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pathway_inference.Rd
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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/analysis.R
\name{pathway_inference}
\alias{pathway_inference}
\title{Inferring signaling pathways based on the user-select genes & database}
\usage{
pathway_inference(
object,
DB,
gene.use_Sender = NULL,
gene.use_Receiver = NULL,
ligand = NULL,
receptor = NULL,
em = NULL,
target = NULL
)
}
\arguments{
\item{object}{Incytr object}
\item{DB}{database used for the inference}
\item{gene.use_Sender}{a list of gene used as the sender genes (ligands). Used all the genes when it is NULL.}
\item{gene.use_Receiver}{a list of gene used as the receiver genes (receptors, EMs, and targets). Used all the genes when it is NULL.}
\item{ligand}{a list of gene used to filter the ligand}
\item{receptor}{a list of gene used to filter the receptor}
\item{em}{a list of gene used to filter the em}
\item{target}{a list of gene used to filter the target}
}
\value{
an Incytr object
}
\description{
Inferring signaling pathways based on the user-select genes & database
}