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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head>
<title>EuGene : Links - Contacts</title>
<link rel="SHORTCUT ICON" href="Images/eg.jpg">
<link rel="STYLESHEET" type="text/css" href="Style/eugene.css">
<script language="JavaScript1.2" src="Javascripts/slide.js">
/************************************************************************
NewsSlideFade
* Copyright (C) 2001 Thomas Brattli
* This script was released at DHTMLCentral.com
* Visit for more great scripts!
* This may be used and changed freely as long as this msg is intact!
* We will also appreciate any links you could give us.
*
* Made by Thomas Brattli
************************************************************************/
</script>
<script language="JavaScript1.2" src="Javascripts/coolmenus4.js">
/************************************************************************
Copyright (c) 2001 Thomas Brattli (webmaster@dhtmlcentral.com)
DHTML coolMenus - Get it at coolmenus.dhtmlcentral.com
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Extra info - Coolmenus reference/help - Extra links to help files ****
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<script language="JavaScript1.2" src="Javascripts/cm_addins.js">
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Coolmenus add-in file for more advanced featuers..
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</script>
</head>
<body leftmargin="0" topmargin="0" marginwidth="0" marginheight="0"
bgcolor="white">
<script language="JavaScript1.2" src="Javascripts/euG_menu.js">
</script>
<!-- Bug netscape 4
<div id="divNewsCont">
<div id="divNews">
</div>
</div>
-->
<a NAME="links"></a>
<table height="100%" width="100%" CELLSPACING="0" CELLPADDING="0"
border="0" rows="2">
<tr height="140">
<td BACKGROUND="Images/top.jpg" colspan="2" height="140"
valign="top"> </td>
</tr>
<tr>
<td width="145" valign="top" align="left"
BACKGROUND="Images/left.jpg">
<img src="Images/left.jpg" width="145" height="10"></td>
<td width="100%" valign=top>
<!-- DEBUT PAGE... -->
<table CELLSPACING="0" CELLPADDING="6" border="0">
<tr>
<td colspan="2"> </td>
</tr>
<tr>
<td colspan="2"> <img src="Images/m_links_on.jpg">
<br> <br> </td>
</tr>
<tr>
<td> <img src="Images/puce.jpg" width="15"> </td>
<td width="100%">
<font color="#06768c"> <b>EuGèneHom web site :</b> </font>
</td>
</tr>
<tr>
<td> </td>
<td>
<img src="Images/puce_flech.jpg">
<font size="-1">
<a href="http://bioinfo.genopole-toulouse.prd.fr/apps/eugene/EuGeneHom/cgi-bin/EuGeneHom.pl">EuGene'Hom</a>
: a generic similarity-based gene finder using
multiple homologous sequences.
</font> <br> <br>
</td>
</tr>
<tr>
<td> <img src="Images/puce.jpg" width="15"> </td>
<td>
<font color="#06768c"> <b>Signal plugins :</b> </font>
</td>
</tr>
<tr>
<td> </td>
<td>
<img src="Images/puce_flech.jpg">
<font size="-1">
<a href="http://www.cbs.dtu.dk/services/NetStart/">NetStart</a>
: predictions of translation start in vertebrate and
Arabidopsis thaliana nucleotide sequences.
</font>
</td>
</tr>
<tr>
<td> </td>
<td>
<img src="Images/puce_flech.jpg">
<font size="-1">
<a href="http://www.hri.co.jp/atgpr/">ATGpr</a>
: a program for identifying the initiation codons in
cDNA sequences.
</font>
</td>
</tr>
<tr>
<td> </td>
<td>
<img src="Images/puce_flech.jpg">
<font size="-1">
<a href="http://www.cbs.dtu.dk/services/NetGene2/">NetGene2</a>
: predictions of splice sites in human, C. elegans and
A. thaliana DNA.
</font>
</td>
</tr>
<tr>
<td> </td>
<td>
<img src="Images/puce_flech.jpg">
<font size="-1">
<a href="http://bioinformatics.iastate.edu/cgi-bin/sp.cgi">SplicePredictor</a>
: a method to identify potential splice sites in
(plant) pre-mRNA by sequence inspection using Bayesian
statistical models.
</font>
</td>
</tr>
<tr>
<td> </td>
<td>
<img src="Images/puce_flech.jpg">
<font size="-1">
<a href="http://www.tigr.org/tdb/GeneSplicer/gene_spl.html">GeneSplicer</a>
: a fast, flexible system for detecting splice sites in
the genomic DNA of various eukaryotes.
</font> <br> <br>
</td>
</tr>
<tr>
<td> <img src="Images/puce.jpg" width="15"> </td>
<td>
<font color="#06768c"> <b>Content plugins :</b> </font>
</td>
</tr>
<tr>
<td> </td>
<td>
<img src="Images/puce_flech.jpg">
<font size="-1">
<a href="http://www.ncbi.nlm.nih.gov/BLAST/">Blast</a>
: Translated query vs. protein database (blastx),
translated query vs. translated database (tblastx)...
</font>
</td>
</tr>
<tr>
<td> </td>
<td>
<img src="Images/puce_flech.jpg">
<font size="-1">
<a href="http://pbil.univ-lyon1.fr/sim4.php">Sim4</a>
: addresses the problem of efficiently aligning a
transcribed and spliced DNA sequence (mRNA, EST) with
a genomic sequence containing that gene, allowing for
introns in the genomic sequence (taking into account
consensus splice signals) and a relatively small
number of sequencing errors.
</font>
</td>
</tr>
<tr>
<td> </td>
<td>
<img src="Images/puce_flech.jpg">
<font size="-1">
<a href="http://ftp.genome.washington.edu/cgi-bin/RepeatMasker">RepeatMasker</a>
: screens DNA sequences in fasta format against a
library of repetitive elements and returns a masked
query sequence ready for database searches as well as
a table annotating the masked regions.
</font>
</td>
</tr>
<tr>
<td colspan="2"><a NAME="contacts"> <br> </td>
</tr>
<tr>
<td colspan="2"> <img src="Images/m_contacts_on.jpg">
<br> <br> </td>
</tr>
<tr>
<td> <img src="Images/puce.jpg" width="15"> </td>
<td width="100%">
<font color="#06768c"> <b>EuGène team :</b> </font>
</td>
</tr>
<tr>
<td> </td>
<td>
<img src="Images/puce_flech.jpg">
<font size="-1">
Questions, commentaries, impressions, bug reports :
contact the
<a href="mailto:eugene __at__ ossau __dot__ toulouse __dot__ inra __dot__ fr">EuGène team</a>.
</font> <br> <br>
</td>
</tr>
</table>
<!-- FIN PAGE -->
</td>
</tr>
</table>
</body>
</html>