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More user-friendly page titles
Squashed commit of pull request #113 to close issue #22, the page titles were very short reflecting the old MediaWiki site.
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wiki/ACE_contig_to_alignment.md

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title: ACE contig to alignment
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title: Represent an alignment from contig archived in ACE files.
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permalink: wiki/ACE_contig_to_alignment
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wiki/Active_projects.md

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title: Active projects
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title: List of active project for Biopython.
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permalink: wiki/Active_projects
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wiki/AlignIO.md

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title: Introducing AlignIO
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title: The module for multiple sequence alignments, AlignIO
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permalink: wiki/AlignIO
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wiki/Annotate_Entrez_Gene_IDs.md

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title: Annotate Entrez Gene IDs
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title: Retrieve and annotate Entrez Gene IDS with the Entrez module.
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permalink: wiki/Annotate_Entrez_Gene_IDs
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wiki/BioGeography.md

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title: BioGeography
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title: Gathering and processing biogeographical data with the BioGeography module.
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permalink: wiki/BioGeography
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wiki/BioSQL.md

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title: BioSQL
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title: Managing local biological databases with the BioSQL module.
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permalink: wiki/BioSQL
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wiki/BioSQL_Windows.md

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title: BioSQL_Windows
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title: Managing local biological databases with the BioSQL module [Windows environment version].
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permalink: wiki/BioSQL_Windows
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wiki/Building_a_release.md

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title: Building a release
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title: How to build a release for Biopython.
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permalink: wiki/Building_a_release
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wiki/Concatenate_nexus.md

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title: Concatenate nexus
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title: Concatenating multiple alignments NEXUS files with the Bio.Nexus module.
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permalink: wiki/Concatenate_nexus
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wiki/Contributing.md

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title: Contributing
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title: Contributing to Biopython.
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wiki/Converting_sequence_files.md

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title: Converting sequence files
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title: Converting sequence files with the Bio.SeqIO module.
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permalink: wiki/Converting_sequence_files
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wiki/Coordinate_mapping.md

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title: Coordinate mapping
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title: Mapping genetic coordinates with the Bio.SeqUtils.Mapper module.
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permalink: wiki/Coordinate_mapping
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wiki/Gene_Ontology.md

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title: Gene Ontology
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title: Biopython and the Gene Ontology (GO) consortium.
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permalink: wiki/Gene_Ontology
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wiki/Gene_predictions_to_protein_sequences.md

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title: Gene predictions to protein sequences
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title: From gene sequence to predicted protein with the GFF module.
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permalink: wiki/Gene_predictions_to_protein_sequences
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wiki/Intergenic_regions.md

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title: Intergenic regions
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title: Workflow to extract intergenic regions from a sequence.
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permalink: wiki/Intergenic_regions
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wiki/List_of_applications_executed_via_Biopython.md

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title: List of applications executed via Biopython
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title: List of applications executed via Biopython.
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permalink: wiki/List_of_applications_executed_via_Biopython
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wiki/MotifDev.md

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title: MotifDev
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title: Current development for the Bio.Motif module.
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permalink: wiki/MotifDev
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wiki/PAML.md

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title: Interfacing with PAML
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title: Interfacing with "Phylogenetic Analysis by Maximum Likelihood" (PAML) package.
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permalink: wiki/PAML
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wiki/PhyloXML.md

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title: PhyloXML - Working with phyloXML Files
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title: Working with phyloXML files with the PhyloXML module.
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permalink: wiki/PhyloXML
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wiki/Phylo_cookbook.md

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title: Phylo Cookbook
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title: Bio.Phylo Cookbook.
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permalink: wiki/Phylo_cookbook
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wiki/PopGen_dev.md

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title: Development Page for the PopGen Module
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title: Development Page for the PopGen Module.
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permalink: wiki/PopGen_dev
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wiki/PopGen_dev_Statistics.md

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title: Developing Statistics for the Population Genetics Module
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title: Developing statistics for the Population Genetics Module.
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permalink: wiki/PopGen_dev_Statistics
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wiki/ProtParam.md

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title: ProtParam - Analyzing Protein Sequences
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title: Analyzing protein sequences with the ProtParam module.
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permalink: wiki/ProtParam
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wiki/Publications.md

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title: Publications using Biopython
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title: Publications using Biopython.
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permalink: wiki/Publications
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wiki/Reading_from_unix_pipes.md

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title: Reading from UNIX Pipes
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title: Reading data from UNIX pipes.
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permalink: wiki/Reading_from_unix_pipes
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wiki/Reading_large_PDB_files.md

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title: Reading large PDB Files
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title: Reading large PDB files with Biopython.
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permalink: wiki/Reading_large_PDB_files
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wiki/Remove_PDB_disordered_atoms.md

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title: Remove PDB disordered atoms
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title: Remove PDB disordered atoms with the Bio.PDB module.
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permalink: wiki/Remove_PDB_disordered_atoms
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wiki/Seq.md

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title: The Seq Object
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title: Handling sequences with the Seq class.
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permalink: wiki/Seq
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wiki/SeqRecord.md

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title: Introduction to SeqRecord
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title: Introduction to the SeqRecord class.
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permalink: wiki/SeqRecord
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