DESCRIPTION

Package: RSoptSC
Type: Package
Title: Low-Rank Factorization for Subspace-clustering
Version: 0.0.0.9000
Authors@R: c(
    person("Matt", "Karikomi", email = "mattkarikomi@gmail.com", role = c("aut", "cre")),
    person("Shuxiong", "Wang", email = "shuxiowa@uci.edu", role = c("aut")),
    person("Adam", "MacLean", email = "macleana@usc.edu", role = c("aut")),
    person("Qing", "Nie", email = "nie@math.uci.edu", role = c("ths")))
Maintainer: Matt Karikomi <mattkarikomi@gmail.com>
Description: Clustering based on single-cell data. 
    Population signaling profiles based on expression pathway
    knowledge.
Depends: R (>= 3.6)
License: MIT + file LICENSE
URL: https://github.com/mkarikom/RSoptSC
BugReports: https://github.com/mkarikom/RSoptSC/issues
Remotes: 
	renozao/NMF@devel
Encoding: UTF-8
LazyData: true
Imports:
    FNN (>= 1.1.2.1),
    ggplot2 (>= 3.0.0),
    Matrix (>= 1.2-12),
    Rtsne (>= 0.13),
    NMF (>= 0.23),
    reshape2 (>= 1.4.3),
    dplyr (>= 0.7.6),
    gplots (>= 3.0.1),
    igraph (>= 1.2.2),
    RColorBrewer (>= 1.1-2),
    tibble (>= 2.0.1),
    umap (>= 0.2.0.0),
    expm (>= 0.999-3),
    cluster (>= 2.0.7-1),
    magrittr (>= 1.5),
    cowplot (>= 0.9.3),
    parallel,
    foreach,
    doParallel
Suggests: testthat,
    rmarkdown, knitr, kableExtra, RCurl
biocViews: RNASeq
RoxygenNote: 7.1.1
VignetteBuilder: knitr