diff --git a/.coveragerc b/.coveragerc new file mode 100644 index 00000000..d5b25266 --- /dev/null +++ b/.coveragerc @@ -0,0 +1,3 @@ +[run] +branch = True +relative_files = True diff --git a/.github/workflows/qiita-plugin-ci.yml b/.github/workflows/qiita-plugin-ci.yml index 8d714344..6182a919 100644 --- a/.github/workflows/qiita-plugin-ci.yml +++ b/.github/workflows/qiita-plugin-ci.yml @@ -2,7 +2,7 @@ on: push: - branches: [dev] + branches: [master] pull_request: jobs: @@ -90,11 +90,10 @@ jobs: pip --quiet install https://github.com/qiita-spots/qtp-job-output-folder/archive/refs/heads/main.zip # pip --quiet install . - pip install . + export QP_KLP_CONFIG_FP=`pwd`/tests/configuration.json + pip install -e . pip --quiet install coveralls - export QP_KLP_CONFIG_FP=`pwd`/configuration.json - configure_qtp_job_output_folder --env-script "source /home/runner/.profile; conda activate klp" --ca-cert $QIITA_ROOTCA_CERT configure_klp --env-script "source /home/runner/.profile; export QP_KLP_CONFIG_FP=$QP_KLP_CONFIG_FP; conda activate klp" --ca-cert $QIITA_ROOTCA_CERT @@ -131,7 +130,7 @@ jobs: sleep 10 cat /tmp/supervisord.log - - name: Main tests + - name: qp-knight-lab-processing & mg-scripts tests shell: bash -l {0} env: COVER_PACKAGE: ${{ matrix.cover_package }} @@ -139,9 +138,10 @@ jobs: conda activate klp export QIITA_ROOTCA_CERT=`pwd`/qiita-dev/qiita_core/support_files/ci_rootca.crt export QIITA_CONFIG_FP=`pwd`/qiita-dev/qiita_core/support_files/config_test_local.cfg - export QP_KLP_CONFIG_FP=`pwd`/configuration.json + export QP_KLP_CONFIG_FP=`pwd`/tests/configuration.json export PYTHONWARNINGS="ignore:Certificate for localhost has no \`subjectAltName\`" - nosetests --with-doctest --with-coverage -v --cover-package=qp_klp + nosetests --with-doctest --with-coverage -v --cover-package qp_klp,sequence_processing_pipeline + - uses: codecov/codecov-action@v3 with: token: ${{ secrets.CODECOV_TOKEN }} @@ -160,4 +160,4 @@ jobs: - name: lint run: | pip install -q flake8 - flake8 qp_klp + flake8 . diff --git a/.gitignore b/.gitignore index f52f7a1d..0eba6ef1 100644 --- a/.gitignore +++ b/.gitignore @@ -129,4 +129,7 @@ dmypy.json .pyre/ # ignore local changes -qp_klp/tests/data/sample-sheets/*/*/*.csv +tests/data/sample-sheets/*/*/*.csv + +# test output +tests/data/output_dir/ diff --git a/LICENSE b/LICENSE index 472c9d41..c3d891fd 100644 --- a/LICENSE +++ b/LICENSE @@ -1,6 +1,9 @@ BSD 3-Clause License -Copyright (c) 2014--, Qiita Spots +Copyright (c) 2014, Qiita Spots +Copyright (c) 2020, biocore +Copyright (c) 2021, jdereus + All rights reserved. Redistribution and use in source and binary forms, with or without diff --git a/README.md b/README.md new file mode 100644 index 00000000..6917e6ee --- /dev/null +++ b/README.md @@ -0,0 +1,68 @@ +# Sequence Processing Pipeline + +A Jupyter notebook to assist wet lab shotgun pipeline. +A packaged Python-based implementation of Knight Lab's sequencing process pipeline. + +## Installation + +To install this package, first clone this repository from GitHub: + +```bash +git clone https://github.com/biocore/mg-scripts.git +``` + +Create a Python3 Conda environment in which to run the notebook: + +```bash +conda create --yes -n spp python='python=3.9' scikit-learn pandas numpy nose pep8 flake8 matplotlib jupyter notebook 'seaborn>=0.7.1' pip openpyxl 'seqtk>=1.4' click scipy fastq-pair +``` + +Activate the Conda environment: + +```bash +source activate sp_pipeline +``` + +Change directory to the cloned repository folder and install: + +```bash +cd mg-scripts +pip install -e . +``` + +This will automatically install https://github.com/biocore/metagenomics_pooling_notebook.git, a dependency of mg-scripts and the sequence_processing_pipeline. + +## Running Unittests + +Change directory to the downloaded repository folder: + +```bash +cd mg-scripts +nosetests --with-coverage --cover-inclusive --cover-package sequence_processing_pipeline +``` + +## Getting Started + +Review Pipeline.py and main.py to learn how to import and access package functionality: + +```bash +cd mg-scripts/sequence_processing_pipeline +more Pipeline.py +more main.py +``` + +Adjust configuration settings as needed: + +```bash +vi tests/data/configuration.json +``` + +Please note that the setting 'minimap2_databases' is expected to be a list of paths to individual .mmi files for QCJob. +For NuQCJob, minimap2_databases is expected to be the path to a directory containing two subdirectories: 'metagenomic' +and 'metatranscriptomic'. Each directory should contain or symlink to the appropriate .mmi files needed for that Assay +type. + +Additional TellSeq-related notes: +'spades-cloudspades-0.1', 'tellread-release-novaseqX' or similar directories must be placed in a location available to SPP. +Their paths should be made known to SPP in the configuration files. (See examples for details). +Additional scripts found in sequence_processing_pipeline/contrib were contributed by Daniel and Omar and can be similarly located and configured. diff --git a/pyproject.toml b/pyproject.toml index ceb448c7..d0af617d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -2,21 +2,28 @@ requires = ["setuptools", "setuptools-scm"] build-backend = "setuptools.build_meta" +[tool.hatch.build.targets.wheel] +packages = ["qp_klp", "sequence_processing_pipeline"] + +[tool.poetry] +packages = [ + { include = "src/qp_klp", from = "./", to = "qp_klp" }, + { include = "src/sequence_processing_pipeline", from = "./", to = "sequence_processing_pipeline" }, +] + [project] -name = "qp_klp" +name = "knight_lab_processing" # version strings must comply with PEP 440: # https://peps.python.org/pep-0440/ -version = "2022.4" -authors = [ - {name = "Qiita Development Team", email = "qiita.help@gmail.com"}, -] +version = "2025.4" +authors = [{ name = "Qiita Development Team", email = "qiita.help@gmail.com" }] description = "Qiita Plugin: Knight Lab Processing" readme = "README.rst" # ">=" required as most available versions of 3.9 will be "3.9.17" or # similar. requires-python = ">=3.9" keywords = ["bioinformatics", "qiita", "sequence_processing_pipeline"] -license = {text = "BSD"} +license = { text = "BSD" } classifiers = [ "Development Status :: 5 - Production/Stable", "License :: OSI Approved :: BSD License", @@ -27,17 +34,26 @@ classifiers = [ "Programming Language :: Python :: 3.9", "Programming Language :: Python :: Implementation :: CPython", "Operating System :: POSIX :: Linux", - "Operating System :: MacOS :: MacOS X" - ] + "Operating System :: MacOS :: MacOS X", +] dependencies = [ "nose>=0.10.1", "click>=3.3", "future", "pandas", + 'requests', + 'flake8', + 'nose', + 'coverage', + 'pgzip', + 'jinja2', + 'numpy', + 'cython', "qiita-files@https://github.com/qiita-spots/qiita-files/archive/master.zip", "qiita_client@https://github.com/qiita-spots/qiita_client/archive/master.zip", - "sequence-processing-pipeline@https://github.com/biocore/mg-scripts/archive/master.zip" + 'metapool@https://github.com/biocore/metagenomics_pooling_notebook/archive/master.zip', ] [project.scripts] configure_klp = "qp_klp.scripts.configure_klp:config" start_klp = "qp_klp.scripts.start_klp:execute" +demux = "sequence_processing_pipeline.scripts.cli:demux" diff --git a/qp_klp/tests/data/configuration.json b/qp_klp/tests/data/configuration.json deleted file mode 100644 index 265a12f8..00000000 --- a/qp_klp/tests/data/configuration.json +++ /dev/null @@ -1,6 +0,0 @@ -{ - "archive_path": "sequence_processing_pipeline/tests/data/sequencing/knight_lab_completed_runs", - "search_paths": ["/tmp", "qp_klp/tests/data"], - "amplicon_search_paths": ["/tmp", "qp_klp/tests/data"], - "profiles_path": "qp_klp/tests/data/configuration_profiles" -} \ No newline at end of file diff --git a/qp_klp/tests/data/multiqc-bclconvert-config.yaml b/qp_klp/tests/data/multiqc-bclconvert-config.yaml deleted file mode 100644 index 4dd1ef75..00000000 --- a/qp_klp/tests/data/multiqc-bclconvert-config.yaml +++ /dev/null @@ -1 +0,0 @@ -This is a file. diff --git a/qp_klp/Assays.py b/src/qp_klp/Assays.py similarity index 100% rename from qp_klp/Assays.py rename to src/qp_klp/Assays.py diff --git a/qp_klp/FailedSamplesRecord.py b/src/qp_klp/FailedSamplesRecord.py similarity index 100% rename from qp_klp/FailedSamplesRecord.py rename to src/qp_klp/FailedSamplesRecord.py diff --git a/qp_klp/Protocol.py b/src/qp_klp/Protocol.py similarity index 100% rename from qp_klp/Protocol.py rename to src/qp_klp/Protocol.py diff --git a/qp_klp/StandardAmpliconWorkflow.py b/src/qp_klp/StandardAmpliconWorkflow.py similarity index 100% rename from qp_klp/StandardAmpliconWorkflow.py rename to src/qp_klp/StandardAmpliconWorkflow.py diff --git a/qp_klp/StandardMetagenomicWorkflow.py b/src/qp_klp/StandardMetagenomicWorkflow.py similarity index 100% rename from qp_klp/StandardMetagenomicWorkflow.py rename to src/qp_klp/StandardMetagenomicWorkflow.py diff --git a/qp_klp/StandardMetatranscriptomicWorkflow.py b/src/qp_klp/StandardMetatranscriptomicWorkflow.py similarity index 100% rename from qp_klp/StandardMetatranscriptomicWorkflow.py rename to src/qp_klp/StandardMetatranscriptomicWorkflow.py diff --git a/qp_klp/TellseqMetagenomicWorkflow.py b/src/qp_klp/TellseqMetagenomicWorkflow.py similarity index 100% rename from qp_klp/TellseqMetagenomicWorkflow.py rename to src/qp_klp/TellseqMetagenomicWorkflow.py diff --git a/qp_klp/WorkflowFactory.py b/src/qp_klp/WorkflowFactory.py similarity index 100% rename from qp_klp/WorkflowFactory.py rename to src/qp_klp/WorkflowFactory.py diff --git a/qp_klp/Workflows.py b/src/qp_klp/Workflows.py similarity index 100% rename from qp_klp/Workflows.py rename to src/qp_klp/Workflows.py diff --git a/qp_klp/__init__.py b/src/qp_klp/__init__.py similarity index 100% rename from qp_klp/__init__.py rename to src/qp_klp/__init__.py diff --git a/qp_klp/klp.py b/src/qp_klp/klp.py similarity index 100% rename from qp_klp/klp.py rename to src/qp_klp/klp.py diff --git a/qp_klp/scripts/configure_klp.py b/src/qp_klp/scripts/configure_klp.py similarity index 100% rename from qp_klp/scripts/configure_klp.py rename to src/qp_klp/scripts/configure_klp.py diff --git a/qp_klp/scripts/start_klp.py b/src/qp_klp/scripts/start_klp.py similarity index 100% rename from qp_klp/scripts/start_klp.py rename to src/qp_klp/scripts/start_klp.py diff --git a/src/sequence_processing_pipeline/Commands.py b/src/sequence_processing_pipeline/Commands.py new file mode 100644 index 00000000..51e8f5b5 --- /dev/null +++ b/src/sequence_processing_pipeline/Commands.py @@ -0,0 +1,158 @@ +import glob +import gzip +import os +from sequence_processing_pipeline.util import (iter_paired_files, + determine_orientation) + + +def split_similar_size_bins(data_location_path, max_file_list_size_in_gb, + batch_prefix): + '''Partitions input fastqs to coarse bins + + :param data_location_path: Path to the ConvertJob directory. + :param max_file_list_size_in_gb: Upper threshold for file-size. + :param batch_prefix: Path + file-name prefix for output-files. + :return: The number of output-files created, size of largest bin. + ''' + # to prevent issues w/filenames like the ones below from being mistaken + # for R1 or R2 files, use determine_orientation(). + # LS_8_22_2014_R2_SRE_S2_L007_I1_001.fastq.gz + # LS_8_22_2014_R1_SRE_S3_L007_I1_001.fastq.gz + + # since the names of all fastq files are being scanned for orientation, + # collect all of them instead of mistakenly pre-filtering some files. + fastq_paths = glob.glob(data_location_path + '/*/*.fastq.gz') + fastq_paths = [x for x in fastq_paths + if determine_orientation(x) in ['R1', 'R2']] + + # convert from GB and halve as we sum R1 + max_size = (int(max_file_list_size_in_gb) * (2 ** 30) / 2) + + split_offset = 0 + + # ensure we are max-sized to start. + current_size = max_size * 10 + fp = None + + bucket_size = 0 + max_bucket_size = 0 + + for a, b in iter_paired_files(fastq_paths): + r1_size = os.stat(a).st_size + r2_size = os.stat(b).st_size + + output_base = os.path.dirname(a).split('/')[-1] + if current_size + r1_size > max_size: + # bucket is full. + if bucket_size > max_bucket_size: + max_bucket_size = bucket_size + + # reset bucket_size. + bucket_size = r1_size + r2_size + + if fp is not None: + fp.close() + + split_offset += 1 + current_size = r1_size + fp = open(batch_prefix + '-%d' % split_offset, 'w') + else: + # add to bucket_size + bucket_size += r1_size + r2_size + current_size += r1_size + + fp.write("%s\t%s\t%s\n" % (a, b, output_base)) + + if fp is not None: + fp.close() + + if split_offset == 0: + raise ValueError("No splits made") + + return split_offset, max_bucket_size + + +def demux_cmd(id_map_fp, fp_fp, out_d, task, maxtask): + with open(id_map_fp, 'r') as f: + id_map = f.readlines() + id_map = [line.strip().split('\t') for line in id_map] + + # fp needs to be an open file handle. + # ensure task and maxtask are proper ints when coming from cmd-line. + with open(fp_fp, 'r') as fp: + demux(id_map, fp, out_d, int(task), int(maxtask)) + + +def demux(id_map, fp, out_d, task, maxtask): + """Split infile data based in provided map""" + delimiter = '::MUX::' + mode = 'wt' + ext = '.fastq.gz' + sep = '/' + rec = '@' + + openfps = {} + + for offset, (idx, r1, r2, outbase) in enumerate(id_map): + if offset % maxtask == task: + idx = rec + idx + + # setup output locations + outdir = out_d + sep + outbase + fullname_r1 = outdir + sep + r1 + ext + fullname_r2 = outdir + sep + r2 + ext + + os.makedirs(outdir, exist_ok=True) + current_fp_r1 = gzip.open(fullname_r1, mode) + current_fp_r2 = gzip.open(fullname_r2, mode) + current_fp = {'1': current_fp_r1, '2': current_fp_r2} + openfps[idx] = current_fp + + # setup a parser + seq_id = iter(fp) + seq = iter(fp) + dumb = iter(fp) + qual = iter(fp) + + for i, s, d, q in zip(seq_id, seq, dumb, qual): + # '@1', 'LH00444:84:227CNHLT4:7:1101:41955:2443/1' + # '@1', 'LH00444:84:227CNHLT4:7:1101:41955:2443/1 BX:Z:TATGACACATGCGGCCCT' # noqa + # '@baz/1 + + # NB: from 6d794a37-12cd-4f8e-95d6-72a4b8a1ec1c's only-adapter-filtered results: # noqa + # @A00953:244:HYHYWDSXY:3:1101:14082:3740 1:N:0:CCGTAAGA+TCTAACGC + + fname_encoded, sid = i.split(delimiter, 1) + + if fname_encoded not in openfps: + continue + + current_fp = openfps[fname_encoded] + + # remove '\n' from sid and split on all whitespace. + tmp = sid.strip().split() + + if len(tmp) == 1: + # sequence id line contains no optional metadata. + # don't change sid. + # -1 is \n + orientation = sid[-2] + sid = rec + sid + elif len(tmp) == 2: + sid = tmp[0] + metadata = tmp[1] + # no '\n' + orientation = sid[-1] + # hexdump confirms separator is ' ', not '\t' + sid = rec + sid + ' ' + metadata + '\n' + else: + raise ValueError(f"'{sid}' is not a recognized form") + + current_fp[orientation].write(sid) + current_fp[orientation].write(s) + current_fp[orientation].write(d) + current_fp[orientation].write(q) + + for d in openfps.values(): + for f in d.values(): + f.close() diff --git a/src/sequence_processing_pipeline/ConvertJob.py b/src/sequence_processing_pipeline/ConvertJob.py new file mode 100644 index 00000000..3a521d8c --- /dev/null +++ b/src/sequence_processing_pipeline/ConvertJob.py @@ -0,0 +1,381 @@ +from os.path import join, exists, split +from sequence_processing_pipeline.Job import Job +from sequence_processing_pipeline.PipelineError import (PipelineError, + JobFailedError) +import logging +import re +from metapool import load_sample_sheet, sheet_needs_demuxing, \ + SAMPLES_DETAILS_KEY, SAMPLE_NAME_KEY, SS_SAMPLE_ID_KEY, ORIG_NAME_KEY, \ + PRIMARY_STUDY_KEY, SECONDARY_STUDIES_KEY, QIITA_ID_KEY, \ + PROJECT_FULL_NAME_KEY +from shutil import copyfile + +MATCHING_FILES_KEY = 'matching_files' + + +class ConvertJob(Job): + def __init__(self, run_dir, output_path, sample_sheet_path, queue_name, + node_count, nprocs, wall_time_limit, pmem, bcl_tool_path, + modules_to_load, qiita_job_id): + """ + ConvertJob provides a convenient way to run bcl-convert or bcl2fastq + on a directory BCL files to generate Fastq files. + :param run_dir: The 'run' directory that contains BCL files. + :param output_path: Path where all pipeline-generated files live. + :param sample_sheet_path: The path to a sample-sheet. + :param queue_name: The name of the Torque queue to use for processing. + :param node_count: The number of nodes to request. + :param nprocs: The maximum number of parallel processes to use. + :param wall_time_limit: A hard time limit (in min) to bound processing. + :param bcl_tool_path: The path to either bcl2fastq or bcl-convert. + :param modules_to_load: A list of Linux module names to load + :param qiita_job_id: identify Torque jobs using qiita_job_id + """ + super().__init__(run_dir, + output_path, + 'ConvertJob', + [bcl_tool_path], + 1000, + modules_to_load=modules_to_load) + + # for metagenomics pipelines, sample_sheet_path will reflect a real + # sample_sheet file. For amplicon pipelines, sample_sheet_path will + # reference a dummy sample_sheet file. + self.sample_sheet_path = sample_sheet_path + self.queue_name = queue_name + self.node_count = node_count + self.nprocs = nprocs + self.wall_time_limit = wall_time_limit + self.pmem = pmem + self.bcl_tool = bcl_tool_path + self.qiita_job_id = qiita_job_id + self.job_script_path = join(self.output_path, f"{self.job_name}.sh") + self.suffix = 'fastq.gz' + self.fastq_paths = None + self.info = None + + tmp = False + for executable_name in ['bcl2fastq', 'bcl-convert']: + if executable_name in self.bcl_tool: + tmp = True + break + + if not tmp: + raise PipelineError(f'{self.bcl_tool} is not the path to a known' + 'executable') + + self._file_check(self.sample_sheet_path) + + # As the sample-sheet is validated by the Pipeline object before + # being passed to ConvertJob, additional validation isn't needed. + + self._generate_job_script() + + def _generate_job_script(self): + """ + Generate a Torque job script for processing supplied root_directory. + :return: The path to the newly-created job-script. + """ + lines = [] + + lines.append("#!/bin/bash") + lines.append(f"#SBATCH --job-name {self.qiita_job_id}_{self.job_name}") + lines.append(f"#SBATCH -p {self.queue_name}") + lines.append(f'#SBATCH -N {self.node_count}') + lines.append(f'#SBATCH -n {self.nprocs}') + lines.append("#SBATCH --time %d" % self.wall_time_limit) + + # send an email to the list of users defined below when a job starts, + # terminates, or aborts. This is used to confirm that the package's + # own reporting mechanism is reporting correctly. + lines.append("#SBATCH --mail-type=ALL") + + # list of users to be contacted independently of this package's + # notification system, when a job starts, terminates, or gets aborted. + lines.append("#SBATCH --mail-user qiita.help@gmail.com") + + lines.append(f"#SBATCH --mem-per-cpu {self.pmem}") + + lines.append("set -x") + lines.append('date') + lines.append('hostname') + lines.append(f'cd {self.root_dir}') + + if self.modules_to_load: + lines.append("module load " + ' '.join(self.modules_to_load)) + + # Assume that the bcl-convert tool is named 'bcl-convert' and choose + # accordingly. + if 'bcl-convert' in self.bcl_tool: + lines.append(('%s ' + '--sample-sheet "%s" ' + '--output-directory %s ' + '--bcl-input-directory . ' + '--bcl-num-decompression-threads 16 ' + '--bcl-num-conversion-threads 16 ' + '--bcl-num-compression-threads 16 ' + '--bcl-num-parallel-tiles 16 ' + '--bcl-sampleproject-subdirectories true ' + '--force') % (self.bcl_tool, + self.sample_sheet_path, + self.output_path)) + + # equivalent cp for bcl-conversion (see below) needed. + else: + lines.append(('%s ' + '--sample-sheet "%s" ' + '--minimum-trimmed-read-length 1 ' + '--mask-short-adapter-reads 1 ' + '-R . ' + '-o %s ' + '--loading-threads 16 ' + '--processing-threads 16 ' + '--writing-threads 16 ' + '--create-fastq-for-index-reads ' + '--ignore-missing-positions ') % + (self.bcl_tool, + self.sample_sheet_path, + self.output_path)) + + with open(self.job_script_path, 'w') as f: + for line in lines: + # remove long spaces in some lines. + line = re.sub(r'\s+', ' ', line) + f.write(f"{line}\n") + + def run(self, callback=None): + """ + Run BCL2Fastq/BCLConvert conversion + :param callback: optional function taking two parameters (id, status) + that is called when a running process's status is + changed. + :return: + """ + try: + job_info = self.submit_job(self.job_script_path, + exec_from=self.log_path, + callback=callback) + + # ConvertJob() is used to process Amplicon as well as Meta*Omic + # runs. Amplicon runs use a dummy sample-sheet generated by + # Pipeline(). For these types of sheets we can't copy controls + # between projects because demuxing is not performed here. + _, sheet_name = split(self.sample_sheet_path) + if sheet_name != 'dummy_sample_sheet.csv': + self.copy_controls_between_projects() + + except JobFailedError as e: + # When a job has failed, parse the logs generated by this specific + # job to return a more descriptive message to the user. + info = self.parse_logs() + # prepend just the message component of the Error. + info.insert(0, str(e)) + raise JobFailedError('\n'.join(info)) + + self. mark_job_completed() + + logging.info(f'Successful job: {job_info}') + + def parse_logs(self): + # overrides Job.parse_logs() w/tailored parse for specific logs. + log_path = join(self.output_path, 'Logs') + errors = join(log_path, 'Errors.log') + + msgs = [] + + if not exists(errors): + # we do not raise an Error in this case because it's expected that + # parse_logs() will be called in response to an exceptional + # condition. + msgs.append(f"'{errors} does not exist") + + with open(errors, 'r') as f: + lines = f.readlines() + for line in [x.strip() for x in lines]: + msgs.append(line) + + return msgs + + @staticmethod + def parse_job_script(job_script_path): + # Returns run-directory and sample-sheet path from a job-script. + + if not exists(job_script_path): + raise ValueError(f"'{job_script_path}' is not a valid path") + + with open(job_script_path, 'r') as f: + lines = f.readlines() + lines = [x.strip() for x in lines] + + # As this code creates this file, we can expect it to be of a certain + # format. + if lines[0] != '#!/bin/bash': + raise ValueError(f"'{job_script_path}' is not a valid path") + + result = {} + + m = re.match('^cd (.*)$', lines[12]) + + if m: + result['run_directory'] = m.group(1) + else: + raise ValueError("could not detect run_directory in " + f"'{job_script_path}'") + + m = re.match('^bcl-convert --sample-sheet "(.*?)" ', lines[14]) + + if m: + result['sample_sheet_path'] = m.group(1) + else: + raise ValueError("could not detect sample-sheet path in " + f"'{job_script_path}'") + + return result + + def copy_controls_between_projects(self): + def _get_proj_name(proj_info, qiita_id): + for curr_proj_info in proj_info.values(): + if curr_proj_info[QIITA_ID_KEY] == qiita_id: + return curr_proj_info[PROJECT_FULL_NAME_KEY] + + self._get_sample_sheet_info() + + for curr_control in self.controls_info.values(): + curr_sample_name = curr_control[SAMPLE_NAME_KEY] + curr_primary_qiita_study_id = curr_control[PRIMARY_STUDY_KEY] + curr_primary_qiita_study_name = \ + _get_proj_name(self.info, curr_primary_qiita_study_id) + + curr_secondary_qiita_studies_ids = \ + curr_control[SECONDARY_STUDIES_KEY] + for curr_second_qiita_study_id in curr_secondary_qiita_studies_ids: + curr_secondary_qiita_study_name = \ + _get_proj_name(self.info, curr_second_qiita_study_id) + self.copy_sequences( + curr_sample_name, curr_primary_qiita_study_name, + curr_secondary_qiita_study_name) + # next secondary study + # next control + + def _get_sample_sheet_info(self): + # assume path to sample-sheet exists, and sheet is valid. + # otherwise, we would not be here. + sheet = load_sample_sheet(self.sample_sheet_path) + projects_info = sheet.get_projects_details() + controls_info = sheet.get_controls_details() + + # associate with each dictionary a list of matching fastq files. + # this way, we can easily determine which files to copy to another + # project based on just a sample-name/sample-id and a project-name. + for curr_project_name, curr_project_info in projects_info.items(): + # find just the fastq files for this project. + fastq_paths = self._find_files(join(self.output_path, + curr_project_name)) + fastq_paths = [f for f in fastq_paths if f.endswith('.fastq.gz')] + + for curr_sample_info in \ + curr_project_info[SAMPLES_DETAILS_KEY].values(): + curr_sample_info[MATCHING_FILES_KEY] = [] + + # regex based on studying all filenames of all fastq files in + # $WKDIR. Works with _R1_, _R2_, _I1_, _I2_, etc. + rgx = r"^" + re.escape(curr_sample_info[SS_SAMPLE_ID_KEY]) + \ + r"_S\d+_L\d+_[R,I]\d+_\d+.fastq.gz$" + for full_path in fastq_paths: + file_path, file_name = split(full_path) + if re.match(rgx, file_name): + curr_sample_info[MATCHING_FILES_KEY].append(full_path) + # endif path matches sample + # next fastq path + # next sample + # next project + + self.contains_replicates = sheet_needs_demuxing(sheet) + self.info = projects_info + self.controls_info = controls_info + + def copy_sequences(self, sample_name, source_project, dest_project): + """ + Copies all fastq files related to a sample into another project. + :param sample_name: A sample_name value if self.contains_replicates is + False; an orig_name value otherwise. + :param source_project: The source project name including qiita_id. + :param dest_project: The destination project name including qiita_id. + :return: None + """ + if self.info is None: + raise ValueError("This method cannot be called until processing " + "has completed.") + + project_names = list(self.info) + + # confirm source and destination projects are both valid. + for proj in [source_project, dest_project]: + if proj not in project_names: + raise ValueError(f"'{proj}' is not defined in sample sheet") + + if source_project == dest_project: + raise ValueError(f"source '{source_project}' and destination " + f"'{dest_project}' projects are the same") + + # note that the user can supply a sample-name that didn't make it + # through the conversion step and may have no files matched to it. + # this is considered okay and a possible outcome of conversion. In + # this case zero files are copied and no information is passed back + # to the user. + + # projects that contain replicates must also be considered. In this + # situation, the sample_name needs to be compared against all values + # in the orig_name column and the individual sample_names (w/well-ids) + # must be discovered; those individual sample_names can then be + # processed. + + samples = self.info[source_project][SAMPLES_DETAILS_KEY] + + # Either we will need to copy all replicates, in which case we need to + # match our input to orig_name values, or we want to copy + # a single sample, in which case the input needs to be matched to + # sample_name values. The results of our match will be + # stored in results and if we are not copying all replicates, there + # should only be one sample matched in results. + results = [] + + if self.contains_replicates: + for sample in samples.values(): + # assume orig_name is present if contains_replicates is True. + if sample_name == sample[ORIG_NAME_KEY]: + results.append(sample) + else: + # sample_name is a value from the sample_name column. it may or + # may not have a well-id appended, but in either case a single + # sample either exists or it doesn't. + if sample_name in self.info[source_project][SAMPLES_DETAILS_KEY]: + results.append(samples[sample_name]) + + if len(results) == 0: + def _make_msg_base(col_name): + return (f"'{sample_name}' did not match any '{col_name}' " + f"values in project '{source_project}'.") + + if self.contains_replicates: + # the value of sample_name did not match any value in the + # orig_name column. It may match a value in the sample_name + # column. + msg = _make_msg_base(ORIG_NAME_KEY) + \ + (f" Your value '{sample_name}' may have a well-id " + f"appended to it") + else: + # if we don't want to copy all replicates and just want to + # copy a particular sample-name, then providing a value from + # the orig_name column would be ambiguous since it could be + # matched to multiple samples. Not much can be done here. + msg = _make_msg_base(SAMPLE_NAME_KEY) + + raise ValueError(msg) + + for sample in results: + for src_fp in sample[MATCHING_FILES_KEY]: + # split(fp)[1] is simply the original filename, which must + # be provided in the destination path. + dst_fp = join(self.output_path, dest_project, split(src_fp)[1]) + copyfile(src_fp, dst_fp) diff --git a/src/sequence_processing_pipeline/FastQCJob.py b/src/sequence_processing_pipeline/FastQCJob.py new file mode 100644 index 00000000..24147798 --- /dev/null +++ b/src/sequence_processing_pipeline/FastQCJob.py @@ -0,0 +1,249 @@ +from functools import partial +from jinja2 import Environment +from json import dumps +import logging +from os import listdir, makedirs +from os.path import join, basename +from re import sub +from sequence_processing_pipeline.Job import Job, KISSLoader +from sequence_processing_pipeline.PipelineError import (PipelineError, + JobFailedError) + + +class FastQCJob(Job): + def __init__(self, run_dir, output_path, raw_fastq_files_path, + processed_fastq_files_path, nprocs, nthreads, fastqc_path, + modules_to_load, qiita_job_id, queue_name, node_count, + wall_time_limit, jmem, pool_size, + max_array_length, is_amplicon): + super().__init__(run_dir, + output_path, + 'FastQCJob', + [fastqc_path], + max_array_length, + modules_to_load=modules_to_load) + + self.nprocs = nprocs + self.nthreads = nthreads + self.fastqc_path = fastqc_path + self.queue_name = queue_name + self.node_count = node_count + self.wall_time_limit = wall_time_limit + self.jmem = jmem + self.qiita_job_id = qiita_job_id + self.pool_size = pool_size + self.raw_fastq_files_path = raw_fastq_files_path + self.processed_fastq_files_path = processed_fastq_files_path + self.is_amplicon = is_amplicon + + self.job_script_path = join(self.output_path, f"{self.job_name}.sh") + + self.commands, self.project_names = self._get_commands() + # for lists greater than n commands, chain the extra commands, + # distributing them evenly throughout the first n commands. + self.commands = self._group_commands(self.commands) + self.suffix = 'fastqc.html' + + # for projects that use sequence_processing_pipeline as a dependency, + # jinja_env must be set to sequence_processing_pipeline's root path, + # rather than the project's root path. + self.jinja_env = Environment(loader=KISSLoader('templates')) + + self._generate_job_script() + + def _get_commands(self): + """ + Generate a set of commands to execute, based on the input metadata. + :return: A list of commands to execute w/in a job script + """ + results = [] + + # gather the parameters for processing all relevant raw fastq + # files. + params, project_names = self._scan_fastq_files(True) + for fwd_file_path, rev_file_path, output_path in params: + command = ['fastqc', '--noextract', '-t', str(self.nthreads), + fwd_file_path, rev_file_path, '-o', output_path] + results.append(' '.join(command)) + + if not self.is_amplicon: + # next, do the same for the trimmed/filtered fastq files. + params, additional_project_names = self._scan_fastq_files(False) + for fwd_file_path, rev_file_path, output_path in params: + command = ['fastqc', '--noextract', '-t', str(self.nthreads), + fwd_file_path, rev_file_path, '-o', output_path] + results.append(' '.join(command)) + # remove duplicate project names from the list + project_names = list(set(project_names + additional_project_names)) + + return results, project_names + + def _find_projects(self, path_to_run_id_data_fastq_dir, is_raw_input): + results = [] + for directory in listdir(path_to_run_id_data_fastq_dir): + project_dir = join(path_to_run_id_data_fastq_dir, directory) + files = self._find_files(project_dir) + + # extract only fastq files from the list and remove all files + # in 'zero_files' sub-folder. + files = [x for x in files if x.endswith('.fastq.gz') and + 'zero_files' not in x] + + # remove fastq files in the only-adapter-filtered + # folder from consideration if they are present. + files = [x for x in files if 'only-adapter-filtered' not in x] + + # break files up into R1, R2, I1, I2 + # assume _R1_ does not occur in the path as well. + r1_only = [x for x in files if '_R1_' in x] + r2_only = [x for x in files if '_R2_' in x] + + # amplicon runs may or may not have an i2. this is okay. + i1_only = [x for x in files if '_I1_' in x] + i2_only = [x for x in files if '_I2_' in x] + + if r1_only: + tmp = ' '.join(r1_only) + if 'trimmed_sequences' in tmp: + # a_trim = True, h_filter= = False + filter_type = 'trimmed_sequences' + elif 'filtered_sequences' in tmp: + # a_trim = True, h_filter= = True + # (trimmed AND filtered) + filter_type = 'filtered_sequences' + elif 'amplicon' in tmp: + # a_trim = False, h_filter= = False + filter_type = 'amplicon' + else: + if is_raw_input: + filter_type = 'raw' + else: + raise ValueError("indeterminate type") + + r1_only.sort() + r2_only.sort() + + if filter_type == 'amplicon': + i1_only.sort() + i2_only.sort() + results.append((directory, filter_type, project_dir, + r1_only + i1_only, r2_only + i2_only)) + + results.append( + (directory, filter_type, project_dir, r1_only, r2_only)) + + return results if results else None + + def _scan_fastq_files(self, is_raw_input=False): + find_path = (self.raw_fastq_files_path if is_raw_input else + self.processed_fastq_files_path) + + projects = self._find_projects(find_path, is_raw_input) + + if projects is None: + raise PipelineError("There are no fastq files for FastQCJob to " + "process in %s." % find_path) + + fastqc_results = [] + + # rather than get a list of project_names from a sample-sheet, + # gather a list of names from the outputs of previous jobs. + project_names = [] + + for proj_name, fltr_type, fastq_fp, fwd_files, rev_files in projects: + project_names.append(proj_name) + p_path = partial(join, self.output_path, 'fastqc', proj_name) + output_dir = p_path('bclconvert' if is_raw_input else fltr_type) + makedirs(output_dir, exist_ok=True) + + for some_fwd_file, some_rev_file in zip(fwd_files, rev_files): + fastqc_results.append((some_fwd_file, some_rev_file, + output_dir)) + # remove duplicates + project_names = list(set(project_names)) + + return fastqc_results, project_names + + def _get_failed_indexes(self, job_id): + completed_files = self._find_files(self.output_path) + + # remove path and .completed extension from file-name. e.g.: + # 'project1_0', 'project1_1', ..., 'project1_n' + completed_files = [sub(r'\.completed$', '', basename(fp)) for fp in + completed_files if fp.endswith('.completed')] + + # extract the line number in the .detailed file corresponding to + # the command used for this job + completed_indexes = [int(cf.split('_')[-1]) for cf in completed_files] + + # a successfully completed job array should have a list of array + # numbers from 0 - len(self.commands). + all_indexes = [x for x in range(1, len(self.commands) + 1)] + failed_indexes = list(set(all_indexes) - set(completed_indexes)) + failed_indexes.sort() + + # generate log-file here instead of in run() where it can be + # unittested more easily. + log_fp = join(self.output_path, + 'logs', + f'failed_indexes_{job_id}.json') + + if failed_indexes: + with open(log_fp, 'w') as f: + f.write(dumps({'job_id': job_id, + 'failed_indexes': failed_indexes}, indent=2)) + + return failed_indexes + + def run(self, callback=None): + try: + job_info = self.submit_job(self.job_script_path, + exec_from=self.log_path, + callback=callback) + except JobFailedError as e: + # When a job has failed, parse the logs generated by this specific + # job to return a more descriptive message to the user. + info = self.parse_logs() + # prepend just the message component of the Error. + info.insert(0, str(e)) + raise JobFailedError('\n'.join(info)) from None + + logging.debug(job_info) + + if self._get_failed_indexes(job_info['job_id']): + # raise error if list isn't empty. + raise PipelineError("FastQCJob did not complete successfully.") + + self.mark_job_completed() + + def _generate_job_script(self): + # bypass generating job script for a force-fail job, since it is + # not needed. + if self.force_job_fail: + return None + + template = self.jinja_env.get_template("fastqc_job.sh") + + job_name = f'{self.qiita_job_id}_{self.job_name}' + details_file_name = f'{self.job_name}.array-details' + array_details = join(self.output_path, details_file_name) + array_params = "1-%d%%%d" % (len(self.commands), self.pool_size) + modules_to_load = ' '.join(self.modules_to_load) + + with open(self.job_script_path, mode="w", encoding="utf-8") as f: + f.write(template.render(job_name=job_name, + array_details=array_details, + queue_name=self.queue_name, + node_count=self.node_count, + nprocs=self.nprocs, + wall_time_limit=self.wall_time_limit, + mem_in_gb=self.jmem, + array_params=array_params, + output_path=self.output_path, + modules_to_load=modules_to_load)) + + # save the .details file as well + with open(array_details, 'w') as f: + f.write('\n'.join(self.commands)) + + return self.job_script_path diff --git a/src/sequence_processing_pipeline/GenPrepFileJob.py b/src/sequence_processing_pipeline/GenPrepFileJob.py new file mode 100644 index 00000000..00d6e901 --- /dev/null +++ b/src/sequence_processing_pipeline/GenPrepFileJob.py @@ -0,0 +1,197 @@ +from sequence_processing_pipeline.Job import Job +from sequence_processing_pipeline.PipelineError import PipelineError +from os import makedirs, symlink +from os.path import isdir, join, exists, basename +from shutil import copy, copytree +from functools import partial +from collections import defaultdict +from metapool import (demux_sample_sheet, parse_prep, + demux_pre_prep, pre_prep_needs_demuxing, + sheet_needs_demuxing, load_sample_sheet) + + +class GenPrepFileJob(Job): + def __init__(self, run_dir, convert_job_path, qc_job_path, output_path, + input_file_path, seqpro_path, modules_to_load, + qiita_job_id, reports_path, is_amplicon=False): + + super().__init__(run_dir, + output_path, + 'GenPrepFileJob', + [seqpro_path], + 1000, + modules_to_load=modules_to_load) + + self.run_id = basename(run_dir) + self.input_file_path = input_file_path + self.seqpro_path = seqpro_path + self.qiita_job_id = qiita_job_id + self.is_amplicon = is_amplicon + self.prep_file_paths = None + self.commands = [] + self.has_replicates = False + self.replicate_count = 0 + + self.reports_path = reports_path + + # make the 'root' of the 'run_directory'. on restarts it will exist + # already. + makedirs(join(self.output_path, self.run_id), exist_ok=True) + + # This directory will already exist on restarts, hence avoid + # copying. To support legacy seqpro, We will copy the single file + # seqpro needs into a clean sub-directory named 'Reports'. This can + # be fixed when seqpro is refactored. + reports_dir = join(self.output_path, self.run_id, 'Reports') + + # handle reports_path being either a directory or a file. + if exists(reports_dir): + self.is_restart = True + else: + self.is_restart = False + + if isdir(self.reports_path): + copytree(self.reports_path, reports_dir) + elif not self.is_amplicon: + # assume self.reports_path is a file. + makedirs(reports_dir) + copy(self.reports_path, reports_dir) + + # extracting from either convert_job_path or qc_job_path should + # produce equal results. + projects = self.extract_project_names_from_fastq_dir(qc_job_path) + + for project in projects: + src_path = partial(join, qc_job_path, project) + filtered_seq_dir = src_path('filtered_sequences') + trimmed_seq_dir = src_path('trimmed_sequences') + fastp_rept_dir = src_path('fastp_reports_dir', 'json') + amplicon_seq_dir = join(convert_job_path, project) + + dst = join(self.output_path, self.run_id, project) + + if not self.is_restart: + # these will already be created if restarted. + if self.is_amplicon: + if exists(amplicon_seq_dir): + makedirs(dst, exist_ok=True) + symlink(amplicon_seq_dir, join(dst, 'amplicon')) + else: + if exists(filtered_seq_dir): + makedirs(dst, exist_ok=True) + symlink(filtered_seq_dir, join(dst, + 'filtered_sequences')) + + if exists(trimmed_seq_dir): + makedirs(dst, exist_ok=True) + symlink(trimmed_seq_dir, join(dst, + 'trimmed_sequences')) + + if exists(fastp_rept_dir): + makedirs(dst, exist_ok=True) + symlink(fastp_rept_dir, join(dst, 'json')) + + # seqpro usage: + # seqpro path/to/run_dir path/to/sample/sheet /path/to/fresh/output_dir + + # note that seqpro takes in a sample-sheet as input. Unlike other + # Jobs that process the sample-sheet, validate parameters, and ensure + # that output is segregated by project name, seqpro will be doing that + # for us. A single call to seqpro will generate n output files, one + # for each project described in the sample-sheet's Bioinformatics + # heading. + + # by default, set file_paths to the default: + file_paths = [self.input_file_path] + + if self.is_amplicon: + # parse_prep extended to support parsing pre-prep files as well. + fp = parse_prep(self.input_file_path) + if pre_prep_needs_demuxing(fp): + self.has_replicates = True + + # overwrite default setting + file_paths = self._write_to_file(demux_pre_prep(fp)) + else: + fp = load_sample_sheet(self.input_file_path) + if sheet_needs_demuxing(fp): + self.has_replicates = True + + # overwrite default setting + file_paths = self._write_to_file(demux_sample_sheet(fp)) + + for fp in file_paths: + # generate a seqpro command-line using the new sample-sheet. + if self.has_replicates: + self.replicate_count += 1 + out_path = join(self.output_path, + 'PrepFiles', + str(self.replicate_count)) + else: + out_path = join(self.output_path, 'PrepFiles') + + self.commands.append([self.seqpro_path, '--verbose', + join(self.output_path, self.run_id), + f'"{fp}"', + out_path]) + + def _write_to_file(self, demuxed): + ''' + Saves the new plate-replicate-specific sample-sheet or pre-prep file + w/a unique name. Assume demuxed is a list of DataFrames originating + from a single sample-sheet or pre-prep file. + :param demuxed: + :return: + ''' + results = [] + for count, replicate in enumerate(demuxed, 1): + if self.is_amplicon: + replicate['sample_name'] = replicate['orig_name'] + fp = join(self.output_path, f"replicate_sheet_{count}.txt") + replicate.to_csv(fp, sep='\t', index=False, header=True) + results.append(fp) + else: + fp = join(self.output_path, f"replicate_sheet_{count}.csv") + with open(fp, 'w') as f: + replicate.write(f) + results.append(fp) + + return results + + def _get_prep_file_paths(self, stdout): + # Strip UserWarnings and empty lines that appear on stdout. + tmp = [x for x in stdout.split('\n') if x != '' + and 'UserWarning' not in x] + + results = defaultdict(list) + + for line in tmp: + qiita_id, prep_file_fp = line.strip().split('\t') + results[qiita_id].append(prep_file_fp) + + return results + + def run(self, callback=None): + results = defaultdict(list) + + for command in self.commands: + # note that if GenPrepFileJob will be run after QCJob in a + # Pipeline, and QCJob currently moves its products to the final + # location. It would be cleaner if it did not do this, but + # currently that is how it's done. Hence, self.output_directory + # and the path to run_dir might be different locations than the + # others. + res = self._system_call(' '.join(command), callback=callback) + + if res['return_code'] != 0: + raise PipelineError("Seqpro encountered an error") + + # if successful, store results. + cmd_results = self._get_prep_file_paths(res['stdout']) + + for qiita_id in cmd_results: + results[qiita_id] += cmd_results[qiita_id] + + self.prep_file_paths = results + + self.mark_job_completed() diff --git a/src/sequence_processing_pipeline/Job.py b/src/sequence_processing_pipeline/Job.py new file mode 100644 index 00000000..0080aa55 --- /dev/null +++ b/src/sequence_processing_pipeline/Job.py @@ -0,0 +1,550 @@ +from jinja2 import BaseLoader, TemplateNotFound +from os.path import getmtime +import pathlib +from itertools import zip_longest +from os import makedirs, walk +from os.path import basename, exists, split, join +from sequence_processing_pipeline.PipelineError import (PipelineError, + JobFailedError, + ExecFailedError) +from subprocess import Popen, PIPE +from time import sleep +import logging +from inspect import stack +import re +from collections import Counter +from glob import glob + + +# taken from https://jinja.palletsprojects.com/en/3.0.x/api/#jinja2.BaseLoader +class KISSLoader(BaseLoader): + def __init__(self, path): + # pin the path for loader to the location sequence_processing_pipeline + # (the location of this file), along w/the relative path to the + # templates directory. + self.path = join(pathlib.Path(__file__).parent.resolve(), path) + + def get_source(self, environment, template): + path = join(self.path, template) + if not exists(path): + raise TemplateNotFound(template) + mtime = getmtime(path) + with open(path) as f: + source = f.read() + return source, path, lambda: mtime == getmtime(path) + + +class Job: + slurm_status_terminated = ['BOOT_FAIL', 'CANCELLED', 'DEADLINE', 'FAILED', + 'NODE_FAIL', 'OUT_OF_MEMORY', 'PREEMPTED', + 'REVOKED', 'TIMEOUT'] + + slurm_status_successful = ['COMPLETED'] + + slurm_status_running = ['COMPLETING', 'CONFIGURING', 'PENDING', 'REQUEUED', + 'REQUEUE_FED', 'REQUEUE_HOLD', 'RESIZING', + 'RESV_DEL_HOLD', 'RUNNING', 'SIGNALING', + 'SPECIAL_EXIT', 'STAGE_OUT', 'STOPPED', + 'SUSPENDED'] + + slurm_status_not_running = (slurm_status_terminated + + slurm_status_successful) + + slurm_status_all_states = (slurm_status_terminated + + slurm_status_successful + + slurm_status_running) + + polling_interval_in_seconds = 60 + squeue_retry_in_seconds = 10 + + def __init__(self, root_dir, output_path, job_name, executable_paths, + max_array_length, modules_to_load=None): + """ + Base-class to implement Jobs from. + :param job_name: A name for the job. Used to create log files. + :param root_dir: The path to a Job's root input directory. + :param output_path: The root path to store all job products. + :param executable_paths: A list of executables to validate. + :param modules_to_load: A list of modules to load before validation. + """ + self.job_name = job_name + self.root_dir = root_dir + self._directory_check(self.root_dir, create=False) + self.force_job_fail = False + + self.output_path = join(output_path, self.job_name) + self._directory_check(self.output_path, create=True) + + self.log_path = join(self.output_path, 'logs') + self._directory_check(self.log_path, create=True) + + self.modules_to_load = modules_to_load + self.max_array_length = max_array_length + + self.script_count = 0 + + self.bypass_exec_check = ['bcl-convert'] + + self.suffix = None + + # checking if this is running as part of the unittest + # https://stackoverflow.com/a/25025987 + self.is_test = True if [ + x for x in stack() if 'unittest' in x.filename] else False + + self.audit_folders = None + + # For each executable in the list, get its filename and use _which() + # to see if it can be found. Directly pass an optional list of modules + # to load before-hand, so that the binary can be found. + # If the executable can't be found or doesn't have the same path as + # the version given, raise a PipelineError. + for executable_path in executable_paths: + file_path, file_name = split(executable_path) + + # bcl-convert module is not installed on the node this test gets + # run on, so forego it entirely. + + # Some modules such as bcl-convert are not available to the + # servers running this check. However they are still available + # on Barnacle nodes and this is what's important. For now simply + # bypass the check for known situations. + for name in self.bypass_exec_check: + if name in file_name: + continue + + # No need to test results. _which() will raise a PipelineError if + # file_name is a path and the path found does not match. It will + # also raise a PipelineError if the file could not be found. + if not self.is_test: + self._which(file_name, modules_to_load=self.modules_to_load) + + def run(self): + """ + Since a Job object can encapsulate one or more submit_job() or system() + calls, the base run() method remains unimplemented. It is the job of + each sub-class to define what needs to be run in order to generate the + expected output. + """ + raise PipelineError("Base class run() method not implemented.") + + def mark_job_completed(self): + with open(join(self.output_path, 'job_completed'), 'w') as f: + f.write("job_completed") + + def mark_post_processing_completed(self): + with open(join(self.output_path, + 'post_processing_completed'), 'w') as f: + f.write("post_processing_completed") + + def parse_logs(self): + # by default, look for anything to parse in the logs directory. + log_path = join(self.output_path, 'logs') + files = sorted(glob(join(log_path, '*'))) + msgs = [] + + for some_file in files: + with open(some_file, 'r') as f: + msgs += [line for line in f.readlines() + if 'error:' in line.lower()] + + return [msg.strip() for msg in msgs] + + def _which(self, file_path, modules_to_load=None): + """ + Returns file_path if file_path exists and file_path is a full path. + Otherwise returns the path to a file named 'file_path' found in PATH. + :param file_path: The path of the executable to find. + :param modules_to_load: A list of Linux module names to load. + :return: A path to 'file_name'. + """ + tmp = split(file_path) + # remove any elements that are empty string. + tmp = [x for x in tmp if x] + + isPath = True if len(tmp) > 1 else False + + cmd = 'which ' + file_path + + if modules_to_load: + cmd = 'module load ' + ' '.join(modules_to_load) + ';' + cmd + + results = self._system_call(cmd) + result = results['stdout'].strip() + + if not result: + raise PipelineError("File '%s' does not exist." % file_path) + + if isPath is True and result != file_path: + raise PipelineError(f"Found path '{result} does not match " + f"{file_path}") + + return result + + def _file_check(self, file_path): + if exists(file_path): + logging.debug("file '%s' exists." % file_path) + return True + else: + raise PipelineError("file '%s' does not exist." % file_path) + + def _find_files(self, search_path): + lst = [] + for root, dirs, files in walk(search_path): + lst += [join(root, x) for x in files] + return lst + + def _directory_check(self, directory_path, create=False): + if exists(directory_path): + logging.debug("directory '%s' exists." % directory_path) + else: + if create: + try: + makedirs(directory_path, exist_ok=True) + except OSError as e: + # this is a known potential error. Re-raise it as a + # PipelineError, so it gets handled in the same location + # as the others. + raise PipelineError(str(e)) + else: + raise PipelineError( + "directory_path '%s' does not exist." % directory_path) + + def _system_call(self, cmd, allow_return_codes=[], callback=None): + """ + Call command and return (stdout, stderr, return_value) + :param cmd: The string containing the command to be run, or a sequence + of strings that are the tokens of the command. + :param allow_return_codes: optional user-defined list of successful + return codes in addition to 0. + :param callback: optional function taking two parameters (id, status) + that is called when a running process's status is + changed. + :return: a dictionary containing stdout, stderr, and return_code as + key/value pairs. + """ + proc = Popen(cmd, universal_newlines=True, shell=True, + stdout=PIPE, stderr=PIPE) + + if callback is not None: + callback(jid=proc.pid, status='RUNNING') + + # Communicate pulls all stdout/stderr from the PIPEs + # This call blocks until the command is done + stdout, stderr = proc.communicate() + return_code = proc.returncode + + logging.debug("stdout: %s" % stdout) + logging.debug("stderr: %s" % stderr) + logging.debug("return code: %s" % return_code) + + acceptable_return_codes = [0] + allow_return_codes + + if return_code not in acceptable_return_codes: + if callback is not None: + callback(jid=proc.pid, status='ERROR') + msg = ( + 'Execute command-line statement failure:\n' + f'Command: {cmd}\n' + f'return code: {return_code}\n' + f'stdout: {stdout}\n' + f'stderr: {stderr}\n') + logging.error(msg) + raise ExecFailedError(message=msg) + + if callback is not None: + callback(jid=proc.pid, status='COMPLETED') + + return {'stdout': stdout, 'stderr': stderr, 'return_code': return_code} + + def _query_slurm(self, job_ids): + # query_slurm encapsulates the handling of squeue. + count = 0 + while True: + result = self._system_call("squeue -t all -j " + f"{','.join(job_ids)} " + "-o '%i,%T'") + + if result['return_code'] == 0: + # there was no issue w/squeue, break this loop and + # continue. + break + else: + # there was likely an intermittent issue w/squeue. Pause + # and wait before trying a few more times. If the problem + # persists then report the error and exit. + count += 1 + + if count > 3: + raise ExecFailedError(result['stderr']) + + sleep(Job.squeue_retry_in_seconds) + + lines = result['stdout'].split('\n') + lines.pop(0) # remove header + lines = [x.split(',') for x in lines if x != ''] + + jobs = {} + for job_id, state in lines: + # ensure unique_id is of type string for downstream use. + job_id = str(job_id) + jobs[job_id] = state + + return jobs + + def wait_on_job_ids(self, job_ids, callback=None): + ''' + Wait for the given job-ids to finish running before returning. + :param job_ids: A list of Slurm job-ids + :param callback: Set callback function that receives status updates. + :return: A dictionary of job-ids and their current statuses. + ''' + + # wait_on_job_ids was broken out of submit_job() and updated to monitor + # multiple job ids. This will allow multiple jobs to be submitted to + # Slurm in parallel and a single wait_on_job_ids() can wait on all of + # them before returning, optionally submitting callbacks for each + # job-id. + + # ensure all ids are strings to ensure proper working w/join(). + job_ids = [str(x) for x in job_ids] + + while True: + # Because query_slurm only returns state on the job-ids we specify, + # the wait process is a simple check to see whether any of the + # states are 'running' states or not. + jobs = self._query_slurm(job_ids) + + # jobs will be a dict of job-ids or array-ids for jobs that + # are array-jobs. the value of jobs[id] will be a state e.g.: + # 'RUNNING', 'FAILED', 'COMPLETED'. + states = [jobs[x] in Job.slurm_status_not_running for x in jobs] + + if set(states) == {True}: + # if all the states are either FAILED or COMPLETED + # then the set of those states no matter how many + # array-jobs there were will ultimately be the set of + # {True}. If not then that means there are still jobs + # that are running. + break + + logging.debug(f"sleeping {Job.polling_interval_in_seconds} " + "seconds...") + sleep(Job.polling_interval_in_seconds) + + return jobs + + def submit_job(self, script_path, job_parameters=None, + script_parameters=None, wait=True, + exec_from=None, callback=None): + """ + Submit a Slurm job script and optionally wait for it to finish. + :param script_path: The path to a Slurm job (bash) script. + :param job_parameters: Optional parameters for scheduler submission. + :param script_parameters: Optional parameters for your job script. + :param wait: Set to False to submit job and not wait. + :param exec_from: Set working directory to execute command from. + :param callback: Set callback function that receives status updates. + :return: If wait is True, a dictionary containing the job's id and + status. If wait is False, the Slurm job-id of the submitted + job. Raises PipelineError if job could not be submitted or if + job was unsuccessful. + """ + if job_parameters: + cmd = 'sbatch %s %s' % (job_parameters, script_path) + else: + cmd = 'sbatch %s' % (script_path) + + if script_parameters: + cmd += ' %s' % script_parameters + + if exec_from: + cmd = f'cd {exec_from};' + cmd + + logging.debug("job scheduler call: %s" % cmd) + + if self.force_job_fail: + raise JobFailedError("This job died.") + + # if system_call does not raise a PipelineError(), then the scheduler + # successfully submitted the job. In this case, it should return + # the id of the job in stdout. + results = self._system_call(cmd) + stdout = results['stdout'] + + job_id = stdout.strip().split()[-1] + + # Just to give some time for everything to be set up properly + sleep(10) + + if wait is False: + # return job_id since that is the only information for this new + # job that we have available. User should expect that this is + # not a dict if they explicitly set wait=False. + return job_id + + # the user is expecting a dict with 'job_id' and 'job_state' + # attributes. This method will return a dict w/job_ids as keys and + # their job status as values. This must be munged before returning + # to the user. + results = self.wait_on_job_ids([job_id], callback=callback) + + if job_id in results: + # job is a non-array job + job_result = {'job_id': job_id, 'job_state': results[job_id]} + else: + # job is an array job + # assume all array jobs in this case will be associated w/job_id. + counts = Counter() + for array_id in results: + counts[results[array_id]] += 1 + + # for array jobs we won't be returning a string representing the + # state of a single job. Instead we're returning a dictionary of + # the number of unique states the set of array-jobs ended up in and + # the number for each one. + job_result = {'job_id': job_id, 'job_state': dict(counts)} + + if callback is not None: + if isinstance(job_result['job_state'], dict): + # this is an array job + states = [] + for key in counts: + states.append(f"{key}: {counts[key]}") + + callback(jid=job_id, status=", ".join(states)) + + else: + # this is a standard job + callback(jid=job_id, status=job_result['job_state']) + + if isinstance(job_result['job_state'], dict): + states = list(job_result['job_state'].keys()) + if states == ['COMPLETED']: + return job_result + else: + raise JobFailedError(f"job {job_id} exited with jobs in the " + f"following states: {', '.join(states)}") + else: + if job_result['job_state'] == 'COMPLETED': + return job_result + else: + raise JobFailedError(f"job {job_id} exited with status " + f"{job_result['job_state']}") + + def _group_commands(self, cmds): + # break list of commands into chunks of max_array_length (Typically + # 1000 for Slurm job arrays). To ensure job arrays are never more + # than 1000 jobs long, we'll chain additional commands together, and + # evenly distribute them amongst the first 1000. + cmds.sort() + chunks = [cmds[i:i + self.max_array_length] for i in + range(0, len(cmds), self.max_array_length)] + + results = [] + + # create a chained command by taking one command from each list. + # zip_longest() allows us to handle lists of different lengths, as the + # last chunk will always be of different length than 1000. + for tuple in zip_longest(*chunks): + # zip_longest() pads shorter lists with None. In our case, we + # don't want an additional command named 'None'. + chained_cmd = [x for x in list(tuple) if x is not None] + chained_cmd = ';'.join(chained_cmd) + results.append(chained_cmd) + + return results + + # assume for now that a corresponding zip file exists for each html + # file found. Assume for now that all html files will be found in a + # 'filtered_sequences' or 'trimmed_sequences' subdirectory. + # + # verify that the entire list of sample-ids found match what's + # expected. Since the list of expected ids is very small, we'll + # perform an exact comparison. + + def audit(self, sample_ids): + """ + Audit the results of a run. + :param sample_ids: A list of sample-ids that require results. + :return: A list of sample-ids that were not found. + """ + files_found = [] + + if self.suffix is None: + raise PipelineError("Audit() method called on base Job object.") + + for root, dirs, files in walk(self.output_path): + if 'zero_files' in root: + continue + if self.audit_folders is not None: + # let's check that any of the audit_folders is in root + if not [f for f in self.audit_folders if f in root]: + continue + files_found += [join(root, x) for x in files if + x.endswith(self.suffix)] + + found = [] + for sample_id in sample_ids: + for found_file in files_found: + # the trailing underscore is important as it can be assumed + # that all fastq.gz files will begin with sample_id followed + # by an '_', and then one or more additional parameters + # separated by underscores. This substring is unlikely to be + if basename(found_file).startswith('%s_' % sample_id): + found.append(sample_id) + break + + return sorted(list(set(found) ^ set(sample_ids))) + + def _toggle_force_job_fail(self): + if self.force_job_fail is True: + self.force_job_fail = False + else: + self.force_job_fail = True + + return self.force_job_fail + + def extract_project_names_from_fastq_dir(self, path_to_fastq_dir): + ''' + Returns list of based on a fastq path. + :param path_to_fastq_dir: Path to a nested dir containing fastq files. + :return: list of strings of the form PROJECT-NAME_QIITA-ID. + ''' + tmp = [] + + # given a nested directory containing fastq.gz files from any part + # of the SPP, get a list of paths to just the fastq files. + for root, dirs, files in walk(path_to_fastq_dir): + for file_name in files: + if file_name.endswith('.fastq.gz'): + if not file_name.startswith('Undetermined'): + # do not include the Undetermined files found in + # ConvertJob, because they do not contain a project + # name in their path, by definition. + # don't record the full_path w/filename, as we're + # not interested in the files themselves, just their + # basedirs(). + tmp.append(root) + + # break up the path into a set of unique directory names. at least + # some of these will be of the form PROJECT-NAME_QIITA-ID. Flatten + # out the list of lists into a single list. + tmp = [some_root.split('/') for some_root in tmp] + tmp = [dir_name for sub_list in tmp for dir_name in sub_list] + + # remove any duplicate entries from the list. + tmp = list(set(tmp)) + + # file-paths for fastq.gz files are going to include the names of + # standard directories e.g. 'ConvertJob', 'trimmed_sequences' as well + # as directories named PROJECT-NAME_QIITA-ID. Base Job() class is not + # aware of all the possibilities in the path supplied by the user. + # Hence, this method filters for names that fit the above format. + results = [] + for dir_name in tmp: + m = re.match(r'^(\w[\w\-_]*_\d{5})$', dir_name) + if m: + results.append(m.groups(0)[0]) + + return sorted(results) diff --git a/src/sequence_processing_pipeline/MultiQCJob.py b/src/sequence_processing_pipeline/MultiQCJob.py new file mode 100644 index 00000000..31f44703 --- /dev/null +++ b/src/sequence_processing_pipeline/MultiQCJob.py @@ -0,0 +1,226 @@ +from functools import partial +from jinja2 import Environment +from json import dumps +import logging +from os import listdir +from os.path import join, basename, exists, sep, split +from sequence_processing_pipeline.Job import Job, KISSLoader +from sequence_processing_pipeline.PipelineError import (PipelineError, + JobFailedError) +from sequence_processing_pipeline.util import determine_orientation +from re import sub + + +class MultiQCJob(Job): + def __init__(self, run_dir, output_path, raw_fastq_files_path, + processed_fastq_files_path, nprocs, nthreads, multiqc_path, + modules_to_load, qiita_job_id, queue_name, node_count, + wall_time_limit, jmem, pool_size, fastqc_root_path, + max_array_length, multiqc_config_file_path, is_amplicon): + super().__init__(run_dir, + output_path, + 'MultiQCJob', + [multiqc_path], + max_array_length, + modules_to_load=modules_to_load) + + self.nprocs = nprocs + self.nthreads = nthreads + self.multiqc_path = multiqc_path + self.queue_name = queue_name + self.node_count = node_count + self.wall_time_limit = wall_time_limit + self.jmem = jmem + self.qiita_job_id = qiita_job_id + self.pool_size = pool_size + self.raw_fastq_files_path = raw_fastq_files_path + self.processed_fastq_files_path = processed_fastq_files_path + self.multiqc_config_file_path = multiqc_config_file_path + self.is_amplicon = is_amplicon + self.fastqc_root_path = fastqc_root_path + + self.job_script_path = join(self.output_path, f"{self.job_name}.sh") + + # for projects that use sequence_processing_pipeline as a dependency, + # jinja_env must be set to sequence_processing_pipeline's root path, + # rather than the project's root path. + self.jinja_env = Environment(loader=KISSLoader('templates')) + + # bypass generating job script for a force-fail job, since it is + # not needed. + if not self.force_job_fail: + self._generate_job_script() + + def _find_projects(self): + find_paths = [self.processed_fastq_files_path] + + if not self.is_amplicon: + # avoid processing the raw fastq files for amplicon runs because + # they are identical to files in self.processed_fastq_files_path. + find_paths += [self.raw_fastq_files_path] + + projects = [] + + for fastq_files_path in find_paths: + for directory in listdir(fastq_files_path): + # confirm that this directory has data we want to show to + # multiqc. + + # generate a list of all files in this directory. + files = self._find_files(join(fastq_files_path, directory)) + + # filter out all files that aren't fastq.gz files. + files = [x for x in files if x.endswith('.fastq.gz')] + + for _file in files: + # split path into a list of folder names and the filename. + # filter out the contents of any folders that we don't + # want included in the report. + file_path, file_name = split(_file) + + ignore_this_file = [x for x in file_path.split(sep) + if x in ['zero_files', + 'only-adapter-filtered']] + + if ignore_this_file: + # if one or more of the folders are present in _file's + # path, then do not consider this file. + continue + + # lastly, only consider folders that contain at least one + # R1 file. + if determine_orientation(file_name) != 'R1': + continue + + # according to legacy behavior, if _file has met the above + # criteria, then add the value of directory as a project + # name. + projects.append(directory) + + if projects: + # remove duplicates + return sorted(set(projects)) + + raise PipelineError("There are no fastq files for MultiQCJob to " + "process") + + def _get_failed_indexes(self, job_id): + completed_files = self._find_files(self.output_path) + + # remove path and .completed extension from file-name. e.g.: + # 'project1_0', 'project1_1', ..., 'project1_n' + completed_files = [sub(r'\.completed$', '', basename(fp)) for fp in + completed_files if fp.endswith('.completed')] + + # extract the line number in the .detailed file corresponding to + # the command used for this job + completed_indexes = [int(cf.split('_')[-1]) for cf in completed_files] + + all_indexes = list(range(1, len(self.array_cmds) + 1)) + failed_indexes = sorted(set(all_indexes) - set(completed_indexes)) + + # generate log-file here instead of in run() where it can be + # unittested more easily. + if failed_indexes: + with open(join(self.output_path, 'logs', + f'failed_indexes_{job_id}.json'), 'w') as f: + f.write(dumps({'job_id': job_id, + 'failed_indexes': failed_indexes}, indent=2)) + + return failed_indexes + + def _get_commands(self): + # If project-level reports were not needed, MultiQC could simply be + # given the path to the run-directory itself and it will discover all + # of the relevant data files. Confirmed that for a one-project sample- + # sheet, this produces an equivalent report. + + array_cmds = [] + + for project in self._find_projects(): + # MultiQC doesn't like input paths that don't exist. Simply add + # all paths that do exist as input. + input_path_list = [] + + p_path = partial(join, self.fastqc_root_path, 'fastqc') + + for filter_type in ['bclconvert', 'trimmed_sequences', + 'filtered_sequences', 'amplicon']: + input_path_list.append(p_path(project, filter_type)) + + input_path_list.append(p_path(project, 'Reports')) + + p_path = partial(join, self.processed_fastq_files_path, project) + input_path_list.append(p_path('fastp_reports_dir', 'json')) + + # I don't usually see a json directory associated with raw data. + # It looks to be metadata coming directly off the machine, in the + # few instances I've seen it in /sequencing... + p_path = partial(join, self.raw_fastq_files_path, project) + input_path_list.append(p_path('json')) + + input_path_list = [x for x in input_path_list if exists(x)] + + cmd_head = ['multiqc', '-c', self.multiqc_config_file_path, + '--fullnames', '--force'] + + # --interactive graphs is set to True in MultiQC configuration + # file and hence this switch was redunant and now removed. + cmd_tail = ['-o', join(self.output_path, 'multiqc', project)] + + array_cmds.append(' '.join(cmd_head + input_path_list + cmd_tail)) + + # These commands are okay to execute in parallel because each command + # is limited to a specific project and each invocation creates its own + # multiqc/project output directory so there will not be collisions. + # These commands must be executed after FastQCJob has completed for + # FastQC report results to be included, however. + return array_cmds + + def _generate_job_script(self): + template = self.jinja_env.get_template("multiqc_job.sh") + + self.array_cmds = self._get_commands() + + job_name = f'{self.qiita_job_id}_{self.job_name}' + details_file_name = f'{self.job_name}.array-details' + array_details = join(self.output_path, details_file_name) + array_params = "1-%d%%%d" % (len(self.array_cmds), self.pool_size) + modules_to_load = ' '.join(self.modules_to_load) + + with open(self.job_script_path, mode="w", encoding="utf-8") as f: + f.write(template.render(job_name=job_name, + array_details=array_details, + queue_name=self.queue_name, + node_count=self.node_count, + nprocs=self.nprocs, + wall_time_limit=self.wall_time_limit, + mem_in_gb=self.jmem, + array_params=array_params, + output_path=self.output_path, + modules_to_load=modules_to_load)) + + # save the .details file as well + with open(array_details, 'w') as f: + f.write('\n'.join(self.array_cmds) + '\n') + + return self.job_script_path + + def run(self, callback=None): + try: + job_info = self.submit_job(self.job_script_path, + exec_from=self.log_path, + callback=callback) + except JobFailedError as e: + # When a job has failed, parse the logs generated by this specific + # job to return a more descriptive message to the user. + info = self.parse_logs() + # prepend just the message component of the Error. + info.insert(0, str(e)) + raise JobFailedError('\n'.join(info)) from None + + logging.debug(job_info) + + if self._get_failed_indexes(job_info['job_id']): + # raise error if list isn't empty. + raise PipelineError("MultiQCJob did not complete successfully.") diff --git a/src/sequence_processing_pipeline/NuQCJob.py b/src/sequence_processing_pipeline/NuQCJob.py new file mode 100644 index 00000000..3ed9c322 --- /dev/null +++ b/src/sequence_processing_pipeline/NuQCJob.py @@ -0,0 +1,534 @@ +from metapool import load_sample_sheet +from os import stat, makedirs, rename +from os.path import join, basename, dirname, exists, abspath, split +from sequence_processing_pipeline.Job import Job, KISSLoader +from sequence_processing_pipeline.PipelineError import (PipelineError, + JobFailedError) +from sequence_processing_pipeline.Pipeline import Pipeline +from shutil import move +import logging +from sequence_processing_pipeline.Commands import split_similar_size_bins +from sequence_processing_pipeline.util import iter_paired_files +from jinja2 import Environment +from glob import glob +import re +from sys import executable + + +logging.basicConfig(level=logging.DEBUG) + + +class NuQCJob(Job): + def __init__(self, fastq_root_dir, output_path, sample_sheet_path, + minimap_database_paths, queue_name, node_count, + wall_time_limit, jmem, fastp_path, minimap2_path, + samtools_path, modules_to_load, qiita_job_id, + max_array_length, known_adapters_path, movi_path, gres_value, + pmls_path, additional_fastq_tags, bucket_size=8, + length_limit=100, cores_per_task=4): + """ + Submit a slurm job where the contents of fastq_root_dir are processed + using fastp, minimap2, and samtools. Human-genome sequences will be + filtered out, if needed. + :param fastq_root_dir: Path to a dir of Fastq files, org. by project. + :param output_path: Path where all pipeline-generated files live. + :param sample_sheet_path: Path to a sample sheet file. + :param minimap_database_paths: Path to human genome databases in env. + :param queue_name: Torque queue name to use in running env. + :param node_count: Number of nodes to use in running env. + :param wall_time_limit: Hard wall-clock-time limit (in min) for procs. + :param jmem: String representing total memory limit for entire job. + :param fastp_path: The path to the fastp executable + :param minimap2_path: The path to the minimap2 executable + :param samtools_path: The path to the samtools executable + :param modules_to_load: A list of Linux module names to load + :param qiita_job_id: identify Torque jobs using qiita_job_id + :param known_adapters_path: The path to an .fna file of known adapters. + :param movi_path: The path to the Movi executable. + :param gres_value: Cluster-related parameter. + :param pmls_path: The path to the pmls script. + :param bucket_size: the size in GB of each bucket to process + :param length_limit: reads shorter than this will be discarded. + :param cores_per_task: Number of CPU cores per node to request. + :param additional_fastq_tags: A list of fastq tags to preserve during + filtering. + """ + super().__init__(fastq_root_dir, + output_path, + 'NuQCJob', + [fastp_path, minimap2_path, samtools_path], + max_array_length, + modules_to_load=modules_to_load) + self.sample_sheet_path = sample_sheet_path + self._file_check(self.sample_sheet_path) + metadata = self._process_sample_sheet() + self.sample_ids = metadata['sample_ids'] + self.project_data = metadata['projects'] + self.chemistry = metadata['chemistry'] + self.mmi_file_paths = minimap_database_paths + self.queue_name = queue_name + self.node_count = node_count + self.wall_time_limit = wall_time_limit + # raise an Error if jmem is not a valid floating point value. + self.jmem = str(int(jmem)) + self.fastp_path = fastp_path + self.minimap2_path = minimap2_path + self.samtools_path = samtools_path + self.qiita_job_id = qiita_job_id + self.suffix = 'fastq.gz' + self.movi_path = movi_path + self.gres_value = gres_value + self.pmls_path = pmls_path + self.additional_fastq_tags = additional_fastq_tags + self.audit_folders = ['filtered_sequences'] + + # for projects that use sequence_processing_pipeline as a dependency, + # jinja_env must be set to sequence_processing_pipeline's root path, + # rather than the project's root path. + self.jinja_env = Environment(loader=KISSLoader('templates')) + + self.counts = {} + self.known_adapters_path = known_adapters_path + self.bucket_size = bucket_size + self.length_limit = length_limit + + # NuQCJob() impl uses -c (--cores-per-task) switch instead of + # -n (--tasks-per-node). --cores-per-task requests the number of cpus + # per process. This is to support multithreaded jobs that require more + # than one cpu per task. All cores will be allocated on a single node. + # + # This is different than using -n + -N (number of nodes to request) + # because it's allowable to request more cores than are available on + # one node using this pair of switches (N nodes * n tasks per node). + self.cores_per_task = cores_per_task + + self.temp_dir = join(self.output_path, 'tmp') + makedirs(self.temp_dir, exist_ok=True) + + self.batch_prefix = f"hds-{self.qiita_job_id}" + self.minimum_bytes = 3100 + self.fastq_regex = re.compile(r'^(.*)_S\d{1,4}_L\d{3}_R\d_\d{3}' + r'\.fastq\.gz$') + self.interleave_fastq_regex = re.compile(r'^(.*)_S\d{1,4}_L\d{3}_R\d' + r'_\d{3}\.interleave\.fastq' + r'\.gz$') + self.html_regex = re.compile(r'^(.*)_S\d{1,4}_L\d{3}_R\d_\d{3}\.html$') + self.json_regex = re.compile(r'^(.*)_S\d{1,4}_L\d{3}_R\d_\d{3}\.json$') + + self._validate_project_data() + + def _validate_project_data(self): + # Validate project settings in [Bioinformatics] + for project in self.project_data: + if project['ForwardAdapter'] == 'NA': + project['ForwardAdapter'] = None + + if project['ReverseAdapter'] == 'NA': + project['ReverseAdapter'] = None + + if project['ForwardAdapter'] is None: + if project['ReverseAdapter'] is not None: + raise ValueError(("ForwardAdapter is declared but not " + "ReverseAdapter.")) + + if project['ReverseAdapter'] is None: + if project['ForwardAdapter'] is not None: + raise ValueError(("ReverseAdapter is declared but not " + "ForwardAdapter.")) + + if not isinstance(project['HumanFiltering'], bool): + raise ValueError("needs_adapter_trimming must be boolean.") + + def _filter_empty_fastq_files(self, filtered_directory, + empty_files_directory, + minimum_bytes): + ''' + Filters out and moves fastq files that are below threshold. + :param filtered_directory: + :param empty_files_directory: + :param minimum_bytes: + :return: + ''' + empty_list = [] + + files = glob(join(filtered_directory, f'*.{self.suffix}')) + + for r1, r2 in iter_paired_files(files): + full_path = join(filtered_directory, r1) + full_path_reverse = join(filtered_directory, r2) + if stat(full_path).st_size <= minimum_bytes or stat( + full_path_reverse).st_size <= minimum_bytes: + logging.debug(f'moving {full_path} and {full_path_reverse}' + f' to empty list.') + empty_list.append(full_path) + empty_list.append(full_path_reverse) + + if empty_list: + logging.debug(f'making directory {empty_files_directory}') + makedirs(empty_files_directory, exist_ok=True) + + for item in empty_list: + logging.debug(f'moving {item}') + move(item, empty_files_directory) + + def _move_helper(self, completed_files, regex, samples_in_project, dst): + files_to_move = [] + for fp in completed_files: + file_name = basename(fp) + substr = regex.search(file_name) + if substr is None: + raise ValueError(f"{file_name} does not follow naming " + "pattern.") + else: + # check if found substring is a member of this + # project. Note sample-name != sample-id + if substr[1] in samples_in_project: + if fp.endswith('.fastq.gz'): + # legacy QC'ed files were always denoted with + # 'trimmed' to distinguish them from raw files. + renamed_fp = fp.replace('.fastq.gz', + '.trimmed.fastq.gz') + rename(fp, renamed_fp) + # move file into destination w/new filename + files_to_move.append(renamed_fp) + else: + # move file into destination folder w/no namechange. + files_to_move.append(fp) + + for fp in files_to_move: + move(fp, dst) + + def _move_trimmed_files(self, project_name, output_path): + ''' + Given output_path, move all fastqs to a new subdir named project_name. + :param project_name: The name of the new folder to be created. + :param output_path: The path to scan for fastq files. + :return: None + ''' + + if exists(output_path): + pattern = f"{output_path}/*.fastq.gz" + + # this directory shouldn't already exist. + makedirs(join(output_path, project_name), exist_ok=False) + + sample_ids = [x[0] for x in self.sample_ids + if x[1] == project_name] + + for trimmed_file in list(glob(pattern)): + file_name = split(trimmed_file)[1] + substr = self.interleave_fastq_regex.search(file_name) + if substr is not None: + # only move the sample_ids in this project. + if substr[1] in sample_ids: + move(trimmed_file, join(output_path, project_name)) + else: + raise ValueError(f"'{output_path}' does not exist") + + def run(self, callback=None): + # now a single job-script will be created to process all projects at + # the same time, and intelligently handle adapter-trimming as needed + # as well as human-filtering. + + batch_location = join(self.temp_dir, self.batch_prefix) + + if self.force_job_fail: + batch_count = 0 + max_size = 0 + else: + batch_count, max_size = split_similar_size_bins(self.root_dir, + self.bucket_size, + batch_location) + + job_script_path = self._generate_job_script(max_size) + + self.counts[self.batch_prefix] = batch_count + + export_params = [f"PREFIX={batch_location}", + f"OUTPUT={self.output_path}", + f"TMPDIR={self.temp_dir}"] + + job_params = ['-J', self.batch_prefix, f'--array 1-{batch_count}', + '--export', ','.join(export_params)] + + # job_script_path formerly known as: + # process.multiprep.pangenome.adapter-filter.pe.sbatch + + try: + job_info = self.submit_job(job_script_path, + job_parameters=' '.join(job_params), + exec_from=self.log_path, + callback=callback) + except JobFailedError as e: + # When a job has failed, parse the logs generated by this specific + # job to return a more descriptive message to the user. + info = self.parse_logs() + # prepend just the message component of the Error. + info.insert(0, str(e)) + raise JobFailedError('\n'.join(info)) + + job_id = job_info['job_id'] + + self.mark_job_completed() + + logging.debug(f'NuQCJob {job_id} completed') + + for project in self.project_data: + project_name = project['Sample_Project'] + needs_human_filtering = project['HumanFiltering'] + source_dir = join(self.output_path, project_name) + pattern = f"{source_dir}/*.fastq.gz" + completed_files = list(glob(pattern)) + + # if the 'only-adapter-filtered' directory exists, move the files + # into a unique location so that files from multiple projects + # don't overwrite each other. + trimmed_only_path = join(self.output_path, + 'only-adapter-filtered') + + if exists(trimmed_only_path): + self._move_trimmed_files(project_name, trimmed_only_path) + + if needs_human_filtering is True: + filtered_directory = join(source_dir, 'filtered_sequences') + else: + filtered_directory = join(source_dir, 'trimmed_sequences') + + # create the properly named directory to move files to in + # in order to preserve legacy behavior. + makedirs(filtered_directory, exist_ok=True) + + # get the list of sample-names in this project. + samples_in_project = [x[0] for x in self.sample_ids + if x[1] == project_name] + + # Tissue_1_Mag_Hom_DNASe_RIBO_S16_L001_R2_001.fastq.gz + # Nislux_SLC_Trizol_DNASe_S7_L001_R2_001.fastq.gz + self._move_helper(completed_files, + self.fastq_regex, + samples_in_project, + filtered_directory) + + # once fastq.gz files have been moved into the right project, + # we now need to consider the html and json fastp_reports + # files. + old_html_path = join(self.output_path, 'fastp_reports_dir', 'html') + old_json_path = join(self.output_path, 'fastp_reports_dir', 'json') + + new_html_path = join(source_dir, 'fastp_reports_dir', 'html') + new_json_path = join(source_dir, 'fastp_reports_dir', 'json') + + makedirs(new_html_path, exist_ok=True) + makedirs(new_json_path, exist_ok=True) + + # move all html files underneath the subdirectory for this project. + pattern = f"{old_html_path}/*.html" + completed_htmls = list(glob(pattern)) + self._move_helper(completed_htmls, + # Tissue_1_Super_Trizol_S19_L001_R1_001.html + self.html_regex, + samples_in_project, + new_html_path) + + # move all json files underneath the subdirectory for this project. + pattern = f"{old_json_path}/*.json" + completed_jsons = list(glob(pattern)) + self._move_helper(completed_jsons, + # Tissue_1_Super_Trizol_S19_L001_R1_001.json + self.json_regex, + samples_in_project, + new_json_path) + + # now that files are separated by project as per legacy + # operation, continue normal processing. + empty_files_directory = join(source_dir, 'zero_files') + self._filter_empty_fastq_files(filtered_directory, + empty_files_directory, + self.minimum_bytes) + + self.mark_post_processing_completed() + + def _confirm_job_completed(self): + # since NuQCJob processes across all projects in a run, there isn't + # a need to iterate by project_name and job_id. + pattern = f"{self.output_path}/hds-{self.qiita_job_id}.*.completed" + completed_files = list(glob(pattern)) + if completed_files: + return True + + return False + + def _process_sample_sheet(self): + sheet = load_sample_sheet(self.sample_sheet_path) + + if not sheet.validate_and_scrub_sample_sheet(): + s = "Sample sheet %s is not valid." % self.sample_sheet_path + raise PipelineError(s) + + header = sheet.Header + chemistry = header['chemistry'] + + if header['Assay'] not in Pipeline.assay_types: + s = "Assay value '%s' is not recognized." % header['Assay'] + raise PipelineError(s) + + sample_ids = [] + for sample in sheet.samples: + sample_ids.append((sample['Sample_ID'], sample['Sample_Project'])) + + bioinformatics = sheet.Bioinformatics + + # reorganize the data into a list of dictionaries, one for each row. + # the ordering of the rows will be preserved in the order of the list. + lst = bioinformatics.to_dict('records') + + # human-filtering jobs are scoped by project. Each job requires + # particular knowledge of the project. + return {'chemistry': chemistry, + 'projects': lst, + 'sample_ids': sample_ids} + + def _generate_mmi_filter_cmds(self, working_dir): + initial_input = join(working_dir, "seqs.interleaved.fastq") + final_output = join(working_dir, "seqs.interleaved.filter_" + "alignment.fastq") + + cmds = [] + + tmp_file1 = join(working_dir, "foo") + tmp_file2 = join(working_dir, "bar") + + cores_to_allocate = int(self.cores_per_task / 2) + + # the default setting. + tags = "" + t_switch = "" + + if self.additional_fastq_tags: + # add tags for known metadata types that fastq files may have + # been annotated with. Samtools will safely ignore tags that + # are not present. + # NB: This doesn't appear to be true, actually. if there is + # a metadata element but it does not begin with 'BX', supplying + # '-T BX' will cause an error writing output to disk. + tags = " -T %s" % ','.join(self.additional_fastq_tags) + t_switch = " -y" + + for count, mmi_db_path in enumerate(self.mmi_file_paths): + if count == 0: + # prime initial state with unfiltered file and create first of + # two tmp files. + input = initial_input + output = tmp_file1 + elif count % 2 == 0: + # alternate between two tmp file names so that the input and + # output are never the same file. + input = tmp_file2 + output = tmp_file1 + else: + input = tmp_file1 + output = tmp_file2 + + cmds.append(f"minimap2 -2 -ax sr{t_switch} -t {cores_to_allocate} " + f"{mmi_db_path} {input} -a | samtools fastq -@ " + f"{cores_to_allocate} -f 12 -F 256{tags} > " + f"{output}") + + # rename the latest tmp file to the final output filename. + cmds.append(f"mv {output} {final_output}") + + # simple cleanup erases tmp files if they exist. + cmds.append(f"[ -e {tmp_file1} ] && rm {tmp_file1}") + cmds.append(f"[ -e {tmp_file2} ] && rm {tmp_file2}") + + return "\n".join(cmds) + + def _generate_job_script(self, max_bucket_size): + # bypass generating job script for a force-fail job, since it is + # not needed. + if self.force_job_fail: + return None + + job_script_path = join(self.output_path, 'process_all_fastq_files.sh') + template = self.jinja_env.get_template("nuqc_job.sh") + + job_name = f'{self.qiita_job_id}_{self.job_name}' + + html_path = join(self.output_path, 'fastp_reports_dir', 'html') + json_path = join(self.output_path, 'fastp_reports_dir', 'json') + + # get location of python executable in this environment. + # demux script should be present in the same location. + demux_path = join(dirname(executable), 'demux') + + if not exists(demux_path): + raise ValueError(f"{demux_path} does not exist.") + + # get this file location and add splitter as it should live there + splitter_binary = join( + dirname(abspath(__file__)), 'scripts', 'splitter') + if not exists(splitter_binary): + raise ValueError(f'{splitter_binary} does not exist.') + + # this method relies on an environment variable defined in nu_qc.sh + # used to define where unfiltered fastq files are and where temp + # files can be created. (${jobd}) + mmi_filter_cmds = self._generate_mmi_filter_cmds("${jobd}") + + with open(job_script_path, mode="w", encoding="utf-8") as f: + # the job resources should come from a configuration file + + # generate a string of linux system modules to load before + # processing begins. + mtl = ' '.join(self.modules_to_load) + + f.write(template.render(job_name=job_name, + queue_name=self.queue_name, + # should be 4 * 24 * 60 = 4 days + wall_time_limit=self.wall_time_limit, + mem_in_gb=self.jmem, + # Note NuQCJob now maps node_count to + # SLURM -N parameter to act like other + # Job classes. + # self.node_count should be 1 + node_count=self.node_count, + # cores-per-task (-c) should be 4 + cores_per_task=self.cores_per_task, + knwn_adpt_path=self.known_adapters_path, + output_path=self.output_path, + html_path=html_path, + json_path=json_path, + demux_path=demux_path, + temp_dir=self.temp_dir, + splitter_binary=splitter_binary, + modules_to_load=mtl, + length_limit=self.length_limit, + gres_value=self.gres_value, + movi_path=self.movi_path, + mmi_filter_cmds=mmi_filter_cmds, + pmls_path=self.pmls_path)) + + return job_script_path + + def parse_logs(self): + log_path = join(self.output_path, 'logs') + files = sorted(glob(join(log_path, '*'))) + msgs = [] + + # assume that the only possible files in logs directory are '.out' + # files and zero, one, or many 'seqs.movi.n.txt.gz' files. + # the latter may be present because the last step of a successful + # job is to rename and move this file into its final location while + # the logs directory is the default 'working' directory for this job + # as this ensures slurm.err and slurm.out files will always be in + # a known location. + + # for now, construct lists of both of these types of files. + output_logs = [x for x in files if x.endswith('.out')] + + for some_file in output_logs: + with open(some_file, 'r') as f: + msgs += [line.strip() for line in f.readlines() + if 'error:' in line.lower()] + + return msgs diff --git a/src/sequence_processing_pipeline/Pipeline.py b/src/sequence_processing_pipeline/Pipeline.py new file mode 100644 index 00000000..ae6db85d --- /dev/null +++ b/src/sequence_processing_pipeline/Pipeline.py @@ -0,0 +1,1037 @@ +from json import load as json_load +from json import loads as json_loads +from json.decoder import JSONDecodeError +from os import makedirs, listdir, walk +from os.path import join, exists, isdir, basename +from metapool import (load_sample_sheet, AmpliconSampleSheet, is_blank, + parse_project_name, SAMPLE_NAME_KEY, QIITA_ID_KEY, + PROJECT_SHORT_NAME_KEY, PROJECT_FULL_NAME_KEY, + CONTAINS_REPLICATES_KEY) +from metapool.plate import ErrorMessage, WarningMessage +from sequence_processing_pipeline.Job import Job +from sequence_processing_pipeline.PipelineError import PipelineError +import logging +from re import findall, search, match +import sample_sheet +import pandas as pd +from collections import defaultdict +from datetime import datetime +from xml.etree import ElementTree as ET +from metapool.prep import PREP_MF_COLUMNS + + +logging.basicConfig(format='%(asctime)s - %(message)s', level=logging.INFO) + +_PROJECT_NAME_KEY = 'project_name' + + +class InstrumentUtils(): + types = {'A': 'NovaSeq 6000', 'D': 'HiSeq 2500', 'FS': 'iSeq', + 'K': 'HiSeq 4000', 'LH': 'NovaSeq X Plus', 'M': 'MiSeq', + 'MN': 'MiniSeq', + # SN – RapidRun which is HiSeq 2500 + 'SN': 'RapidRun'} + + @staticmethod + def get_instrument_id(run_directory): + run_info = join(run_directory, 'RunInfo.xml') + + if not exists(run_info): + raise ValueError(f"'{run_info}' doesn't exist") + + with open(run_info) as f: + # Instrument element should appear in all valid RunInfo.xml + # files. + return ET.fromstring(f.read()).find('Run/Instrument').text + + @staticmethod + def get_instrument_type(run_directory): + # extract all letters at the beginning of the string, stopping + # at the first digit. + code = match(r"^(.*?)\d.*", + InstrumentUtils.get_instrument_id(run_directory)) + + if code is None: + raise ValueError("Could not determine instrument code") + else: + code = code.group(1) + + # map instrument code to a name string and return it, if possible. + try: + return InstrumentUtils.types[code] + except KeyError: + raise ValueError(f"Instrument code '{code}' is of unknown type") + + @staticmethod + def get_date(run_directory): + run_info = join(run_directory, 'RunInfo.xml') + + if not exists(run_info): + raise ValueError(f"'{run_info}' doesn't exist") + + with open(run_info) as f: + # Date element should appear in all valid RunInfo.xml + # files. + date_string = ET.fromstring(f.read()).find('Run/Date').text + + # date is recorded in RunInfo.xml in various formats. Iterate + # through all known formats until the date is properly parsed. + + # For now, assume timestamps w/Z are not actually in 'Zulu' or + # UTC time w/out confirming the machines were actually set for + # and/or reporting UTC time. + formats = ["%y%m%d", "%Y-%m-%dT%H:%M:%s", "%Y-%m-%dT%H:%M:%SZ", + "%m/%d/%Y %I:%M:%S %p"] + + for format in formats: + try: + date = datetime.strptime(date_string, format) + return str(date.date()) + except ValueError: + # assume ValueErrors are due to incorrect format, rather than + # incorrect value from the XML file. + pass + + raise ValueError(f"'{date_string}' could not be parsed") + + +class Pipeline: + _CONTROLS_SIF_SUFFIX = '_blanks.tsv' + + # TODO: replace these with spp_metadata package call based on qiimp2 + sif_header = [SAMPLE_NAME_KEY, 'collection_timestamp', 'elevation', + 'empo_1', 'empo_2', 'empo_3', + 'empo_4', 'env_biome', 'env_feature', + 'env_material', 'env_package', 'geo_loc_name', + 'host_subject_id', 'latitude', 'longitude', + 'sample_type', 'scientific_name', 'taxon_id', + 'description', 'title', 'dna_extracted', + 'physical_specimen_location', 'physical_specimen_remaining'] + + sif_defaults = [None, None, 193, + 'Control', 'Negative', 'Sterile water blank', + 'Sterile water blank', 'urban biome', 'research facility', + 'sterile water', 'misc environment', 'USA:CA:San Diego', + None, 32.5, -117.25, + 'control blank', 'metagenome', 256318, + None, None, 'TRUE', + 'UCSD', 'FALSE'] + + mapping_file_columns = {SAMPLE_NAME_KEY, 'barcode', 'center_name', + 'center_project_name', + 'experiment_design_description', + 'instrument_model', + 'library_construction_protocol', + 'platform', 'run_center', 'run_date', 'run_prefix', + 'runid', 'sample_plate', 'sequencing_meth', + 'linker', 'primer', 'primer_plate', 'well_id_384', + 'plating', 'extractionkit_lot', 'extraction_robot', + 'tm1000_8_tool', 'primer_date', 'mastermix_lot', + 'water_lot', 'processing_robot', 'tm300_8_tool', + 'tm50_8_tool', _PROJECT_NAME_KEY, 'orig_name', + 'well_description', 'pcr_primers', 'target_gene', + 'tm10_8_tool', 'target_subfragment', 'well_id_96'} + + METAGENOMIC_PTYPE = 'Metagenomic' + METATRANSCRIPTOMIC_PTYPE = 'Metatranscriptomic' + AMPLICON_PTYPE = 'Amplicon' + + pipeline_types = {METAGENOMIC_PTYPE, AMPLICON_PTYPE, + METATRANSCRIPTOMIC_PTYPE} + + METAGENOMIC_ATYPE = 'Metagenomic' + METATRANSCRIPTOMIC_ATYPE = 'Metatranscriptomic' + AMPLICON_ATYPE = 'TruSeq HT' + + assay_types = [AMPLICON_ATYPE, METAGENOMIC_ATYPE, METATRANSCRIPTOMIC_ATYPE] + + @staticmethod + def make_sif_fname(run_id, full_project_name): + # TODO: the problem with this structure is that there's no clear way + # to figure out, for an arbitrary sif fname, where the run id ends and + # where the project name begins because single underscores are used as + # internal elements in both run ids and project names :( + return f'{run_id}_{full_project_name}{Pipeline._CONTROLS_SIF_SUFFIX}' + + @staticmethod + def is_sif_fp(fp): + return fp.endswith(Pipeline._CONTROLS_SIF_SUFFIX) + + # get study_id from sif_file_name ...something_14385_blanks.tsv + @staticmethod + def get_qiita_id_from_sif_fp(fp): + fname = basename(fp) + temp_name = fname.replace(Pipeline._CONTROLS_SIF_SUFFIX, '') + + # This is a kind of hacky use of parse_project_name since + # it is passing in something that *ends in* a project name but is not + # all a project name (see above re no clear way to get just the + # project name out of the sif name without knowing the internal + # details of a project name format). So this is a bit of a hack, but at + # least it is limiting the number of places in the code that know the + # details of project name format. + hacky_name_pieces_dict = parse_project_name(temp_name) + return hacky_name_pieces_dict[QIITA_ID_KEY] + + def __init__(self, configuration_file_path, run_id, input_file_path, + output_path, qiita_job_id, pipeline_type, lane_number=None): + """ + Initialize Pipeline object w/configuration information. + :param configuration_file_path: Path to configuration.json file. + :param run_id: Used w/search_paths to locate input run_directory. + :param input_file_path: Path to sample-sheet or pre-prep file. + :param output_path: Path where all pipeline-generated files live. + :param qiita_job_id: Qiita Job ID creating this Pipeline. + :param pipeline_type: Pipeline type ('Amplicon', 'Metagenomic', etc.) + :param lane_number: (Optional) overwrite lane_number in input_file. + """ + if input_file_path is None: + raise PipelineError("user_input_file_path cannot be None") + + if pipeline_type not in Pipeline.pipeline_types: + raise PipelineError(f"'{type}' is not a valid pipeline type.") + + self.pipeline_type = pipeline_type + + self.configuration_file_path = configuration_file_path + + # along with configuration profiles, a 'general' configuration file + # is needed to provide the search paths to the run-directories. These + # are used to locate the run-directory specified and parse the required + # files to select the right configuration profile. + try: + f = open(configuration_file_path) + self.configuration = json_load(f) + f.close() + except TypeError: + raise PipelineError('configuration_file_path cannot be None') + except FileNotFoundError: + raise PipelineError(f'{configuration_file_path} does not ' + 'exist.') + except JSONDecodeError: + raise PipelineError(f'{configuration_file_path} is not a ' + 'valid json file') + + if run_id is None: + raise PipelineError('run_id cannot be None') + + for key in ['search_paths', 'archive_path', 'amplicon_search_paths', + 'profiles_path']: + if key not in self.configuration: + raise PipelineError(f"'{key}' is not a key in " + f"{self.configuration_file_path}") + + # If our extended validate() method discovers any warnings or + # Errors, it will raise a PipelineError and return them w/in the + # error message as a single string separated by '\n'. + self.warnings = [] + self._directory_check(output_path, create=False) + self.output_path = output_path + self.run_id = run_id + self.qiita_job_id = qiita_job_id + self.pipeline = [] + self.assay_type = None + + # this method will catch a run directory as well as its products + # directory, which also has the same name. Hence, return the + # shortest matching path as that will at least return the right + # path between the two. + results = [] + + if pipeline_type == Pipeline.AMPLICON_PTYPE: + self.search_paths = self.configuration['amplicon_search_paths'] + self.assay_type = Pipeline.AMPLICON_ATYPE + else: + self.search_paths = self.configuration['search_paths'] + + for search_path in self.search_paths: + logging.debug(f'Searching {search_path} for {self.run_id}') + for entry in listdir(search_path): + some_path = join(search_path, entry) + # ensure some_path never ends in '/' + some_path = some_path.rstrip('/') + if isdir(some_path) and some_path.endswith(self.run_id): + logging.debug(f'Found {some_path}') + results.append(some_path) + + if results: + results.sort(key=lambda s: len(s)) + self.run_dir = results[0] + else: + raise PipelineError(f"A run-dir for '{self.run_id}' could not be " + "found") + + # required files for successful operation + # both RTAComplete.txt and RunInfo.xml should reside in the root of + # the run directory. + required_files = ['RTAComplete.txt', 'RunInfo.xml'] + for some_file in required_files: + if not exists(join(self.run_dir, some_file)): + raise PipelineError("required file '%s' is not present." % + some_file) + + # verify that RunInfo.xml file is readable. + try: + fp = open(join(self.run_dir, 'RunInfo.xml')) + fp.close() + except PermissionError: + raise PipelineError('RunInfo.xml is present, but not readable') + + self.input_file_path = input_file_path + + if pipeline_type == Pipeline.AMPLICON_PTYPE: + # assume input_file_path references a pre-prep (mapping) file. + + self.mapping_file = self._validate_mapping_file(input_file_path) + # unlike _validate_sample_sheet() which returns a SampleSheet + # object that stores the path to the file it was created from, + # _validate_mapping_file() just returns a DataFrame. Store the + # path to the original mapping file itself as well. + + # create dummy sample-sheet + output_fp = join(output_path, 'dummy_sample_sheet.csv') + self.generate_dummy_sample_sheet(self.run_dir, output_fp) + self.dummy_sheet_path = output_fp + + # Optional lane_number parameter is ignored for Amplicon + # runs, as the only valid value is 1. + else: + if lane_number is not None: + # confirm that the lane_number is a reasonable value. + lane_number = int(lane_number) + if lane_number < 1 or lane_number > 8: + raise ValueError(f"'{lane_number}' is not a valid name" + " number") + + # overwrite sample-sheet w/DFSheets processed version + # with overwritten Lane number. + sheet = load_sample_sheet(input_file_path) + with open(input_file_path, 'w') as f: + sheet.write(f, lane=lane_number) + + # assume user_input_file_path references a sample-sheet. + self.sample_sheet = self._validate_sample_sheet(input_file_path) + self.mapping_file = None + + if self.assay_type is None: + # set self.assay_type for non-amplicon types. + assay_type = self.sample_sheet.Header['Assay'] + if assay_type not in Pipeline.assay_types: + raise ValueError(f"'{assay_type} is not a valid Assay type") + self.assay_type = assay_type + + self._configure_profile() + + def get_sample_sheet_path(self): + """ + Returns path to a sample-sheet or dummy sample-sheet for amplicon runs. + """ + if self.assay_type == Pipeline.AMPLICON_ATYPE: + # assume self.dummy_sheet_path has been created for amplicon runs. + return self.dummy_sheet_path + else: + # assume input_file_path is a sample-sheet for non-amplicon runs. + return self.input_file_path + + def get_software_configuration(self, software): + if software is None or software == "": + raise ValueError(f"'{software}' is not a valid value") + + key_order = ['profile', 'configuration', software] + + config = self.config_profile + + for key in key_order: + if key in config: + config = config[key] + else: + raise PipelineError(f"'{key}' is not defined in configuration") + + return config + + def identify_reserved_words(self, words): + ''' + Returns a list of words that should not appear as column names in any + project referenced in the Pipeline's sample-sheet/pre-prep file. + :param words: A list of words that may include reserved words. + :return: A list of words that are already reserved in upper, lower, + and mixed cases. + ''' + + # Only strings used as column names in pre-prep files are currently + # considered 'reserved' as loading a pre-prep file containing these + # column names will fail if one or more of the strings already appears + # as a column name in a study's sample metadata table. + + # This implementation assumes some understanding of metapool's impl, + # specifically how the proper set of prep-info file columns are + # generated. For now the functionality will be defined here as this + # area of metapool is currently in flux. + if self.pipeline_type == Pipeline.AMPLICON_PTYPE: + reserved = PREP_MF_COLUMNS + else: + # results will be dependent on SheetType and SheetVersion of + # the sample-sheet. Since all columns in a prep-info file are + # lower()ed before writing out to file, the word must be + # reserved in all case forms. e.g.: 'Sample_Well' and 'Sample_well' + # are both forms of 'sample_well'. + reserved = [x.lower() for x in + self.sample_sheet.CARRIED_PREP_COLUMNS] + \ + self.sample_sheet.GENERATED_PREP_COLUMNS + + return list(set([x.lower() for x in words]) & set(reserved)) + + def _configure_profile(self): + # extract the instrument type from self.run_dir and the assay type + # from self.sample_sheet (or self.mapping_file). + instr_type = InstrumentUtils.get_instrument_type(self.run_dir) + + # open the configuration profiles directory as specified by + # profiles_path in the configuration.json file. parse each json into + # a nested dictionary keyed by (instrument-type, assay-type) as + # specified by the values inside each json. + profile_dir = self.configuration['profiles_path'] + + if not exists(profile_dir): + raise ValueError(f"'{profile_dir}' doesn't exist") + + # profiles directory can be arbitrarily nested to help organize + # profiles; profiles can also be named arbitrarily. Non-JSON files + # such as notes can be in the directory as well. The only assertion + # is that all JSON files found will be of the profile format, discussed + # below. + profile_paths = [] + for root, dirs, files in walk(profile_dir): + for some_file in files: + some_path = join(root, some_file) + if some_path.endswith('.json'): + profile_paths.append(some_path) + + # There must be at least one valid profile for the Pipeline to + # continue operation. + if not profile_paths: + raise ValueError(f"'{profile_dir}' doesn't contain profile files") + + profiles = [] + + for profile_path in profile_paths: + with open(profile_path, 'r') as f: + # open each profile and perform minimum validation on its + # contents. + contents = json_load(f) + + # all files must contain a root element 'profile'. This helps + # to identify it as a profile, rather than another type of + # JSON file. + if 'profile' not in contents: + raise ValueError("'profile' is not an attribute in " + f"'{profile_path}'") + + # the 'profile' attribute must have a dictionary as its value. + # all profiles must contain 'instrument_type' and 'assay_type', + if 'instrument_type' not in contents['profile']: + raise ValueError("'instrument_type' is not an attribute " + f"in '{profile_path}'.profile") + + if 'assay_type' not in contents['profile']: + raise ValueError("'assay_type' is not an attribute " + f"in '{profile_path}'.profile") + + profiles.append(contents) + + selected_profile = None + + for profile in profiles: + i_type = profile['profile']['instrument_type'] + a_type = profile['profile']['assay_type'] + + if i_type == instr_type and a_type == self.assay_type: + selected_profile = profile + break + + if selected_profile is None: + raise ValueError(f"a matching profile ({instr_type}, " + f"{self.assay_type}) was not found. Please notify" + " an administrator") + + self.config_profile = selected_profile + + def _directory_check(self, directory_path, create=False): + if exists(directory_path): + logging.debug("directory '%s' exists." % directory_path) + else: + if create: + try: + makedirs(directory_path, exist_ok=True) + except OSError as e: + # this is a known potential error. Re-raise it as a + # PipelineError, so it gets handled in the same location + # as the others. + raise PipelineError(str(e)) + else: + raise PipelineError("directory_path '%s' does not exist." % + directory_path) + + def run(self, callback=None): + """ + Run all jobs added to Pipeline in the order they were added. + :param callback: Optional function to call and upstate status with. + :param callback(jid=): string identifying the current running process. + :param callback(status=): a string message or description. + :return: + """ + for job in self.pipeline: + job.run(callback=callback) + + def add(self, job): + """ + Add a job to the Pipeline + :param Job: A Job object + :return: None + """ + if isinstance(job, Job): + self.pipeline.append(job) + else: + raise PipelineError("object is not a Job object.") + + def _validate_sample_sheet(self, sample_sheet_path): + """ + Performs additional validation for sample-sheet on top of metapool. + :return: If successful, a valid sample-sheet. Raises descriptive + PipelineError() on all failures. Warning messages are + appended to self.warnings. + """ + # validate the sample-sheet using metapool package. + sheet = load_sample_sheet(sample_sheet_path) + + msgs = sheet.quiet_validate_and_scrub_sample_sheet() + + if any([isinstance(m, ErrorMessage) for m in msgs]): + # msgs will contain both ErrorMessages and WarningMessages. + # we want to identify if there are any messages and if so, create + # a separate list for them. An Error should only be raised on + # Error messages and in this case, all error messages should be + # concatenated. + errors = [x for x in msgs if isinstance(x, ErrorMessage)] + + if errors: + msgs = [str(x).replace('ErrorMessage: ', '') for x in msgs] + msgs = 'Sample-sheet contains errors:\n' + '\n'.join(msgs) + raise PipelineError(msgs) + else: + raise PipelineError('Cannot parse sample-sheet.') + else: + # perform extended validation based on required fields for + # seqpro, and other issues encountered. + bioinformatics = sheet.Bioinformatics + if 'library_construction_protocol' not in bioinformatics: + msgs.append(ErrorMessage("column 'library_construction_protoco" + "l' not found in Bioinformatics secti" + "on")) + if 'experiment_design_description' not in bioinformatics: + msgs.append(ErrorMessage("column 'experiment_design_descriptio" + "n' not found in Bioinformatics secti" + "on")) + + if sheet.Header['Assay'] not in Pipeline.assay_types: + msgs.append(ErrorMessage("Valid Assay values are " + f"{Pipeline.assay_types}")) + + # look for duplicate samples. metapool will allow two rows w/the + # same lane and sample_id if one or more other columns are + # different. However seqpro expects the tuple (lane, sample_id) to + # be unique for indexing. + unique_indexes = [] + for item in sheet.samples: + unique_index = f'{item.lane}_{item.sample_id}' + if unique_index in unique_indexes: + msgs.append(ErrorMessage("A sample already exists with la" + f"ne {item.lane} and sample-id " + f"{item.sample_id}")) + else: + unique_indexes.append(unique_index) + + errors = [x for x in msgs if isinstance(x, ErrorMessage)] + + if errors: + msgs = [str(x).replace('ErrorMessage: ', '') for x in msgs] + msgs = 'Sample-sheet contains errors:\n' + '\n'.join(msgs) + raise PipelineError(msgs) + + # return a valid sample-sheet, and preserve any warning + # messages + self.warnings += [str(x) for x in msgs if + isinstance(x, WarningMessage)] + return sheet + + def _validate_mapping_file(self, mapping_file_path): + """ + Performs validation for mapping-files. + :return: If successful, a valid mapping-file. Raises descriptive + PipelineError() on all failures. Warning messages are + appended to self.warnings. + """ + try: + df = pd.read_csv(mapping_file_path, delimiter='\t', dtype=str) + except pd.errors.ParserError: + raise PipelineError('Cannot parse mapping-file.') + + # first, detect any duplicate column names, regardless of any mixed- + # capitalization, and notify the user. + d = defaultdict(list) + for column in df.columns: + d[column.lower()].append(column) + + # generate a list of all unique column names that appear more than + # once, regardless of capitalization. Then generate a list containing + # lists of duplicate column names in their original case to report to + # the user. + dupes = [d[column] for column in + [col for col in d.keys() if len(d[col]) > 1]] + + if dupes: + # column-names are case-insensitive, and must be unique. + # return groups of duplicate column names (differentiated only by + # a different mixed-case) to the user. + raise PipelineError("Mapping-file contains duplicate columns: " + "%s" % ', '.join([str(tpl) for tpl in dupes])) + + # if columns are unique, determine if any columns are missing and/or + # unexpected and notify the user. + obs = set(df.columns.str.lower()) + + # Note that Pipeline.mapping_file_columns is expected to be all lower- + # case. + + # if an expected column is missing in observed, that is an error. + # Note that since a mapping-file is just a DataFrame, there isn't a + # distinction between a mapping-file that is missing n columns and has + # n additional columns and a dataframe that is not a mapping-file at + # all. This method assumes an external test has determined that the + # file is a mapping-file already. + missing_columns = Pipeline.mapping_file_columns - obs + if missing_columns: + raise PipelineError("Mapping-file is missing columns: " + "%s" % ', '.join(sorted(missing_columns))) + + # if an observed column is unexpected, that is a warning. + unexpected_columns = obs - Pipeline.mapping_file_columns + if unexpected_columns: + self.warnings += [("Mapping-file contains additional columns: " + "%s" % ', '.join(unexpected_columns))] + + # rename all columns to their lower-case versions. + # we will want to return this version to the user. + df.columns = df.columns.str.lower() + + return df + + def generate_sample_info_files(self, addl_info=None): + """ + Generate sample-information files in self.output_path. + :param addl_info: A df of (sample-name, project-name) pairs. + :return: A list of paths to sample-information-files. + """ + if self.pipeline_type == Pipeline.AMPLICON_PTYPE: + # Generate a list of BLANKs for each project. + temp_df = self.mapping_file[[SAMPLE_NAME_KEY, _PROJECT_NAME_KEY]] + temp_df_as_dicts_list = temp_df.to_dict(orient='records') + blanks_dicts_list = [] + for record in temp_df_as_dicts_list: + if is_blank(record[SAMPLE_NAME_KEY]): + new_record = record.copy() + proj_info = parse_project_name(record[_PROJECT_NAME_KEY]) + new_record.pop(_PROJECT_NAME_KEY) + new_record.update(proj_info) + blanks_dicts_list.append(new_record) + # endif this is a blank + # next record from mapping file df + df = pd.DataFrame(blanks_dicts_list) + else: + controls = self.sample_sheet.get_denormalized_controls_list() + df = pd.DataFrame(controls) + + projects = df[PROJECT_FULL_NAME_KEY].unique() + + paths = [] + for project in projects: + project_info = parse_project_name(project) + + curr_fname = self.make_sif_fname(self.run_id, project) + curr_fp = join(self.output_path, curr_fname) + paths.append(curr_fp) + + controls_in_proj_df = \ + df.loc[df[PROJECT_FULL_NAME_KEY] == project].copy() + + # TODO: remove this loop and replace with spp_metadata call at end + for column, default_value in zip(Pipeline.sif_header, + Pipeline.sif_defaults): + # ensure all defaults are converted to strings. + if default_value is not None: + controls_in_proj_df[column] = str(default_value) + # next metadata col/value + + # generate values for the four columns that must be + # determined from sample-sheet information. + TEMP_KEY = 'temp_name' + controls_in_proj_df['title'] = project_info[PROJECT_SHORT_NAME_KEY] + controls_in_proj_df[TEMP_KEY] = \ + controls_in_proj_df[SAMPLE_NAME_KEY].str.replace("_", ".") + controls_in_proj_df['host_subject_id'] = \ + controls_in_proj_df[TEMP_KEY] + controls_in_proj_df['description'] = controls_in_proj_df[TEMP_KEY] + controls_in_proj_df.drop(columns=[TEMP_KEY], inplace=True) + controls_in_proj_df['collection_timestamp'] = \ + self.get_date_from_run_id() + + controls_in_proj_df = controls_in_proj_df[Pipeline.sif_header] + controls_in_proj_df.to_csv(curr_fp, sep='\t', index=False) + + # spp_metadata.write_extended_spp_metadata( + # controls_in_proj_df, self.output_path, curr_fname) + + return paths + + def get_date_from_run_id(self): + # assume all run_ids begin with coded datestamp: + # 210518_... + # allow exception if substrings cannot convert to int + # or if array indexes are out of bounds. + year = int(self.run_id[0:2]) + 2000 + month = int(self.run_id[2:4]) + day = int(self.run_id[4:6]) + return f'{year}-{month}-{day}' + + def get_sample_ids(self): + ''' + Returns list of sample-ids sourced from sample-sheet or pre-prep file + :return: list of sample-ids + ''' + + # test for self.mapping_file, since self.sample_sheet will be + # defined in both cases. + if self.pipeline_type == Pipeline.AMPLICON_PTYPE: + results = list(self.mapping_file.sample_name) + else: + results = [x.Sample_ID for x in self.sample_sheet.samples] + + return results + + def get_sample_names(self, project_name=None): + ''' + Returns list of sample-names sourced from sample-sheet or pre-prep file + :param project_name: If None, return all sample-names. + :return: list of sample-names + ''' + # test for self.mapping_file, since self.sample_sheet will be + # defined in both cases. + if self.pipeline_type == Pipeline.AMPLICON_PTYPE: + return self._get_sample_names_from_mapping_file(project_name) + else: + return self._get_sample_names_from_sample_sheet(project_name) + + def _get_sample_names_from_sample_sheet(self, project_name): + if project_name is None: + return [x.Sample_Name for x in self.sample_sheet.samples] + else: + # Since the project-name is stored in an internal variable + # in a third-party library, convert the data structure to + # JSON using the exposed method and obtain from the result. + jsn = json_loads(self.sample_sheet.to_json()) + + results = [] + + for sample in jsn['Data']: + # handle case where project_name includes an appended qiita-id. + if sample['Sample_Project'] == project_name: + results.append(sample['Sample_Name']) + continue + + # handle case where project_name does not include a qiita-id. + # exact matching is required for cases where one project name + # in a sheet is a superset of another project in the same + # sheet. + m = search(r'^(.+)_(\d+)$', sample['Sample_Project']) + if m[1] == project_name: + results.append(sample['Sample_Name']) + + return results + + def get_orig_names_from_sheet(self, project_name): + if project_name is None: + results = [x.orig_name for x in self.sample_sheet.samples] + # eliminate inavoidable duplicates and sort. + return sorted(set(results)) + else: + # Since the project-name is stored in an internal variable + # in a third-party library, convert the data structure to + # JSON using the exposed method and obtain from the result. + jsn = json_loads(self.sample_sheet.to_json()) + + results = [] + + for sample in jsn['Data']: + # handle case where project_name includes an appended qiita-id. + if sample['Sample_Project'] == project_name: + results.append(sample['orig_name']) + continue + + # handle case where project_name does not include a qiita-id. + # exact matching is required for cases where one project name + # in a sheet is a superset of another project in the same + # sheet. + m = search(r'^(.+)_(\d+)$', sample['Sample_Project']) + if m[1] == project_name: + results.append(sample['orig_name']) + + return sorted(set(results)) + + def _get_sample_names_from_mapping_file(self, project_name): + if project_name is None: + return list(self.mapping_file.sample_name) + else: + df = self.mapping_file[self.mapping_file[_PROJECT_NAME_KEY] == + project_name] + return list(df[SAMPLE_NAME_KEY]) + + def _parse_project_name(self, project_name, short_names): + """ + Split fully-qualified project_name into a project_name and a qiita-id + if possible. Else return project_name and None. + :param project_name: A fully-qualified project name e.g: Feist_1161. + :param short_names: True returns orig. value. False returns name only. + :return: Tuple (project-name, qiita-id) + """ + # The main functionality of this method has been replaced by this call + # to metapool's parse_project_name, but I can't guarantee this function + # isn't used somewhere else in the codebase, so I'm not deleting it. + proj_info = parse_project_name(project_name) + + if short_names is False: + # return the fully-qualified project name w/Qiita ID. + return project_name, proj_info[QIITA_ID_KEY] + else: + # return the project's name and qiita_id + return proj_info[PROJECT_SHORT_NAME_KEY], proj_info[QIITA_ID_KEY] + + def get_project_info(self, short_names=False): + results = [] + + if self.pipeline_type == Pipeline.AMPLICON_PTYPE: + if CONTAINS_REPLICATES_KEY in self.mapping_file: + contains_replicates = True + else: + contains_replicates = False + + sample_project_map = {pn: _df.sample_name.values for pn, _df in + self.mapping_file.groupby(_PROJECT_NAME_KEY)} + projects_info = \ + {p: parse_project_name(p) for p in sample_project_map} + else: + projects_info = self.sample_sheet.get_projects_details() + + if short_names: + proj_name_key = PROJECT_SHORT_NAME_KEY + else: + proj_name_key = PROJECT_FULL_NAME_KEY + + for curr_project_info in projects_info.values(): + curr_dict = { + _PROJECT_NAME_KEY: curr_project_info[proj_name_key], + QIITA_ID_KEY: curr_project_info[QIITA_ID_KEY] + } + + if self.pipeline_type == Pipeline.AMPLICON_PTYPE: + # this is a mapping file: + curr_contains_reps = contains_replicates + else: + bi_df = self.sample_sheet.Bioinformatics + if CONTAINS_REPLICATES_KEY in bi_df.columns.tolist(): + # subselect rows in [Bioinformatics] based on whether they + # match the project name. + + # whether short_names or full_names are requested in the + # results, the match will always need to be against the + # full project name, which is what's expected to be in + # the Sample_Project column. + sample_project = curr_project_info[PROJECT_FULL_NAME_KEY] + df = bi_df.loc[bi_df['Sample_Project'] == sample_project] + # since only one project can match by definition, convert + # to dict and extract the needed value. + curr_contains_reps = df.iloc[0].to_dict()[ + CONTAINS_REPLICATES_KEY] + else: + curr_contains_reps = False + + curr_dict[CONTAINS_REPLICATES_KEY] = curr_contains_reps + results.append(curr_dict) + # next project + + return results + + @staticmethod + def is_mapping_file(mapping_file_path): + """ + Returns True if file follows basic mapping-file format. + """ + try: + df = pd.read_csv(mapping_file_path, delimiter='\t', dtype=str) + except pd.errors.ParserError: + return False + + # if the expected subset of columns required for a mapping-file + # are present, then consider this a mapping file, even if it's + # an invalid one. + exp_columns = frozenset({'barcode', 'tm1000_8_tool', + 'extraction_robot', 'pcr_primers'}) + + return set(df.columns.str.lower()).issuperset(exp_columns) + + @staticmethod + def is_sample_sheet(sample_sheet_path): + ''' + Returns True if file follows basic sample-sheet format. + ''' + + # Check to see if the file begins w/[Header]. + # Ignoring any legacy comments. + with open(sample_sheet_path, 'r') as f: + line = f.readline() + while line: + if line.startswith('#'): + line = f.readline() + else: + break + + if line.startswith('[Header]'): + return True + + return False + + def _generate_dummy_sample_sheet(self, first_read, last_read, + indexed_reads, dummy_sample_id): + # create object and initialize header + sheet = AmpliconSampleSheet() + sheet.Header['IEMFileVersion'] = '4' + sheet.Header['Date'] = '10/27/22' + sheet.Header['Workflow'] = 'GenerateFASTQ' + sheet.Header['Application'] = 'FASTQ Only' + sheet.Header['Assay'] = 'TruSeq HT' + sheet.Header['Description'] = 'test_run' + sheet.Header['Chemistry'] = 'Amplicon' + + # generate override_cycles string + tmp = [f"N{x['NumCycles']}" for x in indexed_reads] + tmp = ';'.join(tmp) + override_cycles = f"Y{first_read};{tmp};Y{last_read}" + + # set Reads and Settings according to input values + # we'll get this from the code on the server + sheet.Reads = [first_read, last_read] + sheet.Settings['OverrideCycles'] = override_cycles + sheet.Settings['MaskShortReads'] = '1' + sheet.Settings['CreateFastqForIndexReads'] = '1' + + dummy_samples = {'Sample_ID': dummy_sample_id, + 'Sample_Plate': '', + 'Sample_Well': '', + 'I7_Index_ID': '', + 'index': '', + 'I5_Index_ID': '', + 'index2': '' + } + sheet.add_sample(sample_sheet.Sample(dummy_samples)) + + # contacts won't matter for the dummy sample-sheet. + contacts = [['c2cowart@ucsd.edu', 'SomeProject'], + ['antgonza@gmail.com', 'AnotherProject']] + + # we'll get these from input parameters as well. + contacts = pd.DataFrame(columns=['Email', 'Sample_Project'], + data=contacts) + sheet.Contact = contacts + + # add a dummy sample. + samples = [[dummy_sample_id, 'NA', 'NA', + 'FALSE', 'FALSE', '14782']] + + samples = pd.DataFrame(columns=['Project', 'ForwardAdapter', + 'ReverseAdapter', 'PolyGTrimming', + 'HumanFiltering', 'QiitaID'], + data=samples) + + sheet.Bioinformatics = samples + + return sheet + + def generate_dummy_sample_sheet(self, run_dir, output_fp): + if exists(run_dir): + reads = self.process_run_info_file(join(run_dir, 'RunInfo.xml')) + else: + raise ValueError("run_dir %s not found." % run_dir) + + # assumptions are first and last reads are non-indexed and there + # are always two. Between them there is either 1 or 2 indexed + # reads. If this is not true, raise an Error. + + if len(reads) < 3 or len(reads) > 4: + # there must be a first and last read w/a minimum of one read + # in the middle and maximum two in the middle. + raise ValueError("RunInfo.xml contains abnormal reads.") + + first_read = reads.pop(0) + last_read = reads.pop() + + if (first_read['IsIndexedRead'] is True or + last_read['IsIndexedRead'] is True): + raise ValueError("RunInfo.xml contains abnormal reads.") + + # confirm the interior read(s) are indexed ones. + for read in reads: + if read['IsIndexedRead'] is False: + raise ValueError("RunInfo.xml contains abnormal reads.") + + dummy_sample_id = basename(run_dir) + '_SMPL1' + + sheet = self._generate_dummy_sample_sheet(first_read['NumCycles'], + last_read['NumCycles'], + reads, dummy_sample_id) + + with open(output_fp, 'w') as f: + sheet.write(f, 1) + + def process_run_info_file(self, run_info_fp): + def process_reads(reads): + # extract all read elements as a list. + # the contents of each Read element are highly regular. + # for now, process w/out installing xml2dict or other + # library into Qiita env. + found = findall('', reads) + + results = [] + for item in found: + attributes = item.split(' ') + d = {} + for attribute in attributes: + k, v = attribute.split('=') + if k in ['NumCycles', 'Number']: + v = int(v.strip('"')) + elif k in ['IsIndexedRead']: + v = v.strip('"') + v = False if v == 'N' else True + else: + raise ValueError("Unknown key: %s" % k) + d[k] = v + results.append(d) + + return results + + with open(run_info_fp, 'r') as f: + s = f.read() + reads = search('(.+?)', s.replace('\n', '')) + if reads: + result = reads.group(1) + else: + raise ValueError("Cannot extract read information") + return process_reads(result) diff --git a/src/sequence_processing_pipeline/PipelineError.py b/src/sequence_processing_pipeline/PipelineError.py new file mode 100644 index 00000000..d604546f --- /dev/null +++ b/src/sequence_processing_pipeline/PipelineError.py @@ -0,0 +1,29 @@ +class PipelineError(Exception): + def __init__(self, message=None): + self.message = message + super().__init__(self.message) + + +class JobFailedError(PipelineError): + # Occurs when a successfully-submitted job as failed. + def __init__(self, message=None): + self.message = message + super().__init__(self.message) + + +class ExecFailedError(PipelineError): + # Occurs when an executed command returns w/an error, which is defined as + # the command returning a value not zero and not an acceptable non-zero + # value. + def __init__(self, message=None): + self.message = message + super().__init__(self.message) + + +class LogParsingError(PipelineError): + # Occurs when an executed command returns w/an error, which is defined as + # the command returning a value not zero and not an acceptable non-zero + # value. May or may not be useful. + def __init__(self, message=None): + self.message = message + super().__init__(self.message) diff --git a/src/sequence_processing_pipeline/SeqCountsJob.py b/src/sequence_processing_pipeline/SeqCountsJob.py new file mode 100644 index 00000000..d41d62f5 --- /dev/null +++ b/src/sequence_processing_pipeline/SeqCountsJob.py @@ -0,0 +1,271 @@ +from collections import defaultdict +from .Job import Job, KISSLoader +from .PipelineError import JobFailedError +from glob import glob +from jinja2 import Environment +from metapool import load_sample_sheet +from os import walk +from os.path import join, split +import logging +import pandas as pd +from sequence_processing_pipeline.util import determine_orientation + + +logging.basicConfig(level=logging.DEBUG) + + +class SeqCountsJob(Job): + def __init__(self, run_dir, output_path, queue_name, + node_count, wall_time_limit, jmem, modules_to_load, + qiita_job_id, max_array_length, files_to_count_path, + sample_sheet_path, cores_per_task=4): + """ + ConvertJob provides a convenient way to run bcl-convert or bcl2fastq + on a directory BCL files to generate Fastq files. + :param run_dir: The 'run' directory that contains BCL files. + :param output_path: Path where all pipeline-generated files live. + :param queue_name: The name of the Torque queue to use for processing. + :param node_count: The number of nodes to request. + :param wall_time_limit: A hard time limit (in min) to bound processing. + :param jmem: String representing total memory limit for entire job. + :param modules_to_load: A list of Linux module names to load + :param qiita_job_id: identify Torque jobs using qiita_job_id + :param max_array_length: A hard-limit for array-sizes + :param files_to_count_path: A path to a list of file-paths to count. + :param sample_sheet_path: A path to the sample-sheet. + :param cores_per_task: (Optional) # of CPU cores per node to request. + """ + super().__init__(run_dir, + output_path, + 'SeqCountsJob', + [], + max_array_length, + modules_to_load=modules_to_load) + + self.queue_name = queue_name + self.node_count = node_count + self.wall_time_limit = wall_time_limit + self.cores_per_task = cores_per_task + + # raise an Error if jmem is not a valid floating point value. + self.jmem = str(int(jmem)) + self.qiita_job_id = qiita_job_id + self.jinja_env = Environment(loader=KISSLoader('templates')) + + self.job_name = (f"seq_counts_{self.qiita_job_id}") + self.files_to_count_path = files_to_count_path + self.sample_sheet_path = sample_sheet_path + + with open(self.files_to_count_path, 'r') as f: + lines = f.readlines() + lines = [x.strip() for x in lines] + lines = [x for x in lines if x != ''] + self.file_count = len(lines) + + def run(self, callback=None): + job_script_path = self._generate_job_script() + params = ['--parsable', + f'-J {self.job_name}', + f'--array 1-{self.file_count}'] + try: + self.job_info = self.submit_job(job_script_path, + job_parameters=' '.join(params), + exec_from=None, + callback=callback) + + logging.debug(f'SeqCountsJob Job Info: {self.job_info}') + except JobFailedError as e: + # When a job has failed, parse the logs generated by this specific + # job to return a more descriptive message to the user. + info = self.parse_logs() + # prepend just the message component of the Error. + info.insert(0, str(e)) + raise JobFailedError('\n'.join(info)) + + self.mark_job_completed() + + self._aggregate_counts(self.sample_sheet_path) + + self.mark_post_processing_completed() + + logging.debug(f'SeqCountJob {self.job_info["job_id"]} completed') + + def _generate_job_script(self): + job_script_path = join(self.output_path, "seq_counts.sbatch") + template = self.jinja_env.get_template("seq_counts.sbatch") + + # got to make files_to_count.txt and put it in the output directory + + with open(job_script_path, mode="w", encoding="utf-8") as f: + f.write(template.render({ + "job_name": "seq_counts", + "wall_time_limit": self.wall_time_limit, + "mem_in_gb": self.jmem, + "node_count": self.node_count, + "cores_per_task": self.cores_per_task, + "queue_name": self.queue_name, + "file_count": self.file_count, + "files_to_count_path": self.files_to_count_path, + "output_path": self.output_path + })) + + return job_script_path + + def parse_logs(self): + # overrides Job.parse_logs() w/tailored parse for specific logs. + files = sorted(glob(join(self.log_path, '*.err'))) + msgs = [] + + for some_file in files: + with open(some_file, 'r') as f: + msgs += [line for line in f.readlines() + if line.startswith("[E::stk_size]")] + + return [msg.strip() for msg in msgs] + + def _aggregate_counts_by_file(self): + # aggregates sequence & bp counts from a directory of log files. + + def extract_metadata(log_output_file_path): + """ + extracts sequence & bp counts from individual log files. + """ + with open(log_output_file_path, 'r') as f: + lines = f.readlines() + lines = [x.strip() for x in lines] + if len(lines) != 2: + raise ValueError( + "error processing %s" % log_output_file_path) + _dir, _file = split(lines[0]) + seq_counts, base_pairs = lines[1].split('\t') + return _dir, _file, int(seq_counts), int(base_pairs) + + results = defaultdict(dict) + + for root, dirs, files in walk(self.log_path): + for _file in files: + if _file.endswith('.out'): + log_output_file = join(root, _file) + _dir, _file, seq_counts, base_pairs = \ + extract_metadata(log_output_file) + + results[_file] = { + 'seq_counts': seq_counts, + 'base_pairs': base_pairs + } + + return results + + def _aggregate_counts(self, sample_sheet_path): + """ + Aggregate results by sample_ids and write to file. + Args: + sample_sheet_path: + + Returns: None + """ + def get_metadata(sample_sheet_path): + sheet = load_sample_sheet(sample_sheet_path) + + lanes = [] + + if sheet.validate_and_scrub_sample_sheet(): + results = {} + + for sample in sheet.samples: + sample_name = sample['Sample_Name'] + sample_id = sample['Sample_ID'] + lanes.append(sample['Lane']) + results[sample_id] = sample_name + + lanes = list(set(lanes)) + + if len(lanes) != 1: + raise ValueError( + "More than one lane is declared in sample-sheet") + + return results, lanes[0] + + # get lane number and sample-sheet names and ids + samples, lane = get_metadata(sample_sheet_path) + + # aggregate results by filename + by_files = self._aggregate_counts_by_file() + + # the per-sample-fastqs will be named according to sample-id. Generate + # a list of the sample-ids defined in the sample-sheet and sort them + # from longest to shortest. This allows us to match sample-ids to + # files correctly even when some sample-ids are subsets of longer + # sample-ids e.g.: 'T_LS_7_15_15B_SRE' and 'T_LS_7_15_15B'. This is + # important as SeqCounts is intended to count directories of fastq + # files that don't necessarily obey the standard Illumina naming + # convention e.g: samplename_S1_L001_R1_001.fastq.gz. + sample_ids = list(samples.keys()) + sample_ids.sort(reverse=True, key=len) + + results = defaultdict(list) + + # generate a list of file names to associate with sample-ids. + # only count forward and reverse reads. don't count I? or any other + # type of file present. + file_names = [x for x in list(by_files.keys()) if + determine_orientation(x) in ['R1', 'R2']] + + for sample_id in sample_ids: + found = [x for x in file_names if x.startswith(sample_id)] + + if len(found) == 0: + # zero file matches for a sample_id means that a per-sample + # fastq file was not generated at the stage referenced by the + # paths in self.files_to_count_path. For example, a per-sample + # fastq file may not have been generated by bcl-convert for a + # particular sample, or the filtered sample may be of zero- + # length. These things are normal operation and any error is + # going to be logged by those Job() objects. It's okay that + # a match wasn't found for a given sample_id defined in the + # sample-sheet. + continue + + if len(found) != 2: + # Raise an error if more or less than two matches are found + # for a given sample-id because this our output must be the + # total sequence count for forward and reverse reads. + raise ValueError("Multiple file matches for sample-id " + f"'{sample_id}' found: {found}") + + # remove the found elements from the list of files so they're + # not associated with additional sample-ids in a subsequent + # loop iteration. + file_names = list(set(file_names) - set(found)) + + results[sample_id] = found + + # output the results in CSV format. + sample_ids = [] + raw_reads_r1r2 = [] + lanes = [] + + for sample_id in results: + sample_ids.append(sample_id) + found = results[sample_id] + seq_counts = 0 + + for _file in found: + seq_counts += by_files[_file]['seq_counts'] + + raw_reads_r1r2.append(seq_counts) + lanes.append(lane) + + df = pd.DataFrame(data={'Sample_ID': sample_ids, + 'raw_reads_r1r2': raw_reads_r1r2, + 'Lane': lanes}) + + df.set_index(['Sample_ID', 'Lane'], verify_integrity=True) + + # sort results into a predictable order for testing purposes + df = df.sort_values(by='Sample_ID') + + result_path = join(self.output_path, 'SeqCounts.csv') + df.to_csv(result_path, index=False, sep=",") + + return result_path diff --git a/src/sequence_processing_pipeline/TRIntegrateJob.py b/src/sequence_processing_pipeline/TRIntegrateJob.py new file mode 100644 index 00000000..71644b8c --- /dev/null +++ b/src/sequence_processing_pipeline/TRIntegrateJob.py @@ -0,0 +1,186 @@ +from os.path import join +from .Job import Job, KISSLoader +from .PipelineError import JobFailedError +import logging +from jinja2 import Environment +from .Pipeline import Pipeline +from .PipelineError import PipelineError +from metapool import load_sample_sheet +from os import makedirs, walk +from shutil import copyfile +from collections import defaultdict +import re + + +logging.basicConfig(level=logging.DEBUG) + + +class TRIntegrateJob(Job): + def __init__(self, run_dir, output_path, sample_sheet_path, queue_name, + node_count, wall_time_limit, jmem, modules_to_load, + qiita_job_id, integrate_script_path, sil_path, raw_fastq_dir, + reference_base, reference_map, cores_per_task): + """ + ConvertJob provides a convenient way to run bcl-convert or bcl2fastq + on a directory BCL files to generate Fastq files. + :param run_dir: The 'run' directory that contains BCL files. + :param output_path: Path where all pipeline-generated files live. + :param sample_sheet_path: The path to a sample-sheet. + :param queue_name: The name of the Torque queue to use for processing. + :param node_count: The number of nodes to request. + :param wall_time_limit: A hard time limit (in min) to bound processing. + :param jmem: String representing total memory limit for entire job. + :param modules_to_load: A list of Linux module names to load + :param qiita_job_id: identify Torque jobs using qiita_job_id + :param integrate_script_path: None + :param sil_path: A path to a confidential file mapping C5xx, adapters. + :param reference_base: None + :param reference_map: None + :param cores_per_task: # of CPU cores per node to request. + """ + super().__init__(run_dir, + output_path, + 'TRIntegrateJob', + [], + # max_array_length and self.max_array_length are + # not used by TRIntegrateJob. + -1, + modules_to_load=modules_to_load) + + self.sample_sheet_path = sample_sheet_path + self._file_check(self.sample_sheet_path) + metadata = self._process_sample_sheet() + self.sample_ids = metadata['sample_ids'] + self.queue_name = queue_name + self.node_count = node_count + self.wall_time_limit = wall_time_limit + self.cores_per_task = cores_per_task + self.integrate_script_path = integrate_script_path + self.sil_path = sil_path + self.raw_fastq_dir = raw_fastq_dir + self.tmp_dir = join(self.output_path, 'tmp') + + self.reference_base = reference_base + self.reference_map = reference_map + + # raise an Error if jmem is not a valid floating point value. + self.jmem = str(int(jmem)) + self.qiita_job_id = qiita_job_id + self.sample_count = len(self.sample_ids) + self.jinja_env = Environment(loader=KISSLoader('templates')) + self.job_name = (f"integrate_{self.qiita_job_id}") + + with open(self.sil_path, 'r') as f: + # obtain the number of unique barcode_ids as determined by + # TellReadJob() in order to set up an array job of the + # proper length. + lines = f.readlines() + lines = [x.strip() for x in lines] + lines = [x for x in lines if x != ''] + self.barcode_id_count = len(lines) + + def run(self, callback=None): + job_script_path = self._generate_job_script() + + # copy sil_path to TRIntegrate working directory and rename to a + # predictable name. + copyfile(self.sil_path, + join(self.output_path, 'sample_index_list.txt')) + + makedirs(self.tmp_dir) + + params = ['--parsable', + f'-J {self.job_name}', + f'--array 1-{self.sample_count}'] + try: + self.job_info = self.submit_job(job_script_path, + job_parameters=' '.join(params), + exec_from=None, + callback=callback) + + logging.debug(f'TRIntegrateJob Job Info: {self.job_info}') + except JobFailedError as e: + # When a job has failed, parse the logs generated by this specific + # job to return a more descriptive message to the user. + info = self.parse_logs() + # prepend just the message component of the Error. + info.insert(0, str(e)) + raise JobFailedError('\n'.join(info)) + + self.mark_job_completed() + + logging.debug(f'TRIntegrateJob {self.job_info["job_id"]} completed') + + def _process_sample_sheet(self): + sheet = load_sample_sheet(self.sample_sheet_path) + + if not sheet.validate_and_scrub_sample_sheet(): + s = "Sample sheet %s is not valid." % self.sample_sheet_path + raise PipelineError(s) + + header = sheet.Header + chemistry = header['chemistry'] + + if header['Assay'] not in Pipeline.assay_types: + s = "Assay value '%s' is not recognized." % header['Assay'] + raise PipelineError(s) + + sample_ids = [] + for sample in sheet.samples: + sample_ids.append((sample['Sample_ID'], sample['Sample_Project'])) + + bioinformatics = sheet.Bioinformatics + + # reorganize the data into a list of dictionaries, one for each row. + # the ordering of the rows will be preserved in the order of the list. + lst = bioinformatics.to_dict('records') + + # human-filtering jobs are scoped by project. Each job requires + # particular knowledge of the project. + return {'chemistry': chemistry, + 'projects': lst, + 'sample_ids': sample_ids} + + def _generate_job_script(self): + job_script_path = join(self.output_path, 'integrate_test.sbatch') + template = self.jinja_env.get_template("integrate.sbatch") + + with open(job_script_path, mode="w", encoding="utf-8") as f: + f.write(template.render({ + "job_name": "integrate", + "wall_time_limit": self.wall_time_limit, + "mem_in_gb": self.jmem, + "node_count": self.node_count, + "cores_per_task": self.cores_per_task, + "integrate_script_path": self.integrate_script_path, + "queue_name": self.queue_name, + "barcode_id_count": self.barcode_id_count, + "raw_fastq_dir": self.raw_fastq_dir, + "tmp_dir": self.tmp_dir, + "output_dir": self.output_path})) + + return job_script_path + + def audit(self): + def map_barcode_id_to_sample_id(barcode_id): + for s_id, _, b_id in self.sample_ids: + if barcode_id == b_id: + return s_id + + integrated = defaultdict(list) + for root, dirs, files in walk(join(self.output_path, 'integrated')): + for _file in files: + m = re.match(r"(C5\d\d)\.([R,I]\d)\.fastq.gz", _file) + if m: + barcode_id, read = m.groups(1) + integrated[barcode_id].append(read) + + # a sample was processed successfully if all three expected reads are + # present. + failed = [] + for barcode_id in integrated: + # we expect only the following read/orientations. + if not set(integrated[barcode_id]) == {'I1', 'R1', 'R2'}: + failed.append(map_barcode_id_to_sample_id(barcode_id)) + + return sorted(failed) diff --git a/src/sequence_processing_pipeline/TellReadJob.py b/src/sequence_processing_pipeline/TellReadJob.py new file mode 100644 index 00000000..251327b2 --- /dev/null +++ b/src/sequence_processing_pipeline/TellReadJob.py @@ -0,0 +1,207 @@ +from os.path import join +from .Job import Job, KISSLoader +from .PipelineError import JobFailedError +import logging +from jinja2 import Environment +from .Pipeline import Pipeline +from .PipelineError import PipelineError +from metapool import load_sample_sheet +from os import walk +import re +from collections import defaultdict + + +logging.basicConfig(level=logging.DEBUG) + + +class TellReadJob(Job): + def __init__(self, run_dir, output_path, sample_sheet_path, queue_name, + node_count, wall_time_limit, jmem, modules_to_load, + qiita_job_id, reference_base, + reference_map, sing_script_path, cores_per_task): + """ + ConvertJob provides a convenient way to run bcl-convert or bcl2fastq + on a directory BCL files to generate Fastq files. + :param run_dir: The 'run' directory that contains BCL files. + :param output_path: Path where all pipeline-generated files live. + :param sample_sheet_path: The path to a sample-sheet. + :param queue_name: The name of the Torque queue to use for processing. + :param node_count: The number of nodes to request. + :param wall_time_limit: A hard time limit (in min) to bound processing. + :param jmem: String representing total memory limit for entire job. + :param modules_to_load: A list of Linux module names to load + :param qiita_job_id: identify Torque jobs using qiita_job_id + :param reference_base: None + :param reference_map: None + :param cores_per_task: (Optional) # of CPU cores per node to request. + """ + super().__init__(run_dir, + output_path, + 'TellReadJob', + [], + 1, + modules_to_load=modules_to_load) + + self.sample_sheet_path = sample_sheet_path + self._file_check(self.sample_sheet_path) + metadata = self._process_sample_sheet() + self.sample_ids = metadata['sample_ids'] + self.queue_name = queue_name + self.node_count = node_count + self.wall_time_limit = wall_time_limit + self.cores_per_task = cores_per_task + + self.reference_base = reference_base + self.reference_map = reference_map + + # raise an Error if jmem is not a valid floating point value. + self.jmem = str(int(jmem)) + self.qiita_job_id = qiita_job_id + self.jinja_env = Environment(loader=KISSLoader('templates')) + self.sing_script_path = sing_script_path + + sheet = load_sample_sheet(self.sample_sheet_path) + lane = sheet.samples[0].Lane + + # force self.lane_number to be int. raise an Error if it's not. + tmp = int(lane) + if tmp < 1 or tmp > 8: + raise ValueError(f"'{tmp}' is not a valid lane number") + self.lane_number = tmp + + self.job_name = (f"{self.qiita_job_id}-tellread") + + def run(self, callback=None): + job_script_path = self._generate_job_script() + + # everything is in the job script so there are no additional params. + params = [] + + try: + self.job_info = self.submit_job(job_script_path, + job_parameters=' '.join(params), + exec_from=None, + callback=callback) + + logging.debug(f'TellReadJob Job Info: {self.job_info}') + except JobFailedError as e: + # When a job has failed, parse the logs generated by this specific + # job to return a more descriptive message to the user. + # TODO: We need more examples of failed jobs before we can create + # a parser for the logs. + # info = self.parse_logs() + # prepend just the message component of the Error. + # info.insert(0, str(e)) + info = str(e) + raise JobFailedError('\n'.join(info)) + + self.mark_job_completed() + + logging.debug(f'TellReadJob {self.job_info["job_id"]} completed') + + def _process_sample_sheet(self): + sheet = load_sample_sheet(self.sample_sheet_path) + + if not sheet.validate_and_scrub_sample_sheet(): + s = "Sample sheet %s is not valid." % self.sample_sheet_path + raise PipelineError(s) + + header = sheet.Header + chemistry = header['chemistry'] + + if header['Assay'] not in Pipeline.assay_types: + s = "Assay value '%s' is not recognized." % header['Assay'] + raise PipelineError(s) + + sample_ids = [] + for sample in sheet.samples: + sample_ids.append((sample['Sample_ID'], + sample['Sample_Project'], + sample['barcode_id'])) + + bioinformatics = sheet.Bioinformatics + + # reorganize the data into a list of dictionaries, one for each row. + # the ordering of the rows will be preserved in the order of the list. + lst = bioinformatics.to_dict('records') + + # human-filtering jobs are scoped by project. Each job requires + # particular knowledge of the project. + return {'chemistry': chemistry, + 'projects': lst, + 'sample_ids': sample_ids} + + def _generate_job_script(self): + job_script_path = join(self.output_path, 'tellread_test.sbatch') + template = self.jinja_env.get_template("tellread.sbatch") + + # generate a comma separated list of sample-ids from the tuples stored + # in self.sample_ids. + + # NB: Proposed sample-sheets will have traditional Sample_ID and + # Sample_Name columns as well as a new value named barcode_id. It's + # this column that will contain the 'C50n' values needed to be + # supplied to tellread. Later we will use this mapping to rename the + # files from C50n...fastq.gz to sample-name...fastq.gz. + samples = ','.join([id[2] for id in self.sample_ids]) + + # since we haven't included support for reference_map yet, whenever a + # reference is not included, the mapping against the list of sample_ids + # is ['NONE', 'NONE', ..., 'NONE']. + refs = ','.join(['NONE' for _ in self.sample_ids]) + + extra = "" + + with open(job_script_path, mode="w", encoding="utf-8") as f: + f.write(template.render({ + "job_name": "tellread", + "wall_time_limit": self.wall_time_limit, + "mem_in_gb": self.jmem, + "node_count": self.node_count, + "cores_per_task": self.cores_per_task, + "queue_name": self.queue_name, + "sing_script_path": self.sing_script_path, + "modules_to_load": ' '.join(self.modules_to_load), + "lane": f"s_{self.lane_number}", + # NB: Note that we no longer create a sub-directory under the + # working directory for TellRead to create all its output + # folders and files. This means it is creating folders and + # files in the same directory that has our sbatch script and + # logs directory. Currently there are no name collisions, + # however. + "output": self.output_path, + "rundir_path": self.root_dir, + "samples": samples, + "refs": refs, + "extra": extra + })) + + return job_script_path + + def audit(self): + # this overriden audit method does not need sample-ids passed as a + # parameter because this job is already aware of what samples should + # be present and more importantly, how they map to barcode_ids. + def map_barcode_id_to_sample_id(barcode_id): + for s_id, _, b_id in self.sample_ids: + if barcode_id == b_id: + return s_id + + corrected = defaultdict(list) + for root, dirs, files in walk(join(self.output_path, 'Full')): + for _file in files: + m = re.match(r"TellReadJob_(.\d)_(C\d\d\d).fastq.gz.corrected." + r"err_barcode_removed.fastq", _file) + if m: + read, barcode_id = m.groups(1) + corrected[barcode_id].append(read) + + # a sample was processed successfully if all three expected reads are + # present. + failed = [] + for barcode_id in corrected: + # we expect only the following read/orientations. + if not set(corrected[barcode_id]) == {'I1', 'R1', 'R2'}: + failed.append(map_barcode_id_to_sample_id(barcode_id)) + + return sorted(failed) diff --git a/src/sequence_processing_pipeline/__init__.py b/src/sequence_processing_pipeline/__init__.py new file mode 100644 index 00000000..e69de29b diff --git a/src/sequence_processing_pipeline/aggregate_counts.py b/src/sequence_processing_pipeline/aggregate_counts.py new file mode 100644 index 00000000..ace90212 --- /dev/null +++ b/src/sequence_processing_pipeline/aggregate_counts.py @@ -0,0 +1,40 @@ +from os import walk +from sys import argv +from os.path import join, split +from json import dumps + + +def extract_metadata(log_output_file_path): + with open(log_output_file_path, 'r') as f: + lines = f.readlines() + lines = [x.strip() for x in lines] + if len(lines) != 2: + raise ValueError("error processing %s" % log_output_file_path) + _dir, _file = split(lines[0]) + seq_counts, base_pairs = lines[1].split('\t') + return _dir, _file, int(seq_counts), int(base_pairs) + + +def aggregate_counts(fp): + results = {} + + for root, dirs, files in walk(fp): + for _file in files: + if _file.endswith('.out'): + log_output_file = join(root, _file) + _dir, _file, seq_counts, base_pairs = \ + extract_metadata(log_output_file) + + if _dir not in results: + results[_dir] = {} + + results[_dir][_file] = {'seq_counts': seq_counts, + 'base_pairs': base_pairs} + + return results + + +if __name__ == '__main__': + results = aggregate_counts(argv[1]) + with open(argv[2], 'w') as f: + print(dumps(results, indent=2), file=f) diff --git a/src/sequence_processing_pipeline/contrib/create_picklist.py b/src/sequence_processing_pipeline/contrib/create_picklist.py new file mode 100644 index 00000000..a1d6a1d0 --- /dev/null +++ b/src/sequence_processing_pipeline/contrib/create_picklist.py @@ -0,0 +1,72 @@ +import os +# from metapool.metapool import * +from sys import argv +import pandas as pd +import matplotlib.pyplot as plt +from metapool.metapool import (read_survival, make_2D_array, + calculate_iseqnorm_pooling_volumes, + format_pooling_echo_pick_list) +import seaborn as sns + +input_sheet_filename = argv[1] + +plate_df_w_reads = pd.read_csv(input_sheet_filename, sep='\t') +plate_df_w_reads['Blank'] = [True if 'blank' in s.lower() else False + for s in plate_df_w_reads['Sample_Name']] +reads_column = 'read_counts' + +well_col = 'Sample_Well' +assert reads_column in plate_df_w_reads.columns + +f, ((ax1, ax2), (ax3, ax4)) = plt.subplots(nrows=2, ncols=2, figsize=(8, 8)) +# evenness plot +rmax = int(round(plate_df_w_reads[reads_column].max(), -2)) + +foo = read_survival(plate_df_w_reads.loc[plate_df_w_reads['Blank'] is True, + reads_column], + label='Blanks', + rmax=rmax) + +bar = read_survival(plate_df_w_reads.loc[plate_df_w_reads['Blank'] is False, + reads_column], + label='Samples', + rmax=rmax) + +survival_df = pd.concat([foo, bar]) + +ax3.set_xlabel(reads_column) +ax3.set_ylabel('Samples') +survival_df.plot(color=['coral', 'steelblue'], ax=ax1) +ax1.set_xlabel(reads_column) +ax1.set_ylabel('Samples') + +# Histogram +sns.histplot(plate_df_w_reads[reads_column], ax=ax3) + +# Boxplot +sns.boxplot(x="Blank", y=reads_column, data=plate_df_w_reads, ax=ax4) +sns.stripplot(x="Blank", y=reads_column, data=plate_df_w_reads, ax=ax4, + size=3, color='black', alpha=0.5) + +plt.tight_layout() +plt.savefig(input_sheet_filename + '.comboplot.pdf') + +pdfn = calculate_iseqnorm_pooling_volumes(plate_df_w_reads, + dynamic_range=20, + normalization_column=reads_column) +plt.savefig(input_sheet_filename + '.normalizedplot.pdf') + +vols = make_2D_array(pdfn, + data_col='iSeq normpool volume', + well_col=well_col).astype(float) + +# Write the picklist as .csv +picklist_fp = input_sheet_filename + '.picklist.csv' + +if os.path.isfile(picklist_fp): + print("Warning! This file exists already.") + +picklist = format_pooling_echo_pick_list(vols, max_vol_per_well=30000) + +with open(picklist_fp, 'w') as f: + f.write(picklist) diff --git a/src/sequence_processing_pipeline/contrib/integrate-indices-np.py b/src/sequence_processing_pipeline/contrib/integrate-indices-np.py new file mode 100644 index 00000000..b1be83a6 --- /dev/null +++ b/src/sequence_processing_pipeline/contrib/integrate-indices-np.py @@ -0,0 +1,332 @@ +# Why +# 1) cloudspades requires the index reads be inline in the record header +# 2) Ariadne requires the data are sorted by the barcodes +# +# Inlining is easy. Sorting is complex as the amount of data is large, and +# the ordering stems is determined external to the data being sorted. To +# determine order, all barcodes must be read in to gather the complete +# barcode <-> record association; if only partial data is read then +# associations to barcodes may be missed, and we cannot perform an insertion +# sort efficiently as we're writing to disk. Once we know an order for the +# records, we (currently) read in the entirety of the subsequent data (R1 then +# R2), reorder, and write. Performing this in blocks to minimize memory may be +# possible, but we have to assume access is random as a grouping barcode +# may be with any record along the file. +# +# A variety of approaches were considered, including: +# - indexing portions in a hashtable, reading inputs multiple times, and +# writing in blocks. This was tested in both rust and python. The amount of +# memory was large, and keeping it under control would be many many many +# passes over data on disk or in memory +# - using pandas to do the grouping, which possibly avoids the memory burden +# of a hashmap. it didn't +# - using mmap files. No go, these are large and we have to walk over them +# a lot. +# +# Parsing this stuff adds a lot of overhead in Python. It will add some, if not +# a lot, in rust as well -- our test data had 65M sequences. So the current +# approach operates in the raw file data itself, using regex's to parse +# individual records. We use numpy for sorting and getting record orders. +# This is memory expensive but so far much less than the other approaches tried +# and it does not require multiple passes over files. We bottleneck on write +# IO, so to mitigate that, we are using a parallel gzip (pgzip), which still +# bottlenecks but gets better throughput. +# +# There probably are smarter ways to do this to reduce the memory burden. +# Right now, it's O(N) where N is the number of records. We load R1 and R2 +# separately though so we at least halve the memory use. As for doing it +# faster, at the moment we appear to saturate time on gzip. Easiest solution +# would be to increase the number of threads, but then again, this process +# is expected to run in an array, and filesystem can only take so much. +# +# In addition to the inline tests, md5 checks to verify all record IDs are +# present in both R1 / R2, and relative to original input. Spot checks on +# an arbitrary set of records were performed on R1 / R2 to verify no apparent +# unusual modification. And spot checks were performed to verify that correct +# barcodes are incorporating as expected in output. +# +# author: Daniel McDonald (d3mcdonald@eng.ucsd.edu) +import numpy as np +import click +import re +import io +import pgzip +import gzip + + +RECORD = re.compile(rb'@\S+\n[ATGCN]+\n\+\n\S+\n') +BARCODE = re.compile(rb'@\S+\n([ATGCN]+)\n\+\n\S+\n') + + +def gather_order(i1_in_fp): + """Determine record order + + This is a fancy way of saying: get all the barcodes, and sort them. + + We return the order of the sorted records, the unique barcodes, + and the bounds for what barcode associated with what record + """ + # determine barcode length + _ = i1_in_fp.readline() + b = i1_in_fp.readline() + rec_len = len(b.strip()) + i1_in_fp.seek(0) + + # we need larger data in memory later anyway... + i1 = i1_in_fp.read() + start = 0 + end = len(i1) + + # get the number of records. we completely assume non-multiline fastq here + newlines = i1.count(b'\n') + assert newlines % 4 == 0 + barcodes = np.empty(newlines // 4, dtype='|S%d' % rec_len) + + # walk all index records + # grab each barcode + idx = 0 + while start < end: + barcode_result = BARCODE.search(i1, pos=start) + barcode = barcode_result.groups()[0] + assert len(barcode) == rec_len # get angry if the barcode is weird + + barcodes[idx] = barcode + idx += 1 + start = barcode_result.end() + + # we no longer need the raw data so let's toss it + del i1 + + # determine the record order of a lexicographic sort + # gather the unique barcodes so we can use them later, and the bounding + # points in the sorted set + record_order = barcodes.argsort() + barcodes = barcodes[record_order] + unique_barcodes, barcode_bounds = np.unique(barcodes, return_index=True) + + return record_order, unique_barcodes, barcode_bounds + + +def test_gather_order(): + i1data = [b'@foo', b'ATGC', b'+', b'!!!!', + b'@bar', b'TTGG', b'+', b'!!!!', + b'@baz', b'ATGC', b'+', b'!!!!', + b'@oof', b'TTTT', b'+', b'!!!!', + b'@rab', b'TTGG', b'+', b'!!!!', + b'@zab', b'TTTT', b'+', b'!!!!', + b'@ofo', b'TTTT', b'+', b'!!!!', b''] + + i1 = io.BytesIO(b'\n'.join(i1data)) + order, unique, bounds = gather_order(i1) + + exp_order = np.array([0, 2, 1, 4, 3, 5, 6]) + exp_unique = np.array([b'ATGC', b'TTGG', b'TTTT']) + exp_bounds = np.array([0, 2, 4]) + + assert (order == exp_order).all() + assert (unique == exp_unique).all() + assert (bounds == exp_bounds).all() + + +def troll_and_write(order, unique, bounds, in_, out_): + """Walk over the raw data, spit out barcode amended records in order + + - read all data + - get index boundaries for each record + - pull out each record in order according to the barcode data + - associate the barcode + - write + """ + + data = in_.read() + boundaries = np.empty([order.size, 2], dtype=np.uint64) + + stop = 0 + for idx in range(order.size): + rec = RECORD.search(data, pos=stop) + start, stop = rec.span() + boundaries[idx] = np.array([start, stop], dtype=np.uint64) + + current_barcode_idx = 0 + current_barcode = unique[current_barcode_idx] + current_barcode_bound_end = bounds[current_barcode_idx + 1] + + for order_idx, record_idx in enumerate(order): + if order_idx >= current_barcode_bound_end: + current_barcode_idx += 1 + + if current_barcode_idx >= bounds.size: + raise ValueError("should not happen?") + current_barcode = unique[current_barcode_idx] + + if current_barcode_idx + 1 >= bounds.size: + # run to the end + current_barcode_bound_end = order.size + else: + current_barcode_bound_end = bounds[current_barcode_idx + 1] + + start, stop = boundaries[record_idx] + record = data[start:stop] + + # in a one-off, these might pass by chance. It would be real weird + # for them to always pass for all records in a large file. + # n.b., b'foo'[0] is int, because yay, so we use a slice to maintain + # a human readable character to test against as most mortals haven't + # memorized the ascii table + assert record[:1] == b'@' + assert record[-1:] == b'\n' + + with_barcode = insert_barcode(record, current_barcode) + out_.write(with_barcode) + + +def test_troll_and_write(): + i1data = [b'@foo', b'ATGC', b'+', b'!!!!', + b'@bar', b'TTGG', b'+', b'!!!!', + b'@baz', b'ATGC', b'+', b'!!!!', + b'@oof', b'TTTT', b'+', b'!!!!', + b'@rab', b'TTGG', b'+', b'!!!!', + b'@zab', b'TTTT', b'+', b'!!!!', + b'@ofo', b'TTTT', b'+', b'!!!!', b''] + + i1 = io.BytesIO(b'\n'.join(i1data)) + order, unique, bounds = gather_order(i1) + + # we assume records are in the same order, as that has previously been + # observed w/ tellread and is the normal expectation + r1data = [b'@foo', b'AATGC', b'+', b'!!!!!', + b'@bar', b'ATTGG', b'+', b'!!!!!', + b'@baz', b'AATGC', b'+', b'!!!!!', + b'@oof', b'ATTTT', b'+', b'!!!!!', + b'@rab', b'ATTGG', b'+', b'!!!!!', + b'@zab', b'ATTTT', b'+', b'!!!!!', + b'@ofo', b'ATTTT', b'+', b'!!!!!', b''] + r1 = io.BytesIO(b'\n'.join(r1data)) + r1out = io.BytesIO() + troll_and_write(order, unique, bounds, r1, r1out) + r1out.seek(0) + + r1exp = [b'@foo BX:Z:ATGC-1', b'AATGC', b'+', b'!!!!!', + b'@baz BX:Z:ATGC-1', b'AATGC', b'+', b'!!!!!', + b'@bar BX:Z:TTGG-1', b'ATTGG', b'+', b'!!!!!', + b'@rab BX:Z:TTGG-1', b'ATTGG', b'+', b'!!!!!', + b'@oof BX:Z:TTTT-1', b'ATTTT', b'+', b'!!!!!', + b'@zab BX:Z:TTTT-1', b'ATTTT', b'+', b'!!!!!', + b'@ofo BX:Z:TTTT-1', b'ATTTT', b'+', b'!!!!!', + b''] + r1exp = b'\n'.join(r1exp) + assert r1exp == r1out.read() + + +def create_tag(t): + return b'BX:Z:%s-1' % t + + +def create_tag_no_suffix(t): + return b'BX:Z:%s' % t + + +def insert_barcode(record, barcode): + """Get the current ID, smash the needed tag in""" + # @foo\nATGC\n+\n!!!!\n + id_, remainder = record.split(b'\n', 1) + tag = create_tag(barcode) + return b'%s %s\n%s' % (id_, tag, remainder) + + +def readfq(fp): + if fp.mode == 'rb': + strip = bytes.strip + else: + strip = str.strip + + id_ = iter(fp) + seq = iter(fp) + dumb = iter(fp) + qual = iter(fp) + for rec in zip(id_, seq, dumb, qual): + yield list(map(strip, rec)) + + +def writefq(rec, out): + for item in rec: + out.write(item) + out.write(b'\n') + + +@click.group() +def cli(): + pass + + +@cli.command() +def tests(): + test_gather_order() + test_troll_and_write() + + +@cli.command() +@click.option('--r1-in', type=click.Path(exists=True), required=True) +@click.option('--r2-in', type=click.Path(exists=True), required=True) +@click.option('--i1-in', type=click.Path(exists=True), required=True) +@click.option('--r1-out', type=click.Path(exists=False), required=True) +@click.option('--r2-out', type=click.Path(exists=False), required=True) +@click.option('--threads', type=int, required=False, default=1) +@click.option('--no-sort', is_flag=True, default=False) +def integrate(r1_in, r2_in, i1_in, r1_out, r2_out, threads, no_sort): + r1_in_fp = open(r1_in, 'rb') + r2_in_fp = open(r2_in, 'rb') + i1_in_fp = open(i1_in, 'rb') + + if no_sort: + r1_out_fp = gzip.open(r1_out, mode='wb') + r2_out_fp = gzip.open(r2_out, mode='wb') + + r1_sniff = r1_in_fp.readline().strip() + r2_sniff = r2_in_fp.readline().strip() + r1_in_fp.seek(0) + r2_in_fp.seek(0) + + # outputs from tellread don't seem to have orientation information + # some downstream programs hate this, so let's add if needed. + if r1_sniff.endswith(b'/1'): + if not r2_sniff.endswith(b'/2'): + raise ValueError('unexpected endings: ' + f'{r1_sniff.decode("utf-8")} ' + f'{r2_sniff.decode("utf-8")}') + orient_r1 = '' + orient_r2 = '' + else: + assert b'/1' not in r1_sniff + + orient_r1 = b'/1' + orient_r2 = b'/2' + + for (r1, r2, i1) in zip(*map(readfq, [r1_in_fp, r2_in_fp, i1_in_fp])): + assert r1[0] == r2[0] + assert r1[0] == i1[0] + + tag = create_tag_no_suffix(i1[1]) + r1[0] = b"%s%s %s" % (r1[0], orient_r1, tag) + r2[0] = b"%s%s %s" % (r2[0], orient_r2, tag) + writefq(r1, r1_out_fp) + writefq(r2, r2_out_fp) + r1_out_fp.close() + r2_out_fp.close() + else: + # 200MB is what they use in their readme... + r1_out_fp = pgzip.open(r1_out, mode='wb', thread=threads, + blocksize=2*10**8) + r2_out_fp = pgzip.open(r2_out, mode='wb', thread=threads, + blocksize=2*10**8) + + order, unique, bounds = gather_order(i1_in_fp) + + for in_, out_ in zip([r1_in_fp, r2_in_fp], [r1_out_fp, r2_out_fp]): + troll_and_write(order, unique, bounds, in_, out_) + in_.close() + out_.close() + + +if __name__ == '__main__': + cli() diff --git a/src/sequence_processing_pipeline/contrib/plot_counts.py b/src/sequence_processing_pipeline/contrib/plot_counts.py new file mode 100644 index 00000000..ecab9e49 --- /dev/null +++ b/src/sequence_processing_pipeline/contrib/plot_counts.py @@ -0,0 +1,27 @@ +import matplotlib.pyplot as plt +import re +import sys +import os +import pandas as pd + +ex = re.compile(r'_I1_(C5\d\d).fastq.gz.corrected.err_barcode_removed.fastq') + +# remove total line from wc +data = [x.strip().split(' ') for x in open(sys.argv[1])][:-1] +plotdata = [(ex.search(i).groups()[0], int(v) / 4) for v, i in data] +sheetdata = dict(plotdata) + +ordered = sorted(plotdata, key=lambda x: x[1]) +f = plt.figure(figsize=(16, 8)) +plt.bar([i for i, _ in ordered], [v for _, v in ordered]) +plt.ylabel('I1 reads') +plt.xticks(list(range(len(ordered))), [i for i, _ in ordered], rotation=90) +plt.savefig(sys.argv[3] + '/counts.pdf') + +sheet = pd.read_csv(sys.argv[2], dtype=str) +sheet = sheet[~sheet['Lane'].isnull()] +sheet['read_counts'] = [sheetdata[i] for i in sheet['Barcode_ID']] +name = os.path.basename(sys.argv[2]).rsplit('.', 1)[0] +newname = name + '.read_counts.tsv' + +sheet.to_csv(sys.argv[3] + '/' + newname, sep='\t', index=False, header=True) diff --git a/src/sequence_processing_pipeline/fastp_known_adapters_formatted.fna b/src/sequence_processing_pipeline/fastp_known_adapters_formatted.fna new file mode 100644 index 00000000..712a83c7 --- /dev/null +++ b/src/sequence_processing_pipeline/fastp_known_adapters_formatted.fna @@ -0,0 +1,468 @@ +>Illumina_TruSeq_Adapter_Read_1 +AGATCGGAAGAGCACACGTCTGAACTCCAGTCA +>Illumina_TruSeq_Adapter_Read_2 +AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT +>Illumina_Small_RNA_Adapter_Read_2 +GATCGTCGGACTGTAGAACTCTGAACGTGTAGA +>Illumina_DpnII_expression_PCR_Primer_2_|_>Illumina_NlaIII_expression_PCR_Primer_2_|_>Illumina_Small_RNA_PCR_Primer_2_|_>Illumina_DpnII_Gex_PCR_Primer_2_|_>Illumina_NlaIII_Gex_PCR_Primer_2 +AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA +>Illumina_RNA_PCR_Primer +AATGATACGGCGACCACCGAGATCTACACGTTCAGAGTTCTACAGTCCGA +>TruSeq_Universal_Adapter_|_>PrefixPE/1_|_>PCR_Primer1_|_>Illumina_Single_End_PCR_Primer_1_|_>Illumina_Paried_End_PCR_Primer_1_|_>Illumina_Multiplexing_PCR_Primer_1.01_|_>TruSeq_Universal_Adapter_|_>TruSeq_Universal_Adapter_|_>PrefixPE/1_|_>PCR_Primer1 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+CAAGCAGAAGACGGCATACGAGATTCAAGTGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA +>RNA_PCR_Primer,_Index_46 +CAAGCAGAAGACGGCATACGAGATTCGGGAGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA +>RNA_PCR_Primer,_Index_40 +CAAGCAGAAGACGGCATACGAGATTCTGAGGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA +>RNA_PCR_Primer,_Index_15 +CAAGCAGAAGACGGCATACGAGATTGACATGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA +>RNA_PCR_Primer,_Index_32 +CAAGCAGAAGACGGCATACGAGATTGAGTGGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA +>RNA_PCR_Primer,_Index_48 +CAAGCAGAAGACGGCATACGAGATTGCCGAGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA +>Illumina_PCR_Primer_Index_4 +CAAGCAGAAGACGGCATACGAGATTGGTCAGTGACTGGAGTTC +>RNA_PCR_Primer,_Index_4 +CAAGCAGAAGACGGCATACGAGATTGGTCAGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA +>RNA_PCR_Primer,_Index_36 +CAAGCAGAAGACGGCATACGAGATTGTTGGGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA +>RNA_PCR_Primer,_Index_13 +CAAGCAGAAGACGGCATACGAGATTTGACTGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA +>RNA_PCR_Primer,_Index_19 +CAAGCAGAAGACGGCATACGAGATTTTCACGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA +>Illumina_Single_End_Adapter_2_|_>Illumina_Single_End_PCR_Primer_2 +CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT +>ABI_Solid3_Adapter_B +CCACTACGCCTCCGCTTTCCTCTCTATGGGCAGTCGGTGAT +>Illumina_NlaIII_expression_Sequencing_Primer_|_>Illumina_NlaIII_Gex_Sequencing_Primer +CCGACAGGTTCAGAGTTCTACAGTCCGACATG +>I7_Primer_Nextera_XT_and_Nextera_Enrichment_N711_|_>I7_Primer_Nextera_XT_Index_Kit_v2_N711_|_>I7_Primer_Nextera_XT_and_Nextera_Enrichment_N711_|_>I7_Primer_Nextera_XT_Index_Kit_v2_N711 +CCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_Index_Kit_v2_N716 +CCGAGCCCACGAGACACTCGCTAATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_Index_Kit_v2_N724 +CCGAGCCCACGAGACACTGAGCGATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_and_Nextera_Enrichment_N703_|_>I7_Primer_Nextera_XT_Index_Kit_v2_N703_|_>I7_Primer_Nextera_XT_and_Nextera_Enrichment_N703_|_>I7_Primer_Nextera_XT_Index_Kit_v2_N703 +CCGAGCCCACGAGACAGGCAGAAATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_Index_Kit_v2_N715 +CCGAGCCCACGAGACATCTCAGGATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_Index_Kit_v2_N722 +CCGAGCCCACGAGACATGCGCAGATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_and_Nextera_Enrichment_N708 +CCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_Index_Kit_v2_N726 +CCGAGCCCACGAGACCCTAAGACATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_and_Nextera_Enrichment_N710_|_>I7_Primer_Nextera_XT_Index_Kit_v2_N710_|_>I7_Primer_Nextera_XT_and_Nextera_Enrichment_N710_|_>I7_Primer_Nextera_XT_Index_Kit_v2_N710 +CCGAGCCCACGAGACCGAGGCTGATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_Index_Kit_v2_N727 +CCGAGCCCACGAGACCGATCAGTATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_Index_Kit_v2_N720 +CCGAGCCCACGAGACCGGAGCCTATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_and_Nextera_Enrichment_N702_|_>I7_Primer_Nextera_XT_Index_Kit_v2_N702_|_>I7_Primer_Nextera_XT_and_Nextera_Enrichment_N702_|_>I7_Primer_Nextera_XT_Index_Kit_v2_N702 +CCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_and_Nextera_Enrichment_N707_|_>I7_Primer_Nextera_XT_Index_Kit_v2_N707_|_>I7_Primer_Nextera_XT_and_Nextera_Enrichment_N707_|_>I7_Primer_Nextera_XT_Index_Kit_v2_N707 +CCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_Index_Kit_v2_N719 +CCGAGCCCACGAGACGCGTAGTAATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_and_Nextera_Enrichment_N709 +CCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_Index_Kit_v2_N714 +CCGAGCCCACGAGACGCTCATGAATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_and_Nextera_Enrichment_N705_|_>I7_Primer_Nextera_XT_Index_Kit_v2_N705_|_>I7_Primer_Nextera_XT_and_Nextera_Enrichment_N705_|_>I7_Primer_Nextera_XT_Index_Kit_v2_N705 +CCGAGCCCACGAGACGGACTCCTATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_Index_Kit_v2_N718 +CCGAGCCCACGAGACGGAGCTACATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_and_Nextera_Enrichment_N712_|_>I7_Primer_Nextera_XT_Index_Kit_v2_N712_|_>I7_Primer_Nextera_XT_and_Nextera_Enrichment_N712_|_>I7_Primer_Nextera_XT_Index_Kit_v2_N712 +CCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_and_Nextera_Enrichment_N701_|_>I7_Primer_Nextera_XT_Index_Kit_v2_N701_|_>I7_Primer_Nextera_XT_and_Nextera_Enrichment_N701_|_>I7_Primer_Nextera_XT_Index_Kit_v2_N701 +CCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_Index_Kit_v2_N721 +CCGAGCCCACGAGACTACGCTGCATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_Index_Kit_v2_N723 +CCGAGCCCACGAGACTAGCGCTCATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_and_Nextera_Enrichment_N706_|_>I7_Primer_Nextera_XT_Index_Kit_v2_N706_|_>I7_Primer_Nextera_XT_and_Nextera_Enrichment_N706_|_>I7_Primer_Nextera_XT_Index_Kit_v2_N706 +CCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_and_Nextera_Enrichment_N704_|_>I7_Primer_Nextera_XT_Index_Kit_v2_N704_|_>I7_Primer_Nextera_XT_and_Nextera_Enrichment_N704_|_>I7_Primer_Nextera_XT_Index_Kit_v2_N704 +CCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_Index_Kit_v2_N729 +CCGAGCCCACGAGACTCGACGTCATCTCGTATGCCGTCTTCTGCTTG +>I7_Primer_Nextera_XT_Index_Kit_v2_N728 +CCGAGCCCACGAGACTGCAGCTAATCTCGTATGCCGTCTTCTGCTTG +>Illumina_DpnII_expression_Sequencing_Primer_|_>Illumina_Small_RNA_Sequencing_Primer_|_>Illumina_DpnII_Gex_Sequencing_Primer +CGACAGGTTCAGAGTTCTACAGTCCGACGATC +>Illumina_Paired_End_Sequencing_Primer_2 +CGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT +>Clontech_Universal_Primer_Mix_Long +CTAATACGACTCACTATAGGGCAAGCAGTGGTATCAACGCAGAGT +>I7_Adapter_Nextera_No_Barcode +CTGAGCGGGCTGGCAAGGCAGACCGATCTCGTATGCCGTCTTCTGCTTG +>I5_Adapter_Nextera +CTGATGGCGCGAGGGAGGCGTGTAGATCTCGGTGGTCGCCGTATCATT +>ABI_Solid3_Adapter_A +CTGCCCCGGGTTCCTCATTCTCTCAGCAGCATG +>I7_Nextera_Transposase_1_|_>Trans2_rc_|_>I7_Nextera_Transposase_1_|_>Trans2_rc +CTGTCTCTTATACACATCTCCGAGCCCACGAGAC +>I7_Nextera_Transposase_2 +CTGTCTCTTATACACATCTCTGAGCGGGCTGGCAAGGC +>I5_Nextera_Transposase_2 +CTGTCTCTTATACACATCTCTGATGGCGCGAGGGAGGC +>I5_Nextera_Transposase_1_|_>Trans1_rc_|_>I5_Nextera_Transposase_1_|_>Trans1_rc +CTGTCTCTTATACACATCTGACGCTGCCGACGA +>I5_Primer_Nextera_XT_Index_Kit_v2_S516 +GACGCTGCCGACGAACTCTAGGGTGTAGATCTCGGTGGTCGCCGTATCATT +>I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]503_|_>I5_Primer_Nextera_XT_Index_Kit_v2_S503_|_>I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]503_|_>I5_Primer_Nextera_XT_Index_Kit_v2_S503 +GACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTGGTCGCCGTATCATT +>I5_Primer_Nextera_XT_Index_Kit_v2_S515 +GACGCTGCCGACGAAGCTAGAAGTGTAGATCTCGGTGGTCGCCGTATCATT +>I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]508_|_>I5_Primer_Nextera_XT_Index_Kit_v2_S508_|_>I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]508_|_>I5_Primer_Nextera_XT_Index_Kit_v2_S508 +GACGCTGCCGACGAAGGCTTAGGTGTAGATCTCGGTGGTCGCCGTATCATT +>I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]502_|_>I5_Primer_Nextera_XT_Index_Kit_v2_S502_|_>I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]502_|_>I5_Primer_Nextera_XT_Index_Kit_v2_S502 +GACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGTGGTCGCCGTATCATT +>I5_Primer_Nextera_XT_Index_Kit_v2_S520 +GACGCTGCCGACGAATAGCCTTGTGTAGATCTCGGTGGTCGCCGTATCATT +>I5_Primer_Nextera_XT_Index_Kit_v2_S510 +GACGCTGCCGACGAATTAGACGGTGTAGATCTCGGTGGTCGCCGTATCATT +>I5_Primer_Nextera_XT_Index_Kit_v2_S511 +GACGCTGCCGACGACGGAGAGAGTGTAGATCTCGGTGGTCGCCGTATCATT +>I5_Primer_Nextera_XT_Index_Kit_v2_S513 +GACGCTGCCGACGACTAGTCGAGTGTAGATCTCGGTGGTCGCCGTATCATT +>I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]505_|_>I5_Primer_Nextera_XT_Index_Kit_v2_S505_|_>I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]505_|_>I5_Primer_Nextera_XT_Index_Kit_v2_S505 +GACGCTGCCGACGACTCCTTACGTGTAGATCTCGGTGGTCGCCGTATCATT +>I5_Primer_Nextera_XT_Index_Kit_v2_S518 +GACGCTGCCGACGACTTAATAGGTGTAGATCTCGGTGGTCGCCGTATCATT +>I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]501 +GACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTGGTCGCCGTATCATT +>I5_Primer_Nextera_XT_Index_Kit_v2_S521 +GACGCTGCCGACGATAAGGCTCGTGTAGATCTCGGTGGTCGCCGTATCATT +>I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]507_|_>I5_Primer_Nextera_XT_Index_Kit_v2_S507_|_>I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]507_|_>I5_Primer_Nextera_XT_Index_Kit_v2_S507 +GACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTGGTCGCCGTATCATT +>I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]506_|_>I5_Primer_Nextera_XT_Index_Kit_v2_S506_|_>I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]506_|_>I5_Primer_Nextera_XT_Index_Kit_v2_S506 +GACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTGGTCGCCGTATCATT +>I5_Primer_Nextera_XT_Index_Kit_v2_S522 +GACGCTGCCGACGATCGCATAAGTGTAGATCTCGGTGGTCGCCGTATCATT +>I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]504 +GACGCTGCCGACGATCTACTCTGTGTAGATCTCGGTGGTCGCCGTATCATT +>I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]517_|_>I5_Primer_Nextera_XT_Index_Kit_v2_S517_|_>I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]517_|_>I5_Primer_Nextera_XT_Index_Kit_v2_S517 +GACGCTGCCGACGATCTTACGCGTGTAGATCTCGGTGGTCGCCGTATCATT +>Nextera_LMP_Read1_External_Adapter_|_>Illumina_Multiplexing_Index_Sequencing_Primer +GATCGGAAGAGCACACGTCTGAACTCCAGTCAC +>TruSeq_Adapter_Index_5_|_>TruSeq_Adapter,_Index_5 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_25 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTGATATATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter,_Index_25 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTGATATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_8_|_>TruSeq_Adapter,_Index_8 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_13 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAACAATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter,_Index_13 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAACTCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_14 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCGTATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter,_Index_14 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCGTCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_1_6_|_>TruSeq_Adapter,_Index_1 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_15 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGAATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter,_Index_15 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGTCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_27 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCCTTTATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter,_Index_27 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCCTTTCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_7_|_>TruSeq_Adapter,_Index_7 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter,_Index_23 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCACTCTTCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_16 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter,_Index_16 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCTCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_2_|_>TruSeq_Adapter,_Index_2 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_22 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTACGTAATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter,_Index_22 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTACGTTCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_12_|_>TruSeq_Adapter,_Index_12 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_23 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGTGGATATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_9_|_>TruSeq_Adapter,_Index_9 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_6_|_>TruSeq_Adapter,_Index_6 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_11_|_>TruSeq_Adapter,_Index_11 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_18_7 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter,_Index_18 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_19 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter,_Index_19 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACTCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_20 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCTTATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter,_Index_20 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCTTCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_21 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTTCGGAATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter,_Index_21 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTTCGGTCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_10_|_>TruSeq_Adapter,_Index_10 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_4_|_>TruSeq_Adapter,_Index_4 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGCCGTCTTCTGCTTG +>TruSeq_Adapter_Index_3_|_>TruSeq_Adapter,_Index_3 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGCCGTCTTCTGCTTG +>Illumina_Paired_End_Adapter_2 +GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG +>Nextera_LMP_Read2_External_Adapter +GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT +>Illumina_Single_End_Adapter_1 +GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG +>Trans2 +GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAG +>PrefixPE/2_|_>PE2_|_>Illumina_Multiplexing_PCR_Primer_2.01_|_>Illumina_Multiplexing_Read2_Sequencing_Primer_|_>PrefixPE/2_|_>PE2 +GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT +>PrefixPE/1_|_>PE1_|_>PrefixPE/1_|_>PE1 +TACACTCTTTCCCTACACGACGCTCTTCCGATCT +>RNA_PCR_Primer_(RP1)_part_#_15013198 +TCGGACTGTAGAACTCTGAACGTGTAGATCTCGGTGGTCGCCGTATCATT +>Trans1 +TCGTCGGCAGCGTCAGATGTGTATAAGAGACAG +>RNA_PCR_Primer_Index_5_(RPI5) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACACAGTGATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_25_(RPI25) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACACTGATATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_8_(RPI8) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACACTTGAATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_13_(RPI13) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACAGTCAAATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_14_(RPI14) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACAGTTCCATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_1_(RPI1)_2,9 +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATCACGATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_26_(RPI26) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATGAGCATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_15_(RPI15) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATGTCAATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_27_(RPI27) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCCTATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_28_(RPI28) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCAAAAGATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_29_(RPI29) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCAACTAATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_30_(RPI30) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCACCGGATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_31_(RPI31) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCACGATATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_32_(RPI32) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCACTCAATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_7_(RPI7) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCAGATCATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_33_(RPI33) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCAGGCGATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_34_(RPI34) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCATGGCATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_35_(RPI35) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCATTTTATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_36_(RPI36) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCCAACAATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_16_(RPI16) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCCGTCCATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_2_(RPI2) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCGATGTATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_37_(RPI37) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCGGAATATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_22_(RPI22) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCGTACGATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_38_(RPI38) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTAGCTATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_39_(RPI39) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTATACATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_40_(RPI40) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTCAGAATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_12_(RPI12) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_41_(RPI41) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGACGACATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_23_(RPI23) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGAGTGGATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_9_(RPI9) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGATCAGATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_6_(RPI6) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGCCAATATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_11_(RPI11) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGGCTACATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_24_(RPI24) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGGTAGCATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_17_(RPI17) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_18_(RPI18) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTCCGCATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_19_(RPI19) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTGAAAATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_20_(RPI20) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTGGCCATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_21_(RPI21) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTTTCGATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_42_(RPI42) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTAATCGATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_43_(RPI43) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTACAGCATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_10_(RPI10) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTAGCTTATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_44_(RPI44) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTATAATATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_45_(RPI45) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTCATTCATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_46_(RPI46) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTCCCGAATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_47_(RPI47) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTCGAAGATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_48_(RPI48) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTCGGCAATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_4_(RPI4) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTGACCAATCTCGTATGCCGTCTTCTGCTTG +>RNA_PCR_Primer_Index_3_(RPI3) +TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTTAGGCATCTCGTATGCCGTCTTCTGCTTG +>FlowCell1 +TTTTTTTTTTAATGATACGGCGACCACCGAGATCTACAC +>FlowCell2 +TTTTTTTTTTCAAGCAGAAGACGGCATACGA +>MGI/BGI_adapter_(forward) +AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA +>MGI/BGI_adapter_(reverse) +AAGTCGGATCGTAGCCATGTCGTTCTGTGAGCCAAGGAGTTG +>QIASeq_miRNA_adapter +AACTGTAGGCACCATCAAT diff --git a/src/sequence_processing_pipeline/scripts/__init__.py b/src/sequence_processing_pipeline/scripts/__init__.py new file mode 100644 index 00000000..e69de29b diff --git a/src/sequence_processing_pipeline/scripts/cli.py b/src/sequence_processing_pipeline/scripts/cli.py new file mode 100644 index 00000000..10232926 --- /dev/null +++ b/src/sequence_processing_pipeline/scripts/cli.py @@ -0,0 +1,21 @@ +import click +from sequence_processing_pipeline.Commands import demux_cmd + + +@click.group() +def cli(): + pass + + +@cli.command() +@click.option('--id-map', type=click.Path(exists=True), required=True) +@click.option('--infile', type=click.Path(exists=True), required=True) +@click.option('--output', type=click.Path(exists=True), required=True) +@click.option('--task', type=int, required=True) +@click.option('--maxtask', type=int, required=True) +def demux(id_map, infile, output, task, maxtask): + demux_cmd(id_map, infile, output, task, maxtask) + + +if __name__ == '__main__': + cli() diff --git a/src/sequence_processing_pipeline/scripts/splitter b/src/sequence_processing_pipeline/scripts/splitter new file mode 100755 index 00000000..50151281 Binary files /dev/null and b/src/sequence_processing_pipeline/scripts/splitter differ diff --git a/src/sequence_processing_pipeline/templates/fastqc_job.sh b/src/sequence_processing_pipeline/templates/fastqc_job.sh new file mode 100644 index 00000000..2adc5bd7 --- /dev/null +++ b/src/sequence_processing_pipeline/templates/fastqc_job.sh @@ -0,0 +1,22 @@ +#!/bin/bash +#SBATCH -J {{job_name}} +#SBATCH -p {{queue_name}} +#SBATCH -N {{node_count}} +#SBATCH -n {{nprocs}} +#SBATCH --time {{wall_time_limit}} +#SBATCH --mem {{mem_in_gb}}G +#SBATCH --array {{array_params}} +set -x +set +e +set -o pipefail +date +hostname +echo ${SLURM_JOBID} ${SLURM_ARRAY_TASK_ID} +cd {{output_path}} +{% if modules_to_load is defined %} +module load {{modules_to_load}} +{% endif %} +step=${SLURM_ARRAY_TASK_ID} +cmd0=$(head -n $step {{array_details}} | tail -n 1) +eval $cmd0 +echo "Cmd Completed: $cmd0" > logs/FastQCJob_$step.completed diff --git a/src/sequence_processing_pipeline/templates/integrate.sbatch b/src/sequence_processing_pipeline/templates/integrate.sbatch new file mode 100644 index 00000000..0e19a08d --- /dev/null +++ b/src/sequence_processing_pipeline/templates/integrate.sbatch @@ -0,0 +1,68 @@ +#!/bin/bash -l +#SBATCH -J {{job_name}} +#SBATCH --time {{wall_time_limit}} +#SBATCH --mem {{mem_in_gb}}G +#SBATCH -N {{node_count}} +#SBATCH -c {{cores_per_task}} +#SBATCH -p {{queue_name}} +#SBATCH --array=1-{{barcode_id_count}} + +#SBATCH --output {{output_dir}}/logs/integrate_%x_%A_%a.out +#SBATCH --error {{output_dir}}/logs/integrate_%x_%A_%a.err + +set -x +set -e + +samples=($(cat {{output_dir}}/sample_index_list.txt | cut -f 2)) +sample=${samples[$((${SLURM_ARRAY_TASK_ID} - 1))]} + +export TMPDIR={{tmp_dir}} + +# get list of samples and determine which sample this array instance will work +# on. +samples=($(cat {{output_dir}}/sample_index_list.txt | cut -f 2)) +sample=${samples[$((${SLURM_ARRAY_TASK_ID} - 1))]} + +echo "Processing sample ${sample}..." + +# make temp directory +export TMPDIR={{tmp_dir}} +mkdir -p $TMPDIR + + +# TODO: All three input files must be non-zero in length. +# If possible, do this check as part of normal FSR operation. +# Previously this was done right here BEFORE integrating, rather +# than after. + +# NB: non-zero file-length check removed for now. This should be performed +# by FSR after processing is done. +# TODO: Make sure raw_fastq_dir is TellReadJob/Full +r1_in={{raw_fastq_dir}}/TellReadJob_R1_${sample}.fastq.gz.corrected.err_barcode_removed.fastq +r2_in={{raw_fastq_dir}}/TellReadJob_R2_${sample}.fastq.gz.corrected.err_barcode_removed.fastq +i1_in={{raw_fastq_dir}}/TellReadJob_I1_${sample}.fastq.gz.corrected.err_barcode_removed.fastq + +# create output directory +mkdir -p {{output_dir}}/integrated + +# generate output file names +r1_out={{output_dir}}/integrated/${sample}.R1.fastq.gz +r2_out={{output_dir}}/integrated/${sample}.R2.fastq.gz +i1_out={{output_dir}}/integrated/${sample}.I1.fastq.gz + +# generate 'integrated' I1 fastq.gz file. We do this as part of each array so +# they're done in parallel. +gzip -c ${i1_in} > ${i1_out} + +# generate integrated R1 and R2 fastq.gz files. +conda activate qp-knight-lab-processing-2022.03 + +python {{integrate_script_path}} integrate \ +--no-sort \ +--r1-in ${r1_in} \ +--r2-in ${r2_in} \ +--i1-in ${i1_in} \ +--r1-out ${r1_out} \ +--r2-out ${r2_out} \ +--threads {{cores_per_task}} + diff --git a/src/sequence_processing_pipeline/templates/multiqc_job.sh b/src/sequence_processing_pipeline/templates/multiqc_job.sh new file mode 100644 index 00000000..fb4a516a --- /dev/null +++ b/src/sequence_processing_pipeline/templates/multiqc_job.sh @@ -0,0 +1,22 @@ +#!/bin/bash +#SBATCH -J {{job_name}} +#SBATCH -p {{queue_name}} +#SBATCH -N {{node_count}} +#SBATCH -n {{nprocs}} +#SBATCH --time {{wall_time_limit}} +#SBATCH --mem {{mem_in_gb}}G +#SBATCH --array {{array_params}} +set -x +set +e +set -o pipefail +date +hostname +echo ${SLURM_JOBID} ${SLURM_ARRAY_TASK_ID} +cd {{output_path}} +{% if modules_to_load is defined %} + module load {{modules_to_load}} +{% endif %} +step=${SLURM_ARRAY_TASK_ID} +cmd0=$(head -n $step {{array_details}} | tail -n 1) +eval $cmd0 +echo "Cmd Completed: $cmd0" > logs/MultiQCJob_$step.completed diff --git a/src/sequence_processing_pipeline/templates/nuqc_job.sh b/src/sequence_processing_pipeline/templates/nuqc_job.sh new file mode 100644 index 00000000..7ada81f4 --- /dev/null +++ b/src/sequence_processing_pipeline/templates/nuqc_job.sh @@ -0,0 +1,179 @@ +#!/bin/bash -l +#SBATCH -J {{job_name}} +#SBATCH -p {{queue_name}} +### wall-time-limit in minutes +#SBATCH --time {{wall_time_limit}} +#SBATCH --mem {{mem_in_gb}}G +#SBATCH -N {{node_count}} +### Note cores_per_task maps to fastp & minimap2 thread counts +### as well as sbatch -c. demux threads remains fixed at 1. +### Note -c set to 4 and thread counts set to 7 during testing. +#SBATCH -c {{cores_per_task}} +### Commented out for now, but there is a possibility it will be needed +### in the future. +###SBATCH --gres=node_jobs:{{gres_value}} +#SBATCH --constraint="amd" + + +echo "---------------" +echo "Run details:" +echo "$SLURM_JOB_NAME $SLURM_JOB_ID $SLURMD_NODENAME $SLURM_ARRAY_TASK_ID" +echo "---------------" + +if [[ -z "${SLURM_ARRAY_TASK_ID}" ]]; then + echo "Not operating within an array" + exit 1 +fi +if [[ -z ${PREFIX} ]]; then + echo "PREFIX is not set" + exit 1 +fi +if [[ -z ${OUTPUT} ]]; then + echo "OUTPUT is not set" + exit 1 +fi + +conda activate qp-knight-lab-processing-2022.03 +module load {{modules_to_load}} + +set -x +set -e +set -o pipefail + +export FILES=$(printf "%s-%d" ${PREFIX} ${SLURM_ARRAY_TASK_ID}) +if [[ ! -f ${FILES} ]]; then + logger ${FILES} not found + exit 1 +fi +# set a temp directory, make a new unique one under it and +# make sure we clean up as we're dumping to shm +# DO NOT do this casually. Only do a clean up like this if +# you know for sure TMPDIR is what you want. + +WKDIR=${OUTPUT}/ +TMPDIR=${OUTPUT} +export TMPDIR=${TMPDIR} +export TMPDIR=$(mktemp -d) +echo $TMPDIR + +mkdir -p ${WKDIR}/fastp_reports_dir/html +mkdir -p ${WKDIR}/fastp_reports_dir/json + +export ADAPTER_ONLY_OUTPUT=${OUTPUT}/only-adapter-filtered +mkdir -p ${ADAPTER_ONLY_OUTPUT} + +function cleanup { + echo "Removing $TMPDIR" + rm -fr $TMPDIR + unset TMPDIR +} +trap cleanup EXIT + +export delimiter=::MUX:: +export r1_tag=/1 +export r2_tag=/2 +function mux-runner () { + n=$(wc -l ${FILES} | cut -f 1 -d" ") + + jobd=${TMPDIR} + id_map=${jobd}/id_map + seqs_reads=${jobd}/seqs.interleaved.fastq + seq_reads_filter_alignment=${jobd}/seqs.interleaved.filter_alignment.fastq + + for i in $(seq 1 ${n}) + do + line=$(head -n ${i} ${FILES} | tail -n 1) + r1=$(echo ${line} | cut -f 1 -d" ") + r2=$(echo ${line} | cut -f 2 -d" ") + base=$(echo ${line} | cut -f 3 -d" ") + r1_name=$(basename ${r1} .fastq.gz) + r2_name=$(basename ${r2} .fastq.gz) + r_adapter_only=${ADAPTER_ONLY_OUTPUT}/${r1_name}.interleave.fastq.gz + + s_name=$(basename "${r1}" | sed -r 's/\.fastq\.gz//') + html_name=$(echo "$s_name.html") + json_name=$(echo "$s_name.json") + + echo -e "${i}\t${r1_name}\t${r2_name}\t${base}" >> ${id_map} + + # movi, in the current version, works on the interleaved version of the + # fwd/rev reads so we are gonna take advantage fastp default output + # to minimize steps. Additionally, movi expects the input to not be + # gz, so we are not going to compress seqs_r1 + + fastp \ + -l {{length_limit}} \ + -i ${r1} \ + -I ${r2} \ + -w {{cores_per_task}} \ + --adapter_fasta {{knwn_adpt_path}} \ + --html {{html_path}}/${html_name} \ + --json {{json_path}}/${json_name} \ + --stdout | gzip > ${r_adapter_only} + + # multiplex and write adapter filtered data all at once + zcat ${r_adapter_only} | \ + sed -r "1~4s/^@(.*)/@${i}${delimiter}\1/" \ + >> ${seqs_reads} + done + + # minimap/samtools pair commands are now generated in NuQCJob._generate_mmi_filter_cmds() + # and passed to this template. + {{mmi_filter_cmds}} + + {{movi_path}} query \ + --index /scratch/movi_hg38_chm13_hprc94 \ + --read ${seq_reads_filter_alignment} \ + --stdout | gzip > ${jobd}/seqs.movi.txt.gz + + python {{pmls_path}} <(zcat ${jobd}/seqs.movi.txt.gz) | \ + seqtk subseq ${seq_reads_filter_alignment} - > ${jobd}/seqs.final.fastq + + {{splitter_binary}} ${jobd}/seqs.final.fastq \ + ${jobd}/reads.r1.fastq ${delimiter} ${r1_tag} & + {{splitter_binary}} ${jobd}/seqs.final.fastq \ + ${jobd}/reads.r2.fastq ${delimiter} ${r2_tag} & + wait + fastq_pair -t 50000000 ${jobd}/reads.r1.fastq ${jobd}/reads.r2.fastq + + # keep seqs.movi.txt and migrate it to NuQCJob directory. + mv ${jobd}/seqs.movi.txt.gz {{output_path}}/logs/seqs.movi.${SLURM_ARRAY_TASK_ID}.txt.gz +} +export -f mux-runner + + +function demux-runner () { + n_demux_jobs=${SLURM_CPUS_PER_TASK} + jobd=${TMPDIR} + id_map=${jobd}/id_map + seqs_r1=${jobd}/reads.r1.fastq.paired.fq + seqs_r2=${jobd}/reads.r2.fastq.paired.fq + + id_map=${jobd}/id_map + if [[ ! -f ${id_map} ]]; then + echo "No samples..." + return + fi + + for idx in $(seq 0 ${n_demux_jobs}) + do + python {{demux_path}} \ + --id-map ${id_map} \ + --infile <(cat ${seqs_r1} ${seqs_r2}) \ + --output ${OUTPUT} \ + --task ${idx} \ + --maxtask ${n_demux_jobs} & + done + wait +} +export -f demux-runner + +mux-runner + +mkdir -p ${OUTPUT} + +echo "$(date) :: demux start" +demux-runner +echo "$(date) :: demux stop" + +touch ${OUTPUT}/${SLURM_JOB_NAME}.${SLURM_ARRAY_TASK_ID}.completed diff --git a/src/sequence_processing_pipeline/templates/seq_counts.sbatch b/src/sequence_processing_pipeline/templates/seq_counts.sbatch new file mode 100644 index 00000000..a472921b --- /dev/null +++ b/src/sequence_processing_pipeline/templates/seq_counts.sbatch @@ -0,0 +1,26 @@ +#!/bin/bash -l +#SBATCH -J {{job_name}} +#SBATCH --time {{wall_time_limit}} +#SBATCH --mem {{mem_in_gb}}G +#SBATCH -N {{node_count}} +#SBATCH -c {{cores_per_task}} +#SBATCH -p {{queue_name}} +#SBATCH --array=1-{{file_count}} + +#SBATCH --output {{output_path}}/logs/%x_%A_%a.out +#SBATCH --error {{output_path}}/logs/%x_%A_%a.err + +set -x +set -e +set -o pipefail + +mkdir -p {{output_path}}/logs + +files=($(cat {{files_to_count_path}})) +my_file=${files[$((${SLURM_ARRAY_TASK_ID} - 1))]} + +echo "${my_file}" + +conda activate qp-knight-lab-processing-2022.03 + +seqtk size ${my_file} diff --git a/src/sequence_processing_pipeline/templates/tellread-cleanup.sbatch b/src/sequence_processing_pipeline/templates/tellread-cleanup.sbatch new file mode 100644 index 00000000..3c31219d --- /dev/null +++ b/src/sequence_processing_pipeline/templates/tellread-cleanup.sbatch @@ -0,0 +1,13 @@ +#!/bin/bash -l +#SBATCH -J {{job_name}} # cleanup +#SBATCH --time {{wall_time_limit}} # 24:00:00 +#SBATCH --mem {{mem_in_gb}}G # 8G +#SBATCH -N {{node_count}} # 1 +#SBATCH -c {{cores_per_task}} # 1 +#SBATCH -p {{queue_name}} # qiita + +#SBATCH --output {{output}}/logs/cleanup_%x-%A.out +#SBATCH --error {{output}}/logs/cleanup_%x-%A.err + +# remove unused large outputs +rm -rf {{OUTPUT}}/biosample_format {{OUTPUT}}/1_demult {{OUTPUT}}/Full diff --git a/src/sequence_processing_pipeline/templates/tellread.sbatch b/src/sequence_processing_pipeline/templates/tellread.sbatch new file mode 100644 index 00000000..f038a568 --- /dev/null +++ b/src/sequence_processing_pipeline/templates/tellread.sbatch @@ -0,0 +1,48 @@ +#!/bin/bash -l +#SBATCH -J {{job_name}} +#SBATCH -p {{queue_name}} +#SBATCH -N {{node_count}} +#SBATCH -c {{cores_per_task}} +#SBATCH --mem {{mem_in_gb}}G +#SBATCH --time {{wall_time_limit}} + +#SBATCH --output {{output}}/logs/tellread_%x-%A.out +#SBATCH --error {{output}}/logs/tellread_%x-%A.err + +set -x + +module load {{modules_to_load}} +{{sing_script_path}} \ + -i {{rundir_path}} \ + -o {{output}} \ + -s $(echo {{samples}} | tr -d '"') \ + -g $(echo {{refs}} | tr -d '"') \ + -j ${SLURM_JOB_CPUS_PER_NODE} {{extra}} \ + -l {{lane}} + +# get the timestamp for the most recently changed file in directory '.' + +# hard-limit for wait time set to ~ 8 hours. +# (4 checks per hour, for 8 hours equals 32 iterations) +for i in $(seq 1 32); +do + before="$(find {{output}}/Full -type f -printf '%T@\n' | sort -n | tail -1)" + # assume TellReadJob is finished if ctime hasn't changed in 15 minutes + # for any fastq file in the directory. + sleep 900 + after="$(find {{output}}/Full -type f -printf '%T@\n' | sort -n | tail -1)" + + echo "$before $after" + + if [[ "$before" == "$after" ]]; then + echo "DONE" + exit 0 + else + echo "NOT DONE" + fi +done + +# if we've reached this point then we've exceeded our hard-limit for waiting. +# return w/an error. +exit 1 + diff --git a/src/sequence_processing_pipeline/util.py b/src/sequence_processing_pipeline/util.py new file mode 100644 index 00000000..9bec0ebf --- /dev/null +++ b/src/sequence_processing_pipeline/util.py @@ -0,0 +1,84 @@ +import re + + +PAIR_UNDERSCORE = (re.compile(r'_R1_'), '_R1_', '_R2_') +PAIR_DOT = (re.compile(r'\.R1\.'), '.R1.', '.R2.') +PAIR_TESTS = (PAIR_UNDERSCORE, PAIR_DOT) + + +def determine_orientation(file_name): + # aka forward, reverse, and indexed reads + orientations = ['R1', 'R2', 'I1', 'I2'] + + results = [] + + # assume orientation is always present in the file's name. + # assume that it is of one of the four forms above. + # assume that it is always the right-most occurance of the four + # orientations above. + # assume that orientation is encapsulated with either '_' or '.' + # e.g.: '_R1_', '.I2.'. + # assume users can and will include any or all of the four + # orientation as part of their filenames as well. e.g.: + # ABC_7_04_1776_R1_SRE_S3_L007_R2_001.trimmed.fastq.gz + for o in orientations: + variations = [f"_{o}_", f".{o}."] + for v in variations: + # rfind searches from the end of the string, rather than + # its beginning. It returns the position in the string + # where the substring begins. + results.append((file_name.rfind(v), o)) + + # the orientation will be the substring found with the maximum + # found value for pos. That is, it will be the substring that + # begins at the rightest most position in the file name. + results.sort(reverse=True) + + pos, orientation = results[0] + + # if no orientations were found, then return None. + return None if pos == -1 else orientation + + +def iter_paired_files(files): + """Yield matched r1/r2 paired files""" + files = sorted(files) + + if len(files) % 2 != 0: + raise ValueError("Files are not paired") + + files = iter(files) + r1 = iter(files) + r2 = iter(files) + + for r1_fp, r2_fp in zip(r1, r2): + matched = False + for pattern, r1_exp, r2_exp in PAIR_TESTS: + if pattern.search(r1_fp): + if r2_exp not in r2_fp: + raise ValueError(f"Cannot find '{r2_exp}' in '{r2_fp}'") + + # replace find w/find so that search for R1 and R2 begin + # from the end of the string, not the beginning. This prevents + # the code from breaking when filenames include R1 and R2 as + # part of their name in addition to representing forward and + # reversed reads e.g.: + # LS_8_22_2014_R1_SRE_S3_L007_R1_001.trimmed.fastq.gz + # LS_8_22_2014_R1_SRE_S3_L007_R2_001.trimmed.fastq.gz + # using find(), r1_prefix and r2_prefix will be the following: + # r1_prefix will be: LS_8_22_2014 + # r2_prefix will be: LS_8_22_2014_R1_SRE_S3_L007 + r1_prefix = r1_fp[:r1_fp.rfind(r1_exp)] + r2_prefix = r2_fp[:r2_fp.rfind(r2_exp)] + + if r1_prefix != r2_prefix: + raise ValueError(f"Mismatch prefixes:\n{r1_prefix}\n" + f"{r2_prefix}") + + matched = True + break + + if not matched: + raise ValueError(f"Unable to match:\n{r1_fp}\n{r2_fp}") + + yield (r1_fp, r2_fp) diff --git a/tests/__init__.py b/tests/__init__.py new file mode 100644 index 00000000..e69de29b diff --git a/tests/bin/bcl-convert b/tests/bin/bcl-convert new file mode 100755 index 00000000..02ccda7f --- /dev/null +++ b/tests/bin/bcl-convert @@ -0,0 +1,2 @@ +#!/usr/bin/env bash +echo "Hello. I am a fake bcl-convert binary." diff --git a/tests/bin/bcl2fastq b/tests/bin/bcl2fastq new file mode 100755 index 00000000..0bc5fe96 --- /dev/null +++ b/tests/bin/bcl2fastq @@ -0,0 +1,2 @@ +#!/usr/bin/env bash +echo "Hello. I am a fake bcl2fastq binary." \ No newline at end of file diff --git a/tests/bin/fake_squeue.py b/tests/bin/fake_squeue.py new file mode 100755 index 00000000..2f3a3d5c --- /dev/null +++ b/tests/bin/fake_squeue.py @@ -0,0 +1,101 @@ +#!/usr/bin/env python +from json import load, dumps +from os.path import exists, join +from sys import argv +from random import randint, choice + + +def print_state(state): + # Note that %i will appear w/column name 'JOBID' in actual squeue output. + # this is because %i shows the array-id if it's an array job and what we + # consider the regular job-id if it's not an array job. + print("JOBID,STATE") + for job_id in state: + if 'array_ids' in state[job_id]: + # this is an array job + for array_id in state[job_id]['array_ids']: + if state[job_id]['array_ids'][array_id] <= 0: + end_state = state[job_id]['endgame'][array_id] + else: + end_state = 'RUNNING' + + print(f"{array_id},{end_state}") + else: + # this is a non-array job + if state[job_id]['countdown'] <= 0: + end_state = state[job_id]['endgame'] + else: + end_state = 'RUNNING' + + print(f"{job_id},{end_state}") + + +def generate_output(job_ids): + results = {} + + for job_id in job_ids: + is_successful = choice([True, False]) + is_array_job = choice([True, False]) + + if is_array_job: + result = {'job_id': job_id} + result['array_ids'] = {} + result['endgame'] = {} + + for i in range(0, randint(5, 15)): + array_id = "%s_%d" % (job_id, i) + result['array_ids'][array_id] = randint(3, 7) + result['array_ids'][array_id] = randint(3, 7) + if is_successful: + # all array jobs must be successful + result['endgame'][array_id] = "COMPLETED" + else: + # some jobs may succeed but some may fail + result['endgame'][array_id] = choice( + ['COMPLETED', 'FAILED']) + results[job_id] = result + else: + result = {'job_id': job_id} + result['countdown'] = randint(3, 7) + result['endgame'] = choice(['COMPLETED', 'FAILED']) + results[job_id] = result + + return results + + +def save_state(state, file_path): + with open(file_path, 'w') as f: + print(dumps(state, indent=2), file=f) + + +def load_state(file_path): + with open(file_path, 'r') as f: + return load(f) + + +if __name__ == "__main__": + # "squeue -t all -j " f"{','.join(job_ids)} " "-o '%i,%T'" + job_ids = argv[4].split(',') + + state_file_path = join("tests", "bin", + "my_state.json") + + state = generate_output(job_ids) + + if exists(state_file_path): + state = load_state(state_file_path) + else: + state = generate_output(job_ids) + + print_state(state) + + for job_id in state: + if 'array_ids' in state[job_id]: + # this is an array job. + for array_id in state[job_id]['array_ids']: + state[job_id]['array_ids'][array_id] -= 1 + else: + # this is a standard job. + state[job_id]['countdown'] -= 1 + + save_state(state, state_file_path) diff --git a/tests/bin/fastqc b/tests/bin/fastqc new file mode 100755 index 00000000..97ad2ae0 --- /dev/null +++ b/tests/bin/fastqc @@ -0,0 +1,2 @@ +#!/usr/bin/env bash +echo "Hello. I am a fake fastqc binary." \ No newline at end of file diff --git a/tests/configuration.json b/tests/configuration.json new file mode 100644 index 00000000..3ac47365 --- /dev/null +++ b/tests/configuration.json @@ -0,0 +1,6 @@ +{ + "archive_path": "tests/data/sequencing/knight_lab_completed_runs", + "search_paths": ["/tmp", "tests/data"], + "amplicon_search_paths": ["/tmp", "tests/data"], + "profiles_path": "tests/data/configuration_profiles" +} diff --git a/qp_klp/tests/data/20230101_XX99999999_99_LOL99999-9999.NYU_BMS_Melanoma_13059.1.tsv b/tests/data/20230101_XX99999999_99_LOL99999-9999.NYU_BMS_Melanoma_13059.1.tsv similarity index 100% rename from qp_klp/tests/data/20230101_XX99999999_99_LOL99999-9999.NYU_BMS_Melanoma_13059.1.tsv rename to tests/data/20230101_XX99999999_99_LOL99999-9999.NYU_BMS_Melanoma_13059.1.tsv diff --git a/tests/data/20230906_FS10001773_68_BTR67708-1611.csv b/tests/data/20230906_FS10001773_68_BTR67708-1611.csv new file mode 100644 index 00000000..f696f0c9 --- /dev/null +++ b/tests/data/20230906_FS10001773_68_BTR67708-1611.csv @@ -0,0 +1,41 @@ +Sample_ID,Sample_Name,Sample_Plate,Sample_Well,Barcode_96_Well_Position,Barcode_ID,Sample_Project,Well_description,Lane +Person.A.TELLSEQ.R20.microbe,Person.A.TELLSEQ.R20.microbe,TellSeq3_15196_P3,A1,A4,C525,TellSeq3_15196_P3,Person.A.TELLSEQ.R20.microbe,1 +Person.B.TELLSEQ.R24.microbe,Person.B.TELLSEQ.R24.microbe,TellSeq3_15196_P3,B1,B4,C526,TellSeq3_15196_P3,Person.B.TELLSEQ.R24.microbe,1 +Person.C.TELLSEQ.R21.microbe,Person.C.TELLSEQ.R21.microbe,TellSeq3_15196_P3,C1,C4,C527,TellSeq3_15196_P3,Person.C.TELLSEQ.R21.microbe,1 +Person.D.TELLSEQ.R26.microbe,Person.D.TELLSEQ.R26.microbe,TellSeq3_15196_P3,D1,D4,C528,TellSeq3_15196_P3,Person.D.TELLSEQ.R26.microbe,1 +Person.E.TELLSEQ.R19.microbe,Person.E.TELLSEQ.R19.microbe,TellSeq3_15196_P3,E1,E4,C529,TellSeq3_15196_P3,Person.E.TELLSEQ.R19.microbe,1 +Pet.C.TELLSEQ.R23.microbe,Pet.C.TELLSEQ.R23.microbe,TellSeq3_15196_P3,F1,F4,C530,TellSeq3_15196_P3,Pet.C.TELLSEQ.R23.microbe,1 +BLANK.TELLSEQ.3.12.H.microbe,BLANK.TELLSEQ.3.12.H.microbe,TellSeq3_15196_P3,G1,G4,C531,TellSeq3_15196_P3,BLANK.TELLSEQ.3.12.H.microbe,1 +Isolate.115.R1.microbe,Isolate.115.R1.microbe,TellSeq3_15196_P1,H1,H4,C532,TellSeq3_15196_P3,Isolate.115.R1.microbe,1 +Zymo.Mock.Community.R1.microbe,Zymo.Mock.Community.R1.microbe,TellSeq3_15196_P1,A2,A5,C533,TellSeq3_15196_P3,Zymo.Mock.Community.R1.microbe,1 +E.coli.QC.DNA.R1.microbe,E.coli.QC.DNA.R1.microbe,TellSeq3_15196_P1,B2,B5,C534,TellSeq3_15196_P3,E.coli.QC.DNA.R1.microbe,1 +Person.A.TELLSEQ.R20.purified.microbe,Person.A.TELLSEQ.R20.purified.microbe,TellSeq3_15196_P3,C2,C5,C535,TellSeq3_15196_P3,Person.A.TELLSEQ.R20.purified.microbe,1 +Person.B.TELLSEQ.R24.purified.microbe,Person.B.TELLSEQ.R24.purified.microbe,TellSeq3_15196_P3,D2,D5,C536,TellSeq3_15196_P3,Person.B.TELLSEQ.R24.purified.microbe,1 +Person.C.TELLSEQ.R21.purified.microbe,Person.C.TELLSEQ.R21.purified.microbe,TellSeq3_15196_P3,E2,E5,C537,TellSeq3_15196_P3,Person.C.TELLSEQ.R21.purified.microbe,1 +Person.D.TELLSEQ.R26.purified.microbe,Person.D.TELLSEQ.R26.purified.microbe,TellSeq3_15196_P3,F2,F5,C538,TellSeq3_15196_P3,Person.D.TELLSEQ.R26.purified.microbe,1 +Person.E.TELLSEQ.R19.purified.microbe,Person.E.TELLSEQ.R19.purified.microbe,TellSeq3_15196_P3,G2,G5,C539,TellSeq3_15196_P3,Person.E.TELLSEQ.R19.purified.microbe,1 +Pet.C.TELLSEQ.R23.purified.microbe,Pet.C.TELLSEQ.R23.purified.microbe,TellSeq3_15196_P3,H2,H5,C540,TellSeq3_15196_P3,Pet.C.TELLSEQ.R23.purified.microbe,1 +BLANK.TELLSEQ.3.12.H.purified.microbe,BLANK.TELLSEQ.3.12.H.purified.microbe,TellSeq3_15196_P3,A3,A6,C541,TellSeq3_15196_P3,BLANK.TELLSEQ.3.12.H.purified.microbe,1 +Isolate.115.R2.microbe,Isolate.115.R2.microbe,TellSeq3_15196_P1,B3,B6,C542,TellSeq3_15196_P3,Isolate.115.R2.microbe,1 +Zymo.Mock.Community.R2.microbe,Zymo.Mock.Community.R2.microbe,TellSeq3_15196_P1,C3,C6,C543,TellSeq3_15196_P3,Zymo.Mock.Community.R2.microbe,1 +E.coli.QC.DNA.R2.microbe,E.coli.QC.DNA.R2.microbe,TellSeq3_15196_P1,D3,D6,C544,TellSeq3_15196_P3,E.coli.QC.DNA.R2.microbe,1 +Person.A.TELLSEQ.R20.std,Person.A.TELLSEQ.R20.std,TellSeq3_15196_P3,A1,A1,C501,TellSeq3_15196,Person.A.TELLSEQ.R20.std,1 +Person.B.TELLSEQ.R24.std,Person.B.TELLSEQ.R24.std,TellSeq3_15196_P3,B1,B1,C502,TellSeq3_15196,Person.B.TELLSEQ.R24.std,1 +Person.C.TELLSEQ.R21.std,Person.C.TELLSEQ.R21.std,TellSeq3_15196_P3,C1,C1,C503,TellSeq3_15196,Person.C.TELLSEQ.R21.std,1 +Person.D.TELLSEQ.R26.std,Person.D.TELLSEQ.R26.std,TellSeq3_15196_P3,D1,D1,C504,TellSeq3_15196,Person.D.TELLSEQ.R26.std,1 +Person.E.TELLSEQ.R19.std,Person.E.TELLSEQ.R19.std,TellSeq3_15196_P3,E1,E1,C505,TellSeq3_15196,Person.E.TELLSEQ.R19.std,1 +Pet.C.TELLSEQ.R23.std,Pet.C.TELLSEQ.R23.std,TellSeq3_15196_P3,F1,F1,C506,TellSeq3_15196,Pet.C.TELLSEQ.R23.std,1 +BLANK.TELLSEQ.3.12.H.std,BLANK.TELLSEQ.3.12.H.std,TellSeq3_15196_P3,G1,G1,C507,TellSeq3_15196,BLANK.TELLSEQ.3.12.H.std,1 +Isolate.115.R1.std,Isolate.115.R1.std,TellSeq3_15196_P1,H1,H1,C508,TellSeq3_15196,Isolate.115.R1.std,1 +Zymo.Mock.Community.R1.std,Zymo.Mock.Community.R1.std,TellSeq3_15196_P1,A2,A2,C509,TellSeq3_15196,Zymo.Mock.Community.R1.std,1 +E.coli.QC.DNA.R1.std,E.coli.QC.DNA.R1.std,TellSeq3_15196_P1,B2,B2,C510,TellSeq3_15196,E.coli.QC.DNA.R1.std,1 +Person.A.TELLSEQ.R20.purified.std,Person.A.TELLSEQ.R20.purified.std,TellSeq3_15196_P3,C2,C2,C511,TellSeq3_15196,Person.A.TELLSEQ.R20.purified.std,1 +Person.B.TELLSEQ.R24.purified.std,Person.B.TELLSEQ.R24.purified.std,TellSeq3_15196_P3,D2,D2,C512,TellSeq3_15196,Person.B.TELLSEQ.R24.purified.std,1 +Person.C.TELLSEQ.R21.purified.std,Person.C.TELLSEQ.R21.purified.std,TellSeq3_15196_P3,E2,E2,C513,TellSeq3_15196,Person.C.TELLSEQ.R21.purified.std,1 +Person.D.TELLSEQ.R26.purified.std,Person.D.TELLSEQ.R26.purified.std,TellSeq3_15196_P3,F2,F2,C514,TellSeq3_15196,Person.D.TELLSEQ.R26.purified.std,1 +Person.E.TELLSEQ.R19.purified.std,Person.E.TELLSEQ.R19.purified.std,TellSeq3_15196_P3,G2,G2,C515,TellSeq3_15196,Person.E.TELLSEQ.R19.purified.std,1 +Pet.C.TELLSEQ.R23.purified.std,Pet.C.TELLSEQ.R23.purified.std,TellSeq3_15196_P3,H2,H2,C516,TellSeq3_15196,Pet.C.TELLSEQ.R23.purified.std,1 +BLANK.TELLSEQ.3.12.H.purified.std,BLANK.TELLSEQ.3.12.H.purified.std,TellSeq3_15196_P3,A3,A3,C517,TellSeq3_15196,BLANK.TELLSEQ.3.12.H.purified.std,1 +Isolate.115.R2.std,Isolate.115.R2.std,TellSeq3_15196_P1,B3,B3,C518,TellSeq3_15196,Isolate.115.R2.std,1 +Zymo.Mock.Community.R2.std,Zymo.Mock.Community.R2.std,TellSeq3_15196_P1,C3,C3,C519,TellSeq3_15196,Zymo.Mock.Community.R2.std,1 +E.coli.QC.DNA.R2.std,E.coli.QC.DNA.R2.std,TellSeq3_15196_P1,D3,D3,C520,TellSeq3_15196,E.coli.QC.DNA.R2.std,1 diff --git a/tests/data/211021_A00000_0000_SAMPLE/Data/Fastq/project1/sample1_R1_.fastq.gz b/tests/data/211021_A00000_0000_SAMPLE/Data/Fastq/project1/sample1_R1_.fastq.gz new file mode 100644 index 00000000..e69de29b diff --git a/tests/data/211021_A00000_0000_SAMPLE/Data/Fastq/project1/sample1_R2_.fastq.gz b/tests/data/211021_A00000_0000_SAMPLE/Data/Fastq/project1/sample1_R2_.fastq.gz new file mode 100644 index 00000000..e69de29b diff --git a/tests/data/211021_A00000_0000_SAMPLE/Data/Fastq/project1/sample2_R1_.fastq.gz b/tests/data/211021_A00000_0000_SAMPLE/Data/Fastq/project1/sample2_R1_.fastq.gz new file mode 100644 index 00000000..e69de29b diff --git a/tests/data/211021_A00000_0000_SAMPLE/Data/Fastq/project1/sample2_R2_.fastq.gz b/tests/data/211021_A00000_0000_SAMPLE/Data/Fastq/project1/sample2_R2_.fastq.gz new file mode 100644 index 00000000..e69de29b diff --git a/tests/data/211021_A00000_0000_SAMPLE/Data/Intensities/BaseCalls/L003/fake.bcl b/tests/data/211021_A00000_0000_SAMPLE/Data/Intensities/BaseCalls/L003/fake.bcl new file mode 100644 index 00000000..5d177a17 --- /dev/null +++ b/tests/data/211021_A00000_0000_SAMPLE/Data/Intensities/BaseCalls/L003/fake.bcl @@ -0,0 +1 @@ +this is a text file. diff --git a/qp_klp/tests/data/211021_A00000_0000_SAMPLE/RTAComplete.txt b/tests/data/211021_A00000_0000_SAMPLE/RTAComplete.txt similarity index 100% rename from qp_klp/tests/data/211021_A00000_0000_SAMPLE/RTAComplete.txt rename to tests/data/211021_A00000_0000_SAMPLE/RTAComplete.txt diff --git a/qp_klp/tests/data/211021_A00000_0000_SAMPLE/RunInfo.xml b/tests/data/211021_A00000_0000_SAMPLE/RunInfo.xml similarity index 100% rename from qp_klp/tests/data/211021_A00000_0000_SAMPLE/RunInfo.xml rename to tests/data/211021_A00000_0000_SAMPLE/RunInfo.xml diff --git a/tests/data/211021_A00000_0000_SAMPLE/sample-sequence-directory/project1/filtered_sequences/sample1_R1_.trimmed.fastq.gz b/tests/data/211021_A00000_0000_SAMPLE/sample-sequence-directory/project1/filtered_sequences/sample1_R1_.trimmed.fastq.gz new file mode 100644 index 00000000..e69de29b diff --git a/tests/data/211021_A00000_0000_SAMPLE/sample-sequence-directory/project1/filtered_sequences/sample1_R2_.trimmed.fastq.gz b/tests/data/211021_A00000_0000_SAMPLE/sample-sequence-directory/project1/filtered_sequences/sample1_R2_.trimmed.fastq.gz new file mode 100644 index 00000000..e69de29b diff --git a/tests/data/211021_A00000_0000_SAMPLE/sample-sequence-directory/project1/filtered_sequences/sample2_R1_.trimmed.fastq.gz b/tests/data/211021_A00000_0000_SAMPLE/sample-sequence-directory/project1/filtered_sequences/sample2_R1_.trimmed.fastq.gz new file mode 100644 index 00000000..e69de29b diff --git a/tests/data/211021_A00000_0000_SAMPLE/sample-sequence-directory/project1/filtered_sequences/sample2_R2_.trimmed.fastq.gz b/tests/data/211021_A00000_0000_SAMPLE/sample-sequence-directory/project1/filtered_sequences/sample2_R2_.trimmed.fastq.gz new file mode 100644 index 00000000..e69de29b diff --git a/qp_klp/tests/data/Demultiplex_Stats.csv b/tests/data/Demultiplex_Stats.csv similarity index 100% rename from qp_klp/tests/data/Demultiplex_Stats.csv rename to tests/data/Demultiplex_Stats.csv diff --git a/tests/data/RunInfo_Good1.xml b/tests/data/RunInfo_Good1.xml new file mode 100644 index 00000000..38d63116 --- /dev/null +++ b/tests/data/RunInfo_Good1.xml @@ -0,0 +1,16 @@ + + + + 000000000-XXXXX + M09999 + 170523 + + + + + + + + + diff --git a/tests/data/RunInfo_Good2.xml b/tests/data/RunInfo_Good2.xml new file mode 100644 index 00000000..d0bd6e31 --- /dev/null +++ b/tests/data/RunInfo_Good2.xml @@ -0,0 +1,15 @@ + + + + 000000000-XXXXX + M09999 + 170523 + + + + + + + + diff --git a/tests/data/SeqCounts.csv b/tests/data/SeqCounts.csv new file mode 100644 index 00000000..fe601c4c --- /dev/null +++ b/tests/data/SeqCounts.csv @@ -0,0 +1,3 @@ +Sample_ID,raw_reads_r1r2,Lane +Test_8_22_2014_R1_example,140798056,4 +Test_8_22_2014_R2_example,128928324,4 diff --git a/tests/data/bad-sample-sheet-bool-test.csv b/tests/data/bad-sample-sheet-bool-test.csv new file mode 100644 index 00000000..1e284ac8 --- /dev/null +++ b/tests/data/bad-sample-sheet-bool-test.csv @@ -0,0 +1,816 @@ +[Header],,,,,,,,,,, +IEMFileVersion,4,,,,,,,,,, +Investigator Name,Knight,,,,,,,,,, +SheetType,standard_metag,,,,,,,,,, +SheetVersion,100,,,,,,,,,, +Experiment Name,RKL0042,,,,,,,,,, +Date,2020-02-26,,,,,,,,,, +Workflow,GenerateFASTQ,,,,,,,,,, +Application,FASTQ Only,,,,,,,,,, +Assay,Metagenomic,,,,,,,,,, +Description,,,,,,,,,,, +Chemistry,Default,,,,,,,,,, +,,,,,,,,,,, +[Reads],,,,,,,,,,, +150,,,,,,,,,,, +150,,,,,,,,,,, +,,,,,,,,,,, +[Settings],,,,,,,,,,, +ReverseComplement,0,,,,,,,,,, +,,,,,,,,,,, +[Data],,,,,,,,,,, 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+1,Pputida_PALE__HGL_Pputida_145,Pputida.PALE.HGL.Pputida.145,Feist_11661_P41_diluted,M10,iTru7_204_09,AGGAACCT,iTru5_15_D,ACAAGACG,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_145 +1,Pputida_PALE__HGL_Pputida_146,Pputida.PALE.HGL.Pputida.146,Feist_11661_P41_diluted,O10,iTru7_204_10,ACCTTCTC,iTru5_16_D,ATCGTGGT,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_146 +1,Pputida_PALE__HGL_Pputida_147,Pputida.PALE.HGL.Pputida.147,Feist_11661_P41_diluted,A12,iTru7_204_11,CCGTAAGA,iTru5_17_D,AGTCAGGT,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_147 +1,Pputida_PALE__HGL_Pputida_148,Pputida.PALE.HGL.Pputida.148,Feist_11661_P41_diluted,C12,iTru7_204_12,ATCGGTGT,iTru5_18_D,CATCAACC,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_148 +1,Pputida_PALE__HGL_Pputida_149,Pputida.PALE.HGL.Pputida.149,Feist_11661_P41_diluted,E12,iTru7_205_01,AGCTCCTA,iTru5_19_D,GGTCACTA,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_149 +1,Pputida_PALE__HGL_Pputida_150,Pputida.PALE.HGL.Pputida.150,Feist_11661_P41,G12,iTru7_205_02,CCTTGATC,iTru5_20_D,CGGCATTA,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_150 +1,Pputida_PALE__HGL_Pputida_151,Pputida.PALE.HGL.Pputida.151,Feist_11661_P41_diluted,I12,iTru7_205_03,CCATTCAC,iTru5_21_D,ACTCGATC,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_151 +1,Pputida_PALE__HGL_Pputida_152,Pputida.PALE.HGL.Pputida.152,Feist_11661_P41,K12,iTru7_205_04,GGACAATC,iTru5_22_D,ATAGGTCC,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_152 +1,Pputida_PALE__HGL_Pputida_153,Pputida.PALE.HGL.Pputida.153,Feist_11661_P41,M12,iTru7_205_05,AAGGCGTT,iTru5_23_D,CAGTCACA,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_153 +1,Pputida_PALE__HGL_Pputida_154,Pputida.PALE.HGL.Pputida.154,Feist_11661_P41_diluted,O12,iTru7_205_06,GCCATAAC,iTru5_24_D,TAGTGGTG,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_154 +1,Pputida_PALE__HGL_Pputida_155,Pputida.PALE.HGL.Pputida.155,Feist_11661_P41_diluted,A14,iTru7_205_07,GAAGTTGG,iTru5_13_E,CTCCTGAA,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_155 +1,Pputida_PALE__HGL_Pputida_156,Pputida.PALE.HGL.Pputida.156,Feist_11661_P41_diluted,C14,iTru7_205_08,AGCCAAGT,iTru5_14_E,AATCGCTG,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_156 +1,Pputida_PALE__HGL_Pputida_157,Pputida.PALE.HGL.Pputida.157,Feist_11661_P41,E14,iTru7_205_09,TGACTGAC,iTru5_15_E,TGATAGGC,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_157 +1,Pputida_PALE__HGL_Pputida_158,Pputida.PALE.HGL.Pputida.158,Feist_11661_P41_diluted,G14,iTru7_205_10,CACCTGTT,iTru5_16_E,ATGCGTCA,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_158 +1,Pputida_PALE__HGL_Pputida_159,Pputida.PALE.HGL.Pputida.159,Feist_11661_P41,I14,iTru7_205_11,ATCCGGTA,iTru5_17_E,CAGCATAC,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_159 +1,Pputida_PALE__HGL_Pputida_160,Pputida.PALE.HGL.Pputida.160,Feist_11661_P41,K14,iTru7_205_12,ATCTGTCC,iTru5_18_E,AAGTGCAG,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_160 +1,Pputida_PALE__HGL_Pputida_161,Pputida.PALE.HGL.Pputida.161,Feist_11661_P41_diluted,M14,iTru7_206_01,CCAAGACT,iTru5_19_E,GTATTCCG,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_161 +1,Pputida_PALE__HGL_Pputida_162,Pputida.PALE.HGL.Pputida.162,Feist_11661_P41_diluted,O14,iTru7_206_02,ATGGCGAA,iTru5_20_E,GTGATCCA,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_162 +1,Pputida_PALE__HGL_Pputida_163,Pputida.PALE.HGL.Pputida.163,Feist_11661_P41_diluted,A16,iTru7_206_03,GGTAGTGT,iTru5_21_E,TATGGCAC,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_163 +1,Pputida_PALE__HGL_Pputida_164,Pputida.PALE.HGL.Pputida.164,Feist_11661_P41,C16,iTru7_206_04,TCGCTGTT,iTru5_22_E,ACCATAGG,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_164 +1,Pputida_PALE__HGL_Pputida_165,Pputida.PALE.HGL.Pputida.165,Feist_11661_P41_diluted,E16,iTru7_206_05,AACGTGGA,iTru5_23_E,CTCCAATC,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_165 +1,Pputida_PALE__HGL_Pputida_166,Pputida.PALE.HGL.Pputida.166,Feist_11661_P41,G16,iTru7_206_06,AACGACGT,iTru5_24_E,AGATACGG,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_166 +1,Pputida_PALE__HGL_Pputida_167,Pputida.PALE.HGL.Pputida.167,Feist_11661_P41,I16,iTru7_206_07,AACAGGAC,iTru5_13_F,TCGATGAC,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_167 +1,Pputida_PALE__HGL_Pputida_168,Pputida.PALE.HGL.Pputida.168,Feist_11661_P41,K16,iTru7_206_08,AAGCGCAT,iTru5_14_F,CCAACACT,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_168 +1,Pputida_PALE__HGL_Pputida_169,Pputida.PALE.HGL.Pputida.169,Feist_11661_P41,M16,iTru7_206_09,CACTGACA,iTru5_15_F,CTTCACTG,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_169 +1,Pputida_PALE__HGL_Pputida_170,Pputida.PALE.HGL.Pputida.170,Feist_11661_P41,O16,iTru7_206_10,AGGTCACT,iTru5_16_F,CGATGTTC,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_170 +1,Pputida_PALE__HGL_Pputida_171,Pputida.PALE.HGL.Pputida.171,Feist_11661_P41,A18,iTru7_206_11,GTCACTGT,iTru5_17_F,ACCGGTTA,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_171 +1,Pputida_PALE__HGL_Pputida_172,Pputida.PALE.HGL.Pputida.172,Feist_11661_P41,C18,iTru7_206_12,ATGCCAAC,iTru5_18_F,CTTACAGC,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_172 +1,Pputida_PALE__HGL_Pputida_173,Pputida.PALE.HGL.Pputida.173,Feist_11661_P41,E18,iTru7_207_01,CACGTTGT,iTru5_19_F,TGGCTCTT,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_173 +1,Pputida_PALE__HGL_Pputida_174,Pputida.PALE.HGL.Pputida.174,Feist_11661_P41_diluted,G18,iTru7_207_02,TATTCCGG,iTru5_20_F,AAGACCGT,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_174 +1,Pputida_PALE__HGL_Pputida_175,Pputida.PALE.HGL.Pputida.175,Feist_11661_P41,I18,iTru7_207_03,TGCTTCCA,iTru5_21_F,GGACATCA,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_175 +1,Pputida_PALE__HGL_Pputida_176,Pputida.PALE.HGL.Pputida.176,Feist_11661_P41_diluted,K18,iTru7_207_04,GTCTAGGT,iTru5_22_F,TTGGTGCA,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_176 +1,JM-Metabolic__GN0_2005,JM-Metabolic.GN0.2005,Feist_11661_P41,M18,iTru7_207_05,GTTCAACC,iTru5_23_F,AAGCGTTC,Feist_11661,pool1,JM-Metabolic__GN0_2005 +1,JM-Metabolic__GN0_2007,JM-Metabolic.GN0.2007,Feist_11661_P41,O18,iTru7_207_06,CGCAATCT,iTru5_24_F,ACTCTCCA,Feist_11661,pool2,JM-Metabolic__GN0_2007 +1,JM-Metabolic__GN0_2009,JM-Metabolic.GN0.2009,Feist_11661_P41,A20,iTru7_207_07,TTAAGCGG,iTru5_13_G,GAACCTTC,Feist_11661,pool1,JM-Metabolic__GN0_2009 +1,JM-Metabolic__GN0_2094,JM-Metabolic.GN0.2094,Feist_11661_P41_diluted,C20,iTru7_207_08,TGCTTGGT,iTru5_14_G,GGAACATG,Feist_11661,pool2,JM-Metabolic__GN0_2094 +1,JM-Metabolic__GN0_2099,JM-Metabolic.GN0.2099,Feist_11661_P41_diluted,E20,iTru7_207_09,ACACACTC,iTru5_15_G,GCCTATGT,Feist_11661,pool1,JM-Metabolic__GN0_2099 +1,JM-Metabolic__GN0_2148,JM-Metabolic.GN0.2148,Feist_11661_P41_diluted,G20,iTru7_207_10,CCACTTCT,iTru5_16_G,CCGTAACT,Feist_11661,pool2,JM-Metabolic__GN0_2148 +1,JM-Metabolic__GN0_2165,JM-Metabolic.GN0.2165,Feist_11661_P41_diluted,I20,iTru7_207_11,TTGGTCTC,iTru5_17_G,CGGATCAA,Feist_11661,pool1,JM-Metabolic__GN0_2165 +1,JM-Metabolic__GN0_2169,JM-Metabolic.GN0.2169,Feist_11661_P41,K20,iTru7_207_12,CTCATCAG,iTru5_18_G,CCACATTG,Feist_11661,pool2,JM-Metabolic__GN0_2169 +1,JM-Metabolic__GN0_2172,JM-Metabolic.GN0.2172,Feist_11661_P41,M20,iTru7_208_01,ATGACGTC,iTru5_19_G,CTCTATCG,Feist_11661,pool1,JM-Metabolic__GN0_2172 +1,JM-Metabolic__GN0_2175,JM-Metabolic.GN0.2175,Feist_11661_P41,O20,iTru7_208_02,AACCTTGG,iTru5_20_G,TGTGTCAG,Feist_11661,pool2,JM-Metabolic__GN0_2175 +1,JM-Metabolic__GN0_2183,JM-Metabolic.GN0.2183,Feist_11661_P41_diluted,A22,iTru7_208_03,GTCTTGCA,iTru5_21_G,CGCAACTA,Feist_11661,pool1,JM-Metabolic__GN0_2183 +1,JM-Metabolic__GN0_2215,JM-Metabolic.GN0.2215,Feist_11661_P41_diluted,C22,iTru7_208_04,CAAGTGCA,iTru5_22_G,GATCAGAC,Feist_11661,pool2,JM-Metabolic__GN0_2215 +1,JM-Metabolic__GN0_2254,JM-Metabolic.GN0.2254,Feist_11661_P41_diluted,E22,iTru7_208_05,TCCGAGTT,iTru5_23_G,ATTCCGCT,Feist_11661,pool1,JM-Metabolic__GN0_2254 +1,JM-Metabolic__GN0_2277,JM-Metabolic.GN0.2277,Feist_11661_P41_diluted,G22,iTru7_208_06,ACCTAAGG,iTru5_24_G,ATCCTTCC,Feist_11661,pool2,JM-Metabolic__GN0_2277 +1,JM-Metabolic__GN0_2290,JM-Metabolic.GN0.2290,Feist_11661_P41,I22,iTru7_208_07,TTGGACGT,iTru5_13_H,GCTTCACA,Feist_11661,pool1,JM-Metabolic__GN0_2290 +1,JM-Metabolic__GN0_2337,JM-Metabolic.GN0.2337,Feist_11661_P41_diluted,K22,iTru7_208_08,GATAGCGA,iTru5_14_H,CTTCGGTT,Feist_11661,pool2,JM-Metabolic__GN0_2337 +1,JM-Metabolic__GN0_2317,JM-Metabolic.GN0.2317,Feist_11661_P41_diluted,M22,iTru7_208_09,TTGGTGAG,iTru5_15_H,CATGGATC,Feist_11661,pool1,JM-Metabolic__GN0_2317 +1,JM-Metabolic__GN0_2354,JM-Metabolic.GN0.2354,Feist_11661_P41_diluted,O22,iTru7_208_10,AACTGGTG,iTru5_16_H,GTCAACAG,Feist_11661,pool2,JM-Metabolic__GN0_2354 +1,JM-Metabolic__GN0_2375,JM-Metabolic.GN0.2375,Feist_11661_P41_diluted,A24,iTru7_208_11,TAGCCGAA,iTru5_17_H,AATTCCGG,Feist_11661,pool1,JM-Metabolic__GN0_2375 +1,JM-Metabolic__GN0_2380,JM-Metabolic.GN0.2380,Feist_11661_P41_diluted,C24,iTru7_208_12,TGCGAACT,iTru5_18_H,GGCGAATA,Feist_11661,pool2,JM-Metabolic__GN0_2380 +1,JM-Metabolic__GN0_2393,JM-Metabolic.GN0.2393,Feist_11661_P41_diluted,E24,iTru7_209_01,GACTTAGG,iTru5_19_H,AGGAGGTT,Feist_11661,pool1,JM-Metabolic__GN0_2393 +1,JM-Metabolic__GN0_2404,JM-Metabolic.GN0.2404,Feist_11661_P41_diluted,G24,iTru7_209_02,ACACCAGT,iTru5_20_H,ACTCTGAG,Feist_11661,pool2,JM-Metabolic__GN0_2404 +1,5B,5B,Gerwick_tubes,I24,iTru7_209_03,CCTGATTG,iTru5_21_H,GCCTTCTT,Gerwick_6123,pool1,5B +1,6A,6A,Gerwick_tubes,K24,iTru7_209_04,TTGTGTGC,iTru5_22_H,TGGACCAT,Gerwick_6123,pool2,6A +1,BLANK_41_12G,BLANK.41.12G,Feist_11661_P41,M24,iTru7_209_05,TACCACAG,iTru5_23_H,GCATAGTC,Gerwick_6123,pool1,BLANK.41.12G +1,BLANK_41_12H,BLANK.41.12H,Feist_11661_P41,O24,iTru7_209_06,ATTCGAGG,iTru5_24_H,TACACACG,Feist_11661,pool2,BLANK.41.12H +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_14,Deoxyribose.PALE.ALE.MG1655.BOP27.4.14,Feist_11661_P42,B1,iTru7_209_07,GCACGTAA,iTru5_101_A,AACAACCG,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_BOP27_4_14 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_23,Deoxyribose.PALE.ALE.MG1655.BOP27.4.23,Feist_11661_P42,D1,iTru7_209_08,GTGTGACA,iTru5_102_A,AAGCCTGA,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_BOP27_4_23 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_48,Deoxyribose.PALE.ALE.MG1655.BOP27.4.48,Feist_11661_P42,F1,iTru7_209_09,CTGGTTCT,iTru5_103_A,AAGGACCA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_BOP27_4_48 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_6_21,Deoxyribose.PALE.ALE.MG1655.BOP27.6.21,Feist_11661_P42,H1,iTru7_209_10,ACTGTGTC,iTru5_104_A,ACAACGTG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_BOP27_6_21 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_6_35,Deoxyribose.PALE.ALE.MG1655.BOP27.6.35,Feist_11661_P42,J1,iTru7_209_11,CCATACGT,iTru5_105_A,ACGAACGA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_BOP27_6_35 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_13,Deoxyribose.PALE.ALE.MG1655.BOP27.10.13,Feist_11661_P42,L1,iTru7_209_12,GGTACTAC,iTru5_106_A,ACGTCCAA,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_BOP27_10_13 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_28,Deoxyribose.PALE.ALE.MG1655.BOP27.10.28,Feist_11661_P42,N1,iTru7_210_01,CAGTCCAA,iTru5_107_A,ACTGGTGT,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_BOP27_10_28 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_51,Deoxyribose.PALE.ALE.MG1655.BOP27.10.51,Feist_11661_P42,P1,iTru7_210_02,TCGTAGTC,iTru5_108_A,AGATCGTC,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_BOP27_10_51 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_19,Deoxyribose.PALE.ALE.MG1655.Lib4.18.19,Feist_11661_P42,B3,iTru7_210_03,TCGAGTGA,iTru5_109_A,AGCGAGAT,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_18_19 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_59,Deoxyribose.PALE.ALE.MG1655.Lib4.18.59,Feist_11661_P42,D3,iTru7_210_04,TGTAGCCA,iTru5_110_A,AGGATAGC,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_18_59 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_35,Deoxyribose.PALE.ALE.MG1655.Lib4.18.35,Feist_11661_P42,F3,iTru7_210_05,TGCAGGTA,iTru5_111_A,AGGTGTTG,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_18_35 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_16,Deoxyribose.PALE.ALE.MG1655.Lib4.20.16,Feist_11661_P42,H3,iTru7_210_06,CTAGGTGA,iTru5_112_A,AGTCTTGG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_20_16 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_43,Deoxyribose.PALE.ALE.MG1655.Lib4.20.43,Feist_11661_P42,J3,iTru7_210_07,CTCCATGT,iTru5_101_B,GGTTGGTA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_20_43 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_71,Deoxyribose.PALE.ALE.MG1655.Lib4.20.71,Feist_11661_P42,L3,iTru7_210_08,CTTACAGC,iTru5_102_B,GGAGGAAT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_20_71 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_16,Deoxyribose.PALE.ALE.MG1655.Lib4.22.16,Feist_11661_P42,N3,iTru7_210_09,CGTATTCG,iTru5_103_B,GTAAGGTG,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_22_16 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_28,Deoxyribose.PALE.ALE.MG1655.Lib4.22.28,Feist_11661_P42,P3,iTru7_210_10,ATTCTGGC,iTru5_104_B,GGTGTACA,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_22_28 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_52,Deoxyribose.PALE.ALE.MG1655.Lib4.22.52,Feist_11661_P42,B5,iTru7_210_11,TACCAGGA,iTru5_105_B,GGATGTAG,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_22_52 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_9,Deoxyribose.PALE.ALE.MG1655.Lib4.24.9,Feist_11661_P42,D5,iTru7_210_12,TACATCGG,iTru5_106_B,GTCCTGTT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_24_9 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_24,Deoxyribose.PALE.ALE.MG1655.Lib4.24.24,Feist_11661_P42,F5,iTru7_301_01,GTGGTGTT,iTru5_107_B,GTACCACA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_24_24 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_52,Deoxyribose.PALE.ALE.MG1655.Lib4.24.52,Feist_11661_P42,H5,iTru7_301_02,CGCATGAT,iTru5_108_B,GATCTCAG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_24_52 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_6,Deoxyribose.PALE.ALE.MG1655.Lib4.26.6,Feist_11661_P42,J5,iTru7_301_03,AGTCGACA,iTru5_109_B,GAGCTCTA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_26_6 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_27,Deoxyribose.PALE.ALE.MG1655.Lib4.26.27,Feist_11661_P42,L5,iTru7_301_04,GTGAGCTT,iTru5_110_B,TACTAGCG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_26_27 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_69,Deoxyribose.PALE.ALE.MG1655.Lib4.26.69,Feist_11661_P42,N5,iTru7_301_05,GACATTCC,iTru5_111_B,GCACACAA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_26_69 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_13,Deoxyribose.PALE.ALE.MG1655.Lib4.28.13,Feist_11661_P42,P5,iTru7_301_06,AGTTCGTC,iTru5_112_B,GAATCACC,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_28_13 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_28,Deoxyribose.PALE.ALE.MG1655.Lib4.28.28,Feist_11661_P42,B7,iTru7_301_07,TAATGCCG,iTru5_101_C,AACAGCGA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_28_28 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_53,Deoxyribose.PALE.ALE.MG1655.Lib4.28.53,Feist_11661_P42,D7,iTru7_301_08,CGACCATT,iTru5_102_C,AAGCGACT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_28_53 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_7,Deoxyribose.PALE.ALE.MG1655.Lib4.30.7,Feist_11661_P42,F7,iTru7_301_09,CTGAAGCT,iTru5_103_C,AAGGCGTA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_30_7 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_22,Deoxyribose.PALE.ALE.MG1655.Lib4.30.22,Feist_11661_P42,H7,iTru7_301_10,TTGAGGCA,iTru5_104_C,ACACCGAT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_30_22 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_60,Deoxyribose.PALE.ALE.MG1655.Lib4.30.60,Feist_11661_P42,J7,iTru7_301_11,GATCGAGT,iTru5_105_C,ACGAATCC,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_30_60 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_6,Deoxyribose.PALE.ALE.MG1655.Lib4.32.6,Feist_11661_P42,L7,iTru7_301_12,ATACTCCG,iTru5_106_C,ACTACGGT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_32_6 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_20,Deoxyribose.PALE.ALE.MG1655.Lib4.32.20,Feist_11661_P42,N7,iTru7_302_01,AAGTCCGT,iTru5_107_C,AGAAGCCT,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_32_20 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_56,Deoxyribose.PALE.ALE.MG1655.Lib4.32.56,Feist_11661_P42,P7,iTru7_302_02,TAGCGTCT,iTru5_108_C,AGATTGCG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_32_56 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.1.24,Feist_11661_P42,B9,iTru7_302_03,TGACGCAT,iTru5_109_C,AGCGTGTA,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_24 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.1.57,Feist_11661_P42,D9,iTru7_302_04,AGCGTGTT,iTru5_110_C,AGGCTGAA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_57 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.1.69,Feist_11661_P42,F9,iTru7_302_05,TGCACCAA,iTru5_111_C,AGGTTCCT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_69 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.3.23,Feist_11661_P42,H9,iTru7_302_06,ATCACACG,iTru5_112_C,AGTGACCT,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.3.50,Feist_11661_P42,J9,iTru7_302_07,ATGCCTGT,iTru5_101_D,GGTTAGCT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_50 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.3.61,Feist_11661_P42,L9,iTru7_302_08,ACCTGACT,iTru5_102_D,GTAGCGTA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_61 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.5.22,Feist_11661_P42,N9,iTru7_302_09,GCTTCGAA,iTru5_103_D,GGACTACT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_22 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.5.36,Feist_11661_P42,P9,iTru7_302_10,CGGTCATA,iTru5_104_D,TGGTTCGA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_36 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.5.46,Feist_11661_P42,B11,iTru7_302_11,GTTAGACG,iTru5_105_D,GGAGTCTT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_46 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.7.23,Feist_11661_P42,D11,iTru7_302_12,TCTAACGC,iTru5_106_D,GGATTCAC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.7.41,Feist_11661_P42,F11,iTru7_303_01,ATAGCGGT,iTru5_107_D,TCGGATTC,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_41 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.7.51,Feist_11661_P42,H11,iTru7_303_02,GGACCTAT,iTru5_108_D,GAGCAATC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_51 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.17.25,Feist_11661_P42,J11,iTru7_303_03,CGATGCTT,iTru5_109_D,GATCCACT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.17.58,Feist_11661_P42,L11,iTru7_303_04,GAGCTTGT,iTru5_110_D,GAAGACTG,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_58 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.17.64,Feist_11661_P42,N11,iTru7_303_05,GTGAAGTG,iTru5_111_D,GCCACTTA,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_64 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.19.25,Feist_11661_P42,P11,iTru7_303_06,GAGTGGTT,iTru5_112_D,TCCATTGC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.19.55,Feist_11661_P42,B13,iTru7_303_07,TGATACGC,iTru5_101_E,AACAGTCC,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_55 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.19.63,Feist_11661_P42,D13,iTru7_303_08,AGCAGATG,iTru5_102_E,AAGCTCAC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_63 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.21.23,Feist_11661_P42,F13,iTru7_303_09,CCAGTGTT,iTru5_103_E,AAGTCCTC,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.21.46,Feist_11661_P42,H13,iTru7_303_10,ATTCCTCC,iTru5_104_E,ACACTCTG,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_46 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.21.51,Feist_11661_P42,J13,iTru7_303_11,CTAACTCG,iTru5_105_E,ACGGTACA,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_51 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.29.25,Feist_11661_P42,L13,iTru7_303_12,GATGAGAC,iTru5_106_E,ACTCCTAC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.29.49,Feist_11661_P42,N13,iTru7_304_01,TCAGGCTT,iTru5_107_E,AGAGGATG,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_49 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.29.57,Feist_11661_P42,P13,iTru7_304_02,GTTCTCGT,iTru5_108_E,AGCCGTAA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_57 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.31.24,Feist_11661_P42,B15,iTru7_304_03,ATCGATCG,iTru5_109_E,AGCTTCAG,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_24 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.31.42,Feist_11661_P42,D15,iTru7_304_04,CCTCAGTT,iTru5_110_E,AGGTAGGA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_42 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.31.62,Feist_11661_P42,F15,iTru7_304_05,ACTGCTAG,iTru5_111_E,AGTACACG,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_62 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.33.21,Feist_11661_P42,H15,iTru7_304_06,TCCGTGAA,iTru5_112_E,AGTGCATC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_21 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.33.41,Feist_11661_P42,J15,iTru7_304_07,GGATTCGT,iTru5_101_F,TTGGACTG,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_41 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.33.50,Feist_11661_P42,L15,iTru7_304_08,GGTCAGAT,iTru5_102_F,GTCGATTG,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_50 +1,JM-Metabolic__GN02514,JM-Metabolic.GN02514,Feist_11661_P42,N15,iTru7_304_09,TCGTGGAT,iTru5_103_F,GGCATTCT,Feist_11661,pool1,JM-Metabolic__GN02514 +1,JM-Metabolic__GN02529,JM-Metabolic.GN02529,Feist_11661_P42_diluted,P15,iTru7_304_10,CGTGTGTA,iTru5_104_F,TGGTATCC,Feist_11661,pool2,JM-Metabolic__GN02529 +1,JM-Metabolic__GN02531,JM-Metabolic.GN02531,Feist_11661_P42_diluted,B17,iTru7_304_11,GTGTCTGA,iTru5_105_F,GGCAAGTT,Feist_11661,pool1,JM-Metabolic__GN02531 +1,JM-Metabolic__GN02567,JM-Metabolic.GN02567,Feist_11661_P42,D17,iTru7_304_12,GAATCGTG,iTru5_106_F,GTCTGAGT,Feist_11661,pool2,JM-Metabolic__GN02567 +1,JM-Metabolic__GN02590,JM-Metabolic.GN02590,Feist_11661_P42_diluted,F17,iTru7_305_01,GCGATAGT,iTru5_107_F,TCTACGCA,Feist_11661,pool1,JM-Metabolic__GN02590 +1,JM-Metabolic__GN02657,JM-Metabolic.GN02657,Feist_11661_P42_diluted,H17,iTru7_305_02,GGCTATTG,iTru5_108_F,GAGGCATT,Feist_11661,pool2,JM-Metabolic__GN02657 +1,JM-Metabolic__GN02748,JM-Metabolic.GN02748,Feist_11661_P42,J17,iTru7_305_03,AGTTACGG,iTru5_109_F,GCTAAGGA,Feist_11661,pool1,JM-Metabolic__GN02748 +1,JM-Metabolic__GN02766,JM-Metabolic.GN02766,Feist_11661_P42_diluted,L17,iTru7_305_04,CGTACGAA,iTru5_110_F,GCCAGAAT,Feist_11661,pool2,JM-Metabolic__GN02766 +1,JM-Metabolic__GN02769,JM-Metabolic.GN02769,Feist_11661_P42_diluted,N17,iTru7_305_05,ACCACGAT,iTru5_111_F,TAAGTGGC,Feist_11661,pool1,JM-Metabolic__GN02769 +1,JM-Metabolic__GN02787,JM-Metabolic.GN02787,Feist_11661_P42_diluted,P17,iTru7_305_06,GATTACCG,iTru5_112_F,GCAATGAG,Feist_11661,pool2,JM-Metabolic__GN02787 +1,JM-Metabolic__GN03132,JM-Metabolic.GN03132,Feist_11661_P42,B19,iTru7_305_07,GAGATACG,iTru5_101_G,AACTGAGG,Feist_11661,pool1,JM-Metabolic__GN03132 +1,JM-Metabolic__GN03218,JM-Metabolic.GN03218,Feist_11661_P42_diluted,D19,iTru7_305_08,CGACGTTA,iTru5_102_G,AAGGAAGG,Feist_11661,pool2,JM-Metabolic__GN03218 +1,JM-Metabolic__GN03252,JM-Metabolic.GN03252,Feist_11661_P42_diluted,F19,iTru7_305_09,GAGATGTC,iTru5_103_G,AATGGTCG,Feist_11661,pool1,JM-Metabolic__GN03252 +1,JM-Metabolic__GN03409,JM-Metabolic.GN03409,Feist_11661_P42_diluted,H19,iTru7_305_10,GATTGGAG,iTru5_104_G,ACAGCAAG,Feist_11661,pool2,JM-Metabolic__GN03409 +1,JM-Metabolic__GN04014,JM-Metabolic.GN04014,Feist_11661_P42_diluted,J19,iTru7_305_11,GCAATTCG,iTru5_105_G,ACGTATGG,Feist_11661,pool1,JM-Metabolic__GN04014 +1,JM-Metabolic__GN04094,JM-Metabolic.GN04094,Feist_11661_P42_diluted,L19,iTru7_305_12,CGTCAATG,iTru5_106_G,ACTGCACT,Feist_11661,pool2,JM-Metabolic__GN04094 +1,JM-Metabolic__GN04255,JM-Metabolic.GN04255,Feist_11661_P42_diluted,N19,iTru7_401_01,ATGCACGA,iTru5_107_G,AGAGTCCA,Feist_11661,pool1,JM-Metabolic__GN04255 +1,JM-Metabolic__GN04306,JM-Metabolic.GN04306,Feist_11661_P42_diluted,P19,iTru7_401_02,ATCGCCAT,iTru5_108_G,AGCCTATC,Feist_11661,pool2,JM-Metabolic__GN04306 +1,JM-Metabolic__GN04428,JM-Metabolic.GN04428,Feist_11661_P42_diluted,B21,iTru7_401_03,TCTCGCAA,iTru5_109_G,AGGAACAC,Feist_11661,pool1,JM-Metabolic__GN04428 +1,JM-Metabolic__GN04488,JM-Metabolic.GN04488,Feist_11661_P42_diluted,D21,iTru7_401_04,ACGACAGA,iTru5_110_G,AGGTCTGT,Feist_11661,pool2,JM-Metabolic__GN04488 +1,JM-Metabolic__GN04540,JM-Metabolic.GN04540,Feist_11661_P42_diluted,F21,iTru7_401_05,TTACGGCT,iTru5_111_G,AGTATGCC,Feist_11661,pool1,JM-Metabolic__GN04540 +1,JM-Metabolic__GN04563,JM-Metabolic.GN04563,Feist_11661_P42_diluted,H21,iTru7_401_06,GAGGACTT,iTru5_112_G,AGTTCGCA,Feist_11661,pool2,JM-Metabolic__GN04563 +1,JM-Metabolic__GN04612,JM-Metabolic.GN04612,Feist_11661_P42_diluted,J21,iTru7_401_07,GGCATACT,iTru5_101_H,TGGAAGCA,Feist_11661,pool1,JM-Metabolic__GN04612 +1,JM-Metabolic__GN04665,JM-Metabolic.GN04665,Feist_11661_P42_diluted,L21,iTru7_401_08,CGTAGGTT,iTru5_102_H,GTCAGTCA,Feist_11661,pool2,JM-Metabolic__GN04665 +1,JM-Metabolic__GN04682,JM-Metabolic.GN04682,Feist_11661_P42_diluted,N21,iTru7_401_09,ATATGCGC,iTru5_103_H,GTAACCGA,Feist_11661,pool1,JM-Metabolic__GN04682 +1,JM-Metabolic__GN05002,JM-Metabolic.GN05002,Feist_11661_P42_diluted,P21,iTru7_401_10,GGATGTAG,iTru5_104_H,GTTATGGC,Feist_11661,pool2,JM-Metabolic__GN05002 +1,JM-Metabolic__GN05109,JM-Metabolic.GN05109,Feist_11661_P42_diluted,B23,iTru7_401_11,CCTGTCAT,iTru5_105_H,GTAAGCAC,Feist_11661,pool1,JM-Metabolic__GN05109 +1,JM-Metabolic__GN05128,JM-Metabolic.GN05128,Feist_11661_P42_diluted,D23,iTru7_401_12,TGCTCATG,iTru5_106_H,GGAATGTC,Feist_11661,pool2,JM-Metabolic__GN05128 +1,JM-Metabolic__GN05367,JM-Metabolic.GN05367,Feist_11661_P42_diluted,F23,iTru7_402_01,TGAAGACG,iTru5_107_H,GAGAAGGT,Feist_11661,pool1,JM-Metabolic__GN05367 +1,JM-Metabolic__GN05377,JM-Metabolic.GN05377,Feist_11661_P42_diluted,H23,iTru7_402_02,GTTACGCA,iTru5_108_H,GAGTAGAG,Feist_11661,pool2,JM-Metabolic__GN05377 +1,7A,7A,Gerwick_tubes,J23,iTru7_402_03,ACTCAGAC,iTru5_109_H,GCATTGGT,Gerwick_6123,pool1,7A +1,8A,8A,Gerwick_tubes,L23,iTru7_402_04,GTCCACAT,iTru5_110_H,TCCAGCAA,Gerwick_6123,pool2,8A +1,BLANK_42_12G,BLANK.42.12G,Feist_11661_P42,N23,iTru7_402_05,CGCTAGTA,iTru5_111_H,GAATCCGT,Feist_11661,pool1,BLANK.42.12G +1,BLANK_42_12H,BLANK.42.12H,Feist_11661_P42,P23,iTru7_402_06,GAATCCGA,iTru5_112_H,TACATCGG,Feist_11661,pool2,BLANK.42.12H +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0326,Feist_11661_P43,B2,iTru7_402_07,GAGACGAT,iTru5_113_A,ATAACGCC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0326 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0327,Feist_11661_P43,D2,iTru7_402_08,TAAGTGGC,iTru5_114_A,ATGACAGG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0327 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0328,Feist_11661_P43,F2,iTru7_402_09,ACTGAGGT,iTru5_115_A,CAACACAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0328 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0329,Feist_11661_P43,H2,iTru7_402_10,TGTACCGT,iTru5_116_A,CACCAGTT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0329 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0330,Feist_11661_P43,J2,iTru7_402_11,AGCAAGCA,iTru5_117_A,CAGAGTGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0330 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0352,Feist_11661_P43,L2,iTru7_402_12,TCTCGTGT,iTru5_118_A,CCGATGTA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0352 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0353,Feist_11661_P43,N2,iTru7_115_01,CAAGGTCT,iTru5_119_A,CCTTCCAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0353 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0354,Feist_11661_P43,P2,iTru7_115_02,TAGACGTG,iTru5_120_A,CGGTAATC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0354 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0355,Feist_11661_P43,B4,iTru7_115_03,TGAGCTAG,iTru5_121_A,CTAGGTTG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0355 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0356,Feist_11661_P43,D4,iTru7_115_04,CTGACACA,iTru5_122_A,CTCGGTAA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0356 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0357,Feist_11661_P43,F4,iTru7_115_05,ACGGTCTT,iTru5_123_A,CTGTGGTA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0357 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0364,Feist_11661_P43,H4,iTru7_115_06,GCTGTTGT,iTru5_124_A,GTACGATC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0364 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0366,Feist_11661_P43,J4,iTru7_115_07,CACTAGCT,iTru5_113_B,TCTGTCGT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0366 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0367,Feist_11661_P43,L4,iTru7_115_08,TGGTACAG,iTru5_114_B,GAATGGCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0367 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0368,Feist_11661_P43,N4,iTru7_115_09,AGCACTTC,iTru5_115_B,GTGTGTTC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0368 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0369,Feist_11661_P43,P4,iTru7_115_10,GCATACAG,iTru5_116_B,GGTTGAAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0369 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0370,Feist_11661_P43,B6,iTru7_115_11,CTTAGGAC,iTru5_117_B,GGCTCAAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0370 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0371,Feist_11661_P43,D6,iTru7_211_01,GCTTCTTG,iTru5_118_B,TTCGCCAT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0371 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0372,Feist_11661_P43,F6,iTru7_101_01,ACGTTACC,iTru5_119_B,GTCCTTGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0372 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0373,Feist_11661_P43,H6,iTru7_101_02,CTGTGTTG,iTru5_120_B,TAACGTCG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0373 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0374,Feist_11661_P43,J6,iTru7_101_03,TGAGGTGT,iTru5_121_B,GAGACCAA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0374 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0375,Feist_11661_P43,L6,iTru7_101_04,GATCCATG,iTru5_122_B,GATCAAGG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0375 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0376,Feist_11661_P43,N6,iTru7_101_05,GCCTATCA,iTru5_123_B,GCAACCAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0376 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0377,Feist_11661_P43,P6,iTru7_101_06,AACAACCG,iTru5_124_B,AAGGAGAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0377 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0378,Feist_11661_P43,B8,iTru7_101_07,ACTCGTTG,iTru5_113_C,ATCGGAGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0378 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0380,Feist_11661_P43,D8,iTru7_101_08,CCTATGGT,iTru5_114_C,ATGCGCTT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0380 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0381,Feist_11661_P43,F8,iTru7_101_09,TGTACACC,iTru5_115_C,CAACCGTA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0381 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0382,Feist_11661_P43,H8,iTru7_101_10,GTATGCTG,iTru5_116_C,CACTTCAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0382 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0383,Feist_11661_P43,J8,iTru7_101_11,TGATGTCC,iTru5_117_C,CAGCTAGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0383 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0384,Feist_11661_P43,L8,iTru7_101_12,GTCCTTCT,iTru5_118_C,CCGTTATG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0384 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0385,Feist_11661_P43,N8,iTru7_102_01,ATAAGGCG,iTru5_119_C,CGAACAAC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0385 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0386,Feist_11661_P43,P8,iTru7_102_02,CTTACCTG,iTru5_120_C,CGTAGATG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0386 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0387,Feist_11661_P43,B10,iTru7_102_03,CGTTGCAA,iTru5_121_C,CTATGCCT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0387 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0388,Feist_11661_P43,D10,iTru7_102_04,GATTCAGC,iTru5_122_C,CTGATGAG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0388 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0389,Feist_11661_P43,F10,iTru7_102_05,TCACGTTC,iTru5_123_C,CTTCCTTC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0389 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0390,Feist_11661_P43,H10,iTru7_102_06,TGTGCGTT,iTru5_124_C,GTCTCATC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0390 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0391,Feist_11661_P43,J10,iTru7_102_07,TAGTTGCG,iTru5_113_D,GCGCATAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0391 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0392,Feist_11661_P43,L10,iTru7_102_08,AAGAGCCA,iTru5_114_D,GAAGATCC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0392 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0393,Feist_11661_P43,N10,iTru7_102_09,ACAGCTCA,iTru5_115_D,GTTGGCAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0393 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0394,Feist_11661_P43,P10,iTru7_102_10,GTTAAGGC,iTru5_116_D,GTGAATGG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0394 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0395,Feist_11661_P43,B12,iTru7_102_11,AAGCCACA,iTru5_117_D,GTATCGAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0395 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0396,Feist_11661_P43,D12,iTru7_102_12,ACACGGTT,iTru5_118_D,TGCAAGAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0396 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0397,Feist_11661_P43,F12,iTru7_103_01,CAGCGATT,iTru5_119_D,GAGTGTGT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0397 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0398,Feist_11661_P43,H12,iTru7_103_02,TAGTGACC,iTru5_120_D,TAAGCGCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0398 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0399,Feist_11661_P43,J12,iTru7_103_03,CGAGACTA,iTru5_121_D,TAGCAGGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0399 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0400,Feist_11661_P43,L12,iTru7_103_04,GACATGGT,iTru5_122_D,GACTACGA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0400 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0401,Feist_11661_P43,N12,iTru7_103_05,GCATGTCT,iTru5_123_D,GACGTCAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0401 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0402,Feist_11661_P43,P12,iTru7_103_06,ACTCCATC,iTru5_124_D,AAGAGGCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0402 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0403,Feist_11661_P43,B14,iTru7_103_07,TGTGACTG,iTru5_113_E,ATCGTCTC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0403 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0404,Feist_11661_P43,D14,iTru7_103_08,CGAAGAAC,iTru5_114_E,ATGGCGAT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0404 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0405,Feist_11661_P43,F14,iTru7_103_09,GGTGTCTT,iTru5_115_E,CAAGAAGC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0405 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0406,Feist_11661_P43,H14,iTru7_103_10,AAGAAGGC,iTru5_116_E,CAGAACTG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0406 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0407,Feist_11661_P43,J14,iTru7_103_11,AGGTTCGA,iTru5_117_E,CAGGTAAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0407 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0408,Feist_11661_P43,L14,iTru7_103_12,CATGTTCC,iTru5_118_E,CCTACCTA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0408 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0409,Feist_11661_P43,N14,iTru7_104_01,GTGCCATA,iTru5_119_E,CGAAGTCA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0409 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0417,Feist_11661_P43,P14,iTru7_104_02,CCTTGTAG,iTru5_120_E,CGTCTTCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0417 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0418,Feist_11661_P43,B16,iTru7_104_03,GCTGGATT,iTru5_121_E,CTCAAGCT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0418 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0419,Feist_11661_P43,D16,iTru7_104_04,TAACGAGG,iTru5_122_E,CTGCCATA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0419 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0420,Feist_11661_P43,F16,iTru7_104_05,ATGGTTGC,iTru5_123_E,CTTGCTAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0420 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0421,Feist_11661_P43,H16,iTru7_104_06,CCTATACC,iTru5_124_E,GTCTGCAA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0421 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0473,Feist_11661_P43,J16,iTru7_104_07,TTAGGTCG,iTru5_113_F,GCTACTCT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0473 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0474,Feist_11661_P43,L16,iTru7_104_08,GCAAGATC,iTru5_114_F,TACAGAGC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0474 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0483,Feist_11661_P43,N16,iTru7_104_09,AGAGCCTT,iTru5_115_F,GGTCGTAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0483 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0484,Feist_11661_P43,P16,iTru7_104_10,GCAATGGA,iTru5_116_F,GTCGTTAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0484 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0485,Feist_11661_P43,B18,iTru7_104_11,CTGGAGTA,iTru5_117_F,TTCACGGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0485 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0486,Feist_11661_P43,D18,iTru7_104_12,GAACATCG,iTru5_118_F,TGCTTGCT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0486 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0516,Feist_11661_P43,F18,iTru7_105_01,GCACAACT,iTru5_119_F,TCTTACGG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0516 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0517,Feist_11661_P43,H18,iTru7_105_02,TTCTCTCG,iTru5_120_F,TCCTCATG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0517 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0518,Feist_11661_P43,J18,iTru7_105_03,AACGGTCA,iTru5_121_F,GATGTCGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0518 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0519,Feist_11661_P43,L18,iTru7_105_04,ACAGACCT,iTru5_122_F,GAAGTGCT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0519 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0520,Feist_11661_P43,N18,iTru7_105_05,TCTCTTCC,iTru5_123_F,TCACTCGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0520 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0521,Feist_11661_P43,P18,iTru7_105_06,AGTGTTGG,iTru5_124_F,ACGCAGTA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0521 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0522,Feist_11661_P43,B20,iTru7_105_07,TGGCATGT,iTru5_113_G,ATCTCCTG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0522 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0523,Feist_11661_P43,D20,iTru7_105_08,AGAAGCGT,iTru5_114_G,ATGTGGAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0523 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0524,Feist_11661_P43,F20,iTru7_105_09,AGCGGAAT,iTru5_115_G,CAAGCCAA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0524 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0525,Feist_11661_P43,H20,iTru7_105_10,TAACCGGT,iTru5_116_G,CAGACGTT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0525 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624,JM-MEC.Staphylococcus.aureusstrain.BERTI-R08624,Feist_11661_P43,J20,iTru7_105_11,CATGGAAC,iTru5_117_G,CATACTCG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R08624 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704,JM-MEC.Staphylococcus.aureusstrain.BERTI-R08704,Feist_11661_P43,L20,iTru7_105_12,ATGGTCCA,iTru5_118_G,CCTGTCAA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R08704 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727,JM-MEC.Staphylococcus.aureusstrain.BERTI-R10727,Feist_11661_P43,N20,iTru7_106_01,CTTCTGAG,iTru5_119_G,CGAGTTAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R10727 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11044,Feist_11661_P43,P20,iTru7_106_02,AACCGAAG,iTru5_120_G,CTAACCTG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R11044 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11078,Feist_11661_P43,B22,iTru7_106_03,TTCGTACC,iTru5_121_G,CTCCTAGT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R11078 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11101,Feist_11661_P43,D22,iTru7_106_04,CTGTTAGG,iTru5_122_G,CTGTACCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R11101 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11102,Feist_11661_P43,F22,iTru7_106_05,CACAAGTC,iTru5_123_G,GCTACAAC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R11102 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11103,Feist_11661_P43,H22,iTru7_106_06,TCTTGACG,iTru5_124_G,GTTCTTCG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R11103 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11135,Feist_11661_P43,J22,iTru7_106_07,CGTCTTGT,iTru5_113_H,GAGAGTAC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R11135 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11153,Feist_11661_P43,L22,iTru7_106_08,CGTGATCA,iTru5_114_H,GACACAGT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R11153 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11154,Feist_11661_P43,N22,iTru7_106_09,CCAAGTTG,iTru5_115_H,TTGCTTGG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R11154 +1,JM-Metabolic__GN02424,JM-Metabolic.GN02424,Feist_11661_P43,P22,iTru7_106_10,GTACCTTG,iTru5_116_H,GTAGTACC,Feist_11661,pool2,JM-Metabolic__GN02424 +1,JM-Metabolic__GN02446,JM-Metabolic.GN02446,Feist_11661_P43,B24,iTru7_106_11,GACTATGC,iTru5_117_H,TTCGGCTA,Feist_11661,pool1,JM-Metabolic__GN02446 +1,JM-Metabolic__GN02449,JM-Metabolic.GN02449,Feist_11661_P43,D24,iTru7_106_12,TGGATCAC,iTru5_118_H,TGCACTTG,Feist_11661,pool2,JM-Metabolic__GN02449 +1,JM-Metabolic__GN02487,JM-Metabolic.GN02487,Feist_11661_P43_diluted,F24,iTru7_107_01,CTCTGGTT,iTru5_119_H,TAGAACGC,Feist_11661,pool1,JM-Metabolic__GN02487 +1,JM-Metabolic__GN02501,JM-Metabolic.GN02501,Feist_11661_P43,H24,iTru7_107_02,GTTCATGG,iTru5_120_H,GATTGTCC,Feist_11661,pool2,JM-Metabolic__GN02501 +1,ISB,ISB,Gerwick_tubes,J24,iTru7_107_03,GCTGTAAG,iTru5_121_H,GATGCTAC,Gerwick_6123,pool1,ISB +1,GFR,GFR,Gerwick_tubes,L24,iTru7_107_04,GTCGAAGA,iTru5_122_H,GAACGGTT,Gerwick_6123,pool2,GFR +1,BLANK_43_12G,BLANK.43.12G,Feist_11661_P43,N24,iTru7_107_05,GAGCTCAA,iTru5_123_H,CTCTTGTC,Feist_11661,pool1,BLANK.43.12G +1,BLANK_43_12H,BLANK.43.12H,Feist_11661_P43,P24,iTru7_107_06,TGAACCTG,iTru5_124_H,AACGCCTT,Feist_11661,pool2,BLANK.43.12H +1,RMA_KHP_rpoS_Mage_Q97D,RMA.KHP.rpoS.Mage.Q97D,,,12,CTTGTAAT,U1,TATAGCGT,Feist_11661,pool1,RMA_KHP_rpoS Mage Q97D +1,RMA_KHP_rpoS_Mage_Q97L,RMA.KHP.rpoS.Mage.Q97L,,,13,AGTCAAAT,U1,TATAGCGT,Feist_11661,pool2,RMA_KHP_rpoS Mage Q97L +1,RMA_KHP_rpoS_Mage_Q97N,RMA.KHP.rpoS.Mage.Q97N,,,14,AGTTCCAT,U1,TATAGCGT,Feist_11661,pool1,RMA_KHP_rpoS Mage Q97N +1,RMA_KHP_rpoS_Mage_Q97E,RMA.KHP.rpoS.Mage.Q97E,,,15,ATGTCAAT,U1,TATAGCGT,Feist_11661,pool2,RMA_KHP_rpoS Mage Q97E +1,JBI_KHP_HGL_021,JBI.KHP.HGL.021,,,1,ATCACGAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_021 +1,JBI_KHP_HGL_022,JBI.KHP.HGL.022,,,2,CGATGTAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_022 +1,JBI_KHP_HGL_023,JBI.KHP.HGL.023,,,3,TTAGGCAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_023 +1,JBI_KHP_HGL_024,JBI.KHP.HGL.024,,,4,TGACCAAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_024 +1,JBI_KHP_HGL_025,JBI.KHP.HGL.025,,,5,ACAGTGAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_025 +1,JBI_KHP_HGL_026,JBI.KHP.HGL.026,,,6,GCCAATAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_026 +1,JBI_KHP_HGL_027,JBI.KHP.HGL.027,,,7,CAGATCAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_027 +1,JBI_KHP_HGL_028_Amitesh_soxR,JBI.KHP.HGL.028.Amitesh.soxR,,,8,ACTTGAAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_028_Amitesh_soxR +1,JBI_KHP_HGL_029_Amitesh_oxyR,JBI.KHP.HGL.029.Amitesh.oxyR,,,9,GATCAGAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_029_Amitesh_oxyR +1,JBI_KHP_HGL_030_Amitesh_soxR_oxyR,JBI.KHP.HGL.030.Amitesh.soxR.oxyR,,,10,TAGCTTAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_030_Amitesh_soxR_oxyR +1,JBI_KHP_HGL_031_Amitesh_rpoS,JBI.KHP.HGL.031.Amitesh.rpoS,,,11,GGCTACAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_031_Amitesh_rpoS +1,BLANK1_1A,BLANK1.1A,NYU_BMS_Melanoma_13059_P1,A1,iTru7_107_09,GCCTTGTT,iTru5_01_A,ACCGACAA,NYU_BMS_Melanoma_13059,pool2,BLANK1.1A +1,BLANK1_1B,BLANK1.1B,NYU_BMS_Melanoma_13059_P1,C1,iTru7_107_10,AACTTGCC,iTru5_02_A,CTTCGCAA,NYU_BMS_Melanoma_13059,pool1,BLANK1.1B +1,BLANK1_1C,BLANK1.1C,NYU_BMS_Melanoma_13059_P1,E1,iTru7_107_11,CAATGTGG,iTru5_03_A,AACACCAC,NYU_BMS_Melanoma_13059,pool2,BLANK1.1C +1,BLANK1_1D,BLANK1.1D,NYU_BMS_Melanoma_13059_P1,G1,iTru7_107_12,AAGGCTGA,iTru5_04_A,CGTATCTC,NYU_BMS_Melanoma_13059,pool1,BLANK1.1D +1,BLANK1_1E,BLANK1.1E,NYU_BMS_Melanoma_13059_P1,I1,iTru7_108_01,TTACCGAG,iTru5_05_A,GGTACGAA,NYU_BMS_Melanoma_13059,pool2,BLANK1.1E +1,BLANK1_1F,BLANK1.1F,NYU_BMS_Melanoma_13059_P1,K1,iTru7_108_02,GTCCTAAG,iTru5_06_A,CGATCGAT,NYU_BMS_Melanoma_13059,pool1,BLANK1.1F +1,BLANK1_1G,BLANK1.1G,NYU_BMS_Melanoma_13059_P1,M1,iTru7_108_03,GAAGGTTC,iTru5_07_A,AAGACACC,NYU_BMS_Melanoma_13059,pool2,BLANK1.1G +1,BLANK1_1H,BLANK1.1H,NYU_BMS_Melanoma_13059_P1,O1,iTru7_108_04,GAAGAGGT,iTru5_08_A,CATCTGCT,NYU_BMS_Melanoma_13059,pool1,BLANK1.1H +1,AP581451B02,AP581451B02,NYU_BMS_Melanoma_13059_P1,A3,iTru7_108_05,TCTGAGAG,iTru5_09_A,CTCTCAGA,NYU_BMS_Melanoma_13059,pool2,AP581451B02 +1,EP256645B01,EP256645B01,NYU_BMS_Melanoma_13059_P1,C3,iTru7_108_06,ACCGCATA,iTru5_10_A,TCGTCTGA,NYU_BMS_Melanoma_13059,pool1,EP256645B01 +1,EP112567B02,EP112567B02,NYU_BMS_Melanoma_13059_P1,E3,iTru7_108_07,GAAGTACC,iTru5_11_A,CAATAGCC,NYU_BMS_Melanoma_13059,pool2,EP112567B02 +1,EP337425B01,EP337425B01,NYU_BMS_Melanoma_13059_P1,G3,iTru7_108_08,CAGGTATC,iTru5_12_A,CATTCGTC,NYU_BMS_Melanoma_13059,pool1,EP337425B01 +1,LP127890A01,LP127890A01,NYU_BMS_Melanoma_13059_P1,I3,iTru7_108_09,TCTCTAGG,iTru5_01_B,AGTGGCAA,NYU_BMS_Melanoma_13059,pool2,LP127890A01 +1,EP159692B04,EP159692B04,NYU_BMS_Melanoma_13059_P1,K3,iTru7_108_10,AAGCACTG,iTru5_02_B,GTGGTATG,NYU_BMS_Melanoma_13059,pool1,EP159692B04 +1,EP987683A01,EP987683A01,NYU_BMS_Melanoma_13059_P1,M3,iTru7_108_11,CCAAGCAA,iTru5_03_B,TGAGCTGT,NYU_BMS_Melanoma_13059,pool2,EP987683A01 +1,AP959450A03,AP959450A03,NYU_BMS_Melanoma_13059_P1,O3,iTru7_108_12,TGTTCGAG,iTru5_04_B,CGTCAAGA,NYU_BMS_Melanoma_13059,pool1,AP959450A03 +1,SP464350A04,SP464350A04,NYU_BMS_Melanoma_13059_P1,A5,iTru7_109_01,CTCGTCTT,iTru5_05_B,AAGCATCG,NYU_BMS_Melanoma_13059,pool2,SP464350A04 +1,C9,C9,NYU_BMS_Melanoma_13059_P1,C5,iTru7_109_02,CGAACTGT,iTru5_06_B,TACTCCAG,NYU_BMS_Melanoma_13059,pool1,C9 +1,ep256643b01,ep256643b01,NYU_BMS_Melanoma_13059_P1,E5,iTru7_109_03,CATTCGGT,iTru5_07_B,GATACCTG,NYU_BMS_Melanoma_13059,pool2,ep256643b01 +1,EP121011B01,EP121011B01,NYU_BMS_Melanoma_13059_P1,G5,iTru7_109_04,TCGGTTAC,iTru5_08_B,ACCTCTTC,NYU_BMS_Melanoma_13059,pool1,EP121011B01 +1,AP616837B04,AP616837B04,NYU_BMS_Melanoma_13059_P1,I5,iTru7_109_05,AAGTCGAG,iTru5_09_B,ACGGACTT,NYU_BMS_Melanoma_13059,pool2,AP616837B04 +1,SP506933A04,SP506933A04,NYU_BMS_Melanoma_13059_P1,K5,iTru7_109_06,TATCGGTC,iTru5_10_B,CATGTGTG,NYU_BMS_Melanoma_13059,pool1,SP506933A04 +1,EP159695B01,EP159695B01,NYU_BMS_Melanoma_13059_P1,M5,iTru7_109_07,TATTCGCC,iTru5_11_B,TGCCTCAA,NYU_BMS_Melanoma_13059,pool2,EP159695B01 +1,EP256644B01,EP256644B01,NYU_BMS_Melanoma_13059_P1,O5,iTru7_109_08,GTATTGGC,iTru5_12_B,ATCTGACC,NYU_BMS_Melanoma_13059,pool1,EP256644B01 +1,SP511289A02,SP511289A02,NYU_BMS_Melanoma_13059_P1,A7,iTru7_109_09,AGTCGCTT,iTru5_01_C,CACAGACT,NYU_BMS_Melanoma_13059,pool2,SP511289A02 +1,EP305735B04,EP305735B04,NYU_BMS_Melanoma_13059_P1,C7,iTru7_109_10,TGGCACTA,iTru5_02_C,CACTGTAG,NYU_BMS_Melanoma_13059,pool1,EP305735B04 +1,SP415030A01,SP415030A01,NYU_BMS_Melanoma_13059_P1,E7,iTru7_109_11,GGTTGTCA,iTru5_03_C,CACAGGAA,NYU_BMS_Melanoma_13059,pool2,SP415030A01 +1,AP549681B02,AP549681B02,NYU_BMS_Melanoma_13059_P1,G7,iTru7_109_12,AACCTCCT,iTru5_04_C,CCATGAAC,NYU_BMS_Melanoma_13059,pool1,AP549681B02 +1,AP549678B01,AP549678B01,NYU_BMS_Melanoma_13059_P1,I7,iTru7_110_01,ATGACCAG,iTru5_05_C,GCCAATAC,NYU_BMS_Melanoma_13059,pool2,AP549678B01 +1,EP260544B04,EP260544B04,NYU_BMS_Melanoma_13059_P1,K7,iTru7_110_02,AACCGTTC,iTru5_06_C,AGCTACCA,NYU_BMS_Melanoma_13059,pool1,EP260544B04 +1,EP202452B01,EP202452B01,NYU_BMS_Melanoma_13059_P1,M7,iTru7_110_03,TCCAATCG,iTru5_07_C,AACCGAAC,NYU_BMS_Melanoma_13059,pool2,EP202452B01 +1,EP282276B04,EP282276B04,NYU_BMS_Melanoma_13059_P1,O7,iTru7_110_04,CTGCACTT,iTru5_08_C,ATCGCAAC,NYU_BMS_Melanoma_13059,pool1,EP282276B04 +1,SP531696A04,SP531696A04,NYU_BMS_Melanoma_13059_P1,A9,iTru7_110_05,CGCTTAAC,iTru5_09_C,GTTGCTGT,NYU_BMS_Melanoma_13059,pool2,SP531696A04 +1,SP515443A04,SP515443A04,NYU_BMS_Melanoma_13059_P1,C9,iTru7_110_06,CACCACTA,iTru5_10_C,TCTAGTCC,NYU_BMS_Melanoma_13059,pool1,SP515443A04 +1,SP515763A04,SP515763A04,NYU_BMS_Melanoma_13059_P1,E9,iTru7_110_07,ACAGCAAC,iTru5_11_C,GACGAACT,NYU_BMS_Melanoma_13059,pool2,SP515763A04 +1,EP184255B04,EP184255B04,NYU_BMS_Melanoma_13059_P1,G9,iTru7_110_08,GGAAGGAT,iTru5_12_C,TTCGTACG,NYU_BMS_Melanoma_13059,pool1,EP184255B04 +1,SP503615A02,SP503615A02,NYU_BMS_Melanoma_13059_P1,I9,iTru7_110_09,GGCGTTAT,iTru5_01_D,CGACACTT,NYU_BMS_Melanoma_13059,pool2,SP503615A02 +1,EP260543B04,EP260543B04,NYU_BMS_Melanoma_13059_P1,K9,iTru7_110_10,CTGTTGAC,iTru5_02_D,AGACGCTA,NYU_BMS_Melanoma_13059,pool1,EP260543B04 +1,EP768748A04,EP768748A04,NYU_BMS_Melanoma_13059_P1,M9,iTru7_110_11,GTCATCGA,iTru5_03_D,TGACAACC,NYU_BMS_Melanoma_13059,pool2,EP768748A04 +1,AP309872B03,AP309872B03,NYU_BMS_Melanoma_13059_P1,O9,iTru7_110_12,TGACTTCG,iTru5_04_D,GGTACTTC,NYU_BMS_Melanoma_13059,pool1,AP309872B03 +1,AP568785B04,AP568785B04,NYU_BMS_Melanoma_13059_P1,A11,iTru7_111_01,CGATAGAG,iTru5_05_D,CTGTATGC,NYU_BMS_Melanoma_13059,pool2,AP568785B04 +1,EP721390A04,EP721390A04,NYU_BMS_Melanoma_13059_P1,C11,iTru7_111_02,TTCGTTGG,iTru5_06_D,TCGACAAG,NYU_BMS_Melanoma_13059,pool1,EP721390A04 +1,EP940013A01,EP940013A01,NYU_BMS_Melanoma_13059_P1,E11,iTru7_111_03,TGGAGAGT,iTru5_07_D,GCTGAATC,NYU_BMS_Melanoma_13059,pool2,EP940013A01 +1,EP291979B04,EP291979B04,NYU_BMS_Melanoma_13059_P1,G11,iTru7_111_04,TCAGACGA,iTru5_08_D,AGTTGTGC,NYU_BMS_Melanoma_13059,pool1,EP291979B04 +1,EP182065B04,EP182065B04,NYU_BMS_Melanoma_13059_P1,I11,iTru7_111_05,GACGAATG,iTru5_09_D,TGTCGACT,NYU_BMS_Melanoma_13059,pool2,EP182065B04 +1,EP128904B02,EP128904B02,NYU_BMS_Melanoma_13059_P1,K11,iTru7_111_06,CATGAGGA,iTru5_10_D,AAGGCTCT,NYU_BMS_Melanoma_13059,pool1,EP128904B02 +1,EP915769A04,EP915769A04,NYU_BMS_Melanoma_13059_P1,M11,iTru7_111_07,CGGTTGTT,iTru5_11_D,CCTAACAG,NYU_BMS_Melanoma_13059,pool2,EP915769A04 +1,SP464352A03,SP464352A03,NYU_BMS_Melanoma_13059_P1,O11,iTru7_111_08,TCCGTATG,iTru5_12_D,AAGACGAG,NYU_BMS_Melanoma_13059,pool1,SP464352A03 +1,SP365864A04,SP365864A04,NYU_BMS_Melanoma_13059_P1,A13,iTru7_111_09,TGTGGTAC,iTru5_01_E,GACTTGTG,NYU_BMS_Melanoma_13059,pool2,SP365864A04 +1,SP511294A04,SP511294A04,NYU_BMS_Melanoma_13059_P1,C13,iTru7_111_10,AGAACGAG,iTru5_02_E,CAACTCCA,NYU_BMS_Melanoma_13059,pool1,SP511294A04 +1,EP061002B01,EP061002B01,NYU_BMS_Melanoma_13059_P1,E13,iTru7_111_11,CTTCGTTC,iTru5_03_E,TGTTCCGT,NYU_BMS_Melanoma_13059,pool2,EP061002B01 +1,SP410793A01,SP410793A01,NYU_BMS_Melanoma_13059_P1,G13,iTru7_111_12,CCAATAGG,iTru5_04_E,ACCGCTAT,NYU_BMS_Melanoma_13059,pool1,SP410793A01 +1,SP232077A04,SP232077A04,NYU_BMS_Melanoma_13059_P1,I13,iTru7_112_01,ACCATCCA,iTru5_05_E,CTTAGGAC,NYU_BMS_Melanoma_13059,pool2,SP232077A04 +1,EP128910B01,EP128910B01,NYU_BMS_Melanoma_13059_P1,K13,iTru7_112_02,CACACATG,iTru5_06_E,TATGACCG,NYU_BMS_Melanoma_13059,pool1,EP128910B01 +1,AP531397B04,AP531397B04,NYU_BMS_Melanoma_13059_P1,M13,iTru7_112_03,CTTGTCGA,iTru5_07_E,AGCTAGTG,NYU_BMS_Melanoma_13059,pool2,AP531397B04 +1,EP043583B01,EP043583B01,NYU_BMS_Melanoma_13059_P1,O13,iTru7_112_04,AGTCTCAC,iTru5_08_E,GAACGAAG,NYU_BMS_Melanoma_13059,pool1,EP043583B01 +1,EP230245B01,EP230245B01,NYU_BMS_Melanoma_13059_P1,A15,iTru7_112_05,AGTTGGCT,iTru5_09_E,CGTCTAAC,NYU_BMS_Melanoma_13059,pool2,EP230245B01 +1,EP606652B04,EP606652B04,NYU_BMS_Melanoma_13059_P1,C15,iTru7_112_06,CCGGAATT,iTru5_10_E,AACCAGAG,NYU_BMS_Melanoma_13059,pool1,EP606652B04 +1,EP207041B01,EP207041B01,NYU_BMS_Melanoma_13059_P1,E15,iTru7_112_07,CAGTGAAG,iTru5_11_E,CGCCTTAT,NYU_BMS_Melanoma_13059,pool2,EP207041B01 +1,EP727972A04,EP727972A04,NYU_BMS_Melanoma_13059_P1,G15,iTru7_112_08,CCTACTGA,iTru5_12_E,CTCGTTCT,NYU_BMS_Melanoma_13059,pool1,EP727972A04 +1,EP291980B04,EP291980B04,NYU_BMS_Melanoma_13059_P1,I15,iTru7_112_09,TGTGAAGC,iTru5_01_F,GTGAGACT,NYU_BMS_Melanoma_13059,pool2,EP291980B04 +1,EP087938B02,EP087938B02,NYU_BMS_Melanoma_13059_P1,K15,iTru7_112_10,GTCTGATC,iTru5_02_F,AACACGCT,NYU_BMS_Melanoma_13059,pool1,EP087938B02 +1,SP471496A04,SP471496A04,NYU_BMS_Melanoma_13059_P1,M15,iTru7_112_11,TTCAGGAG,iTru5_03_F,CCTAGAGA,NYU_BMS_Melanoma_13059,pool2,SP471496A04 +1,SP573823A04,SP573823A04,NYU_BMS_Melanoma_13059_P1,O15,iTru7_112_12,ACGATGAC,iTru5_04_F,TTCCAGGT,NYU_BMS_Melanoma_13059,pool1,SP573823A04 +1,EP393718B01,EP393718B01,NYU_BMS_Melanoma_13059_P1,A17,iTru7_113_01,CGTTATGC,iTru5_05_F,TCAGCCTT,NYU_BMS_Melanoma_13059,pool2,EP393718B01 +1,SP612496A01,SP612496A01,NYU_BMS_Melanoma_13059_P1,C17,iTru7_113_02,GATACTGG,iTru5_06_F,AGCCAACT,NYU_BMS_Melanoma_13059,pool1,SP612496A01 +1,EP032410B02,EP032410B02,NYU_BMS_Melanoma_13059_P1,E17,iTru7_113_03,CTACTTGG,iTru5_07_F,CTAGCTCA,NYU_BMS_Melanoma_13059,pool2,EP032410B02 +1,EP073216B01,EP073216B01,NYU_BMS_Melanoma_13059_P1,G17,iTru7_113_04,CATACCAC,iTru5_08_F,GGAAGAGA,NYU_BMS_Melanoma_13059,pool1,EP073216B01 +1,EP410046B01,EP410046B01,NYU_BMS_Melanoma_13059_P1,I17,iTru7_113_05,ACATTGCG,iTru5_09_F,AACACTGG,NYU_BMS_Melanoma_13059,pool2,EP410046B01 +1,SP561451A04,SP561451A04,NYU_BMS_Melanoma_13059_P1,K17,iTru7_113_06,TGATCGGA,iTru5_10_F,ACTATCGC,NYU_BMS_Melanoma_13059,pool1,SP561451A04 +1,EP320438B01,EP320438B01,NYU_BMS_Melanoma_13059_P1,M17,iTru7_113_07,AAGTGTCG,iTru5_11_F,ACAACAGC,NYU_BMS_Melanoma_13059,pool2,EP320438B01 +1,SP612495A04,SP612495A04,NYU_BMS_Melanoma_13059_P1,O17,iTru7_113_08,GAACGCTT,iTru5_12_F,TGTGGCTT,NYU_BMS_Melanoma_13059,pool1,SP612495A04 +1,EP446604B03,EP446604B03,NYU_BMS_Melanoma_13059_P1,A19,iTru7_113_09,TCAAGGAC,iTru5_01_G,GTTCCATG,NYU_BMS_Melanoma_13059,pool2,EP446604B03 +1,EP446602B01,EP446602B01,NYU_BMS_Melanoma_13059_P1,C19,iTru7_113_10,TCAACTGG,iTru5_02_G,TGGATGGT,NYU_BMS_Melanoma_13059,pool1,EP446602B01 +1,EP182243B02,EP182243B02,NYU_BMS_Melanoma_13059_P1,E19,iTru7_113_11,GGTTGATG,iTru5_03_G,GCATAACG,NYU_BMS_Melanoma_13059,pool2,EP182243B02 +1,EP333541B04,EP333541B04,NYU_BMS_Melanoma_13059_P1,G19,iTru7_113_12,AAGGACAC,iTru5_04_G,TCGAACCT,NYU_BMS_Melanoma_13059,pool1,EP333541B04 +1,EP238034B01,EP238034B01,NYU_BMS_Melanoma_13059_P1,I19,iTru7_114_01,TTGATCCG,iTru5_05_G,ACATGCCA,NYU_BMS_Melanoma_13059,pool2,EP238034B01 +1,AP298002B02,AP298002B02,NYU_BMS_Melanoma_13059_P1,K19,iTru7_114_02,GGTGATTC,iTru5_06_G,GATCTTGC,NYU_BMS_Melanoma_13059,pool1,AP298002B02 +1,EP455759B04,EP455759B04,NYU_BMS_Melanoma_13059_P1,M19,iTru7_114_03,GATTGCTC,iTru5_07_G,GTTAAGCG,NYU_BMS_Melanoma_13059,pool2,EP455759B04 +1,EP207042B04,EP207042B04,NYU_BMS_Melanoma_13059_P1,O19,iTru7_114_04,ACCTGGAA,iTru5_08_G,GTCATCGT,NYU_BMS_Melanoma_13059,pool1,EP207042B04 +1,LP128479A01,LP128479A01,NYU_BMS_Melanoma_13059_P1,A21,iTru7_114_05,CATCTACG,iTru5_09_G,TCAGACAC,NYU_BMS_Melanoma_13059,pool2,LP128479A01 +1,LP128476A01,LP128476A01,NYU_BMS_Melanoma_13059_P1,C21,iTru7_114_06,CCGTATCT,iTru5_10_G,GTCCTAAG,NYU_BMS_Melanoma_13059,pool1,LP128476A01 +1,EP316863B03,EP316863B03,NYU_BMS_Melanoma_13059_P1,E21,iTru7_114_07,CGGAATAC,iTru5_11_G,AGACCTTG,NYU_BMS_Melanoma_13059,pool2,EP316863B03 +1,C20,C20,NYU_BMS_Melanoma_13059_P1,G21,iTru7_114_08,CTCCTAGA,iTru5_12_G,AGACATGC,NYU_BMS_Melanoma_13059,pool1,C20 +1,lp127896a01,lp127896a01,NYU_BMS_Melanoma_13059_P1,I21,iTru7_114_09,TGGTAGCT,iTru5_01_H,TAGCTGAG,NYU_BMS_Melanoma_13059,pool2,lp127896a01 +1,SP491907A02,SP491907A02,NYU_BMS_Melanoma_13059_P1,K21,iTru7_114_10,TCGAAGGT,iTru5_02_H,TTCGAAGC,NYU_BMS_Melanoma_13059,pool1,SP491907A02 +1,EP182060B03,EP182060B03,NYU_BMS_Melanoma_13059_P1,M21,iTru7_114_11,ACATAGGC,iTru5_03_H,CAGTGCTT,NYU_BMS_Melanoma_13059,pool2,EP182060B03 +1,EP422407B01,EP422407B01,NYU_BMS_Melanoma_13059_P1,O21,iTru7_114_12,CTCAGAGT,iTru5_04_H,TAGTGCCA,NYU_BMS_Melanoma_13059,pool1,EP422407B01 +1,SP573859A04,SP573859A04,NYU_BMS_Melanoma_13059_P1,A23,iTru7_201_01,CTTGGATG,iTru5_05_H,GATGGAGT,NYU_BMS_Melanoma_13059,pool2,SP573859A04 +1,SP584547A02,SP584547A02,NYU_BMS_Melanoma_13059_P1,C23,iTru7_201_02,CAGTTGGA,iTru5_06_H,CCTCGTTA,NYU_BMS_Melanoma_13059,pool1,SP584547A02 +1,EP182346B04,EP182346B04,NYU_BMS_Melanoma_13059_P1,E23,iTru7_201_03,GATAGGCT,iTru5_07_H,CGATTGGA,NYU_BMS_Melanoma_13059,pool2,EP182346B04 +1,AP668631B04,AP668631B04,NYU_BMS_Melanoma_13059_P1,G23,iTru7_201_04,TTGACAGG,iTru5_08_H,CCAACGAA,NYU_BMS_Melanoma_13059,pool1,AP668631B04 +1,EP451428B04,EP451428B04,NYU_BMS_Melanoma_13059_P1,I23,iTru7_201_05,AGAATGCC,iTru5_09_H,AGAAGGAC,NYU_BMS_Melanoma_13059,pool2,EP451428B04 +1,LP128538A01,LP128538A01,NYU_BMS_Melanoma_13059_P1,K23,iTru7_201_06,CTACATCC,iTru5_10_H,TGACCGTT,NYU_BMS_Melanoma_13059,pool1,LP128538A01 +1,SP490298A02,SP490298A02,NYU_BMS_Melanoma_13059_P1,M23,iTru7_201_07,TCATGGTG,iTru5_11_H,GCGTTAGA,NYU_BMS_Melanoma_13059,pool2,SP490298A02 +1,SP573860A01,SP573860A01,NYU_BMS_Melanoma_13059_P1,O23,iTru7_201_08,TACACGCT,iTru5_12_H,TCTAGGAG,NYU_BMS_Melanoma_13059,pool1,SP573860A01 +1,EP032412B02,EP032412B02,NYU_BMS_Melanoma_13059_P2,A2,iTru7_201_09,TACGGTTG,iTru5_13_A,GGTATAGG,NYU_BMS_Melanoma_13059,pool2,EP032412B02 +1,EP163771B01,EP163771B01,NYU_BMS_Melanoma_13059_P2,C2,iTru7_201_10,GGATACCA,iTru5_14_A,TCCGATCA,NYU_BMS_Melanoma_13059,pool1,EP163771B01 +1,LP169879A01,LP169879A01,NYU_BMS_Melanoma_13059_P2,E2,iTru7_201_11,TCGACATC,iTru5_15_A,CGACCTAA,NYU_BMS_Melanoma_13059,pool2,LP169879A01 +1,EP729433A02,EP729433A02,NYU_BMS_Melanoma_13059_P2,G2,iTru7_201_12,GTTGTAGC,iTru5_16_A,GACATCTC,NYU_BMS_Melanoma_13059,pool1,EP729433A02 +1,EP447940B04,EP447940B04,NYU_BMS_Melanoma_13059_P2,I2,iTru7_202_01,ATACGACC,iTru5_17_A,CCAGTATC,NYU_BMS_Melanoma_13059,pool2,EP447940B04 +1,SP584551A08,SP584551A08,NYU_BMS_Melanoma_13059_P2,K2,iTru7_202_02,TTCCAAGG,iTru5_18_A,ACGCTTCT,NYU_BMS_Melanoma_13059,pool1,SP584551A08 +1,EP216516B04,EP216516B04,NYU_BMS_Melanoma_13059_P2,M2,iTru7_202_03,TTGCAGAC,iTru5_19_A,AACGCACA,NYU_BMS_Melanoma_13059,pool2,EP216516B04 +1,EP023808B02,EP023808B02,NYU_BMS_Melanoma_13059_P2,O2,iTru7_202_04,TGCCATTC,iTru5_20_A,TGATCACG,NYU_BMS_Melanoma_13059,pool1,EP023808B02 +1,BLANK2_2A,BLANK2.2A,NYU_BMS_Melanoma_13059_P2,A4,iTru7_202_05,GATGTGTG,iTru5_21_A,GCGTATCA,NYU_BMS_Melanoma_13059,pool2,BLANK2.2A +1,BLANK2_2B,BLANK2.2B,NYU_BMS_Melanoma_13059_P2,C4,iTru7_202_06,ACTCTCGA,iTru5_22_A,GTGTCCTT,NYU_BMS_Melanoma_13059,pool1,BLANK2.2B +1,BLANK2_2C,BLANK2.2C,NYU_BMS_Melanoma_13059_P2,E4,iTru7_202_07,GAGTCTCT,iTru5_23_A,GGTAACGT,NYU_BMS_Melanoma_13059,pool2,BLANK2.2C +1,BLANK2_2D,BLANK2.2D,NYU_BMS_Melanoma_13059_P2,G4,iTru7_202_08,CAACACCT,iTru5_24_A,CGAGAGAA,NYU_BMS_Melanoma_13059,pool1,BLANK2.2D +1,BLANK2_2E,BLANK2.2E,NYU_BMS_Melanoma_13059_P2,I4,iTru7_202_09,CAGTCTTC,iTru5_13_B,CATTGACG,NYU_BMS_Melanoma_13059,pool2,BLANK2.2E +1,BLANK2_2F,BLANK2.2F,NYU_BMS_Melanoma_13059_P2,K4,iTru7_202_10,GGACTGTT,iTru5_14_B,GGTGATGA,NYU_BMS_Melanoma_13059,pool1,BLANK2.2F +1,BLANK2_2G,BLANK2.2G,NYU_BMS_Melanoma_13059_P2,M4,iTru7_202_11,CTTAGTGG,iTru5_15_B,AACCGTGT,NYU_BMS_Melanoma_13059,pool2,BLANK2.2G +1,BLANK2_2H,BLANK2.2H,NYU_BMS_Melanoma_13059_P2,O4,iTru7_202_12,ATTGCGTG,iTru5_16_B,CCTATTGG,NYU_BMS_Melanoma_13059,pool1,BLANK2.2H +1,SP573843A04,SP573843A04,NYU_BMS_Melanoma_13059_P2,A6,iTru7_203_01,GTAACGAC,iTru5_17_B,TCAGTAGG,NYU_BMS_Melanoma_13059,pool2,SP573843A04 +1,EP683835A01,EP683835A01,NYU_BMS_Melanoma_13059_P2,C6,iTru7_203_02,CTTGCTGT,iTru5_18_B,TATGCGGT,NYU_BMS_Melanoma_13059,pool1,EP683835A01 +1,SP573824A04,SP573824A04,NYU_BMS_Melanoma_13059_P2,E6,iTru7_203_03,GTTGTTCG,iTru5_19_B,ATGCCTAG,NYU_BMS_Melanoma_13059,pool2,SP573824A04 +1,SP335002A04,SP335002A04,NYU_BMS_Melanoma_13059_P2,G6,iTru7_203_04,CGTTGAGT,iTru5_20_B,CTAGCAGT,NYU_BMS_Melanoma_13059,pool1,SP335002A04 +1,SP478193A02,SP478193A02,NYU_BMS_Melanoma_13059_P2,I6,iTru7_203_05,TCGAACCA,iTru5_21_B,AGGTCAAC,NYU_BMS_Melanoma_13059,pool2,SP478193A02 +1,SP232311A04,SP232311A04,NYU_BMS_Melanoma_13059_P2,K6,iTru7_203_06,AGACCGTA,iTru5_22_B,GAACGTGA,NYU_BMS_Melanoma_13059,pool1,SP232311A04 +1,SP415021A02,SP415021A02,NYU_BMS_Melanoma_13059_P2,M6,iTru7_203_07,CAGAGTGT,iTru5_23_B,ATCATGCG,NYU_BMS_Melanoma_13059,pool2,SP415021A02 +1,SP231630A02,SP231630A02,NYU_BMS_Melanoma_13059_P2,O6,iTru7_203_08,GACAAGAG,iTru5_24_B,CAACGAGT,NYU_BMS_Melanoma_13059,pool1,SP231630A02 +1,SP641029A02,SP641029A02,NYU_BMS_Melanoma_13059_P2,A8,iTru7_203_09,GAACACAC,iTru5_13_C,CGCAATGT,NYU_BMS_Melanoma_13059,pool2,SP641029A02 +1,SP232310A04,SP232310A04,NYU_BMS_Melanoma_13059_P2,C8,iTru7_203_10,GCTTAGCT,iTru5_14_C,AACAAGGC,NYU_BMS_Melanoma_13059,pool1,SP232310A04 +1,EP617442B01,EP617442B01,NYU_BMS_Melanoma_13059_P2,E8,iTru7_203_11,GAAGGAAG,iTru5_15_C,ACCATGTC,NYU_BMS_Melanoma_13059,pool2,EP617442B01 +1,EP587478B04,EP587478B04,NYU_BMS_Melanoma_13059_P2,G8,iTru7_203_12,CAGTTCTG,iTru5_16_C,AATCCAGC,NYU_BMS_Melanoma_13059,pool1,EP587478B04 +1,EP447928B04,EP447928B04,NYU_BMS_Melanoma_13059_P2,I8,iTru7_204_01,CAGGAGAT,iTru5_17_C,TTGCAACG,NYU_BMS_Melanoma_13059,pool2,EP447928B04 +1,EP587475B04,EP587475B04,NYU_BMS_Melanoma_13059_P2,K8,iTru7_204_02,GTAGCATC,iTru5_18_C,ACCTTCGA,NYU_BMS_Melanoma_13059,pool1,EP587475B04 +1,EP675042B01,EP675042B01,NYU_BMS_Melanoma_13059_P2,M8,iTru7_204_03,TCGTTCGT,iTru5_19_C,CATACGGA,NYU_BMS_Melanoma_13059,pool2,EP675042B01 +1,EP554513B02,EP554513B02,NYU_BMS_Melanoma_13059_P2,O8,iTru7_204_04,GGCAAGTT,iTru5_20_C,GACCGATA,NYU_BMS_Melanoma_13059,pool1,EP554513B02 +1,EP702221B04,EP702221B04,NYU_BMS_Melanoma_13059_P2,A10,iTru7_204_05,ACCATGTG,iTru5_21_C,AAGCTGGT,NYU_BMS_Melanoma_13059,pool2,EP702221B04 +1,AP568787B02,AP568787B02,NYU_BMS_Melanoma_13059_P2,C10,iTru7_204_06,CAACGGAT,iTru5_22_C,ACACCTCA,NYU_BMS_Melanoma_13059,pool1,AP568787B02 +1,EP054632B01,EP054632B01,NYU_BMS_Melanoma_13059_P2,E10,iTru7_204_07,CAATCGAC,iTru5_23_C,CGGAGTAT,NYU_BMS_Melanoma_13059,pool2,EP054632B01 +1,EP121013B01,EP121013B01,NYU_BMS_Melanoma_13059_P2,G10,iTru7_204_08,GTGTTCCT,iTru5_24_C,CTCGACTT,NYU_BMS_Melanoma_13059,pool1,EP121013B01 +1,EP649418A02,EP649418A02,NYU_BMS_Melanoma_13059_P2,I10,iTru7_204_09,AGGAACCT,iTru5_13_D,ATCCACGA,NYU_BMS_Melanoma_13059,pool2,EP649418A02 +1,EP573313B01,EP573313B01,NYU_BMS_Melanoma_13059_P2,K10,iTru7_204_10,ACCTTCTC,iTru5_14_D,ACAGTTCG,NYU_BMS_Melanoma_13059,pool1,EP573313B01 +1,LP154981A01,LP154981A01,NYU_BMS_Melanoma_13059_P2,M10,iTru7_204_11,CCGTAAGA,iTru5_15_D,ACAAGACG,NYU_BMS_Melanoma_13059,pool2,LP154981A01 +1,AP470859B01,AP470859B01,NYU_BMS_Melanoma_13059_P2,O10,iTru7_204_12,ATCGGTGT,iTru5_16_D,ATCGTGGT,NYU_BMS_Melanoma_13059,pool1,AP470859B01 +1,LP154986A01,LP154986A01,NYU_BMS_Melanoma_13059_P2,A12,iTru7_205_01,AGCTCCTA,iTru5_17_D,AGTCAGGT,NYU_BMS_Melanoma_13059,pool2,LP154986A01 +1,AP732307B04,AP732307B04,NYU_BMS_Melanoma_13059_P2,C12,iTru7_205_02,CCTTGATC,iTru5_18_D,CATCAACC,NYU_BMS_Melanoma_13059,pool1,AP732307B04 +1,EP533426B03,EP533426B03,NYU_BMS_Melanoma_13059_P2,E12,iTru7_205_03,CCATTCAC,iTru5_19_D,GGTCACTA,NYU_BMS_Melanoma_13059,pool2,EP533426B03 +1,EP587476B04,EP587476B04,NYU_BMS_Melanoma_13059_P2,G12,iTru7_205_04,GGACAATC,iTru5_20_D,CGGCATTA,NYU_BMS_Melanoma_13059,pool1,EP587476B04 +1,AP696363B02,AP696363B02,NYU_BMS_Melanoma_13059_P2,I12,iTru7_205_05,AAGGCGTT,iTru5_21_D,ACTCGATC,NYU_BMS_Melanoma_13059,pool2,AP696363B02 +1,EP587477B04,EP587477B04,NYU_BMS_Melanoma_13059_P2,K12,iTru7_205_06,GCCATAAC,iTru5_22_D,ATAGGTCC,NYU_BMS_Melanoma_13059,pool1,EP587477B04 +1,SP683466A02,SP683466A02,NYU_BMS_Melanoma_13059_P2,M12,iTru7_205_07,GAAGTTGG,iTru5_23_D,CAGTCACA,NYU_BMS_Melanoma_13059,pool2,SP683466A02 +1,EP554518B04,EP554518B04,NYU_BMS_Melanoma_13059_P2,O12,iTru7_205_08,AGCCAAGT,iTru5_24_D,TAGTGGTG,NYU_BMS_Melanoma_13059,pool1,EP554518B04 +1,EP533429B04,EP533429B04,NYU_BMS_Melanoma_13059_P2,A14,iTru7_205_09,TGACTGAC,iTru5_13_E,CTCCTGAA,NYU_BMS_Melanoma_13059,pool2,EP533429B04 +1,EP431570B01,EP431570B01,NYU_BMS_Melanoma_13059_P2,C14,iTru7_205_10,CACCTGTT,iTru5_14_E,AATCGCTG,NYU_BMS_Melanoma_13059,pool1,EP431570B01 +1,EP202095B04,EP202095B04,NYU_BMS_Melanoma_13059_P2,E14,iTru7_205_11,ATCCGGTA,iTru5_15_E,TGATAGGC,NYU_BMS_Melanoma_13059,pool2,EP202095B04 +1,EP504030B04,EP504030B04,NYU_BMS_Melanoma_13059_P2,G14,iTru7_205_12,ATCTGTCC,iTru5_16_E,ATGCGTCA,NYU_BMS_Melanoma_13059,pool1,EP504030B04 +1,EP207036B01,EP207036B01,NYU_BMS_Melanoma_13059_P2,I14,iTru7_206_01,CCAAGACT,iTru5_17_E,CAGCATAC,NYU_BMS_Melanoma_13059,pool2,EP207036B01 +1,EP393717B01,EP393717B01,NYU_BMS_Melanoma_13059_P2,K14,iTru7_206_02,ATGGCGAA,iTru5_18_E,AAGTGCAG,NYU_BMS_Melanoma_13059,pool1,EP393717B01 +1,SP491898A02,SP491898A02,NYU_BMS_Melanoma_13059_P2,M14,iTru7_206_03,GGTAGTGT,iTru5_19_E,GTATTCCG,NYU_BMS_Melanoma_13059,pool2,SP491898A02 +1,EP484973B04,EP484973B04,NYU_BMS_Melanoma_13059_P2,O14,iTru7_206_04,TCGCTGTT,iTru5_20_E,GTGATCCA,NYU_BMS_Melanoma_13059,pool1,EP484973B04 +1,EP479794B02,EP479794B02,NYU_BMS_Melanoma_13059_P2,A16,iTru7_206_05,AACGTGGA,iTru5_21_E,TATGGCAC,NYU_BMS_Melanoma_13059,pool2,EP479794B02 +1,EP554515B04,EP554515B04,NYU_BMS_Melanoma_13059_P2,C16,iTru7_206_06,AACGACGT,iTru5_22_E,ACCATAGG,NYU_BMS_Melanoma_13059,pool1,EP554515B04 +1,SP631994A04,SP631994A04,NYU_BMS_Melanoma_13059_P2,E16,iTru7_206_07,AACAGGAC,iTru5_23_E,CTCCAATC,NYU_BMS_Melanoma_13059,pool2,SP631994A04 +1,EP921593A04,EP921593A04,NYU_BMS_Melanoma_13059_P2,G16,iTru7_206_08,AAGCGCAT,iTru5_24_E,AGATACGG,NYU_BMS_Melanoma_13059,pool1,EP921593A04 +1,AP787247B04,AP787247B04,NYU_BMS_Melanoma_13059_P2,I16,iTru7_206_09,CACTGACA,iTru5_13_F,TCGATGAC,NYU_BMS_Melanoma_13059,pool2,AP787247B04 +1,EP090129B04,EP090129B04,NYU_BMS_Melanoma_13059_P2,K16,iTru7_206_10,AGGTCACT,iTru5_14_F,CCAACACT,NYU_BMS_Melanoma_13059,pool1,EP090129B04 +1,EP447975B02,EP447975B02,NYU_BMS_Melanoma_13059_P2,M16,iTru7_206_11,GTCACTGT,iTru5_15_F,CTTCACTG,NYU_BMS_Melanoma_13059,pool2,EP447975B02 +1,EP212214B01,EP212214B01,NYU_BMS_Melanoma_13059_P2,O16,iTru7_206_12,ATGCCAAC,iTru5_16_F,CGATGTTC,NYU_BMS_Melanoma_13059,pool1,EP212214B01 +1,EP410042B01,EP410042B01,NYU_BMS_Melanoma_13059_P2,A18,iTru7_207_01,CACGTTGT,iTru5_17_F,ACCGGTTA,NYU_BMS_Melanoma_13059,pool2,EP410042B01 +1,SP404409A02,SP404409A02,NYU_BMS_Melanoma_13059_P2,C18,iTru7_207_02,TATTCCGG,iTru5_18_F,CTTACAGC,NYU_BMS_Melanoma_13059,pool1,SP404409A02 +1,SP247340A04,SP247340A04,NYU_BMS_Melanoma_13059_P2,E18,iTru7_207_03,TGCTTCCA,iTru5_19_F,TGGCTCTT,NYU_BMS_Melanoma_13059,pool2,SP247340A04 +1,AP029018B01,AP029018B01,NYU_BMS_Melanoma_13059_P2,G18,iTru7_207_04,GTCTAGGT,iTru5_20_F,AAGACCGT,NYU_BMS_Melanoma_13059,pool1,AP029018B01 +1,EP872341A01,EP872341A01,NYU_BMS_Melanoma_13059_P2,I18,iTru7_207_05,GTTCAACC,iTru5_21_F,GGACATCA,NYU_BMS_Melanoma_13059,pool2,EP872341A01 +1,AP062219B03,AP062219B03,NYU_BMS_Melanoma_13059_P2,K18,iTru7_207_06,CGCAATCT,iTru5_22_F,TTGGTGCA,NYU_BMS_Melanoma_13059,pool1,AP062219B03 +1,EP790020A02,EP790020A02,NYU_BMS_Melanoma_13059_P2,M18,iTru7_207_07,TTAAGCGG,iTru5_23_F,AAGCGTTC,NYU_BMS_Melanoma_13059,pool2,EP790020A02 +1,EP808112A04,EP808112A04,NYU_BMS_Melanoma_13059_P2,O18,iTru7_207_08,TGCTTGGT,iTru5_24_F,ACTCTCCA,NYU_BMS_Melanoma_13059,pool1,EP808112A04 +1,SP404403A02,SP404403A02,NYU_BMS_Melanoma_13059_P2,A20,iTru7_207_09,ACACACTC,iTru5_13_G,GAACCTTC,NYU_BMS_Melanoma_13059,pool2,SP404403A02 +1,EP073160B01,EP073160B01,NYU_BMS_Melanoma_13059_P2,C20,iTru7_207_10,CCACTTCT,iTru5_14_G,GGAACATG,NYU_BMS_Melanoma_13059,pool1,EP073160B01 +1,EP012991B03,EP012991B03,NYU_BMS_Melanoma_13059_P2,E20,iTru7_207_11,TTGGTCTC,iTru5_15_G,GCCTATGT,NYU_BMS_Melanoma_13059,pool2,EP012991B03 +1,SP317297A02,SP317297A02,NYU_BMS_Melanoma_13059_P2,G20,iTru7_207_12,CTCATCAG,iTru5_16_G,CCGTAACT,NYU_BMS_Melanoma_13059,pool1,SP317297A02 +1,EP656055A04,EP656055A04,NYU_BMS_Melanoma_13059_P2,I20,iTru7_208_01,ATGACGTC,iTru5_17_G,CGGATCAA,NYU_BMS_Melanoma_13059,pool2,EP656055A04 +1,EP649623A01,EP649623A01,NYU_BMS_Melanoma_13059_P2,K20,iTru7_208_02,AACCTTGG,iTru5_18_G,CCACATTG,NYU_BMS_Melanoma_13059,pool1,EP649623A01 +1,EP790019A01,EP790019A01,NYU_BMS_Melanoma_13059_P2,M20,iTru7_208_03,GTCTTGCA,iTru5_19_G,CTCTATCG,NYU_BMS_Melanoma_13059,pool2,EP790019A01 +1,SP257519A04,SP257519A04,NYU_BMS_Melanoma_13059_P2,O20,iTru7_208_04,CAAGTGCA,iTru5_20_G,TGTGTCAG,NYU_BMS_Melanoma_13059,pool1,SP257519A04 +1,EP808104A01,EP808104A01,NYU_BMS_Melanoma_13059_P2,A22,iTru7_208_05,TCCGAGTT,iTru5_21_G,CGCAACTA,NYU_BMS_Melanoma_13059,pool2,EP808104A01 +1,EP808106A01,EP808106A01,NYU_BMS_Melanoma_13059_P2,C22,iTru7_208_06,ACCTAAGG,iTru5_22_G,GATCAGAC,NYU_BMS_Melanoma_13059,pool1,EP808106A01 +1,SP231629A02,SP231629A02,NYU_BMS_Melanoma_13059_P2,E22,iTru7_208_07,TTGGACGT,iTru5_23_G,ATTCCGCT,NYU_BMS_Melanoma_13059,pool2,SP231629A02 +1,EP675044A01,EP675044A01,NYU_BMS_Melanoma_13059_P2,G22,iTru7_208_08,GATAGCGA,iTru5_24_G,ATCCTTCC,NYU_BMS_Melanoma_13059,pool1,EP675044A01 +1,EP657260A01,EP657260A01,NYU_BMS_Melanoma_13059_P2,I22,iTru7_208_09,TTGGTGAG,iTru5_13_H,GCTTCACA,NYU_BMS_Melanoma_13059,pool2,EP657260A01 +1,EP808110A04,EP808110A04,NYU_BMS_Melanoma_13059_P2,K22,iTru7_208_10,AACTGGTG,iTru5_14_H,CTTCGGTT,NYU_BMS_Melanoma_13059,pool1,EP808110A04 +1,AP032413B04,AP032413B04,NYU_BMS_Melanoma_13059_P2,M22,iTru7_208_11,TAGCCGAA,iTru5_15_H,CATGGATC,NYU_BMS_Melanoma_13059,pool2,AP032413B04 +1,EP843906A04,EP843906A04,NYU_BMS_Melanoma_13059_P2,O22,iTru7_208_12,TGCGAACT,iTru5_16_H,GTCAACAG,NYU_BMS_Melanoma_13059,pool1,EP843906A04 +1,AP173305B04,AP173305B04,NYU_BMS_Melanoma_13059_P2,A24,iTru7_209_01,GACTTAGG,iTru5_17_H,AATTCCGG,NYU_BMS_Melanoma_13059,pool2,AP173305B04 +1,SP231628A02,SP231628A02,NYU_BMS_Melanoma_13059_P2,C24,iTru7_209_02,ACACCAGT,iTru5_18_H,GGCGAATA,NYU_BMS_Melanoma_13059,pool1,SP231628A02 +1,AP173301B04,AP173301B04,NYU_BMS_Melanoma_13059_P2,E24,iTru7_209_03,CCTGATTG,iTru5_19_H,AGGAGGTT,NYU_BMS_Melanoma_13059,pool2,AP173301B04 +1,SP404405A02,SP404405A02,NYU_BMS_Melanoma_13059_P2,G24,iTru7_209_04,TTGTGTGC,iTru5_20_H,ACTCTGAG,NYU_BMS_Melanoma_13059,pool1,SP404405A02 +1,EP649653A04,EP649653A04,NYU_BMS_Melanoma_13059_P2,I24,iTru7_209_05,TACCACAG,iTru5_21_H,GCCTTCTT,NYU_BMS_Melanoma_13059,pool2,EP649653A04 +1,EP718687A04,EP718687A04,NYU_BMS_Melanoma_13059_P2,K24,iTru7_209_06,ATTCGAGG,iTru5_22_H,TGGACCAT,NYU_BMS_Melanoma_13059,pool1,EP718687A04 +1,AP905750A02,AP905750A02,NYU_BMS_Melanoma_13059_P2,M24,iTru7_209_07,GCACGTAA,iTru5_23_H,GCATAGTC,NYU_BMS_Melanoma_13059,pool2,AP905750A02 +1,EP738468A01,EP738468A01,NYU_BMS_Melanoma_13059_P2,O24,iTru7_209_08,GTGTGACA,iTru5_24_H,TACACACG,NYU_BMS_Melanoma_13059,pool1,EP738468A01 +1,C6,C6,NYU_BMS_Melanoma_13059_P3,B1,iTru7_209_09,CTGGTTCT,iTru5_101_A,AACAACCG,NYU_BMS_Melanoma_13059,pool2,C6 +1,EP890157A02,EP890157A02,NYU_BMS_Melanoma_13059_P3,D1,iTru7_209_10,ACTGTGTC,iTru5_102_A,AAGCCTGA,NYU_BMS_Melanoma_13059,pool1,EP890157A02 +1,SP353893A02,SP353893A02,NYU_BMS_Melanoma_13059_P3,F1,iTru7_209_11,CCATACGT,iTru5_103_A,AAGGACCA,NYU_BMS_Melanoma_13059,pool2,SP353893A02 +1,EP944059A02,EP944059A02,NYU_BMS_Melanoma_13059_P3,H1,iTru7_209_12,GGTACTAC,iTru5_104_A,ACAACGTG,NYU_BMS_Melanoma_13059,pool1,EP944059A02 +1,EP970005A01,EP970005A01,NYU_BMS_Melanoma_13059_P3,J1,iTru7_210_01,CAGTCCAA,iTru5_105_A,ACGAACGA,NYU_BMS_Melanoma_13059,pool2,EP970005A01 +1,EP927461A04,EP927461A04,NYU_BMS_Melanoma_13059_P3,L1,iTru7_210_02,TCGTAGTC,iTru5_106_A,ACGTCCAA,NYU_BMS_Melanoma_13059,pool1,EP927461A04 +1,EP808111A03,EP808111A03,NYU_BMS_Melanoma_13059_P3,N1,iTru7_210_03,TCGAGTGA,iTru5_107_A,ACTGGTGT,NYU_BMS_Melanoma_13059,pool2,EP808111A03 +1,EP927459A04,EP927459A04,NYU_BMS_Melanoma_13059_P3,P1,iTru7_210_04,TGTAGCCA,iTru5_108_A,AGATCGTC,NYU_BMS_Melanoma_13059,pool1,EP927459A04 +1,SP317293A02,SP317293A02,NYU_BMS_Melanoma_13059_P3,B3,iTru7_210_05,TGCAGGTA,iTru5_109_A,AGCGAGAT,NYU_BMS_Melanoma_13059,pool2,SP317293A02 +1,SP235186A04,SP235186A04,NYU_BMS_Melanoma_13059_P3,D3,iTru7_210_06,CTAGGTGA,iTru5_110_A,AGGATAGC,NYU_BMS_Melanoma_13059,pool1,SP235186A04 +1,SP399724A04,SP399724A04,NYU_BMS_Melanoma_13059_P3,F3,iTru7_210_07,CTCCATGT,iTru5_111_A,AGGTGTTG,NYU_BMS_Melanoma_13059,pool2,SP399724A04 +1,EP738469A01,EP738469A01,NYU_BMS_Melanoma_13059_P3,H3,iTru7_210_08,CTTACAGC,iTru5_112_A,AGTCTTGG,NYU_BMS_Melanoma_13059,pool1,EP738469A01 +1,SP284095A03,SP284095A03,NYU_BMS_Melanoma_13059_P3,J3,iTru7_210_09,CGTATTCG,iTru5_101_B,GGTTGGTA,NYU_BMS_Melanoma_13059,pool2,SP284095A03 +1,C5,C5,NYU_BMS_Melanoma_13059_P3,L3,iTru7_210_10,ATTCTGGC,iTru5_102_B,GGAGGAAT,NYU_BMS_Melanoma_13059,pool1,C5 +1,EP337325B04,EP337325B04,NYU_BMS_Melanoma_13059_P3,N3,iTru7_210_11,TACCAGGA,iTru5_103_B,GTAAGGTG,NYU_BMS_Melanoma_13059,pool2,EP337325B04 +1,EP759450A04,EP759450A04,NYU_BMS_Melanoma_13059_P3,P3,iTru7_210_12,TACATCGG,iTru5_104_B,GGTGTACA,NYU_BMS_Melanoma_13059,pool1,EP759450A04 +1,BLANK3_3A,BLANK3.3A,NYU_BMS_Melanoma_13059_P3,B5,iTru7_301_01,GTGGTGTT,iTru5_105_B,GGATGTAG,NYU_BMS_Melanoma_13059,pool2,BLANK3.3A +1,BLANK3_3B,BLANK3.3B,NYU_BMS_Melanoma_13059_P3,D5,iTru7_301_02,CGCATGAT,iTru5_106_B,GTCCTGTT,NYU_BMS_Melanoma_13059,pool1,BLANK3.3B +1,BLANK3_3C,BLANK3.3C,NYU_BMS_Melanoma_13059_P3,F5,iTru7_301_03,AGTCGACA,iTru5_107_B,GTACCACA,NYU_BMS_Melanoma_13059,pool2,BLANK3.3C +1,BLANK3_3D,BLANK3.3D,NYU_BMS_Melanoma_13059_P3,H5,iTru7_301_04,GTGAGCTT,iTru5_108_B,GATCTCAG,NYU_BMS_Melanoma_13059,pool1,BLANK3.3D +1,BLANK3_3E,BLANK3.3E,NYU_BMS_Melanoma_13059_P3,J5,iTru7_301_05,GACATTCC,iTru5_109_B,GAGCTCTA,NYU_BMS_Melanoma_13059,pool2,BLANK3.3E +1,BLANK3_3F,BLANK3.3F,NYU_BMS_Melanoma_13059_P3,L5,iTru7_301_06,AGTTCGTC,iTru5_110_B,TACTAGCG,NYU_BMS_Melanoma_13059,pool1,BLANK3.3F +1,BLANK3_3G,BLANK3.3G,NYU_BMS_Melanoma_13059_P3,N5,iTru7_301_07,TAATGCCG,iTru5_111_B,GCACACAA,NYU_BMS_Melanoma_13059,pool2,BLANK3.3G +1,BLANK3_3H,BLANK3.3H,NYU_BMS_Melanoma_13059_P3,P5,iTru7_301_08,CGACCATT,iTru5_112_B,GAATCACC,NYU_BMS_Melanoma_13059,pool1,BLANK3.3H +1,AP006367B02,AP006367B02,NYU_BMS_Melanoma_13059_P3,B7,iTru7_301_09,CTGAAGCT,iTru5_101_C,AACAGCGA,NYU_BMS_Melanoma_13059,pool2,AP006367B02 +1,EP929277A02,EP929277A02,NYU_BMS_Melanoma_13059_P3,D7,iTru7_301_10,TTGAGGCA,iTru5_102_C,AAGCGACT,NYU_BMS_Melanoma_13059,pool1,EP929277A02 +1,AP324642B04,AP324642B04,NYU_BMS_Melanoma_13059_P3,F7,iTru7_301_11,GATCGAGT,iTru5_103_C,AAGGCGTA,NYU_BMS_Melanoma_13059,pool2,AP324642B04 +1,EP786631A04,EP786631A04,NYU_BMS_Melanoma_13059_P3,H7,iTru7_301_12,ATACTCCG,iTru5_104_C,ACACCGAT,NYU_BMS_Melanoma_13059,pool1,EP786631A04 +1,EP657385A04,EP657385A04,NYU_BMS_Melanoma_13059_P3,J7,iTru7_302_01,AAGTCCGT,iTru5_105_C,ACGAATCC,NYU_BMS_Melanoma_13059,pool2,EP657385A04 +1,SP235189A01,SP235189A01,NYU_BMS_Melanoma_13059_P3,L7,iTru7_302_02,TAGCGTCT,iTru5_106_C,ACTACGGT,NYU_BMS_Melanoma_13059,pool1,SP235189A01 +1,EP448041B04,EP448041B04,NYU_BMS_Melanoma_13059_P3,N7,iTru7_302_03,TGACGCAT,iTru5_107_C,AGAAGCCT,NYU_BMS_Melanoma_13059,pool2,EP448041B04 +1,SP231631A02,SP231631A02,NYU_BMS_Melanoma_13059_P3,P7,iTru7_302_04,AGCGTGTT,iTru5_108_C,AGATTGCG,NYU_BMS_Melanoma_13059,pool1,SP231631A02 +1,SP280481A02,SP280481A02,NYU_BMS_Melanoma_13059_P3,B9,iTru7_302_05,TGCACCAA,iTru5_109_C,AGCGTGTA,NYU_BMS_Melanoma_13059,pool2,SP280481A02 +1,AP032412B04,AP032412B04,NYU_BMS_Melanoma_13059_P3,D9,iTru7_302_06,ATCACACG,iTru5_110_C,AGGCTGAA,NYU_BMS_Melanoma_13059,pool1,AP032412B04 +1,EP649737A03,EP649737A03,NYU_BMS_Melanoma_13059_P3,F9,iTru7_302_07,ATGCCTGT,iTru5_111_C,AGGTTCCT,NYU_BMS_Melanoma_13059,pool2,EP649737A03 +1,AP967057A04,AP967057A04,NYU_BMS_Melanoma_13059_P3,H9,iTru7_302_08,ACCTGACT,iTru5_112_C,AGTGACCT,NYU_BMS_Melanoma_13059,pool1,AP967057A04 +1,EP876243A04,EP876243A04,NYU_BMS_Melanoma_13059_P3,J9,iTru7_302_09,GCTTCGAA,iTru5_101_D,GGTTAGCT,NYU_BMS_Melanoma_13059,pool2,EP876243A04 +1,SP229387A04,SP229387A04,NYU_BMS_Melanoma_13059_P3,L9,iTru7_302_10,CGGTCATA,iTru5_102_D,GTAGCGTA,NYU_BMS_Melanoma_13059,pool1,SP229387A04 +1,EP667743A04,EP667743A04,NYU_BMS_Melanoma_13059_P3,N9,iTru7_302_11,GTTAGACG,iTru5_103_D,GGACTACT,NYU_BMS_Melanoma_13059,pool2,EP667743A04 +1,SP246941A01,SP246941A01,NYU_BMS_Melanoma_13059_P3,P9,iTru7_302_12,TCTAACGC,iTru5_104_D,TGGTTCGA,NYU_BMS_Melanoma_13059,pool1,SP246941A01 +1,AP745799A04,AP745799A04,NYU_BMS_Melanoma_13059_P3,B11,iTru7_303_01,ATAGCGGT,iTru5_105_D,GGAGTCTT,NYU_BMS_Melanoma_13059,pool2,AP745799A04 +1,SP205732A02,SP205732A02,NYU_BMS_Melanoma_13059_P3,D11,iTru7_303_02,GGACCTAT,iTru5_106_D,GGATTCAC,NYU_BMS_Melanoma_13059,pool1,SP205732A02 +1,SP230382A04,SP230382A04,NYU_BMS_Melanoma_13059_P3,F11,iTru7_303_03,CGATGCTT,iTru5_107_D,TCGGATTC,NYU_BMS_Melanoma_13059,pool2,SP230382A04 +1,SP230380A02,SP230380A02,NYU_BMS_Melanoma_13059_P3,H11,iTru7_303_04,GAGCTTGT,iTru5_108_D,GAGCAATC,NYU_BMS_Melanoma_13059,pool1,SP230380A02 +1,SP230381A01,SP230381A01,NYU_BMS_Melanoma_13059_P3,J11,iTru7_303_05,GTGAAGTG,iTru5_109_D,GATCCACT,NYU_BMS_Melanoma_13059,pool2,SP230381A01 +1,SP205754A01,SP205754A01,NYU_BMS_Melanoma_13059_P3,L11,iTru7_303_06,GAGTGGTT,iTru5_110_D,GAAGACTG,NYU_BMS_Melanoma_13059,pool1,SP205754A01 +1,EP606662B04,EP606662B04,NYU_BMS_Melanoma_13059_P3,N11,iTru7_303_07,TGATACGC,iTru5_111_D,GCCACTTA,NYU_BMS_Melanoma_13059,pool2,EP606662B04 +1,AP780167B02,AP780167B02,NYU_BMS_Melanoma_13059_P3,P11,iTru7_303_08,AGCAGATG,iTru5_112_D,TCCATTGC,NYU_BMS_Melanoma_13059,pool1,AP780167B02 +1,EP447927B04,EP447927B04,NYU_BMS_Melanoma_13059_P3,B13,iTru7_303_09,CCAGTGTT,iTru5_101_E,AACAGTCC,NYU_BMS_Melanoma_13059,pool2,EP447927B04 +1,C18,C18,NYU_BMS_Melanoma_13059_P3,D13,iTru7_303_10,ATTCCTCC,iTru5_102_E,AAGCTCAC,NYU_BMS_Melanoma_13059,pool1,C18 +1,LP191039A01,LP191039A01,NYU_BMS_Melanoma_13059_P3,F13,iTru7_303_11,CTAACTCG,iTru5_103_E,AAGTCCTC,NYU_BMS_Melanoma_13059,pool2,LP191039A01 +1,EP606663B04,EP606663B04,NYU_BMS_Melanoma_13059_P3,H13,iTru7_303_12,GATGAGAC,iTru5_104_E,ACACTCTG,NYU_BMS_Melanoma_13059,pool1,EP606663B04 +1,EP573296B01,EP573296B01,NYU_BMS_Melanoma_13059_P3,J13,iTru7_304_01,TCAGGCTT,iTru5_105_E,ACGGTACA,NYU_BMS_Melanoma_13059,pool2,EP573296B01 +1,EP447926B04,EP447926B04,NYU_BMS_Melanoma_13059_P3,L13,iTru7_304_02,GTTCTCGT,iTru5_106_E,ACTCCTAC,NYU_BMS_Melanoma_13059,pool1,EP447926B04 +1,LP127767A01,LP127767A01,NYU_BMS_Melanoma_13059_P3,N13,iTru7_304_03,ATCGATCG,iTru5_107_E,AGAGGATG,NYU_BMS_Melanoma_13059,pool2,LP127767A01 +1,EP479266B04,EP479266B04,NYU_BMS_Melanoma_13059_P3,P13,iTru7_304_04,CCTCAGTT,iTru5_108_E,AGCCGTAA,NYU_BMS_Melanoma_13059,pool1,EP479266B04 +1,LP128543A01,LP128543A01,NYU_BMS_Melanoma_13059_P3,B15,iTru7_304_05,ACTGCTAG,iTru5_109_E,AGCTTCAG,NYU_BMS_Melanoma_13059,pool2,LP128543A01 +1,EP479270B03,EP479270B03,NYU_BMS_Melanoma_13059_P3,D15,iTru7_304_06,TCCGTGAA,iTru5_110_E,AGGTAGGA,NYU_BMS_Melanoma_13059,pool1,EP479270B03 +1,EP921594A04,EP921594A04,NYU_BMS_Melanoma_13059_P3,F15,iTru7_304_07,GGATTCGT,iTru5_111_E,AGTACACG,NYU_BMS_Melanoma_13059,pool2,EP921594A04 +1,EP554501B04,EP554501B04,NYU_BMS_Melanoma_13059_P3,H15,iTru7_304_08,GGTCAGAT,iTru5_112_E,AGTGCATC,NYU_BMS_Melanoma_13059,pool1,EP554501B04 +1,EP542577B04,EP542577B04,NYU_BMS_Melanoma_13059_P3,J15,iTru7_304_09,TCGTGGAT,iTru5_101_F,TTGGACTG,NYU_BMS_Melanoma_13059,pool2,EP542577B04 +1,EP487995B04,EP487995B04,NYU_BMS_Melanoma_13059_P3,L15,iTru7_304_10,CGTGTGTA,iTru5_102_F,GTCGATTG,NYU_BMS_Melanoma_13059,pool1,EP487995B04 +1,EP542578B04,EP542578B04,NYU_BMS_Melanoma_13059_P3,N15,iTru7_304_11,GTGTCTGA,iTru5_103_F,GGCATTCT,NYU_BMS_Melanoma_13059,pool2,EP542578B04 +1,EP573310B01,EP573310B01,NYU_BMS_Melanoma_13059_P3,P15,iTru7_304_12,GAATCGTG,iTru5_104_F,TGGTATCC,NYU_BMS_Melanoma_13059,pool1,EP573310B01 +1,EP244366B01,EP244366B01,NYU_BMS_Melanoma_13059_P3,B17,iTru7_305_01,GCGATAGT,iTru5_105_F,GGCAAGTT,NYU_BMS_Melanoma_13059,pool2,EP244366B01 +1,EP533389B03,EP533389B03,NYU_BMS_Melanoma_13059_P3,D17,iTru7_305_02,GGCTATTG,iTru5_106_F,GTCTGAGT,NYU_BMS_Melanoma_13059,pool1,EP533389B03 +1,EP244360B01,EP244360B01,NYU_BMS_Melanoma_13059_P3,F17,iTru7_305_03,AGTTACGG,iTru5_107_F,TCTACGCA,NYU_BMS_Melanoma_13059,pool2,EP244360B01 +1,AP911328B01,AP911328B01,NYU_BMS_Melanoma_13059_P3,H17,iTru7_305_04,CGTACGAA,iTru5_108_F,GAGGCATT,NYU_BMS_Melanoma_13059,pool1,AP911328B01 +1,AP481403B02,AP481403B02,NYU_BMS_Melanoma_13059_P3,J17,iTru7_305_05,ACCACGAT,iTru5_109_F,GCTAAGGA,NYU_BMS_Melanoma_13059,pool2,AP481403B02 +1,22_001_801_552_503_00,22.001.801.552.503.00,NYU_BMS_Melanoma_13059_P3,L17,iTru7_305_06,GATTACCG,iTru5_110_F,GCCAGAAT,NYU_BMS_Melanoma_13059,pool1,22_001_801_552_503_00 +1,EP372981B04,EP372981B04,NYU_BMS_Melanoma_13059_P3,N17,iTru7_305_07,GAGATACG,iTru5_111_F,TAAGTGGC,NYU_BMS_Melanoma_13059,pool2,EP372981B04 +1,EP447929B04,EP447929B04,NYU_BMS_Melanoma_13059_P3,P17,iTru7_305_08,CGACGTTA,iTru5_112_F,GCAATGAG,NYU_BMS_Melanoma_13059,pool1,EP447929B04 +1,SP573849A04,SP573849A04,NYU_BMS_Melanoma_13059_P3,B19,iTru7_305_09,GAGATGTC,iTru5_101_G,AACTGAGG,NYU_BMS_Melanoma_13059,pool2,SP573849A04 +1,SP577399A02,SP577399A02,NYU_BMS_Melanoma_13059_P3,D19,iTru7_305_10,GATTGGAG,iTru5_102_G,AAGGAAGG,NYU_BMS_Melanoma_13059,pool1,SP577399A02 +1,EP606656B03,EP606656B03,NYU_BMS_Melanoma_13059_P3,F19,iTru7_305_11,GCAATTCG,iTru5_103_G,AATGGTCG,NYU_BMS_Melanoma_13059,pool2,EP606656B03 +1,LP166715A01,LP166715A01,NYU_BMS_Melanoma_13059_P3,H19,iTru7_305_12,CGTCAATG,iTru5_104_G,ACAGCAAG,NYU_BMS_Melanoma_13059,pool1,LP166715A01 +1,AP668628B04,AP668628B04,NYU_BMS_Melanoma_13059_P3,J19,iTru7_401_01,ATGCACGA,iTru5_105_G,ACGTATGG,NYU_BMS_Melanoma_13059,pool2,AP668628B04 +1,C14,C14,NYU_BMS_Melanoma_13059_P3,L19,iTru7_401_02,ATCGCCAT,iTru5_106_G,ACTGCACT,NYU_BMS_Melanoma_13059,pool1,C14 +1,EP446610B02,EP446610B02,NYU_BMS_Melanoma_13059_P3,N19,iTru7_401_03,TCTCGCAA,iTru5_107_G,AGAGTCCA,NYU_BMS_Melanoma_13059,pool2,EP446610B02 +1,EP339061B02,EP339061B02,NYU_BMS_Melanoma_13059_P3,P19,iTru7_401_04,ACGACAGA,iTru5_108_G,AGCCTATC,NYU_BMS_Melanoma_13059,pool1,EP339061B02 +1,SP681591A04,SP681591A04,NYU_BMS_Melanoma_13059_P3,B21,iTru7_401_05,TTACGGCT,iTru5_109_G,AGGAACAC,NYU_BMS_Melanoma_13059,pool2,SP681591A04 +1,EP393712B02,EP393712B02,NYU_BMS_Melanoma_13059_P3,D21,iTru7_401_06,GAGGACTT,iTru5_110_G,AGGTCTGT,NYU_BMS_Melanoma_13059,pool1,EP393712B02 +1,EP410041B01,EP410041B01,NYU_BMS_Melanoma_13059_P3,F21,iTru7_401_07,GGCATACT,iTru5_111_G,AGTATGCC,NYU_BMS_Melanoma_13059,pool2,EP410041B01 +1,SP453872A01,SP453872A01,NYU_BMS_Melanoma_13059_P3,H21,iTru7_401_08,CGTAGGTT,iTru5_112_G,AGTTCGCA,NYU_BMS_Melanoma_13059,pool1,SP453872A01 +1,22_001_710_503_791_00,22.001.710.503.791.00,NYU_BMS_Melanoma_13059_P3,J21,iTru7_401_09,ATATGCGC,iTru5_101_H,TGGAAGCA,NYU_BMS_Melanoma_13059,pool2,22_001_710_503_791_00 +1,LP128540A01,LP128540A01,NYU_BMS_Melanoma_13059_P3,L21,iTru7_401_10,GGATGTAG,iTru5_102_H,GTCAGTCA,NYU_BMS_Melanoma_13059,pool1,LP128540A01 +1,EP339053B02,EP339053B02,NYU_BMS_Melanoma_13059_P3,N21,iTru7_401_11,CCTGTCAT,iTru5_103_H,GTAACCGA,NYU_BMS_Melanoma_13059,pool2,EP339053B02 +1,EP617443B01,EP617443B01,NYU_BMS_Melanoma_13059_P3,P21,iTru7_401_12,TGCTCATG,iTru5_104_H,GTTATGGC,NYU_BMS_Melanoma_13059,pool1,EP617443B01 +1,EP190307B01,EP190307B01,NYU_BMS_Melanoma_13059_P3,B23,iTru7_402_01,TGAAGACG,iTru5_105_H,GTAAGCAC,NYU_BMS_Melanoma_13059,pool2,EP190307B01 +1,AP795068B04,AP795068B04,NYU_BMS_Melanoma_13059_P3,D23,iTru7_402_02,GTTACGCA,iTru5_106_H,GGAATGTC,NYU_BMS_Melanoma_13059,pool1,AP795068B04 +1,LP128541A01,LP128541A01,NYU_BMS_Melanoma_13059_P3,F23,iTru7_402_03,ACTCAGAC,iTru5_107_H,GAGAAGGT,NYU_BMS_Melanoma_13059,pool2,LP128541A01 +1,EP584756B04,EP584756B04,NYU_BMS_Melanoma_13059_P3,H23,iTru7_402_04,GTCCACAT,iTru5_108_H,GAGTAGAG,NYU_BMS_Melanoma_13059,pool1,EP584756B04 +1,SP284096A02,SP284096A02,NYU_BMS_Melanoma_13059_P3,J23,iTru7_402_05,CGCTAGTA,iTru5_109_H,GCATTGGT,NYU_BMS_Melanoma_13059,pool2,SP284096A02 +1,EP431562B04,EP431562B04,NYU_BMS_Melanoma_13059_P3,L23,iTru7_402_06,GAATCCGA,iTru5_110_H,TCCAGCAA,NYU_BMS_Melanoma_13059,pool1,EP431562B04 +1,EP685640B01,EP685640B01,NYU_BMS_Melanoma_13059_P3,N23,iTru7_402_07,GAGACGAT,iTru5_111_H,GAATCCGT,NYU_BMS_Melanoma_13059,pool2,EP685640B01 +1,EP339059B02,EP339059B02,NYU_BMS_Melanoma_13059_P3,P23,iTru7_402_08,TAAGTGGC,iTru5_112_H,TACATCGG,NYU_BMS_Melanoma_13059,pool1,EP339059B02 +1,EP431575B01,EP431575B01,NYU_BMS_Melanoma_13059_P4,B2,iTru7_402_09,ACTGAGGT,iTru5_113_A,ATAACGCC,NYU_BMS_Melanoma_13059,pool2,EP431575B01 +1,EP379938B01,EP379938B01,NYU_BMS_Melanoma_13059_P4,D2,iTru7_402_10,TGTACCGT,iTru5_114_A,ATGACAGG,NYU_BMS_Melanoma_13059,pool1,EP379938B01 +1,EP529635B02,EP529635B02,NYU_BMS_Melanoma_13059_P4,F2,iTru7_402_11,AGCAAGCA,iTru5_115_A,CAACACAG,NYU_BMS_Melanoma_13059,pool2,EP529635B02 +1,EP554506B04,EP554506B04,NYU_BMS_Melanoma_13059_P4,H2,iTru7_402_12,TCTCGTGT,iTru5_116_A,CACCAGTT,NYU_BMS_Melanoma_13059,pool1,EP554506B04 +1,EP455757B04,EP455757B04,NYU_BMS_Melanoma_13059_P4,J2,iTru7_115_01,CAAGGTCT,iTru5_117_A,CAGAGTGA,NYU_BMS_Melanoma_13059,pool2,EP455757B04 +1,SP491900A02,SP491900A02,NYU_BMS_Melanoma_13059_P4,L2,iTru7_115_02,TAGACGTG,iTru5_118_A,CCGATGTA,NYU_BMS_Melanoma_13059,pool1,SP491900A02 +1,LP196272A01,LP196272A01,NYU_BMS_Melanoma_13059_P4,N2,iTru7_115_03,TGAGCTAG,iTru5_119_A,CCTTCCAT,NYU_BMS_Melanoma_13059,pool2,LP196272A01 +1,SP704319A04,SP704319A04,NYU_BMS_Melanoma_13059_P4,P2,iTru7_115_04,CTGACACA,iTru5_120_A,CGGTAATC,NYU_BMS_Melanoma_13059,pool1,SP704319A04 +1,EP617441B01,EP617441B01,NYU_BMS_Melanoma_13059_P4,B4,iTru7_115_05,ACGGTCTT,iTru5_121_A,CTAGGTTG,NYU_BMS_Melanoma_13059,pool2,EP617441B01 +1,AP687591B04,AP687591B04,NYU_BMS_Melanoma_13059_P4,D4,iTru7_115_06,GCTGTTGT,iTru5_122_A,CTCGGTAA,NYU_BMS_Melanoma_13059,pool1,AP687591B04 +1,SP640978A02,SP640978A02,NYU_BMS_Melanoma_13059_P4,F4,iTru7_115_07,CACTAGCT,iTru5_123_A,CTGTGGTA,NYU_BMS_Melanoma_13059,pool2,SP640978A02 +1,EP981129A02,EP981129A02,NYU_BMS_Melanoma_13059_P4,H4,iTru7_115_08,TGGTACAG,iTru5_124_A,GTACGATC,NYU_BMS_Melanoma_13059,pool1,EP981129A02 +1,EP455763B04,EP455763B04,NYU_BMS_Melanoma_13059_P4,J4,iTru7_115_09,AGCACTTC,iTru5_113_B,TCTGTCGT,NYU_BMS_Melanoma_13059,pool2,EP455763B04 +1,EP339057B02,EP339057B02,NYU_BMS_Melanoma_13059_P4,L4,iTru7_115_10,GCATACAG,iTru5_114_B,GAATGGCA,NYU_BMS_Melanoma_13059,pool1,EP339057B02 +1,SP491897A02,SP491897A02,NYU_BMS_Melanoma_13059_P4,N4,iTru7_115_11,CTTAGGAC,iTru5_115_B,GTGTGTTC,NYU_BMS_Melanoma_13059,pool2,SP491897A02 +1,EP980752B04,EP980752B04,NYU_BMS_Melanoma_13059_P4,P4,iTru7_211_01,GCTTCTTG,iTru5_116_B,GGTTGAAC,NYU_BMS_Melanoma_13059,pool1,EP980752B04 +1,LP128539A01,LP128539A01,NYU_BMS_Melanoma_13059_P4,B6,iTru7_101_01,ACGTTACC,iTru5_117_B,GGCTCAAT,NYU_BMS_Melanoma_13059,pool2,LP128539A01 +1,EP996831B04,EP996831B04,NYU_BMS_Melanoma_13059_P4,D6,iTru7_101_02,CTGTGTTG,iTru5_118_B,TTCGCCAT,NYU_BMS_Melanoma_13059,pool1,EP996831B04 +1,EP273332B04,EP273332B04,NYU_BMS_Melanoma_13059_P4,F6,iTru7_101_03,TGAGGTGT,iTru5_119_B,GTCCTTGA,NYU_BMS_Melanoma_13059,pool2,EP273332B04 +1,EP483291B04,EP483291B04,NYU_BMS_Melanoma_13059_P4,H6,iTru7_101_04,GATCCATG,iTru5_120_B,TAACGTCG,NYU_BMS_Melanoma_13059,pool1,EP483291B04 +1,EP393715B01,EP393715B01,NYU_BMS_Melanoma_13059_P4,J6,iTru7_101_05,GCCTATCA,iTru5_121_B,GAGACCAA,NYU_BMS_Melanoma_13059,pool2,EP393715B01 +1,EP617440B01,EP617440B01,NYU_BMS_Melanoma_13059_P4,L6,iTru7_101_06,AACAACCG,iTru5_122_B,GATCAAGG,NYU_BMS_Melanoma_13059,pool1,EP617440B01 +1,EP729434A01,EP729434A01,NYU_BMS_Melanoma_13059_P4,N6,iTru7_101_07,ACTCGTTG,iTru5_123_B,GCAACCAT,NYU_BMS_Melanoma_13059,pool2,EP729434A01 +1,SP645141A03,SP645141A03,NYU_BMS_Melanoma_13059_P4,P6,iTru7_101_08,CCTATGGT,iTru5_124_B,AAGGAGAC,NYU_BMS_Melanoma_13059,pool1,SP645141A03 +1,BLANK4_4A,BLANK4.4A,NYU_BMS_Melanoma_13059_P4,B8,iTru7_101_09,TGTACACC,iTru5_113_C,ATCGGAGA,NYU_BMS_Melanoma_13059,pool2,BLANK4.4A +1,BLANK4_4B,BLANK4.4B,NYU_BMS_Melanoma_13059_P4,D8,iTru7_101_10,GTATGCTG,iTru5_114_C,ATGCGCTT,NYU_BMS_Melanoma_13059,pool1,BLANK4.4B +1,BLANK4_4C,BLANK4.4C,NYU_BMS_Melanoma_13059_P4,F8,iTru7_101_11,TGATGTCC,iTru5_115_C,CAACCGTA,NYU_BMS_Melanoma_13059,pool2,BLANK4.4C +1,BLANK4_4D,BLANK4.4D,NYU_BMS_Melanoma_13059_P4,H8,iTru7_101_12,GTCCTTCT,iTru5_116_C,CACTTCAC,NYU_BMS_Melanoma_13059,pool1,BLANK4.4D +1,BLANK4_4E,BLANK4.4E,NYU_BMS_Melanoma_13059_P4,J8,iTru7_102_01,ATAAGGCG,iTru5_117_C,CAGCTAGA,NYU_BMS_Melanoma_13059,pool2,BLANK4.4E +1,BLANK4_4F,BLANK4.4F,NYU_BMS_Melanoma_13059_P4,L8,iTru7_102_02,CTTACCTG,iTru5_118_C,CCGTTATG,NYU_BMS_Melanoma_13059,pool1,BLANK4.4F +1,BLANK4_4G,BLANK4.4G,NYU_BMS_Melanoma_13059_P4,N8,iTru7_102_03,CGTTGCAA,iTru5_119_C,CGAACAAC,NYU_BMS_Melanoma_13059,pool2,BLANK4.4G +1,BLANK4_4H,BLANK4.4H,NYU_BMS_Melanoma_13059_P4,P8,iTru7_102_04,GATTCAGC,iTru5_120_C,CGTAGATG,NYU_BMS_Melanoma_13059,pool1,BLANK4.4H +1,SP232114A04,SP232114A04,NYU_BMS_Melanoma_13059_P4,B10,iTru7_102_05,TCACGTTC,iTru5_121_C,CTATGCCT,NYU_BMS_Melanoma_13059,pool2,SP232114A04 +1,EP393714B01,EP393714B01,NYU_BMS_Melanoma_13059_P4,D10,iTru7_102_06,TGTGCGTT,iTru5_122_C,CTGATGAG,NYU_BMS_Melanoma_13059,pool1,EP393714B01 +1,EP533388B01,EP533388B01,NYU_BMS_Melanoma_13059_P4,F10,iTru7_102_07,TAGTTGCG,iTru5_123_C,CTTCCTTC,NYU_BMS_Melanoma_13059,pool2,EP533388B01 +1,EP724905B01,EP724905B01,NYU_BMS_Melanoma_13059_P4,H10,iTru7_102_08,AAGAGCCA,iTru5_124_C,GTCTCATC,NYU_BMS_Melanoma_13059,pool1,EP724905B01 +1,EP282108B01,EP282108B01,NYU_BMS_Melanoma_13059_P4,J10,iTru7_102_09,ACAGCTCA,iTru5_113_D,GCGCATAT,NYU_BMS_Melanoma_13059,pool2,EP282108B01 +1,EP282107B01,EP282107B01,NYU_BMS_Melanoma_13059_P4,L10,iTru7_102_10,GTTAAGGC,iTru5_114_D,GAAGATCC,NYU_BMS_Melanoma_13059,pool1,EP282107B01 +1,EP001625B01,EP001625B01,NYU_BMS_Melanoma_13059_P4,N10,iTru7_102_11,AAGCCACA,iTru5_115_D,GTTGGCAT,NYU_BMS_Melanoma_13059,pool2,EP001625B01 +1,EP073209B02,EP073209B02,NYU_BMS_Melanoma_13059_P4,P10,iTru7_102_12,ACACGGTT,iTru5_116_D,GTGAATGG,NYU_BMS_Melanoma_13059,pool1,EP073209B02 +1,SP232079A01,SP232079A01,NYU_BMS_Melanoma_13059_P4,B12,iTru7_103_01,CAGCGATT,iTru5_117_D,GTATCGAG,NYU_BMS_Melanoma_13059,pool2,SP232079A01 +1,EP772145A02,EP772145A02,NYU_BMS_Melanoma_13059_P4,D12,iTru7_103_02,TAGTGACC,iTru5_118_D,TGCAAGAC,NYU_BMS_Melanoma_13059,pool1,EP772145A02 +1,AP771472A04,AP771472A04,NYU_BMS_Melanoma_13059_P4,F12,iTru7_103_03,CGAGACTA,iTru5_119_D,GAGTGTGT,NYU_BMS_Melanoma_13059,pool2,AP771472A04 +1,AP223470B01,AP223470B01,NYU_BMS_Melanoma_13059_P4,H12,iTru7_103_04,GACATGGT,iTru5_120_D,TAAGCGCA,NYU_BMS_Melanoma_13059,pool1,AP223470B01 +1,SP404412A02,SP404412A02,NYU_BMS_Melanoma_13059_P4,J12,iTru7_103_05,GCATGTCT,iTru5_121_D,TAGCAGGA,NYU_BMS_Melanoma_13059,pool2,SP404412A02 +1,EP772143A02,EP772143A02,NYU_BMS_Melanoma_13059_P4,L12,iTru7_103_06,ACTCCATC,iTru5_122_D,GACTACGA,NYU_BMS_Melanoma_13059,pool1,EP772143A02 +1,SP408629A01,SP408629A01,NYU_BMS_Melanoma_13059_P4,N12,iTru7_103_07,TGTGACTG,iTru5_123_D,GACGTCAT,NYU_BMS_Melanoma_13059,pool2,SP408629A01 +1,EP749735A07,EP749735A07,NYU_BMS_Melanoma_13059_P4,P12,iTru7_103_08,CGAAGAAC,iTru5_124_D,AAGAGGCA,NYU_BMS_Melanoma_13059,pool1,EP749735A07 +1,EP846485A01,EP846485A01,NYU_BMS_Melanoma_13059_P4,B14,iTru7_103_09,GGTGTCTT,iTru5_113_E,ATCGTCTC,NYU_BMS_Melanoma_13059,pool2,EP846485A01 +1,EP808109A01,EP808109A01,NYU_BMS_Melanoma_13059_P4,D14,iTru7_103_10,AAGAAGGC,iTru5_114_E,ATGGCGAT,NYU_BMS_Melanoma_13059,pool1,EP808109A01 +1,SP416130A04,SP416130A04,NYU_BMS_Melanoma_13059_P4,F14,iTru7_103_11,AGGTTCGA,iTru5_115_E,CAAGAAGC,NYU_BMS_Melanoma_13059,pool2,SP416130A04 +1,EP882752A01,EP882752A01,NYU_BMS_Melanoma_13059_P4,H14,iTru7_103_12,CATGTTCC,iTru5_116_E,CAGAACTG,NYU_BMS_Melanoma_13059,pool1,EP882752A01 +1,AP953594A02,AP953594A02,NYU_BMS_Melanoma_13059_P4,J14,iTru7_104_01,GTGCCATA,iTru5_117_E,CAGGTAAG,NYU_BMS_Melanoma_13059,pool2,AP953594A02 +1,AP046324B02,AP046324B02,NYU_BMS_Melanoma_13059_P4,L14,iTru7_104_02,CCTTGTAG,iTru5_118_E,CCTACCTA,NYU_BMS_Melanoma_13059,pool1,AP046324B02 +1,AP891020A04,AP891020A04,NYU_BMS_Melanoma_13059_P4,N14,iTru7_104_03,GCTGGATT,iTru5_119_E,CGAAGTCA,NYU_BMS_Melanoma_13059,pool2,AP891020A04 +1,EP790023A01,EP790023A01,NYU_BMS_Melanoma_13059_P4,P14,iTru7_104_04,TAACGAGG,iTru5_120_E,CGTCTTCA,NYU_BMS_Melanoma_13059,pool1,EP790023A01 +1,EP657386A01,EP657386A01,NYU_BMS_Melanoma_13059_P4,B16,iTru7_104_05,ATGGTTGC,iTru5_121_E,CTCAAGCT,NYU_BMS_Melanoma_13059,pool2,EP657386A01 +1,EP805337A01,EP805337A01,NYU_BMS_Melanoma_13059_P4,D16,iTru7_104_06,CCTATACC,iTru5_122_E,CTGCCATA,NYU_BMS_Melanoma_13059,pool1,EP805337A01 +1,EP927458A04,EP927458A04,NYU_BMS_Melanoma_13059_P4,F16,iTru7_104_07,TTAGGTCG,iTru5_123_E,CTTGCTAG,NYU_BMS_Melanoma_13059,pool2,EP927458A04 +1,AP173299B04,AP173299B04,NYU_BMS_Melanoma_13059_P4,H16,iTru7_104_08,GCAAGATC,iTru5_124_E,GTCTGCAA,NYU_BMS_Melanoma_13059,pool1,AP173299B04 +1,EP768164A02,EP768164A02,NYU_BMS_Melanoma_13059_P4,J16,iTru7_104_09,AGAGCCTT,iTru5_113_F,GCTACTCT,NYU_BMS_Melanoma_13059,pool2,EP768164A02 +1,EP886422A01,EP886422A01,NYU_BMS_Melanoma_13059_P4,L16,iTru7_104_10,GCAATGGA,iTru5_114_F,TACAGAGC,NYU_BMS_Melanoma_13059,pool1,EP886422A01 +1,AP103463B01,AP103463B01,NYU_BMS_Melanoma_13059_P4,N16,iTru7_104_11,CTGGAGTA,iTru5_115_F,GGTCGTAT,NYU_BMS_Melanoma_13059,pool2,AP103463B01 +1,AP744361A02,AP744361A02,NYU_BMS_Melanoma_13059_P4,P16,iTru7_104_12,GAACATCG,iTru5_116_F,GTCGTTAC,NYU_BMS_Melanoma_13059,pool1,AP744361A02 +1,AP065292B01,AP065292B01,NYU_BMS_Melanoma_13059_P4,B18,iTru7_105_01,GCACAACT,iTru5_117_F,TTCACGGA,NYU_BMS_Melanoma_13059,pool2,AP065292B01 +1,SP257517A04,SP257517A04,NYU_BMS_Melanoma_13059_P4,D18,iTru7_105_02,TTCTCTCG,iTru5_118_F,TGCTTGCT,NYU_BMS_Melanoma_13059,pool1,SP257517A04 +1,EP790021A04,EP790021A04,NYU_BMS_Melanoma_13059_P4,F18,iTru7_105_03,AACGGTCA,iTru5_119_F,TCTTACGG,NYU_BMS_Melanoma_13059,pool2,EP790021A04 +1,EP675075A04,EP675075A04,NYU_BMS_Melanoma_13059_P4,H18,iTru7_105_04,ACAGACCT,iTru5_120_F,TCCTCATG,NYU_BMS_Melanoma_13059,pool1,EP675075A04 +1,SP388683A02,SP388683A02,NYU_BMS_Melanoma_13059_P4,J18,iTru7_105_05,TCTCTTCC,iTru5_121_F,GATGTCGA,NYU_BMS_Melanoma_13059,pool2,SP388683A02 +1,SP232309A01,SP232309A01,NYU_BMS_Melanoma_13059_P4,L18,iTru7_105_06,AGTGTTGG,iTru5_122_F,GAAGTGCT,NYU_BMS_Melanoma_13059,pool1,SP232309A01 +1,EP899038A04,EP899038A04,NYU_BMS_Melanoma_13059_P4,N18,iTru7_105_07,TGGCATGT,iTru5_123_F,TCACTCGA,NYU_BMS_Melanoma_13059,pool2,EP899038A04 +1,EP636802A01,EP636802A01,NYU_BMS_Melanoma_13059_P4,P18,iTru7_105_08,AGAAGCGT,iTru5_124_F,ACGCAGTA,NYU_BMS_Melanoma_13059,pool1,EP636802A01 +1,AP046327B02,AP046327B02,NYU_BMS_Melanoma_13059_P4,B20,iTru7_105_09,AGCGGAAT,iTru5_113_G,ATCTCCTG,NYU_BMS_Melanoma_13059,pool2,AP046327B02 +1,EP905975A04,EP905975A04,NYU_BMS_Melanoma_13059_P4,D20,iTru7_105_10,TAACCGGT,iTru5_114_G,ATGTGGAC,NYU_BMS_Melanoma_13059,pool1,EP905975A04 +1,SP410796A02,SP410796A02,NYU_BMS_Melanoma_13059_P4,F20,iTru7_105_11,CATGGAAC,iTru5_115_G,CAAGCCAA,NYU_BMS_Melanoma_13059,pool2,SP410796A02 +1,EP784608A01,EP784608A01,NYU_BMS_Melanoma_13059_P4,H20,iTru7_105_12,ATGGTCCA,iTru5_116_G,CAGACGTT,NYU_BMS_Melanoma_13059,pool1,EP784608A01 +1,EP808105A01,EP808105A01,NYU_BMS_Melanoma_13059_P4,J20,iTru7_106_01,CTTCTGAG,iTru5_117_G,CATACTCG,NYU_BMS_Melanoma_13059,pool2,EP808105A01 +1,SP331134A04,SP331134A04,NYU_BMS_Melanoma_13059_P4,L20,iTru7_106_02,AACCGAAG,iTru5_118_G,CCTGTCAA,NYU_BMS_Melanoma_13059,pool1,SP331134A04 +1,EP718688A01,EP718688A01,NYU_BMS_Melanoma_13059_P4,N20,iTru7_106_03,TTCGTACC,iTru5_119_G,CGAGTTAG,NYU_BMS_Melanoma_13059,pool2,EP718688A01 +1,SP232270A02,SP232270A02,NYU_BMS_Melanoma_13059_P4,P20,iTru7_106_04,CTGTTAGG,iTru5_120_G,CTAACCTG,NYU_BMS_Melanoma_13059,pool1,SP232270A02 +1,EP970001A01,EP970001A01,NYU_BMS_Melanoma_13059_P4,B22,iTru7_106_05,CACAAGTC,iTru5_121_G,CTCCTAGT,NYU_BMS_Melanoma_13059,pool2,EP970001A01 +1,EP001624B01,EP001624B01,NYU_BMS_Melanoma_13059_P4,D22,iTru7_106_06,TCTTGACG,iTru5_122_G,CTGTACCA,NYU_BMS_Melanoma_13059,pool1,EP001624B01 +1,EP868682A01,EP868682A01,NYU_BMS_Melanoma_13059_P4,F22,iTru7_106_07,CGTCTTGT,iTru5_123_G,GCTACAAC,NYU_BMS_Melanoma_13059,pool2,EP868682A01 +1,EP927462A02,EP927462A02,NYU_BMS_Melanoma_13059_P4,H22,iTru7_106_08,CGTGATCA,iTru5_124_G,GTTCTTCG,NYU_BMS_Melanoma_13059,pool1,EP927462A02 +1,C3,C3,NYU_BMS_Melanoma_13059_P4,J22,iTru7_106_09,CCAAGTTG,iTru5_113_H,GAGAGTAC,NYU_BMS_Melanoma_13059,pool2,C3 +1,EP890158A02,EP890158A02,NYU_BMS_Melanoma_13059_P4,L22,iTru7_106_10,GTACCTTG,iTru5_114_H,GACACAGT,NYU_BMS_Melanoma_13059,pool1,EP890158A02 +1,EP023801B04,EP023801B04,NYU_BMS_Melanoma_13059_P4,N22,iTru7_106_11,GACTATGC,iTru5_115_H,TTGCTTGG,NYU_BMS_Melanoma_13059,pool2,EP023801B04 +1,EP400447B04,EP400447B04,NYU_BMS_Melanoma_13059_P4,P22,iTru7_106_12,TGGATCAC,iTru5_116_H,GTAGTACC,NYU_BMS_Melanoma_13059,pool1,EP400447B04 +1,EP385379B01,EP385379B01,NYU_BMS_Melanoma_13059_P4,B24,iTru7_107_01,CTCTGGTT,iTru5_117_H,TTCGGCTA,NYU_BMS_Melanoma_13059,pool2,EP385379B01 +1,EP385387B01,EP385387B01,NYU_BMS_Melanoma_13059_P4,D24,iTru7_107_02,GTTCATGG,iTru5_118_H,TGCACTTG,NYU_BMS_Melanoma_13059,pool1,EP385387B01 +1,EP385384B01,EP385384B01,NYU_BMS_Melanoma_13059_P4,F24,iTru7_107_03,GCTGTAAG,iTru5_119_H,TAGAACGC,NYU_BMS_Melanoma_13059,pool2,EP385384B01 +1,SP754514A04,SP754514A04,NYU_BMS_Melanoma_13059_P4,H24,iTru7_107_04,GTCGAAGA,iTru5_120_H,GATTGTCC,NYU_BMS_Melanoma_13059,pool1,SP754514A04 +1,SP415025A01,SP415025A01,NYU_BMS_Melanoma_13059_P4,J24,iTru7_107_05,GAGCTCAA,iTru5_121_H,GATGCTAC,NYU_BMS_Melanoma_13059,pool2,SP415025A01 +1,SP415023A02,SP415023A02,NYU_BMS_Melanoma_13059_P4,L24,iTru7_107_06,TGAACCTG,iTru5_122_H,GAACGGTT,NYU_BMS_Melanoma_13059,pool1,SP415023A02 +1,EP400448B04,EP400448B04,NYU_BMS_Melanoma_13059_P4,N24,iTru7_107_07,CCGACTAT,iTru5_123_H,CTCTTGTC,NYU_BMS_Melanoma_13059,pool2,EP400448B04 +1,EP479894B04,EP479894B04,NYU_BMS_Melanoma_13059_P4,P24,iTru7_107_08,AGCTAACC,iTru5_124_H,AACGCCTT,NYU_BMS_Melanoma_13059,pool1,EP479894B04,,,,,,,,,,, +,,,,,,,,,,, +[Bioinformatics],,,,,,,,,,, +Sample_Project,QiitaID,BarcodesAreRC,ForwardAdapter,ReverseAdapter,HumanFiltering,library_construction_protocol,experiment_design_description,,,, +NYU_BMS_Melanoma_13059,13059,False,AACC,GGTT,False,Nextera,Equipment,,,, +Feist_11661,11661,False,AACC,GGTT,FALSE,Nextera,Equipment,,,, +Gerwick_6123,6123,False,AACC,GGTT,tRuE,Nextera,Equipment,,,, +,,,,,,,,,,, +[Contact],,,,,,,,,,, +Email,Sample_Project,,,,,,,,,, +test@lol.com,Feist_11661,,,,,,,,,, +,,,,,,,,,,, diff --git a/tests/data/bad-sample-sheet-metagenomics.csv b/tests/data/bad-sample-sheet-metagenomics.csv new file mode 100644 index 00000000..38b5490f --- /dev/null +++ b/tests/data/bad-sample-sheet-metagenomics.csv @@ -0,0 +1,816 @@ +[Header],,,,,,,,,,, +IEMFileVersion,4,,,,,,,,,, +SheetType,standard_metag,,,,,,,,,, +SheetVersion,100,,,,,,,,,, +Investigator Name,Knight,,,,,,,,,, +Experiment Name,RKL0042,,,,,,,,,, +Date,2020-02-26,,,,,,,,,, +Workflow,GenerateFASTQ,,,,,,,,,, +Application,FASTQ Only,,,,,,,,,, +Assay,Metagenomics,,,,,,,,,, +Description,,,,,,,,,,, +Chemistry,Default,,,,,,,,,, +,,,,,,,,,,, +[Reads],,,,,,,,,,, +150,,,,,,,,,,, +150,,,,,,,,,,, +,,,,,,,,,,, +[Settings],,,,,,,,,,, +ReverseComplement,0,,,,,,,,,, +,,,,,,,,,,, +[Data],,,,,,,,,,, +Lane,Sample_ID,Sample_Name,Sample_Plate,well_id_384,I7_Index_ID,index,I5_Index_ID,index2,Sample_Project,syndna_pool_number,Well_description +1,CDPH-SAL__Salmonella__Typhi__MDL-143,CDPH-SAL..Salmonella..Typhi..MDL-143,Feist_11661_P40,A1,iTru7_107_07,CCGACTAT,iTru5_01_A,ACCGACAA,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-143 +1,CDPH-SAL_Salmonella_Typhi_MDL-144,CDPH-SAL.Salmonella.Typhi.MDL-144,Feist_11661_P40,C1,iTru7_107_08,CCGACTAT,iTru5_02_A,CTTCGCAA,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-144 +1,CDPH-SAL_Salmonella_Typhi_MDL-145,CDPH-SAL.Salmonella.Typhi.MDL-145,Feist_11661_P40,E1,iTru7_107_09,GCCTTGTT,iTru5_03_A,AACACCAC,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-145 +1,CDPH-SAL_Salmonella_Typhi_MDL-146,CDPH-SAL.Salmonella.Typhi.MDL-146,Feist_11661_P40,G1,iTru7_107_10,AACTTGCC,iTru5_04_A,CGTATCTC,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-146 +1,CDPH-SAL_Salmonella_Typhi_MDL-147,CDPH-SAL.Salmonella.Typhi.MDL-147,Feist_11661_P40,I1,iTru7_107_11,CAATGTGG,iTru5_05_A,GGTACGAA,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-147 +1,CDPH-SAL_Salmonella_Typhi_MDL-148,CDPH-SAL.Salmonella.Typhi.MDL-148,Feist_11661_P40,K1,iTru7_107_12,AAGGCTGA,iTru5_06_A,CGATCGAT,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-148 +1,CDPH-SAL_Salmonella_Typhi_MDL-149,CDPH-SAL.Salmonella.Typhi.MDL-149,Feist_11661_P40,M1,iTru7_108_01,TTACCGAG,iTru5_07_A,AAGACACC,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-149 +1,CDPH-SAL_Salmonella_Typhi_MDL-150,CDPH-SAL.Salmonella.Typhi.MDL-150,Feist_11661_P40,O1,iTru7_108_02,GTCCTAAG,iTru5_08_A,CATCTGCT,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-150 +1,CDPH-SAL_Salmonella_Typhi_MDL-151,CDPH-SAL.Salmonella.Typhi.MDL-151,Feist_11661_P40,A3,iTru7_108_03,GAAGGTTC,iTru5_09_A,CTCTCAGA,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-151 +1,CDPH-SAL_Salmonella_Typhi_MDL-152,CDPH-SAL.Salmonella.Typhi.MDL-152,Feist_11661_P40,C3,iTru7_108_04,GAAGAGGT,iTru5_10_A,TCGTCTGA,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-152 +1,CDPH-SAL_Salmonella_Typhi_MDL-153,CDPH-SAL.Salmonella.Typhi.MDL-153,Feist_11661_P40,E3,iTru7_108_05,TCTGAGAG,iTru5_11_A,CAATAGCC,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-153 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+1,Pputida_PALE__HGL_Pputida_157,Pputida.PALE.HGL.Pputida.157,Feist_11661_P41,E14,iTru7_205_09,TGACTGAC,iTru5_15_E,TGATAGGC,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_157 +1,Pputida_PALE__HGL_Pputida_158,Pputida.PALE.HGL.Pputida.158,Feist_11661_P41_diluted,G14,iTru7_205_10,CACCTGTT,iTru5_16_E,ATGCGTCA,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_158 +1,Pputida_PALE__HGL_Pputida_159,Pputida.PALE.HGL.Pputida.159,Feist_11661_P41,I14,iTru7_205_11,ATCCGGTA,iTru5_17_E,CAGCATAC,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_159 +1,Pputida_PALE__HGL_Pputida_160,Pputida.PALE.HGL.Pputida.160,Feist_11661_P41,K14,iTru7_205_12,ATCTGTCC,iTru5_18_E,AAGTGCAG,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_160 +1,Pputida_PALE__HGL_Pputida_161,Pputida.PALE.HGL.Pputida.161,Feist_11661_P41_diluted,M14,iTru7_206_01,CCAAGACT,iTru5_19_E,GTATTCCG,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_161 +1,Pputida_PALE__HGL_Pputida_162,Pputida.PALE.HGL.Pputida.162,Feist_11661_P41_diluted,O14,iTru7_206_02,ATGGCGAA,iTru5_20_E,GTGATCCA,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_162 +1,Pputida_PALE__HGL_Pputida_163,Pputida.PALE.HGL.Pputida.163,Feist_11661_P41_diluted,A16,iTru7_206_03,GGTAGTGT,iTru5_21_E,TATGGCAC,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_163 +1,Pputida_PALE__HGL_Pputida_164,Pputida.PALE.HGL.Pputida.164,Feist_11661_P41,C16,iTru7_206_04,TCGCTGTT,iTru5_22_E,ACCATAGG,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_164 +1,Pputida_PALE__HGL_Pputida_165,Pputida.PALE.HGL.Pputida.165,Feist_11661_P41_diluted,E16,iTru7_206_05,AACGTGGA,iTru5_23_E,CTCCAATC,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_165 +1,Pputida_PALE__HGL_Pputida_166,Pputida.PALE.HGL.Pputida.166,Feist_11661_P41,G16,iTru7_206_06,AACGACGT,iTru5_24_E,AGATACGG,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_166 +1,Pputida_PALE__HGL_Pputida_167,Pputida.PALE.HGL.Pputida.167,Feist_11661_P41,I16,iTru7_206_07,AACAGGAC,iTru5_13_F,TCGATGAC,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_167 +1,Pputida_PALE__HGL_Pputida_168,Pputida.PALE.HGL.Pputida.168,Feist_11661_P41,K16,iTru7_206_08,AAGCGCAT,iTru5_14_F,CCAACACT,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_168 +1,Pputida_PALE__HGL_Pputida_169,Pputida.PALE.HGL.Pputida.169,Feist_11661_P41,M16,iTru7_206_09,CACTGACA,iTru5_15_F,CTTCACTG,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_169 +1,Pputida_PALE__HGL_Pputida_170,Pputida.PALE.HGL.Pputida.170,Feist_11661_P41,O16,iTru7_206_10,AGGTCACT,iTru5_16_F,CGATGTTC,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_170 +1,Pputida_PALE__HGL_Pputida_171,Pputida.PALE.HGL.Pputida.171,Feist_11661_P41,A18,iTru7_206_11,GTCACTGT,iTru5_17_F,ACCGGTTA,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_171 +1,Pputida_PALE__HGL_Pputida_172,Pputida.PALE.HGL.Pputida.172,Feist_11661_P41,C18,iTru7_206_12,ATGCCAAC,iTru5_18_F,CTTACAGC,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_172 +1,Pputida_PALE__HGL_Pputida_173,Pputida.PALE.HGL.Pputida.173,Feist_11661_P41,E18,iTru7_207_01,CACGTTGT,iTru5_19_F,TGGCTCTT,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_173 +1,Pputida_PALE__HGL_Pputida_174,Pputida.PALE.HGL.Pputida.174,Feist_11661_P41_diluted,G18,iTru7_207_02,TATTCCGG,iTru5_20_F,AAGACCGT,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_174 +1,Pputida_PALE__HGL_Pputida_175,Pputida.PALE.HGL.Pputida.175,Feist_11661_P41,I18,iTru7_207_03,TGCTTCCA,iTru5_21_F,GGACATCA,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_175 +1,Pputida_PALE__HGL_Pputida_176,Pputida.PALE.HGL.Pputida.176,Feist_11661_P41_diluted,K18,iTru7_207_04,GTCTAGGT,iTru5_22_F,TTGGTGCA,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_176 +1,JM-Metabolic__GN0_2005,JM-Metabolic.GN0.2005,Feist_11661_P41,M18,iTru7_207_05,GTTCAACC,iTru5_23_F,AAGCGTTC,Feist_11661,pool1,JM-Metabolic__GN0_2005 +1,JM-Metabolic__GN0_2007,JM-Metabolic.GN0.2007,Feist_11661_P41,O18,iTru7_207_06,CGCAATCT,iTru5_24_F,ACTCTCCA,Feist_11661,pool2,JM-Metabolic__GN0_2007 +1,JM-Metabolic__GN0_2009,JM-Metabolic.GN0.2009,Feist_11661_P41,A20,iTru7_207_07,TTAAGCGG,iTru5_13_G,GAACCTTC,Feist_11661,pool1,JM-Metabolic__GN0_2009 +1,JM-Metabolic__GN0_2094,JM-Metabolic.GN0.2094,Feist_11661_P41_diluted,C20,iTru7_207_08,TGCTTGGT,iTru5_14_G,GGAACATG,Feist_11661,pool2,JM-Metabolic__GN0_2094 +1,JM-Metabolic__GN0_2099,JM-Metabolic.GN0.2099,Feist_11661_P41_diluted,E20,iTru7_207_09,ACACACTC,iTru5_15_G,GCCTATGT,Feist_11661,pool1,JM-Metabolic__GN0_2099 +1,JM-Metabolic__GN0_2148,JM-Metabolic.GN0.2148,Feist_11661_P41_diluted,G20,iTru7_207_10,CCACTTCT,iTru5_16_G,CCGTAACT,Feist_11661,pool2,JM-Metabolic__GN0_2148 +1,JM-Metabolic__GN0_2165,JM-Metabolic.GN0.2165,Feist_11661_P41_diluted,I20,iTru7_207_11,TTGGTCTC,iTru5_17_G,CGGATCAA,Feist_11661,pool1,JM-Metabolic__GN0_2165 +1,JM-Metabolic__GN0_2169,JM-Metabolic.GN0.2169,Feist_11661_P41,K20,iTru7_207_12,CTCATCAG,iTru5_18_G,CCACATTG,Feist_11661,pool2,JM-Metabolic__GN0_2169 +1,JM-Metabolic__GN0_2172,JM-Metabolic.GN0.2172,Feist_11661_P41,M20,iTru7_208_01,ATGACGTC,iTru5_19_G,CTCTATCG,Feist_11661,pool1,JM-Metabolic__GN0_2172 +1,JM-Metabolic__GN0_2175,JM-Metabolic.GN0.2175,Feist_11661_P41,O20,iTru7_208_02,AACCTTGG,iTru5_20_G,TGTGTCAG,Feist_11661,pool2,JM-Metabolic__GN0_2175 +1,JM-Metabolic__GN0_2183,JM-Metabolic.GN0.2183,Feist_11661_P41_diluted,A22,iTru7_208_03,GTCTTGCA,iTru5_21_G,CGCAACTA,Feist_11661,pool1,JM-Metabolic__GN0_2183 +1,JM-Metabolic__GN0_2215,JM-Metabolic.GN0.2215,Feist_11661_P41_diluted,C22,iTru7_208_04,CAAGTGCA,iTru5_22_G,GATCAGAC,Feist_11661,pool2,JM-Metabolic__GN0_2215 +1,JM-Metabolic__GN0_2254,JM-Metabolic.GN0.2254,Feist_11661_P41_diluted,E22,iTru7_208_05,TCCGAGTT,iTru5_23_G,ATTCCGCT,Feist_11661,pool1,JM-Metabolic__GN0_2254 +1,JM-Metabolic__GN0_2277,JM-Metabolic.GN0.2277,Feist_11661_P41_diluted,G22,iTru7_208_06,ACCTAAGG,iTru5_24_G,ATCCTTCC,Feist_11661,pool2,JM-Metabolic__GN0_2277 +1,JM-Metabolic__GN0_2290,JM-Metabolic.GN0.2290,Feist_11661_P41,I22,iTru7_208_07,TTGGACGT,iTru5_13_H,GCTTCACA,Feist_11661,pool1,JM-Metabolic__GN0_2290 +1,JM-Metabolic__GN0_2337,JM-Metabolic.GN0.2337,Feist_11661_P41_diluted,K22,iTru7_208_08,GATAGCGA,iTru5_14_H,CTTCGGTT,Feist_11661,pool2,JM-Metabolic__GN0_2337 +1,JM-Metabolic__GN0_2317,JM-Metabolic.GN0.2317,Feist_11661_P41_diluted,M22,iTru7_208_09,TTGGTGAG,iTru5_15_H,CATGGATC,Feist_11661,pool1,JM-Metabolic__GN0_2317 +1,JM-Metabolic__GN0_2354,JM-Metabolic.GN0.2354,Feist_11661_P41_diluted,O22,iTru7_208_10,AACTGGTG,iTru5_16_H,GTCAACAG,Feist_11661,pool2,JM-Metabolic__GN0_2354 +1,JM-Metabolic__GN0_2375,JM-Metabolic.GN0.2375,Feist_11661_P41_diluted,A24,iTru7_208_11,TAGCCGAA,iTru5_17_H,AATTCCGG,Feist_11661,pool1,JM-Metabolic__GN0_2375 +1,JM-Metabolic__GN0_2380,JM-Metabolic.GN0.2380,Feist_11661_P41_diluted,C24,iTru7_208_12,TGCGAACT,iTru5_18_H,GGCGAATA,Feist_11661,pool2,JM-Metabolic__GN0_2380 +1,JM-Metabolic__GN0_2393,JM-Metabolic.GN0.2393,Feist_11661_P41_diluted,E24,iTru7_209_01,GACTTAGG,iTru5_19_H,AGGAGGTT,Feist_11661,pool1,JM-Metabolic__GN0_2393 +1,JM-Metabolic__GN0_2404,JM-Metabolic.GN0.2404,Feist_11661_P41_diluted,G24,iTru7_209_02,ACACCAGT,iTru5_20_H,ACTCTGAG,Feist_11661,pool2,JM-Metabolic__GN0_2404 +1,5B,5B,Gerwick_tubes,I24,iTru7_209_03,CCTGATTG,iTru5_21_H,GCCTTCTT,Gerwick_6123,pool1,5B +1,6A,6A,Gerwick_tubes,K24,iTru7_209_04,TTGTGTGC,iTru5_22_H,TGGACCAT,Gerwick_6123,pool2,6A +1,BLANK_41_12G,BLANK.41.12G,Feist_11661_P41,M24,iTru7_209_05,TACCACAG,iTru5_23_H,GCATAGTC,Gerwick_6123,pool1,BLANK.41.12G +1,BLANK_41_12H,BLANK.41.12H,Feist_11661_P41,O24,iTru7_209_06,ATTCGAGG,iTru5_24_H,TACACACG,Feist_11661,pool2,BLANK.41.12H +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_14,Deoxyribose.PALE.ALE.MG1655.BOP27.4.14,Feist_11661_P42,B1,iTru7_209_07,GCACGTAA,iTru5_101_A,AACAACCG,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_BOP27_4_14 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_23,Deoxyribose.PALE.ALE.MG1655.BOP27.4.23,Feist_11661_P42,D1,iTru7_209_08,GTGTGACA,iTru5_102_A,AAGCCTGA,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_BOP27_4_23 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_48,Deoxyribose.PALE.ALE.MG1655.BOP27.4.48,Feist_11661_P42,F1,iTru7_209_09,CTGGTTCT,iTru5_103_A,AAGGACCA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_BOP27_4_48 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_6_21,Deoxyribose.PALE.ALE.MG1655.BOP27.6.21,Feist_11661_P42,H1,iTru7_209_10,ACTGTGTC,iTru5_104_A,ACAACGTG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_BOP27_6_21 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_6_35,Deoxyribose.PALE.ALE.MG1655.BOP27.6.35,Feist_11661_P42,J1,iTru7_209_11,CCATACGT,iTru5_105_A,ACGAACGA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_BOP27_6_35 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_13,Deoxyribose.PALE.ALE.MG1655.BOP27.10.13,Feist_11661_P42,L1,iTru7_209_12,GGTACTAC,iTru5_106_A,ACGTCCAA,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_BOP27_10_13 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_28,Deoxyribose.PALE.ALE.MG1655.BOP27.10.28,Feist_11661_P42,N1,iTru7_210_01,CAGTCCAA,iTru5_107_A,ACTGGTGT,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_BOP27_10_28 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_51,Deoxyribose.PALE.ALE.MG1655.BOP27.10.51,Feist_11661_P42,P1,iTru7_210_02,TCGTAGTC,iTru5_108_A,AGATCGTC,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_BOP27_10_51 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_19,Deoxyribose.PALE.ALE.MG1655.Lib4.18.19,Feist_11661_P42,B3,iTru7_210_03,TCGAGTGA,iTru5_109_A,AGCGAGAT,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_18_19 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_59,Deoxyribose.PALE.ALE.MG1655.Lib4.18.59,Feist_11661_P42,D3,iTru7_210_04,TGTAGCCA,iTru5_110_A,AGGATAGC,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_18_59 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_35,Deoxyribose.PALE.ALE.MG1655.Lib4.18.35,Feist_11661_P42,F3,iTru7_210_05,TGCAGGTA,iTru5_111_A,AGGTGTTG,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_18_35 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_16,Deoxyribose.PALE.ALE.MG1655.Lib4.20.16,Feist_11661_P42,H3,iTru7_210_06,CTAGGTGA,iTru5_112_A,AGTCTTGG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_20_16 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_43,Deoxyribose.PALE.ALE.MG1655.Lib4.20.43,Feist_11661_P42,J3,iTru7_210_07,CTCCATGT,iTru5_101_B,GGTTGGTA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_20_43 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_71,Deoxyribose.PALE.ALE.MG1655.Lib4.20.71,Feist_11661_P42,L3,iTru7_210_08,CTTACAGC,iTru5_102_B,GGAGGAAT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_20_71 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_16,Deoxyribose.PALE.ALE.MG1655.Lib4.22.16,Feist_11661_P42,N3,iTru7_210_09,CGTATTCG,iTru5_103_B,GTAAGGTG,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_22_16 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_28,Deoxyribose.PALE.ALE.MG1655.Lib4.22.28,Feist_11661_P42,P3,iTru7_210_10,ATTCTGGC,iTru5_104_B,GGTGTACA,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_22_28 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_52,Deoxyribose.PALE.ALE.MG1655.Lib4.22.52,Feist_11661_P42,B5,iTru7_210_11,TACCAGGA,iTru5_105_B,GGATGTAG,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_22_52 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_9,Deoxyribose.PALE.ALE.MG1655.Lib4.24.9,Feist_11661_P42,D5,iTru7_210_12,TACATCGG,iTru5_106_B,GTCCTGTT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_24_9 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_24,Deoxyribose.PALE.ALE.MG1655.Lib4.24.24,Feist_11661_P42,F5,iTru7_301_01,GTGGTGTT,iTru5_107_B,GTACCACA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_24_24 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_52,Deoxyribose.PALE.ALE.MG1655.Lib4.24.52,Feist_11661_P42,H5,iTru7_301_02,CGCATGAT,iTru5_108_B,GATCTCAG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_24_52 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_6,Deoxyribose.PALE.ALE.MG1655.Lib4.26.6,Feist_11661_P42,J5,iTru7_301_03,AGTCGACA,iTru5_109_B,GAGCTCTA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_26_6 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_27,Deoxyribose.PALE.ALE.MG1655.Lib4.26.27,Feist_11661_P42,L5,iTru7_301_04,GTGAGCTT,iTru5_110_B,TACTAGCG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_26_27 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_69,Deoxyribose.PALE.ALE.MG1655.Lib4.26.69,Feist_11661_P42,N5,iTru7_301_05,GACATTCC,iTru5_111_B,GCACACAA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_26_69 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_13,Deoxyribose.PALE.ALE.MG1655.Lib4.28.13,Feist_11661_P42,P5,iTru7_301_06,AGTTCGTC,iTru5_112_B,GAATCACC,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_28_13 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_28,Deoxyribose.PALE.ALE.MG1655.Lib4.28.28,Feist_11661_P42,B7,iTru7_301_07,TAATGCCG,iTru5_101_C,AACAGCGA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_28_28 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_53,Deoxyribose.PALE.ALE.MG1655.Lib4.28.53,Feist_11661_P42,D7,iTru7_301_08,CGACCATT,iTru5_102_C,AAGCGACT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_28_53 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_7,Deoxyribose.PALE.ALE.MG1655.Lib4.30.7,Feist_11661_P42,F7,iTru7_301_09,CTGAAGCT,iTru5_103_C,AAGGCGTA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_30_7 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_22,Deoxyribose.PALE.ALE.MG1655.Lib4.30.22,Feist_11661_P42,H7,iTru7_301_10,TTGAGGCA,iTru5_104_C,ACACCGAT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_30_22 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_60,Deoxyribose.PALE.ALE.MG1655.Lib4.30.60,Feist_11661_P42,J7,iTru7_301_11,GATCGAGT,iTru5_105_C,ACGAATCC,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_30_60 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_6,Deoxyribose.PALE.ALE.MG1655.Lib4.32.6,Feist_11661_P42,L7,iTru7_301_12,ATACTCCG,iTru5_106_C,ACTACGGT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_32_6 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_20,Deoxyribose.PALE.ALE.MG1655.Lib4.32.20,Feist_11661_P42,N7,iTru7_302_01,AAGTCCGT,iTru5_107_C,AGAAGCCT,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_32_20 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_56,Deoxyribose.PALE.ALE.MG1655.Lib4.32.56,Feist_11661_P42,P7,iTru7_302_02,TAGCGTCT,iTru5_108_C,AGATTGCG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_32_56 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.1.24,Feist_11661_P42,B9,iTru7_302_03,TGACGCAT,iTru5_109_C,AGCGTGTA,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_24 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.1.57,Feist_11661_P42,D9,iTru7_302_04,AGCGTGTT,iTru5_110_C,AGGCTGAA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_57 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.1.69,Feist_11661_P42,F9,iTru7_302_05,TGCACCAA,iTru5_111_C,AGGTTCCT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_69 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.3.23,Feist_11661_P42,H9,iTru7_302_06,ATCACACG,iTru5_112_C,AGTGACCT,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.3.50,Feist_11661_P42,J9,iTru7_302_07,ATGCCTGT,iTru5_101_D,GGTTAGCT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_50 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.3.61,Feist_11661_P42,L9,iTru7_302_08,ACCTGACT,iTru5_102_D,GTAGCGTA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_61 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.5.22,Feist_11661_P42,N9,iTru7_302_09,GCTTCGAA,iTru5_103_D,GGACTACT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_22 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.5.36,Feist_11661_P42,P9,iTru7_302_10,CGGTCATA,iTru5_104_D,TGGTTCGA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_36 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.5.46,Feist_11661_P42,B11,iTru7_302_11,GTTAGACG,iTru5_105_D,GGAGTCTT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_46 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.7.23,Feist_11661_P42,D11,iTru7_302_12,TCTAACGC,iTru5_106_D,GGATTCAC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.7.41,Feist_11661_P42,F11,iTru7_303_01,ATAGCGGT,iTru5_107_D,TCGGATTC,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_41 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.7.51,Feist_11661_P42,H11,iTru7_303_02,GGACCTAT,iTru5_108_D,GAGCAATC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_51 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.17.25,Feist_11661_P42,J11,iTru7_303_03,CGATGCTT,iTru5_109_D,GATCCACT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.17.58,Feist_11661_P42,L11,iTru7_303_04,GAGCTTGT,iTru5_110_D,GAAGACTG,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_58 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.17.64,Feist_11661_P42,N11,iTru7_303_05,GTGAAGTG,iTru5_111_D,GCCACTTA,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_64 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.19.25,Feist_11661_P42,P11,iTru7_303_06,GAGTGGTT,iTru5_112_D,TCCATTGC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.19.55,Feist_11661_P42,B13,iTru7_303_07,TGATACGC,iTru5_101_E,AACAGTCC,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_55 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.19.63,Feist_11661_P42,D13,iTru7_303_08,AGCAGATG,iTru5_102_E,AAGCTCAC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_63 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.21.23,Feist_11661_P42,F13,iTru7_303_09,CCAGTGTT,iTru5_103_E,AAGTCCTC,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.21.46,Feist_11661_P42,H13,iTru7_303_10,ATTCCTCC,iTru5_104_E,ACACTCTG,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_46 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.21.51,Feist_11661_P42,J13,iTru7_303_11,CTAACTCG,iTru5_105_E,ACGGTACA,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_51 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.29.25,Feist_11661_P42,L13,iTru7_303_12,GATGAGAC,iTru5_106_E,ACTCCTAC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.29.49,Feist_11661_P42,N13,iTru7_304_01,TCAGGCTT,iTru5_107_E,AGAGGATG,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_49 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.29.57,Feist_11661_P42,P13,iTru7_304_02,GTTCTCGT,iTru5_108_E,AGCCGTAA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_57 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.31.24,Feist_11661_P42,B15,iTru7_304_03,ATCGATCG,iTru5_109_E,AGCTTCAG,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_24 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.31.42,Feist_11661_P42,D15,iTru7_304_04,CCTCAGTT,iTru5_110_E,AGGTAGGA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_42 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.31.62,Feist_11661_P42,F15,iTru7_304_05,ACTGCTAG,iTru5_111_E,AGTACACG,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_62 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.33.21,Feist_11661_P42,H15,iTru7_304_06,TCCGTGAA,iTru5_112_E,AGTGCATC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_21 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.33.41,Feist_11661_P42,J15,iTru7_304_07,GGATTCGT,iTru5_101_F,TTGGACTG,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_41 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.33.50,Feist_11661_P42,L15,iTru7_304_08,GGTCAGAT,iTru5_102_F,GTCGATTG,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_50 +1,JM-Metabolic__GN02514,JM-Metabolic.GN02514,Feist_11661_P42,N15,iTru7_304_09,TCGTGGAT,iTru5_103_F,GGCATTCT,Feist_11661,pool1,JM-Metabolic__GN02514 +1,JM-Metabolic__GN02529,JM-Metabolic.GN02529,Feist_11661_P42_diluted,P15,iTru7_304_10,CGTGTGTA,iTru5_104_F,TGGTATCC,Feist_11661,pool2,JM-Metabolic__GN02529 +1,JM-Metabolic__GN02531,JM-Metabolic.GN02531,Feist_11661_P42_diluted,B17,iTru7_304_11,GTGTCTGA,iTru5_105_F,GGCAAGTT,Feist_11661,pool1,JM-Metabolic__GN02531 +1,JM-Metabolic__GN02567,JM-Metabolic.GN02567,Feist_11661_P42,D17,iTru7_304_12,GAATCGTG,iTru5_106_F,GTCTGAGT,Feist_11661,pool2,JM-Metabolic__GN02567 +1,JM-Metabolic__GN02590,JM-Metabolic.GN02590,Feist_11661_P42_diluted,F17,iTru7_305_01,GCGATAGT,iTru5_107_F,TCTACGCA,Feist_11661,pool1,JM-Metabolic__GN02590 +1,JM-Metabolic__GN02657,JM-Metabolic.GN02657,Feist_11661_P42_diluted,H17,iTru7_305_02,GGCTATTG,iTru5_108_F,GAGGCATT,Feist_11661,pool2,JM-Metabolic__GN02657 +1,JM-Metabolic__GN02748,JM-Metabolic.GN02748,Feist_11661_P42,J17,iTru7_305_03,AGTTACGG,iTru5_109_F,GCTAAGGA,Feist_11661,pool1,JM-Metabolic__GN02748 +1,JM-Metabolic__GN02766,JM-Metabolic.GN02766,Feist_11661_P42_diluted,L17,iTru7_305_04,CGTACGAA,iTru5_110_F,GCCAGAAT,Feist_11661,pool2,JM-Metabolic__GN02766 +1,JM-Metabolic__GN02769,JM-Metabolic.GN02769,Feist_11661_P42_diluted,N17,iTru7_305_05,ACCACGAT,iTru5_111_F,TAAGTGGC,Feist_11661,pool1,JM-Metabolic__GN02769 +1,JM-Metabolic__GN02787,JM-Metabolic.GN02787,Feist_11661_P42_diluted,P17,iTru7_305_06,GATTACCG,iTru5_112_F,GCAATGAG,Feist_11661,pool2,JM-Metabolic__GN02787 +1,JM-Metabolic__GN03132,JM-Metabolic.GN03132,Feist_11661_P42,B19,iTru7_305_07,GAGATACG,iTru5_101_G,AACTGAGG,Feist_11661,pool1,JM-Metabolic__GN03132 +1,JM-Metabolic__GN03218,JM-Metabolic.GN03218,Feist_11661_P42_diluted,D19,iTru7_305_08,CGACGTTA,iTru5_102_G,AAGGAAGG,Feist_11661,pool2,JM-Metabolic__GN03218 +1,JM-Metabolic__GN03252,JM-Metabolic.GN03252,Feist_11661_P42_diluted,F19,iTru7_305_09,GAGATGTC,iTru5_103_G,AATGGTCG,Feist_11661,pool1,JM-Metabolic__GN03252 +1,JM-Metabolic__GN03409,JM-Metabolic.GN03409,Feist_11661_P42_diluted,H19,iTru7_305_10,GATTGGAG,iTru5_104_G,ACAGCAAG,Feist_11661,pool2,JM-Metabolic__GN03409 +1,JM-Metabolic__GN04014,JM-Metabolic.GN04014,Feist_11661_P42_diluted,J19,iTru7_305_11,GCAATTCG,iTru5_105_G,ACGTATGG,Feist_11661,pool1,JM-Metabolic__GN04014 +1,JM-Metabolic__GN04094,JM-Metabolic.GN04094,Feist_11661_P42_diluted,L19,iTru7_305_12,CGTCAATG,iTru5_106_G,ACTGCACT,Feist_11661,pool2,JM-Metabolic__GN04094 +1,JM-Metabolic__GN04255,JM-Metabolic.GN04255,Feist_11661_P42_diluted,N19,iTru7_401_01,ATGCACGA,iTru5_107_G,AGAGTCCA,Feist_11661,pool1,JM-Metabolic__GN04255 +1,JM-Metabolic__GN04306,JM-Metabolic.GN04306,Feist_11661_P42_diluted,P19,iTru7_401_02,ATCGCCAT,iTru5_108_G,AGCCTATC,Feist_11661,pool2,JM-Metabolic__GN04306 +1,JM-Metabolic__GN04428,JM-Metabolic.GN04428,Feist_11661_P42_diluted,B21,iTru7_401_03,TCTCGCAA,iTru5_109_G,AGGAACAC,Feist_11661,pool1,JM-Metabolic__GN04428 +1,JM-Metabolic__GN04488,JM-Metabolic.GN04488,Feist_11661_P42_diluted,D21,iTru7_401_04,ACGACAGA,iTru5_110_G,AGGTCTGT,Feist_11661,pool2,JM-Metabolic__GN04488 +1,JM-Metabolic__GN04540,JM-Metabolic.GN04540,Feist_11661_P42_diluted,F21,iTru7_401_05,TTACGGCT,iTru5_111_G,AGTATGCC,Feist_11661,pool1,JM-Metabolic__GN04540 +1,JM-Metabolic__GN04563,JM-Metabolic.GN04563,Feist_11661_P42_diluted,H21,iTru7_401_06,GAGGACTT,iTru5_112_G,AGTTCGCA,Feist_11661,pool2,JM-Metabolic__GN04563 +1,JM-Metabolic__GN04612,JM-Metabolic.GN04612,Feist_11661_P42_diluted,J21,iTru7_401_07,GGCATACT,iTru5_101_H,TGGAAGCA,Feist_11661,pool1,JM-Metabolic__GN04612 +1,JM-Metabolic__GN04665,JM-Metabolic.GN04665,Feist_11661_P42_diluted,L21,iTru7_401_08,CGTAGGTT,iTru5_102_H,GTCAGTCA,Feist_11661,pool2,JM-Metabolic__GN04665 +1,JM-Metabolic__GN04682,JM-Metabolic.GN04682,Feist_11661_P42_diluted,N21,iTru7_401_09,ATATGCGC,iTru5_103_H,GTAACCGA,Feist_11661,pool1,JM-Metabolic__GN04682 +1,JM-Metabolic__GN05002,JM-Metabolic.GN05002,Feist_11661_P42_diluted,P21,iTru7_401_10,GGATGTAG,iTru5_104_H,GTTATGGC,Feist_11661,pool2,JM-Metabolic__GN05002 +1,JM-Metabolic__GN05109,JM-Metabolic.GN05109,Feist_11661_P42_diluted,B23,iTru7_401_11,CCTGTCAT,iTru5_105_H,GTAAGCAC,Feist_11661,pool1,JM-Metabolic__GN05109 +1,JM-Metabolic__GN05128,JM-Metabolic.GN05128,Feist_11661_P42_diluted,D23,iTru7_401_12,TGCTCATG,iTru5_106_H,GGAATGTC,Feist_11661,pool2,JM-Metabolic__GN05128 +1,JM-Metabolic__GN05367,JM-Metabolic.GN05367,Feist_11661_P42_diluted,F23,iTru7_402_01,TGAAGACG,iTru5_107_H,GAGAAGGT,Feist_11661,pool1,JM-Metabolic__GN05367 +1,JM-Metabolic__GN05377,JM-Metabolic.GN05377,Feist_11661_P42_diluted,H23,iTru7_402_02,GTTACGCA,iTru5_108_H,GAGTAGAG,Feist_11661,pool2,JM-Metabolic__GN05377 +1,7A,7A,Gerwick_tubes,J23,iTru7_402_03,ACTCAGAC,iTru5_109_H,GCATTGGT,Gerwick_6123,pool1,7A +1,8A,8A,Gerwick_tubes,L23,iTru7_402_04,GTCCACAT,iTru5_110_H,TCCAGCAA,Gerwick_6123,pool2,8A +1,BLANK_42_12G,BLANK.42.12G,Feist_11661_P42,N23,iTru7_402_05,CGCTAGTA,iTru5_111_H,GAATCCGT,Feist_11661,pool1,BLANK.42.12G +1,BLANK_42_12H,BLANK.42.12H,Feist_11661_P42,P23,iTru7_402_06,GAATCCGA,iTru5_112_H,TACATCGG,Feist_11661,pool2,BLANK.42.12H +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0326,Feist_11661_P43,B2,iTru7_402_07,GAGACGAT,iTru5_113_A,ATAACGCC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0326 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0327,Feist_11661_P43,D2,iTru7_402_08,TAAGTGGC,iTru5_114_A,ATGACAGG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0327 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0328,Feist_11661_P43,F2,iTru7_402_09,ACTGAGGT,iTru5_115_A,CAACACAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0328 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0329,Feist_11661_P43,H2,iTru7_402_10,TGTACCGT,iTru5_116_A,CACCAGTT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0329 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0330,Feist_11661_P43,J2,iTru7_402_11,AGCAAGCA,iTru5_117_A,CAGAGTGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0330 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0352,Feist_11661_P43,L2,iTru7_402_12,TCTCGTGT,iTru5_118_A,CCGATGTA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0352 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0353,Feist_11661_P43,N2,iTru7_115_01,CAAGGTCT,iTru5_119_A,CCTTCCAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0353 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0354,Feist_11661_P43,P2,iTru7_115_02,TAGACGTG,iTru5_120_A,CGGTAATC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0354 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0355,Feist_11661_P43,B4,iTru7_115_03,TGAGCTAG,iTru5_121_A,CTAGGTTG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0355 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0356,Feist_11661_P43,D4,iTru7_115_04,CTGACACA,iTru5_122_A,CTCGGTAA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0356 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0357,Feist_11661_P43,F4,iTru7_115_05,ACGGTCTT,iTru5_123_A,CTGTGGTA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0357 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0364,Feist_11661_P43,H4,iTru7_115_06,GCTGTTGT,iTru5_124_A,GTACGATC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0364 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0366,Feist_11661_P43,J4,iTru7_115_07,CACTAGCT,iTru5_113_B,TCTGTCGT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0366 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0367,Feist_11661_P43,L4,iTru7_115_08,TGGTACAG,iTru5_114_B,GAATGGCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0367 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0368,Feist_11661_P43,N4,iTru7_115_09,AGCACTTC,iTru5_115_B,GTGTGTTC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0368 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0369,Feist_11661_P43,P4,iTru7_115_10,GCATACAG,iTru5_116_B,GGTTGAAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0369 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0370,Feist_11661_P43,B6,iTru7_115_11,CTTAGGAC,iTru5_117_B,GGCTCAAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0370 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0371,Feist_11661_P43,D6,iTru7_211_01,GCTTCTTG,iTru5_118_B,TTCGCCAT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0371 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0372,Feist_11661_P43,F6,iTru7_101_01,ACGTTACC,iTru5_119_B,GTCCTTGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0372 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0373,Feist_11661_P43,H6,iTru7_101_02,CTGTGTTG,iTru5_120_B,TAACGTCG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0373 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0374,Feist_11661_P43,J6,iTru7_101_03,TGAGGTGT,iTru5_121_B,GAGACCAA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0374 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0375,Feist_11661_P43,L6,iTru7_101_04,GATCCATG,iTru5_122_B,GATCAAGG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0375 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0376,Feist_11661_P43,N6,iTru7_101_05,GCCTATCA,iTru5_123_B,GCAACCAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0376 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0377,Feist_11661_P43,P6,iTru7_101_06,AACAACCG,iTru5_124_B,AAGGAGAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0377 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0378,Feist_11661_P43,B8,iTru7_101_07,ACTCGTTG,iTru5_113_C,ATCGGAGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0378 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0380,Feist_11661_P43,D8,iTru7_101_08,CCTATGGT,iTru5_114_C,ATGCGCTT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0380 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0381,Feist_11661_P43,F8,iTru7_101_09,TGTACACC,iTru5_115_C,CAACCGTA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0381 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0382,Feist_11661_P43,H8,iTru7_101_10,GTATGCTG,iTru5_116_C,CACTTCAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0382 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0383,Feist_11661_P43,J8,iTru7_101_11,TGATGTCC,iTru5_117_C,CAGCTAGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0383 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0384,Feist_11661_P43,L8,iTru7_101_12,GTCCTTCT,iTru5_118_C,CCGTTATG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0384 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0385,Feist_11661_P43,N8,iTru7_102_01,ATAAGGCG,iTru5_119_C,CGAACAAC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0385 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0386,Feist_11661_P43,P8,iTru7_102_02,CTTACCTG,iTru5_120_C,CGTAGATG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0386 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0387,Feist_11661_P43,B10,iTru7_102_03,CGTTGCAA,iTru5_121_C,CTATGCCT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0387 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0388,Feist_11661_P43,D10,iTru7_102_04,GATTCAGC,iTru5_122_C,CTGATGAG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0388 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0389,Feist_11661_P43,F10,iTru7_102_05,TCACGTTC,iTru5_123_C,CTTCCTTC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0389 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0390,Feist_11661_P43,H10,iTru7_102_06,TGTGCGTT,iTru5_124_C,GTCTCATC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0390 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0391,Feist_11661_P43,J10,iTru7_102_07,TAGTTGCG,iTru5_113_D,GCGCATAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0391 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0392,Feist_11661_P43,L10,iTru7_102_08,AAGAGCCA,iTru5_114_D,GAAGATCC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0392 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0393,Feist_11661_P43,N10,iTru7_102_09,ACAGCTCA,iTru5_115_D,GTTGGCAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0393 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0394,Feist_11661_P43,P10,iTru7_102_10,GTTAAGGC,iTru5_116_D,GTGAATGG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0394 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0395,Feist_11661_P43,B12,iTru7_102_11,AAGCCACA,iTru5_117_D,GTATCGAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0395 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0396,Feist_11661_P43,D12,iTru7_102_12,ACACGGTT,iTru5_118_D,TGCAAGAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0396 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0397,Feist_11661_P43,F12,iTru7_103_01,CAGCGATT,iTru5_119_D,GAGTGTGT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0397 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0398,Feist_11661_P43,H12,iTru7_103_02,TAGTGACC,iTru5_120_D,TAAGCGCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0398 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0399,Feist_11661_P43,J12,iTru7_103_03,CGAGACTA,iTru5_121_D,TAGCAGGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0399 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0400,Feist_11661_P43,L12,iTru7_103_04,GACATGGT,iTru5_122_D,GACTACGA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0400 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0401,Feist_11661_P43,N12,iTru7_103_05,GCATGTCT,iTru5_123_D,GACGTCAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0401 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0402,Feist_11661_P43,P12,iTru7_103_06,ACTCCATC,iTru5_124_D,AAGAGGCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0402 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0403,Feist_11661_P43,B14,iTru7_103_07,TGTGACTG,iTru5_113_E,ATCGTCTC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0403 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0404,Feist_11661_P43,D14,iTru7_103_08,CGAAGAAC,iTru5_114_E,ATGGCGAT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0404 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0405,Feist_11661_P43,F14,iTru7_103_09,GGTGTCTT,iTru5_115_E,CAAGAAGC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0405 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0406,Feist_11661_P43,H14,iTru7_103_10,AAGAAGGC,iTru5_116_E,CAGAACTG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0406 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0407,Feist_11661_P43,J14,iTru7_103_11,AGGTTCGA,iTru5_117_E,CAGGTAAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0407 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0408,Feist_11661_P43,L14,iTru7_103_12,CATGTTCC,iTru5_118_E,CCTACCTA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0408 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0409,Feist_11661_P43,N14,iTru7_104_01,GTGCCATA,iTru5_119_E,CGAAGTCA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0409 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0417,Feist_11661_P43,P14,iTru7_104_02,CCTTGTAG,iTru5_120_E,CGTCTTCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0417 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0418,Feist_11661_P43,B16,iTru7_104_03,GCTGGATT,iTru5_121_E,CTCAAGCT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0418 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0419,Feist_11661_P43,D16,iTru7_104_04,TAACGAGG,iTru5_122_E,CTGCCATA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0419 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0420,Feist_11661_P43,F16,iTru7_104_05,ATGGTTGC,iTru5_123_E,CTTGCTAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0420 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0421,Feist_11661_P43,H16,iTru7_104_06,CCTATACC,iTru5_124_E,GTCTGCAA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0421 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0473,Feist_11661_P43,J16,iTru7_104_07,TTAGGTCG,iTru5_113_F,GCTACTCT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0473 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0474,Feist_11661_P43,L16,iTru7_104_08,GCAAGATC,iTru5_114_F,TACAGAGC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0474 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0483,Feist_11661_P43,N16,iTru7_104_09,AGAGCCTT,iTru5_115_F,GGTCGTAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0483 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0484,Feist_11661_P43,P16,iTru7_104_10,GCAATGGA,iTru5_116_F,GTCGTTAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0484 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0485,Feist_11661_P43,B18,iTru7_104_11,CTGGAGTA,iTru5_117_F,TTCACGGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0485 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0486,Feist_11661_P43,D18,iTru7_104_12,GAACATCG,iTru5_118_F,TGCTTGCT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0486 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0516,Feist_11661_P43,F18,iTru7_105_01,GCACAACT,iTru5_119_F,TCTTACGG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0516 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0517,Feist_11661_P43,H18,iTru7_105_02,TTCTCTCG,iTru5_120_F,TCCTCATG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0517 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0518,Feist_11661_P43,J18,iTru7_105_03,AACGGTCA,iTru5_121_F,GATGTCGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0518 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0519,Feist_11661_P43,L18,iTru7_105_04,ACAGACCT,iTru5_122_F,GAAGTGCT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0519 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0520,Feist_11661_P43,N18,iTru7_105_05,TCTCTTCC,iTru5_123_F,TCACTCGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0520 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0521,Feist_11661_P43,P18,iTru7_105_06,AGTGTTGG,iTru5_124_F,ACGCAGTA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0521 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0522,Feist_11661_P43,B20,iTru7_105_07,TGGCATGT,iTru5_113_G,ATCTCCTG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0522 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0523,Feist_11661_P43,D20,iTru7_105_08,AGAAGCGT,iTru5_114_G,ATGTGGAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0523 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0524,Feist_11661_P43,F20,iTru7_105_09,AGCGGAAT,iTru5_115_G,CAAGCCAA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0524 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0525,Feist_11661_P43,H20,iTru7_105_10,TAACCGGT,iTru5_116_G,CAGACGTT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0525 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624,JM-MEC.Staphylococcus.aureusstrain.BERTI-R08624,Feist_11661_P43,J20,iTru7_105_11,CATGGAAC,iTru5_117_G,CATACTCG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R08624 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704,JM-MEC.Staphylococcus.aureusstrain.BERTI-R08704,Feist_11661_P43,L20,iTru7_105_12,ATGGTCCA,iTru5_118_G,CCTGTCAA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R08704 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727,JM-MEC.Staphylococcus.aureusstrain.BERTI-R10727,Feist_11661_P43,N20,iTru7_106_01,CTTCTGAG,iTru5_119_G,CGAGTTAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R10727 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11044,Feist_11661_P43,P20,iTru7_106_02,AACCGAAG,iTru5_120_G,CTAACCTG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R11044 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11078,Feist_11661_P43,B22,iTru7_106_03,TTCGTACC,iTru5_121_G,CTCCTAGT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R11078 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11101,Feist_11661_P43,D22,iTru7_106_04,CTGTTAGG,iTru5_122_G,CTGTACCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R11101 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11102,Feist_11661_P43,F22,iTru7_106_05,CACAAGTC,iTru5_123_G,GCTACAAC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R11102 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11103,Feist_11661_P43,H22,iTru7_106_06,TCTTGACG,iTru5_124_G,GTTCTTCG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R11103 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11135,Feist_11661_P43,J22,iTru7_106_07,CGTCTTGT,iTru5_113_H,GAGAGTAC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R11135 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11153,Feist_11661_P43,L22,iTru7_106_08,CGTGATCA,iTru5_114_H,GACACAGT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R11153 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11154,Feist_11661_P43,N22,iTru7_106_09,CCAAGTTG,iTru5_115_H,TTGCTTGG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R11154 +1,JM-Metabolic__GN02424,JM-Metabolic.GN02424,Feist_11661_P43,P22,iTru7_106_10,GTACCTTG,iTru5_116_H,GTAGTACC,Feist_11661,pool2,JM-Metabolic__GN02424 +1,JM-Metabolic__GN02446,JM-Metabolic.GN02446,Feist_11661_P43,B24,iTru7_106_11,GACTATGC,iTru5_117_H,TTCGGCTA,Feist_11661,pool1,JM-Metabolic__GN02446 +1,JM-Metabolic__GN02449,JM-Metabolic.GN02449,Feist_11661_P43,D24,iTru7_106_12,TGGATCAC,iTru5_118_H,TGCACTTG,Feist_11661,pool2,JM-Metabolic__GN02449 +1,JM-Metabolic__GN02487,JM-Metabolic.GN02487,Feist_11661_P43_diluted,F24,iTru7_107_01,CTCTGGTT,iTru5_119_H,TAGAACGC,Feist_11661,pool1,JM-Metabolic__GN02487 +1,JM-Metabolic__GN02501,JM-Metabolic.GN02501,Feist_11661_P43,H24,iTru7_107_02,GTTCATGG,iTru5_120_H,GATTGTCC,Feist_11661,pool2,JM-Metabolic__GN02501 +1,ISB,ISB,Gerwick_tubes,J24,iTru7_107_03,GCTGTAAG,iTru5_121_H,GATGCTAC,Gerwick_6123,pool1,ISB +1,GFR,GFR,Gerwick_tubes,L24,iTru7_107_04,GTCGAAGA,iTru5_122_H,GAACGGTT,Gerwick_6123,pool2,GFR +1,BLANK_43_12G,BLANK.43.12G,Feist_11661_P43,N24,iTru7_107_05,GAGCTCAA,iTru5_123_H,CTCTTGTC,Feist_11661,pool1,BLANK.43.12G +1,BLANK_43_12H,BLANK.43.12H,Feist_11661_P43,P24,iTru7_107_06,TGAACCTG,iTru5_124_H,AACGCCTT,Feist_11661,pool2,BLANK.43.12H +1,RMA_KHP_rpoS_Mage_Q97D,RMA.KHP.rpoS.Mage.Q97D,,,12,CTTGTAAT,U1,TATAGCGT,Feist_11661,pool1,RMA_KHP_rpoS Mage Q97D +1,RMA_KHP_rpoS_Mage_Q97L,RMA.KHP.rpoS.Mage.Q97L,,,13,AGTCAAAT,U1,TATAGCGT,Feist_11661,pool2,RMA_KHP_rpoS Mage Q97L +1,RMA_KHP_rpoS_Mage_Q97N,RMA.KHP.rpoS.Mage.Q97N,,,14,AGTTCCAT,U1,TATAGCGT,Feist_11661,pool1,RMA_KHP_rpoS Mage Q97N +1,RMA_KHP_rpoS_Mage_Q97E,RMA.KHP.rpoS.Mage.Q97E,,,15,ATGTCAAT,U1,TATAGCGT,Feist_11661,pool2,RMA_KHP_rpoS Mage Q97E +1,JBI_KHP_HGL_021,JBI.KHP.HGL.021,,,1,ATCACGAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_021 +1,JBI_KHP_HGL_022,JBI.KHP.HGL.022,,,2,CGATGTAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_022 +1,JBI_KHP_HGL_023,JBI.KHP.HGL.023,,,3,TTAGGCAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_023 +1,JBI_KHP_HGL_024,JBI.KHP.HGL.024,,,4,TGACCAAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_024 +1,JBI_KHP_HGL_025,JBI.KHP.HGL.025,,,5,ACAGTGAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_025 +1,JBI_KHP_HGL_026,JBI.KHP.HGL.026,,,6,GCCAATAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_026 +1,JBI_KHP_HGL_027,JBI.KHP.HGL.027,,,7,CAGATCAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_027 +1,JBI_KHP_HGL_028_Amitesh_soxR,JBI.KHP.HGL.028.Amitesh.soxR,,,8,ACTTGAAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_028_Amitesh_soxR +1,JBI_KHP_HGL_029_Amitesh_oxyR,JBI.KHP.HGL.029.Amitesh.oxyR,,,9,GATCAGAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_029_Amitesh_oxyR +1,JBI_KHP_HGL_030_Amitesh_soxR_oxyR,JBI.KHP.HGL.030.Amitesh.soxR.oxyR,,,10,TAGCTTAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_030_Amitesh_soxR_oxyR +1,JBI_KHP_HGL_031_Amitesh_rpoS,JBI.KHP.HGL.031.Amitesh.rpoS,,,11,GGCTACAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_031_Amitesh_rpoS +1,BLANK1_1A,BLANK1.1A,NYU_BMS_Melanoma_13059_P1,A1,iTru7_107_09,GCCTTGTT,iTru5_01_A,ACCGACAA,NYU_BMS_Melanoma_13059,pool2,BLANK1.1A +1,BLANK1_1B,BLANK1.1B,NYU_BMS_Melanoma_13059_P1,C1,iTru7_107_10,AACTTGCC,iTru5_02_A,CTTCGCAA,NYU_BMS_Melanoma_13059,pool1,BLANK1.1B +1,BLANK1_1C,BLANK1.1C,NYU_BMS_Melanoma_13059_P1,E1,iTru7_107_11,CAATGTGG,iTru5_03_A,AACACCAC,NYU_BMS_Melanoma_13059,pool2,BLANK1.1C +1,BLANK1_1D,BLANK1.1D,NYU_BMS_Melanoma_13059_P1,G1,iTru7_107_12,AAGGCTGA,iTru5_04_A,CGTATCTC,NYU_BMS_Melanoma_13059,pool1,BLANK1.1D +1,BLANK1_1E,BLANK1.1E,NYU_BMS_Melanoma_13059_P1,I1,iTru7_108_01,TTACCGAG,iTru5_05_A,GGTACGAA,NYU_BMS_Melanoma_13059,pool2,BLANK1.1E +1,BLANK1_1F,BLANK1.1F,NYU_BMS_Melanoma_13059_P1,K1,iTru7_108_02,GTCCTAAG,iTru5_06_A,CGATCGAT,NYU_BMS_Melanoma_13059,pool1,BLANK1.1F +1,BLANK1_1G,BLANK1.1G,NYU_BMS_Melanoma_13059_P1,M1,iTru7_108_03,GAAGGTTC,iTru5_07_A,AAGACACC,NYU_BMS_Melanoma_13059,pool2,BLANK1.1G +1,BLANK1_1H,BLANK1.1H,NYU_BMS_Melanoma_13059_P1,O1,iTru7_108_04,GAAGAGGT,iTru5_08_A,CATCTGCT,NYU_BMS_Melanoma_13059,pool1,BLANK1.1H +1,AP581451B02,AP581451B02,NYU_BMS_Melanoma_13059_P1,A3,iTru7_108_05,TCTGAGAG,iTru5_09_A,CTCTCAGA,NYU_BMS_Melanoma_13059,pool2,AP581451B02 +1,EP256645B01,EP256645B01,NYU_BMS_Melanoma_13059_P1,C3,iTru7_108_06,ACCGCATA,iTru5_10_A,TCGTCTGA,NYU_BMS_Melanoma_13059,pool1,EP256645B01 +1,EP112567B02,EP112567B02,NYU_BMS_Melanoma_13059_P1,E3,iTru7_108_07,GAAGTACC,iTru5_11_A,CAATAGCC,NYU_BMS_Melanoma_13059,pool2,EP112567B02 +1,EP337425B01,EP337425B01,NYU_BMS_Melanoma_13059_P1,G3,iTru7_108_08,CAGGTATC,iTru5_12_A,CATTCGTC,NYU_BMS_Melanoma_13059,pool1,EP337425B01 +1,LP127890A01,LP127890A01,NYU_BMS_Melanoma_13059_P1,I3,iTru7_108_09,TCTCTAGG,iTru5_01_B,AGTGGCAA,NYU_BMS_Melanoma_13059,pool2,LP127890A01 +1,EP159692B04,EP159692B04,NYU_BMS_Melanoma_13059_P1,K3,iTru7_108_10,AAGCACTG,iTru5_02_B,GTGGTATG,NYU_BMS_Melanoma_13059,pool1,EP159692B04 +1,EP987683A01,EP987683A01,NYU_BMS_Melanoma_13059_P1,M3,iTru7_108_11,CCAAGCAA,iTru5_03_B,TGAGCTGT,NYU_BMS_Melanoma_13059,pool2,EP987683A01 +1,AP959450A03,AP959450A03,NYU_BMS_Melanoma_13059_P1,O3,iTru7_108_12,TGTTCGAG,iTru5_04_B,CGTCAAGA,NYU_BMS_Melanoma_13059,pool1,AP959450A03 +1,SP464350A04,SP464350A04,NYU_BMS_Melanoma_13059_P1,A5,iTru7_109_01,CTCGTCTT,iTru5_05_B,AAGCATCG,NYU_BMS_Melanoma_13059,pool2,SP464350A04 +1,C9,C9,NYU_BMS_Melanoma_13059_P1,C5,iTru7_109_02,CGAACTGT,iTru5_06_B,TACTCCAG,NYU_BMS_Melanoma_13059,pool1,C9 +1,ep256643b01,ep256643b01,NYU_BMS_Melanoma_13059_P1,E5,iTru7_109_03,CATTCGGT,iTru5_07_B,GATACCTG,NYU_BMS_Melanoma_13059,pool2,ep256643b01 +1,EP121011B01,EP121011B01,NYU_BMS_Melanoma_13059_P1,G5,iTru7_109_04,TCGGTTAC,iTru5_08_B,ACCTCTTC,NYU_BMS_Melanoma_13059,pool1,EP121011B01 +1,AP616837B04,AP616837B04,NYU_BMS_Melanoma_13059_P1,I5,iTru7_109_05,AAGTCGAG,iTru5_09_B,ACGGACTT,NYU_BMS_Melanoma_13059,pool2,AP616837B04 +1,SP506933A04,SP506933A04,NYU_BMS_Melanoma_13059_P1,K5,iTru7_109_06,TATCGGTC,iTru5_10_B,CATGTGTG,NYU_BMS_Melanoma_13059,pool1,SP506933A04 +1,EP159695B01,EP159695B01,NYU_BMS_Melanoma_13059_P1,M5,iTru7_109_07,TATTCGCC,iTru5_11_B,TGCCTCAA,NYU_BMS_Melanoma_13059,pool2,EP159695B01 +1,EP256644B01,EP256644B01,NYU_BMS_Melanoma_13059_P1,O5,iTru7_109_08,GTATTGGC,iTru5_12_B,ATCTGACC,NYU_BMS_Melanoma_13059,pool1,EP256644B01 +1,SP511289A02,SP511289A02,NYU_BMS_Melanoma_13059_P1,A7,iTru7_109_09,AGTCGCTT,iTru5_01_C,CACAGACT,NYU_BMS_Melanoma_13059,pool2,SP511289A02 +1,EP305735B04,EP305735B04,NYU_BMS_Melanoma_13059_P1,C7,iTru7_109_10,TGGCACTA,iTru5_02_C,CACTGTAG,NYU_BMS_Melanoma_13059,pool1,EP305735B04 +1,SP415030A01,SP415030A01,NYU_BMS_Melanoma_13059_P1,E7,iTru7_109_11,GGTTGTCA,iTru5_03_C,CACAGGAA,NYU_BMS_Melanoma_13059,pool2,SP415030A01 +1,AP549681B02,AP549681B02,NYU_BMS_Melanoma_13059_P1,G7,iTru7_109_12,AACCTCCT,iTru5_04_C,CCATGAAC,NYU_BMS_Melanoma_13059,pool1,AP549681B02 +1,AP549678B01,AP549678B01,NYU_BMS_Melanoma_13059_P1,I7,iTru7_110_01,ATGACCAG,iTru5_05_C,GCCAATAC,NYU_BMS_Melanoma_13059,pool2,AP549678B01 +1,EP260544B04,EP260544B04,NYU_BMS_Melanoma_13059_P1,K7,iTru7_110_02,AACCGTTC,iTru5_06_C,AGCTACCA,NYU_BMS_Melanoma_13059,pool1,EP260544B04 +1,EP202452B01,EP202452B01,NYU_BMS_Melanoma_13059_P1,M7,iTru7_110_03,TCCAATCG,iTru5_07_C,AACCGAAC,NYU_BMS_Melanoma_13059,pool2,EP202452B01 +1,EP282276B04,EP282276B04,NYU_BMS_Melanoma_13059_P1,O7,iTru7_110_04,CTGCACTT,iTru5_08_C,ATCGCAAC,NYU_BMS_Melanoma_13059,pool1,EP282276B04 +1,SP531696A04,SP531696A04,NYU_BMS_Melanoma_13059_P1,A9,iTru7_110_05,CGCTTAAC,iTru5_09_C,GTTGCTGT,NYU_BMS_Melanoma_13059,pool2,SP531696A04 +1,SP515443A04,SP515443A04,NYU_BMS_Melanoma_13059_P1,C9,iTru7_110_06,CACCACTA,iTru5_10_C,TCTAGTCC,NYU_BMS_Melanoma_13059,pool1,SP515443A04 +1,SP515763A04,SP515763A04,NYU_BMS_Melanoma_13059_P1,E9,iTru7_110_07,ACAGCAAC,iTru5_11_C,GACGAACT,NYU_BMS_Melanoma_13059,pool2,SP515763A04 +1,EP184255B04,EP184255B04,NYU_BMS_Melanoma_13059_P1,G9,iTru7_110_08,GGAAGGAT,iTru5_12_C,TTCGTACG,NYU_BMS_Melanoma_13059,pool1,EP184255B04 +1,SP503615A02,SP503615A02,NYU_BMS_Melanoma_13059_P1,I9,iTru7_110_09,GGCGTTAT,iTru5_01_D,CGACACTT,NYU_BMS_Melanoma_13059,pool2,SP503615A02 +1,EP260543B04,EP260543B04,NYU_BMS_Melanoma_13059_P1,K9,iTru7_110_10,CTGTTGAC,iTru5_02_D,AGACGCTA,NYU_BMS_Melanoma_13059,pool1,EP260543B04 +1,EP768748A04,EP768748A04,NYU_BMS_Melanoma_13059_P1,M9,iTru7_110_11,GTCATCGA,iTru5_03_D,TGACAACC,NYU_BMS_Melanoma_13059,pool2,EP768748A04 +1,AP309872B03,AP309872B03,NYU_BMS_Melanoma_13059_P1,O9,iTru7_110_12,TGACTTCG,iTru5_04_D,GGTACTTC,NYU_BMS_Melanoma_13059,pool1,AP309872B03 +1,AP568785B04,AP568785B04,NYU_BMS_Melanoma_13059_P1,A11,iTru7_111_01,CGATAGAG,iTru5_05_D,CTGTATGC,NYU_BMS_Melanoma_13059,pool2,AP568785B04 +1,EP721390A04,EP721390A04,NYU_BMS_Melanoma_13059_P1,C11,iTru7_111_02,TTCGTTGG,iTru5_06_D,TCGACAAG,NYU_BMS_Melanoma_13059,pool1,EP721390A04 +1,EP940013A01,EP940013A01,NYU_BMS_Melanoma_13059_P1,E11,iTru7_111_03,TGGAGAGT,iTru5_07_D,GCTGAATC,NYU_BMS_Melanoma_13059,pool2,EP940013A01 +1,EP291979B04,EP291979B04,NYU_BMS_Melanoma_13059_P1,G11,iTru7_111_04,TCAGACGA,iTru5_08_D,AGTTGTGC,NYU_BMS_Melanoma_13059,pool1,EP291979B04 +1,EP182065B04,EP182065B04,NYU_BMS_Melanoma_13059_P1,I11,iTru7_111_05,GACGAATG,iTru5_09_D,TGTCGACT,NYU_BMS_Melanoma_13059,pool2,EP182065B04 +1,EP128904B02,EP128904B02,NYU_BMS_Melanoma_13059_P1,K11,iTru7_111_06,CATGAGGA,iTru5_10_D,AAGGCTCT,NYU_BMS_Melanoma_13059,pool1,EP128904B02 +1,EP915769A04,EP915769A04,NYU_BMS_Melanoma_13059_P1,M11,iTru7_111_07,CGGTTGTT,iTru5_11_D,CCTAACAG,NYU_BMS_Melanoma_13059,pool2,EP915769A04 +1,SP464352A03,SP464352A03,NYU_BMS_Melanoma_13059_P1,O11,iTru7_111_08,TCCGTATG,iTru5_12_D,AAGACGAG,NYU_BMS_Melanoma_13059,pool1,SP464352A03 +1,SP365864A04,SP365864A04,NYU_BMS_Melanoma_13059_P1,A13,iTru7_111_09,TGTGGTAC,iTru5_01_E,GACTTGTG,NYU_BMS_Melanoma_13059,pool2,SP365864A04 +1,SP511294A04,SP511294A04,NYU_BMS_Melanoma_13059_P1,C13,iTru7_111_10,AGAACGAG,iTru5_02_E,CAACTCCA,NYU_BMS_Melanoma_13059,pool1,SP511294A04 +1,EP061002B01,EP061002B01,NYU_BMS_Melanoma_13059_P1,E13,iTru7_111_11,CTTCGTTC,iTru5_03_E,TGTTCCGT,NYU_BMS_Melanoma_13059,pool2,EP061002B01 +1,SP410793A01,SP410793A01,NYU_BMS_Melanoma_13059_P1,G13,iTru7_111_12,CCAATAGG,iTru5_04_E,ACCGCTAT,NYU_BMS_Melanoma_13059,pool1,SP410793A01 +1,SP232077A04,SP232077A04,NYU_BMS_Melanoma_13059_P1,I13,iTru7_112_01,ACCATCCA,iTru5_05_E,CTTAGGAC,NYU_BMS_Melanoma_13059,pool2,SP232077A04 +1,EP128910B01,EP128910B01,NYU_BMS_Melanoma_13059_P1,K13,iTru7_112_02,CACACATG,iTru5_06_E,TATGACCG,NYU_BMS_Melanoma_13059,pool1,EP128910B01 +1,AP531397B04,AP531397B04,NYU_BMS_Melanoma_13059_P1,M13,iTru7_112_03,CTTGTCGA,iTru5_07_E,AGCTAGTG,NYU_BMS_Melanoma_13059,pool2,AP531397B04 +1,EP043583B01,EP043583B01,NYU_BMS_Melanoma_13059_P1,O13,iTru7_112_04,AGTCTCAC,iTru5_08_E,GAACGAAG,NYU_BMS_Melanoma_13059,pool1,EP043583B01 +1,EP230245B01,EP230245B01,NYU_BMS_Melanoma_13059_P1,A15,iTru7_112_05,AGTTGGCT,iTru5_09_E,CGTCTAAC,NYU_BMS_Melanoma_13059,pool2,EP230245B01 +1,EP606652B04,EP606652B04,NYU_BMS_Melanoma_13059_P1,C15,iTru7_112_06,CCGGAATT,iTru5_10_E,AACCAGAG,NYU_BMS_Melanoma_13059,pool1,EP606652B04 +1,EP207041B01,EP207041B01,NYU_BMS_Melanoma_13059_P1,E15,iTru7_112_07,CAGTGAAG,iTru5_11_E,CGCCTTAT,NYU_BMS_Melanoma_13059,pool2,EP207041B01 +1,EP727972A04,EP727972A04,NYU_BMS_Melanoma_13059_P1,G15,iTru7_112_08,CCTACTGA,iTru5_12_E,CTCGTTCT,NYU_BMS_Melanoma_13059,pool1,EP727972A04 +1,EP291980B04,EP291980B04,NYU_BMS_Melanoma_13059_P1,I15,iTru7_112_09,TGTGAAGC,iTru5_01_F,GTGAGACT,NYU_BMS_Melanoma_13059,pool2,EP291980B04 +1,EP087938B02,EP087938B02,NYU_BMS_Melanoma_13059_P1,K15,iTru7_112_10,GTCTGATC,iTru5_02_F,AACACGCT,NYU_BMS_Melanoma_13059,pool1,EP087938B02 +1,SP471496A04,SP471496A04,NYU_BMS_Melanoma_13059_P1,M15,iTru7_112_11,TTCAGGAG,iTru5_03_F,CCTAGAGA,NYU_BMS_Melanoma_13059,pool2,SP471496A04 +1,SP573823A04,SP573823A04,NYU_BMS_Melanoma_13059_P1,O15,iTru7_112_12,ACGATGAC,iTru5_04_F,TTCCAGGT,NYU_BMS_Melanoma_13059,pool1,SP573823A04 +1,EP393718B01,EP393718B01,NYU_BMS_Melanoma_13059_P1,A17,iTru7_113_01,CGTTATGC,iTru5_05_F,TCAGCCTT,NYU_BMS_Melanoma_13059,pool2,EP393718B01 +1,SP612496A01,SP612496A01,NYU_BMS_Melanoma_13059_P1,C17,iTru7_113_02,GATACTGG,iTru5_06_F,AGCCAACT,NYU_BMS_Melanoma_13059,pool1,SP612496A01 +1,EP032410B02,EP032410B02,NYU_BMS_Melanoma_13059_P1,E17,iTru7_113_03,CTACTTGG,iTru5_07_F,CTAGCTCA,NYU_BMS_Melanoma_13059,pool2,EP032410B02 +1,EP073216B01,EP073216B01,NYU_BMS_Melanoma_13059_P1,G17,iTru7_113_04,CATACCAC,iTru5_08_F,GGAAGAGA,NYU_BMS_Melanoma_13059,pool1,EP073216B01 +1,EP410046B01,EP410046B01,NYU_BMS_Melanoma_13059_P1,I17,iTru7_113_05,ACATTGCG,iTru5_09_F,AACACTGG,NYU_BMS_Melanoma_13059,pool2,EP410046B01 +1,SP561451A04,SP561451A04,NYU_BMS_Melanoma_13059_P1,K17,iTru7_113_06,TGATCGGA,iTru5_10_F,ACTATCGC,NYU_BMS_Melanoma_13059,pool1,SP561451A04 +1,EP320438B01,EP320438B01,NYU_BMS_Melanoma_13059_P1,M17,iTru7_113_07,AAGTGTCG,iTru5_11_F,ACAACAGC,NYU_BMS_Melanoma_13059,pool2,EP320438B01 +1,SP612495A04,SP612495A04,NYU_BMS_Melanoma_13059_P1,O17,iTru7_113_08,GAACGCTT,iTru5_12_F,TGTGGCTT,NYU_BMS_Melanoma_13059,pool1,SP612495A04 +1,EP446604B03,EP446604B03,NYU_BMS_Melanoma_13059_P1,A19,iTru7_113_09,TCAAGGAC,iTru5_01_G,GTTCCATG,NYU_BMS_Melanoma_13059,pool2,EP446604B03 +1,EP446602B01,EP446602B01,NYU_BMS_Melanoma_13059_P1,C19,iTru7_113_10,TCAACTGG,iTru5_02_G,TGGATGGT,NYU_BMS_Melanoma_13059,pool1,EP446602B01 +1,EP182243B02,EP182243B02,NYU_BMS_Melanoma_13059_P1,E19,iTru7_113_11,GGTTGATG,iTru5_03_G,GCATAACG,NYU_BMS_Melanoma_13059,pool2,EP182243B02 +1,EP333541B04,EP333541B04,NYU_BMS_Melanoma_13059_P1,G19,iTru7_113_12,AAGGACAC,iTru5_04_G,TCGAACCT,NYU_BMS_Melanoma_13059,pool1,EP333541B04 +1,EP238034B01,EP238034B01,NYU_BMS_Melanoma_13059_P1,I19,iTru7_114_01,TTGATCCG,iTru5_05_G,ACATGCCA,NYU_BMS_Melanoma_13059,pool2,EP238034B01 +1,AP298002B02,AP298002B02,NYU_BMS_Melanoma_13059_P1,K19,iTru7_114_02,GGTGATTC,iTru5_06_G,GATCTTGC,NYU_BMS_Melanoma_13059,pool1,AP298002B02 +1,EP455759B04,EP455759B04,NYU_BMS_Melanoma_13059_P1,M19,iTru7_114_03,GATTGCTC,iTru5_07_G,GTTAAGCG,NYU_BMS_Melanoma_13059,pool2,EP455759B04 +1,EP207042B04,EP207042B04,NYU_BMS_Melanoma_13059_P1,O19,iTru7_114_04,ACCTGGAA,iTru5_08_G,GTCATCGT,NYU_BMS_Melanoma_13059,pool1,EP207042B04 +1,LP128479A01,LP128479A01,NYU_BMS_Melanoma_13059_P1,A21,iTru7_114_05,CATCTACG,iTru5_09_G,TCAGACAC,NYU_BMS_Melanoma_13059,pool2,LP128479A01 +1,LP128476A01,LP128476A01,NYU_BMS_Melanoma_13059_P1,C21,iTru7_114_06,CCGTATCT,iTru5_10_G,GTCCTAAG,NYU_BMS_Melanoma_13059,pool1,LP128476A01 +1,EP316863B03,EP316863B03,NYU_BMS_Melanoma_13059_P1,E21,iTru7_114_07,CGGAATAC,iTru5_11_G,AGACCTTG,NYU_BMS_Melanoma_13059,pool2,EP316863B03 +1,C20,C20,NYU_BMS_Melanoma_13059_P1,G21,iTru7_114_08,CTCCTAGA,iTru5_12_G,AGACATGC,NYU_BMS_Melanoma_13059,pool1,C20 +1,lp127896a01,lp127896a01,NYU_BMS_Melanoma_13059_P1,I21,iTru7_114_09,TGGTAGCT,iTru5_01_H,TAGCTGAG,NYU_BMS_Melanoma_13059,pool2,lp127896a01 +1,SP491907A02,SP491907A02,NYU_BMS_Melanoma_13059_P1,K21,iTru7_114_10,TCGAAGGT,iTru5_02_H,TTCGAAGC,NYU_BMS_Melanoma_13059,pool1,SP491907A02 +1,EP182060B03,EP182060B03,NYU_BMS_Melanoma_13059_P1,M21,iTru7_114_11,ACATAGGC,iTru5_03_H,CAGTGCTT,NYU_BMS_Melanoma_13059,pool2,EP182060B03 +1,EP422407B01,EP422407B01,NYU_BMS_Melanoma_13059_P1,O21,iTru7_114_12,CTCAGAGT,iTru5_04_H,TAGTGCCA,NYU_BMS_Melanoma_13059,pool1,EP422407B01 +1,SP573859A04,SP573859A04,NYU_BMS_Melanoma_13059_P1,A23,iTru7_201_01,CTTGGATG,iTru5_05_H,GATGGAGT,NYU_BMS_Melanoma_13059,pool2,SP573859A04 +1,SP584547A02,SP584547A02,NYU_BMS_Melanoma_13059_P1,C23,iTru7_201_02,CAGTTGGA,iTru5_06_H,CCTCGTTA,NYU_BMS_Melanoma_13059,pool1,SP584547A02 +1,EP182346B04,EP182346B04,NYU_BMS_Melanoma_13059_P1,E23,iTru7_201_03,GATAGGCT,iTru5_07_H,CGATTGGA,NYU_BMS_Melanoma_13059,pool2,EP182346B04 +1,AP668631B04,AP668631B04,NYU_BMS_Melanoma_13059_P1,G23,iTru7_201_04,TTGACAGG,iTru5_08_H,CCAACGAA,NYU_BMS_Melanoma_13059,pool1,AP668631B04 +1,EP451428B04,EP451428B04,NYU_BMS_Melanoma_13059_P1,I23,iTru7_201_05,AGAATGCC,iTru5_09_H,AGAAGGAC,NYU_BMS_Melanoma_13059,pool2,EP451428B04 +1,LP128538A01,LP128538A01,NYU_BMS_Melanoma_13059_P1,K23,iTru7_201_06,CTACATCC,iTru5_10_H,TGACCGTT,NYU_BMS_Melanoma_13059,pool1,LP128538A01 +1,SP490298A02,SP490298A02,NYU_BMS_Melanoma_13059_P1,M23,iTru7_201_07,TCATGGTG,iTru5_11_H,GCGTTAGA,NYU_BMS_Melanoma_13059,pool2,SP490298A02 +1,SP573860A01,SP573860A01,NYU_BMS_Melanoma_13059_P1,O23,iTru7_201_08,TACACGCT,iTru5_12_H,TCTAGGAG,NYU_BMS_Melanoma_13059,pool1,SP573860A01 +1,EP032412B02,EP032412B02,NYU_BMS_Melanoma_13059_P2,A2,iTru7_201_09,TACGGTTG,iTru5_13_A,GGTATAGG,NYU_BMS_Melanoma_13059,pool2,EP032412B02 +1,EP163771B01,EP163771B01,NYU_BMS_Melanoma_13059_P2,C2,iTru7_201_10,GGATACCA,iTru5_14_A,TCCGATCA,NYU_BMS_Melanoma_13059,pool1,EP163771B01 +1,LP169879A01,LP169879A01,NYU_BMS_Melanoma_13059_P2,E2,iTru7_201_11,TCGACATC,iTru5_15_A,CGACCTAA,NYU_BMS_Melanoma_13059,pool2,LP169879A01 +1,EP729433A02,EP729433A02,NYU_BMS_Melanoma_13059_P2,G2,iTru7_201_12,GTTGTAGC,iTru5_16_A,GACATCTC,NYU_BMS_Melanoma_13059,pool1,EP729433A02 +1,EP447940B04,EP447940B04,NYU_BMS_Melanoma_13059_P2,I2,iTru7_202_01,ATACGACC,iTru5_17_A,CCAGTATC,NYU_BMS_Melanoma_13059,pool2,EP447940B04 +1,SP584551A08,SP584551A08,NYU_BMS_Melanoma_13059_P2,K2,iTru7_202_02,TTCCAAGG,iTru5_18_A,ACGCTTCT,NYU_BMS_Melanoma_13059,pool1,SP584551A08 +1,EP216516B04,EP216516B04,NYU_BMS_Melanoma_13059_P2,M2,iTru7_202_03,TTGCAGAC,iTru5_19_A,AACGCACA,NYU_BMS_Melanoma_13059,pool2,EP216516B04 +1,EP023808B02,EP023808B02,NYU_BMS_Melanoma_13059_P2,O2,iTru7_202_04,TGCCATTC,iTru5_20_A,TGATCACG,NYU_BMS_Melanoma_13059,pool1,EP023808B02 +1,BLANK2_2A,BLANK2.2A,NYU_BMS_Melanoma_13059_P2,A4,iTru7_202_05,GATGTGTG,iTru5_21_A,GCGTATCA,NYU_BMS_Melanoma_13059,pool2,BLANK2.2A +1,BLANK2_2B,BLANK2.2B,NYU_BMS_Melanoma_13059_P2,C4,iTru7_202_06,ACTCTCGA,iTru5_22_A,GTGTCCTT,NYU_BMS_Melanoma_13059,pool1,BLANK2.2B +1,BLANK2_2C,BLANK2.2C,NYU_BMS_Melanoma_13059_P2,E4,iTru7_202_07,GAGTCTCT,iTru5_23_A,GGTAACGT,NYU_BMS_Melanoma_13059,pool2,BLANK2.2C +1,BLANK2_2D,BLANK2.2D,NYU_BMS_Melanoma_13059_P2,G4,iTru7_202_08,CAACACCT,iTru5_24_A,CGAGAGAA,NYU_BMS_Melanoma_13059,pool1,BLANK2.2D +1,BLANK2_2E,BLANK2.2E,NYU_BMS_Melanoma_13059_P2,I4,iTru7_202_09,CAGTCTTC,iTru5_13_B,CATTGACG,NYU_BMS_Melanoma_13059,pool2,BLANK2.2E +1,BLANK2_2F,BLANK2.2F,NYU_BMS_Melanoma_13059_P2,K4,iTru7_202_10,GGACTGTT,iTru5_14_B,GGTGATGA,NYU_BMS_Melanoma_13059,pool1,BLANK2.2F +1,BLANK2_2G,BLANK2.2G,NYU_BMS_Melanoma_13059_P2,M4,iTru7_202_11,CTTAGTGG,iTru5_15_B,AACCGTGT,NYU_BMS_Melanoma_13059,pool2,BLANK2.2G +1,BLANK2_2H,BLANK2.2H,NYU_BMS_Melanoma_13059_P2,O4,iTru7_202_12,ATTGCGTG,iTru5_16_B,CCTATTGG,NYU_BMS_Melanoma_13059,pool1,BLANK2.2H +1,SP573843A04,SP573843A04,NYU_BMS_Melanoma_13059_P2,A6,iTru7_203_01,GTAACGAC,iTru5_17_B,TCAGTAGG,NYU_BMS_Melanoma_13059,pool2,SP573843A04 +1,EP683835A01,EP683835A01,NYU_BMS_Melanoma_13059_P2,C6,iTru7_203_02,CTTGCTGT,iTru5_18_B,TATGCGGT,NYU_BMS_Melanoma_13059,pool1,EP683835A01 +1,SP573824A04,SP573824A04,NYU_BMS_Melanoma_13059_P2,E6,iTru7_203_03,GTTGTTCG,iTru5_19_B,ATGCCTAG,NYU_BMS_Melanoma_13059,pool2,SP573824A04 +1,SP335002A04,SP335002A04,NYU_BMS_Melanoma_13059_P2,G6,iTru7_203_04,CGTTGAGT,iTru5_20_B,CTAGCAGT,NYU_BMS_Melanoma_13059,pool1,SP335002A04 +1,SP478193A02,SP478193A02,NYU_BMS_Melanoma_13059_P2,I6,iTru7_203_05,TCGAACCA,iTru5_21_B,AGGTCAAC,NYU_BMS_Melanoma_13059,pool2,SP478193A02 +1,SP232311A04,SP232311A04,NYU_BMS_Melanoma_13059_P2,K6,iTru7_203_06,AGACCGTA,iTru5_22_B,GAACGTGA,NYU_BMS_Melanoma_13059,pool1,SP232311A04 +1,SP415021A02,SP415021A02,NYU_BMS_Melanoma_13059_P2,M6,iTru7_203_07,CAGAGTGT,iTru5_23_B,ATCATGCG,NYU_BMS_Melanoma_13059,pool2,SP415021A02 +1,SP231630A02,SP231630A02,NYU_BMS_Melanoma_13059_P2,O6,iTru7_203_08,GACAAGAG,iTru5_24_B,CAACGAGT,NYU_BMS_Melanoma_13059,pool1,SP231630A02 +1,SP641029A02,SP641029A02,NYU_BMS_Melanoma_13059_P2,A8,iTru7_203_09,GAACACAC,iTru5_13_C,CGCAATGT,NYU_BMS_Melanoma_13059,pool2,SP641029A02 +1,SP232310A04,SP232310A04,NYU_BMS_Melanoma_13059_P2,C8,iTru7_203_10,GCTTAGCT,iTru5_14_C,AACAAGGC,NYU_BMS_Melanoma_13059,pool1,SP232310A04 +1,EP617442B01,EP617442B01,NYU_BMS_Melanoma_13059_P2,E8,iTru7_203_11,GAAGGAAG,iTru5_15_C,ACCATGTC,NYU_BMS_Melanoma_13059,pool2,EP617442B01 +1,EP587478B04,EP587478B04,NYU_BMS_Melanoma_13059_P2,G8,iTru7_203_12,CAGTTCTG,iTru5_16_C,AATCCAGC,NYU_BMS_Melanoma_13059,pool1,EP587478B04 +1,EP447928B04,EP447928B04,NYU_BMS_Melanoma_13059_P2,I8,iTru7_204_01,CAGGAGAT,iTru5_17_C,TTGCAACG,NYU_BMS_Melanoma_13059,pool2,EP447928B04 +1,EP587475B04,EP587475B04,NYU_BMS_Melanoma_13059_P2,K8,iTru7_204_02,GTAGCATC,iTru5_18_C,ACCTTCGA,NYU_BMS_Melanoma_13059,pool1,EP587475B04 +1,EP675042B01,EP675042B01,NYU_BMS_Melanoma_13059_P2,M8,iTru7_204_03,TCGTTCGT,iTru5_19_C,CATACGGA,NYU_BMS_Melanoma_13059,pool2,EP675042B01 +1,EP554513B02,EP554513B02,NYU_BMS_Melanoma_13059_P2,O8,iTru7_204_04,GGCAAGTT,iTru5_20_C,GACCGATA,NYU_BMS_Melanoma_13059,pool1,EP554513B02 +1,EP702221B04,EP702221B04,NYU_BMS_Melanoma_13059_P2,A10,iTru7_204_05,ACCATGTG,iTru5_21_C,AAGCTGGT,NYU_BMS_Melanoma_13059,pool2,EP702221B04 +1,AP568787B02,AP568787B02,NYU_BMS_Melanoma_13059_P2,C10,iTru7_204_06,CAACGGAT,iTru5_22_C,ACACCTCA,NYU_BMS_Melanoma_13059,pool1,AP568787B02 +1,EP054632B01,EP054632B01,NYU_BMS_Melanoma_13059_P2,E10,iTru7_204_07,CAATCGAC,iTru5_23_C,CGGAGTAT,NYU_BMS_Melanoma_13059,pool2,EP054632B01 +1,EP121013B01,EP121013B01,NYU_BMS_Melanoma_13059_P2,G10,iTru7_204_08,GTGTTCCT,iTru5_24_C,CTCGACTT,NYU_BMS_Melanoma_13059,pool1,EP121013B01 +1,EP649418A02,EP649418A02,NYU_BMS_Melanoma_13059_P2,I10,iTru7_204_09,AGGAACCT,iTru5_13_D,ATCCACGA,NYU_BMS_Melanoma_13059,pool2,EP649418A02 +1,EP573313B01,EP573313B01,NYU_BMS_Melanoma_13059_P2,K10,iTru7_204_10,ACCTTCTC,iTru5_14_D,ACAGTTCG,NYU_BMS_Melanoma_13059,pool1,EP573313B01 +1,LP154981A01,LP154981A01,NYU_BMS_Melanoma_13059_P2,M10,iTru7_204_11,CCGTAAGA,iTru5_15_D,ACAAGACG,NYU_BMS_Melanoma_13059,pool2,LP154981A01 +1,AP470859B01,AP470859B01,NYU_BMS_Melanoma_13059_P2,O10,iTru7_204_12,ATCGGTGT,iTru5_16_D,ATCGTGGT,NYU_BMS_Melanoma_13059,pool1,AP470859B01 +1,LP154986A01,LP154986A01,NYU_BMS_Melanoma_13059_P2,A12,iTru7_205_01,AGCTCCTA,iTru5_17_D,AGTCAGGT,NYU_BMS_Melanoma_13059,pool2,LP154986A01 +1,AP732307B04,AP732307B04,NYU_BMS_Melanoma_13059_P2,C12,iTru7_205_02,CCTTGATC,iTru5_18_D,CATCAACC,NYU_BMS_Melanoma_13059,pool1,AP732307B04 +1,EP533426B03,EP533426B03,NYU_BMS_Melanoma_13059_P2,E12,iTru7_205_03,CCATTCAC,iTru5_19_D,GGTCACTA,NYU_BMS_Melanoma_13059,pool2,EP533426B03 +1,EP587476B04,EP587476B04,NYU_BMS_Melanoma_13059_P2,G12,iTru7_205_04,GGACAATC,iTru5_20_D,CGGCATTA,NYU_BMS_Melanoma_13059,pool1,EP587476B04 +1,AP696363B02,AP696363B02,NYU_BMS_Melanoma_13059_P2,I12,iTru7_205_05,AAGGCGTT,iTru5_21_D,ACTCGATC,NYU_BMS_Melanoma_13059,pool2,AP696363B02 +1,EP587477B04,EP587477B04,NYU_BMS_Melanoma_13059_P2,K12,iTru7_205_06,GCCATAAC,iTru5_22_D,ATAGGTCC,NYU_BMS_Melanoma_13059,pool1,EP587477B04 +1,SP683466A02,SP683466A02,NYU_BMS_Melanoma_13059_P2,M12,iTru7_205_07,GAAGTTGG,iTru5_23_D,CAGTCACA,NYU_BMS_Melanoma_13059,pool2,SP683466A02 +1,EP554518B04,EP554518B04,NYU_BMS_Melanoma_13059_P2,O12,iTru7_205_08,AGCCAAGT,iTru5_24_D,TAGTGGTG,NYU_BMS_Melanoma_13059,pool1,EP554518B04 +1,EP533429B04,EP533429B04,NYU_BMS_Melanoma_13059_P2,A14,iTru7_205_09,TGACTGAC,iTru5_13_E,CTCCTGAA,NYU_BMS_Melanoma_13059,pool2,EP533429B04 +1,EP431570B01,EP431570B01,NYU_BMS_Melanoma_13059_P2,C14,iTru7_205_10,CACCTGTT,iTru5_14_E,AATCGCTG,NYU_BMS_Melanoma_13059,pool1,EP431570B01 +1,EP202095B04,EP202095B04,NYU_BMS_Melanoma_13059_P2,E14,iTru7_205_11,ATCCGGTA,iTru5_15_E,TGATAGGC,NYU_BMS_Melanoma_13059,pool2,EP202095B04 +1,EP504030B04,EP504030B04,NYU_BMS_Melanoma_13059_P2,G14,iTru7_205_12,ATCTGTCC,iTru5_16_E,ATGCGTCA,NYU_BMS_Melanoma_13059,pool1,EP504030B04 +1,EP207036B01,EP207036B01,NYU_BMS_Melanoma_13059_P2,I14,iTru7_206_01,CCAAGACT,iTru5_17_E,CAGCATAC,NYU_BMS_Melanoma_13059,pool2,EP207036B01 +1,EP393717B01,EP393717B01,NYU_BMS_Melanoma_13059_P2,K14,iTru7_206_02,ATGGCGAA,iTru5_18_E,AAGTGCAG,NYU_BMS_Melanoma_13059,pool1,EP393717B01 +1,SP491898A02,SP491898A02,NYU_BMS_Melanoma_13059_P2,M14,iTru7_206_03,GGTAGTGT,iTru5_19_E,GTATTCCG,NYU_BMS_Melanoma_13059,pool2,SP491898A02 +1,EP484973B04,EP484973B04,NYU_BMS_Melanoma_13059_P2,O14,iTru7_206_04,TCGCTGTT,iTru5_20_E,GTGATCCA,NYU_BMS_Melanoma_13059,pool1,EP484973B04 +1,EP479794B02,EP479794B02,NYU_BMS_Melanoma_13059_P2,A16,iTru7_206_05,AACGTGGA,iTru5_21_E,TATGGCAC,NYU_BMS_Melanoma_13059,pool2,EP479794B02 +1,EP554515B04,EP554515B04,NYU_BMS_Melanoma_13059_P2,C16,iTru7_206_06,AACGACGT,iTru5_22_E,ACCATAGG,NYU_BMS_Melanoma_13059,pool1,EP554515B04 +1,SP631994A04,SP631994A04,NYU_BMS_Melanoma_13059_P2,E16,iTru7_206_07,AACAGGAC,iTru5_23_E,CTCCAATC,NYU_BMS_Melanoma_13059,pool2,SP631994A04 +1,EP921593A04,EP921593A04,NYU_BMS_Melanoma_13059_P2,G16,iTru7_206_08,AAGCGCAT,iTru5_24_E,AGATACGG,NYU_BMS_Melanoma_13059,pool1,EP921593A04 +1,AP787247B04,AP787247B04,NYU_BMS_Melanoma_13059_P2,I16,iTru7_206_09,CACTGACA,iTru5_13_F,TCGATGAC,NYU_BMS_Melanoma_13059,pool2,AP787247B04 +1,EP090129B04,EP090129B04,NYU_BMS_Melanoma_13059_P2,K16,iTru7_206_10,AGGTCACT,iTru5_14_F,CCAACACT,NYU_BMS_Melanoma_13059,pool1,EP090129B04 +1,EP447975B02,EP447975B02,NYU_BMS_Melanoma_13059_P2,M16,iTru7_206_11,GTCACTGT,iTru5_15_F,CTTCACTG,NYU_BMS_Melanoma_13059,pool2,EP447975B02 +1,EP212214B01,EP212214B01,NYU_BMS_Melanoma_13059_P2,O16,iTru7_206_12,ATGCCAAC,iTru5_16_F,CGATGTTC,NYU_BMS_Melanoma_13059,pool1,EP212214B01 +1,EP410042B01,EP410042B01,NYU_BMS_Melanoma_13059_P2,A18,iTru7_207_01,CACGTTGT,iTru5_17_F,ACCGGTTA,NYU_BMS_Melanoma_13059,pool2,EP410042B01 +1,SP404409A02,SP404409A02,NYU_BMS_Melanoma_13059_P2,C18,iTru7_207_02,TATTCCGG,iTru5_18_F,CTTACAGC,NYU_BMS_Melanoma_13059,pool1,SP404409A02 +1,SP247340A04,SP247340A04,NYU_BMS_Melanoma_13059_P2,E18,iTru7_207_03,TGCTTCCA,iTru5_19_F,TGGCTCTT,NYU_BMS_Melanoma_13059,pool2,SP247340A04 +1,AP029018B01,AP029018B01,NYU_BMS_Melanoma_13059_P2,G18,iTru7_207_04,GTCTAGGT,iTru5_20_F,AAGACCGT,NYU_BMS_Melanoma_13059,pool1,AP029018B01 +1,EP872341A01,EP872341A01,NYU_BMS_Melanoma_13059_P2,I18,iTru7_207_05,GTTCAACC,iTru5_21_F,GGACATCA,NYU_BMS_Melanoma_13059,pool2,EP872341A01 +1,AP062219B03,AP062219B03,NYU_BMS_Melanoma_13059_P2,K18,iTru7_207_06,CGCAATCT,iTru5_22_F,TTGGTGCA,NYU_BMS_Melanoma_13059,pool1,AP062219B03 +1,EP790020A02,EP790020A02,NYU_BMS_Melanoma_13059_P2,M18,iTru7_207_07,TTAAGCGG,iTru5_23_F,AAGCGTTC,NYU_BMS_Melanoma_13059,pool2,EP790020A02 +1,EP808112A04,EP808112A04,NYU_BMS_Melanoma_13059_P2,O18,iTru7_207_08,TGCTTGGT,iTru5_24_F,ACTCTCCA,NYU_BMS_Melanoma_13059,pool1,EP808112A04 +1,SP404403A02,SP404403A02,NYU_BMS_Melanoma_13059_P2,A20,iTru7_207_09,ACACACTC,iTru5_13_G,GAACCTTC,NYU_BMS_Melanoma_13059,pool2,SP404403A02 +1,EP073160B01,EP073160B01,NYU_BMS_Melanoma_13059_P2,C20,iTru7_207_10,CCACTTCT,iTru5_14_G,GGAACATG,NYU_BMS_Melanoma_13059,pool1,EP073160B01 +1,EP012991B03,EP012991B03,NYU_BMS_Melanoma_13059_P2,E20,iTru7_207_11,TTGGTCTC,iTru5_15_G,GCCTATGT,NYU_BMS_Melanoma_13059,pool2,EP012991B03 +1,SP317297A02,SP317297A02,NYU_BMS_Melanoma_13059_P2,G20,iTru7_207_12,CTCATCAG,iTru5_16_G,CCGTAACT,NYU_BMS_Melanoma_13059,pool1,SP317297A02 +1,EP656055A04,EP656055A04,NYU_BMS_Melanoma_13059_P2,I20,iTru7_208_01,ATGACGTC,iTru5_17_G,CGGATCAA,NYU_BMS_Melanoma_13059,pool2,EP656055A04 +1,EP649623A01,EP649623A01,NYU_BMS_Melanoma_13059_P2,K20,iTru7_208_02,AACCTTGG,iTru5_18_G,CCACATTG,NYU_BMS_Melanoma_13059,pool1,EP649623A01 +1,EP790019A01,EP790019A01,NYU_BMS_Melanoma_13059_P2,M20,iTru7_208_03,GTCTTGCA,iTru5_19_G,CTCTATCG,NYU_BMS_Melanoma_13059,pool2,EP790019A01 +1,SP257519A04,SP257519A04,NYU_BMS_Melanoma_13059_P2,O20,iTru7_208_04,CAAGTGCA,iTru5_20_G,TGTGTCAG,NYU_BMS_Melanoma_13059,pool1,SP257519A04 +1,EP808104A01,EP808104A01,NYU_BMS_Melanoma_13059_P2,A22,iTru7_208_05,TCCGAGTT,iTru5_21_G,CGCAACTA,NYU_BMS_Melanoma_13059,pool2,EP808104A01 +1,EP808106A01,EP808106A01,NYU_BMS_Melanoma_13059_P2,C22,iTru7_208_06,ACCTAAGG,iTru5_22_G,GATCAGAC,NYU_BMS_Melanoma_13059,pool1,EP808106A01 +1,SP231629A02,SP231629A02,NYU_BMS_Melanoma_13059_P2,E22,iTru7_208_07,TTGGACGT,iTru5_23_G,ATTCCGCT,NYU_BMS_Melanoma_13059,pool2,SP231629A02 +1,EP675044A01,EP675044A01,NYU_BMS_Melanoma_13059_P2,G22,iTru7_208_08,GATAGCGA,iTru5_24_G,ATCCTTCC,NYU_BMS_Melanoma_13059,pool1,EP675044A01 +1,EP657260A01,EP657260A01,NYU_BMS_Melanoma_13059_P2,I22,iTru7_208_09,TTGGTGAG,iTru5_13_H,GCTTCACA,NYU_BMS_Melanoma_13059,pool2,EP657260A01 +1,EP808110A04,EP808110A04,NYU_BMS_Melanoma_13059_P2,K22,iTru7_208_10,AACTGGTG,iTru5_14_H,CTTCGGTT,NYU_BMS_Melanoma_13059,pool1,EP808110A04 +1,AP032413B04,AP032413B04,NYU_BMS_Melanoma_13059_P2,M22,iTru7_208_11,TAGCCGAA,iTru5_15_H,CATGGATC,NYU_BMS_Melanoma_13059,pool2,AP032413B04 +1,EP843906A04,EP843906A04,NYU_BMS_Melanoma_13059_P2,O22,iTru7_208_12,TGCGAACT,iTru5_16_H,GTCAACAG,NYU_BMS_Melanoma_13059,pool1,EP843906A04 +1,AP173305B04,AP173305B04,NYU_BMS_Melanoma_13059_P2,A24,iTru7_209_01,GACTTAGG,iTru5_17_H,AATTCCGG,NYU_BMS_Melanoma_13059,pool2,AP173305B04 +1,SP231628A02,SP231628A02,NYU_BMS_Melanoma_13059_P2,C24,iTru7_209_02,ACACCAGT,iTru5_18_H,GGCGAATA,NYU_BMS_Melanoma_13059,pool1,SP231628A02 +1,AP173301B04,AP173301B04,NYU_BMS_Melanoma_13059_P2,E24,iTru7_209_03,CCTGATTG,iTru5_19_H,AGGAGGTT,NYU_BMS_Melanoma_13059,pool2,AP173301B04 +1,SP404405A02,SP404405A02,NYU_BMS_Melanoma_13059_P2,G24,iTru7_209_04,TTGTGTGC,iTru5_20_H,ACTCTGAG,NYU_BMS_Melanoma_13059,pool1,SP404405A02 +1,EP649653A04,EP649653A04,NYU_BMS_Melanoma_13059_P2,I24,iTru7_209_05,TACCACAG,iTru5_21_H,GCCTTCTT,NYU_BMS_Melanoma_13059,pool2,EP649653A04 +1,EP718687A04,EP718687A04,NYU_BMS_Melanoma_13059_P2,K24,iTru7_209_06,ATTCGAGG,iTru5_22_H,TGGACCAT,NYU_BMS_Melanoma_13059,pool1,EP718687A04 +1,AP905750A02,AP905750A02,NYU_BMS_Melanoma_13059_P2,M24,iTru7_209_07,GCACGTAA,iTru5_23_H,GCATAGTC,NYU_BMS_Melanoma_13059,pool2,AP905750A02 +1,EP738468A01,EP738468A01,NYU_BMS_Melanoma_13059_P2,O24,iTru7_209_08,GTGTGACA,iTru5_24_H,TACACACG,NYU_BMS_Melanoma_13059,pool1,EP738468A01 +1,C6,C6,NYU_BMS_Melanoma_13059_P3,B1,iTru7_209_09,CTGGTTCT,iTru5_101_A,AACAACCG,NYU_BMS_Melanoma_13059,pool2,C6 +1,EP890157A02,EP890157A02,NYU_BMS_Melanoma_13059_P3,D1,iTru7_209_10,ACTGTGTC,iTru5_102_A,AAGCCTGA,NYU_BMS_Melanoma_13059,pool1,EP890157A02 +1,SP353893A02,SP353893A02,NYU_BMS_Melanoma_13059_P3,F1,iTru7_209_11,CCATACGT,iTru5_103_A,AAGGACCA,NYU_BMS_Melanoma_13059,pool2,SP353893A02 +1,EP944059A02,EP944059A02,NYU_BMS_Melanoma_13059_P3,H1,iTru7_209_12,GGTACTAC,iTru5_104_A,ACAACGTG,NYU_BMS_Melanoma_13059,pool1,EP944059A02 +1,EP970005A01,EP970005A01,NYU_BMS_Melanoma_13059_P3,J1,iTru7_210_01,CAGTCCAA,iTru5_105_A,ACGAACGA,NYU_BMS_Melanoma_13059,pool2,EP970005A01 +1,EP927461A04,EP927461A04,NYU_BMS_Melanoma_13059_P3,L1,iTru7_210_02,TCGTAGTC,iTru5_106_A,ACGTCCAA,NYU_BMS_Melanoma_13059,pool1,EP927461A04 +1,EP808111A03,EP808111A03,NYU_BMS_Melanoma_13059_P3,N1,iTru7_210_03,TCGAGTGA,iTru5_107_A,ACTGGTGT,NYU_BMS_Melanoma_13059,pool2,EP808111A03 +1,EP927459A04,EP927459A04,NYU_BMS_Melanoma_13059_P3,P1,iTru7_210_04,TGTAGCCA,iTru5_108_A,AGATCGTC,NYU_BMS_Melanoma_13059,pool1,EP927459A04 +1,SP317293A02,SP317293A02,NYU_BMS_Melanoma_13059_P3,B3,iTru7_210_05,TGCAGGTA,iTru5_109_A,AGCGAGAT,NYU_BMS_Melanoma_13059,pool2,SP317293A02 +1,SP235186A04,SP235186A04,NYU_BMS_Melanoma_13059_P3,D3,iTru7_210_06,CTAGGTGA,iTru5_110_A,AGGATAGC,NYU_BMS_Melanoma_13059,pool1,SP235186A04 +1,SP399724A04,SP399724A04,NYU_BMS_Melanoma_13059_P3,F3,iTru7_210_07,CTCCATGT,iTru5_111_A,AGGTGTTG,NYU_BMS_Melanoma_13059,pool2,SP399724A04 +1,EP738469A01,EP738469A01,NYU_BMS_Melanoma_13059_P3,H3,iTru7_210_08,CTTACAGC,iTru5_112_A,AGTCTTGG,NYU_BMS_Melanoma_13059,pool1,EP738469A01 +1,SP284095A03,SP284095A03,NYU_BMS_Melanoma_13059_P3,J3,iTru7_210_09,CGTATTCG,iTru5_101_B,GGTTGGTA,NYU_BMS_Melanoma_13059,pool2,SP284095A03 +1,C5,C5,NYU_BMS_Melanoma_13059_P3,L3,iTru7_210_10,ATTCTGGC,iTru5_102_B,GGAGGAAT,NYU_BMS_Melanoma_13059,pool1,C5 +1,EP337325B04,EP337325B04,NYU_BMS_Melanoma_13059_P3,N3,iTru7_210_11,TACCAGGA,iTru5_103_B,GTAAGGTG,NYU_BMS_Melanoma_13059,pool2,EP337325B04 +1,EP759450A04,EP759450A04,NYU_BMS_Melanoma_13059_P3,P3,iTru7_210_12,TACATCGG,iTru5_104_B,GGTGTACA,NYU_BMS_Melanoma_13059,pool1,EP759450A04 +1,BLANK3_3A,BLANK3.3A,NYU_BMS_Melanoma_13059_P3,B5,iTru7_301_01,GTGGTGTT,iTru5_105_B,GGATGTAG,NYU_BMS_Melanoma_13059,pool2,BLANK3.3A +1,BLANK3_3B,BLANK3.3B,NYU_BMS_Melanoma_13059_P3,D5,iTru7_301_02,CGCATGAT,iTru5_106_B,GTCCTGTT,NYU_BMS_Melanoma_13059,pool1,BLANK3.3B +1,BLANK3_3C,BLANK3.3C,NYU_BMS_Melanoma_13059_P3,F5,iTru7_301_03,AGTCGACA,iTru5_107_B,GTACCACA,NYU_BMS_Melanoma_13059,pool2,BLANK3.3C +1,BLANK3_3D,BLANK3.3D,NYU_BMS_Melanoma_13059_P3,H5,iTru7_301_04,GTGAGCTT,iTru5_108_B,GATCTCAG,NYU_BMS_Melanoma_13059,pool1,BLANK3.3D +1,BLANK3_3E,BLANK3.3E,NYU_BMS_Melanoma_13059_P3,J5,iTru7_301_05,GACATTCC,iTru5_109_B,GAGCTCTA,NYU_BMS_Melanoma_13059,pool2,BLANK3.3E +1,BLANK3_3F,BLANK3.3F,NYU_BMS_Melanoma_13059_P3,L5,iTru7_301_06,AGTTCGTC,iTru5_110_B,TACTAGCG,NYU_BMS_Melanoma_13059,pool1,BLANK3.3F +1,BLANK3_3G,BLANK3.3G,NYU_BMS_Melanoma_13059_P3,N5,iTru7_301_07,TAATGCCG,iTru5_111_B,GCACACAA,NYU_BMS_Melanoma_13059,pool2,BLANK3.3G +1,BLANK3_3H,BLANK3.3H,NYU_BMS_Melanoma_13059_P3,P5,iTru7_301_08,CGACCATT,iTru5_112_B,GAATCACC,NYU_BMS_Melanoma_13059,pool1,BLANK3.3H +1,AP006367B02,AP006367B02,NYU_BMS_Melanoma_13059_P3,B7,iTru7_301_09,CTGAAGCT,iTru5_101_C,AACAGCGA,NYU_BMS_Melanoma_13059,pool2,AP006367B02 +1,EP929277A02,EP929277A02,NYU_BMS_Melanoma_13059_P3,D7,iTru7_301_10,TTGAGGCA,iTru5_102_C,AAGCGACT,NYU_BMS_Melanoma_13059,pool1,EP929277A02 +1,AP324642B04,AP324642B04,NYU_BMS_Melanoma_13059_P3,F7,iTru7_301_11,GATCGAGT,iTru5_103_C,AAGGCGTA,NYU_BMS_Melanoma_13059,pool2,AP324642B04 +1,EP786631A04,EP786631A04,NYU_BMS_Melanoma_13059_P3,H7,iTru7_301_12,ATACTCCG,iTru5_104_C,ACACCGAT,NYU_BMS_Melanoma_13059,pool1,EP786631A04 +1,EP657385A04,EP657385A04,NYU_BMS_Melanoma_13059_P3,J7,iTru7_302_01,AAGTCCGT,iTru5_105_C,ACGAATCC,NYU_BMS_Melanoma_13059,pool2,EP657385A04 +1,SP235189A01,SP235189A01,NYU_BMS_Melanoma_13059_P3,L7,iTru7_302_02,TAGCGTCT,iTru5_106_C,ACTACGGT,NYU_BMS_Melanoma_13059,pool1,SP235189A01 +1,EP448041B04,EP448041B04,NYU_BMS_Melanoma_13059_P3,N7,iTru7_302_03,TGACGCAT,iTru5_107_C,AGAAGCCT,NYU_BMS_Melanoma_13059,pool2,EP448041B04 +1,SP231631A02,SP231631A02,NYU_BMS_Melanoma_13059_P3,P7,iTru7_302_04,AGCGTGTT,iTru5_108_C,AGATTGCG,NYU_BMS_Melanoma_13059,pool1,SP231631A02 +1,SP280481A02,SP280481A02,NYU_BMS_Melanoma_13059_P3,B9,iTru7_302_05,TGCACCAA,iTru5_109_C,AGCGTGTA,NYU_BMS_Melanoma_13059,pool2,SP280481A02 +1,AP032412B04,AP032412B04,NYU_BMS_Melanoma_13059_P3,D9,iTru7_302_06,ATCACACG,iTru5_110_C,AGGCTGAA,NYU_BMS_Melanoma_13059,pool1,AP032412B04 +1,EP649737A03,EP649737A03,NYU_BMS_Melanoma_13059_P3,F9,iTru7_302_07,ATGCCTGT,iTru5_111_C,AGGTTCCT,NYU_BMS_Melanoma_13059,pool2,EP649737A03 +1,AP967057A04,AP967057A04,NYU_BMS_Melanoma_13059_P3,H9,iTru7_302_08,ACCTGACT,iTru5_112_C,AGTGACCT,NYU_BMS_Melanoma_13059,pool1,AP967057A04 +1,EP876243A04,EP876243A04,NYU_BMS_Melanoma_13059_P3,J9,iTru7_302_09,GCTTCGAA,iTru5_101_D,GGTTAGCT,NYU_BMS_Melanoma_13059,pool2,EP876243A04 +1,SP229387A04,SP229387A04,NYU_BMS_Melanoma_13059_P3,L9,iTru7_302_10,CGGTCATA,iTru5_102_D,GTAGCGTA,NYU_BMS_Melanoma_13059,pool1,SP229387A04 +1,EP667743A04,EP667743A04,NYU_BMS_Melanoma_13059_P3,N9,iTru7_302_11,GTTAGACG,iTru5_103_D,GGACTACT,NYU_BMS_Melanoma_13059,pool2,EP667743A04 +1,SP246941A01,SP246941A01,NYU_BMS_Melanoma_13059_P3,P9,iTru7_302_12,TCTAACGC,iTru5_104_D,TGGTTCGA,NYU_BMS_Melanoma_13059,pool1,SP246941A01 +1,AP745799A04,AP745799A04,NYU_BMS_Melanoma_13059_P3,B11,iTru7_303_01,ATAGCGGT,iTru5_105_D,GGAGTCTT,NYU_BMS_Melanoma_13059,pool2,AP745799A04 +1,SP205732A02,SP205732A02,NYU_BMS_Melanoma_13059_P3,D11,iTru7_303_02,GGACCTAT,iTru5_106_D,GGATTCAC,NYU_BMS_Melanoma_13059,pool1,SP205732A02 +1,SP230382A04,SP230382A04,NYU_BMS_Melanoma_13059_P3,F11,iTru7_303_03,CGATGCTT,iTru5_107_D,TCGGATTC,NYU_BMS_Melanoma_13059,pool2,SP230382A04 +1,SP230380A02,SP230380A02,NYU_BMS_Melanoma_13059_P3,H11,iTru7_303_04,GAGCTTGT,iTru5_108_D,GAGCAATC,NYU_BMS_Melanoma_13059,pool1,SP230380A02 +1,SP230381A01,SP230381A01,NYU_BMS_Melanoma_13059_P3,J11,iTru7_303_05,GTGAAGTG,iTru5_109_D,GATCCACT,NYU_BMS_Melanoma_13059,pool2,SP230381A01 +1,SP205754A01,SP205754A01,NYU_BMS_Melanoma_13059_P3,L11,iTru7_303_06,GAGTGGTT,iTru5_110_D,GAAGACTG,NYU_BMS_Melanoma_13059,pool1,SP205754A01 +1,EP606662B04,EP606662B04,NYU_BMS_Melanoma_13059_P3,N11,iTru7_303_07,TGATACGC,iTru5_111_D,GCCACTTA,NYU_BMS_Melanoma_13059,pool2,EP606662B04 +1,AP780167B02,AP780167B02,NYU_BMS_Melanoma_13059_P3,P11,iTru7_303_08,AGCAGATG,iTru5_112_D,TCCATTGC,NYU_BMS_Melanoma_13059,pool1,AP780167B02 +1,EP447927B04,EP447927B04,NYU_BMS_Melanoma_13059_P3,B13,iTru7_303_09,CCAGTGTT,iTru5_101_E,AACAGTCC,NYU_BMS_Melanoma_13059,pool2,EP447927B04 +1,C18,C18,NYU_BMS_Melanoma_13059_P3,D13,iTru7_303_10,ATTCCTCC,iTru5_102_E,AAGCTCAC,NYU_BMS_Melanoma_13059,pool1,C18 +1,LP191039A01,LP191039A01,NYU_BMS_Melanoma_13059_P3,F13,iTru7_303_11,CTAACTCG,iTru5_103_E,AAGTCCTC,NYU_BMS_Melanoma_13059,pool2,LP191039A01 +1,EP606663B04,EP606663B04,NYU_BMS_Melanoma_13059_P3,H13,iTru7_303_12,GATGAGAC,iTru5_104_E,ACACTCTG,NYU_BMS_Melanoma_13059,pool1,EP606663B04 +1,EP573296B01,EP573296B01,NYU_BMS_Melanoma_13059_P3,J13,iTru7_304_01,TCAGGCTT,iTru5_105_E,ACGGTACA,NYU_BMS_Melanoma_13059,pool2,EP573296B01 +1,EP447926B04,EP447926B04,NYU_BMS_Melanoma_13059_P3,L13,iTru7_304_02,GTTCTCGT,iTru5_106_E,ACTCCTAC,NYU_BMS_Melanoma_13059,pool1,EP447926B04 +1,LP127767A01,LP127767A01,NYU_BMS_Melanoma_13059_P3,N13,iTru7_304_03,ATCGATCG,iTru5_107_E,AGAGGATG,NYU_BMS_Melanoma_13059,pool2,LP127767A01 +1,EP479266B04,EP479266B04,NYU_BMS_Melanoma_13059_P3,P13,iTru7_304_04,CCTCAGTT,iTru5_108_E,AGCCGTAA,NYU_BMS_Melanoma_13059,pool1,EP479266B04 +1,LP128543A01,LP128543A01,NYU_BMS_Melanoma_13059_P3,B15,iTru7_304_05,ACTGCTAG,iTru5_109_E,AGCTTCAG,NYU_BMS_Melanoma_13059,pool2,LP128543A01 +1,EP479270B03,EP479270B03,NYU_BMS_Melanoma_13059_P3,D15,iTru7_304_06,TCCGTGAA,iTru5_110_E,AGGTAGGA,NYU_BMS_Melanoma_13059,pool1,EP479270B03 +1,EP921594A04,EP921594A04,NYU_BMS_Melanoma_13059_P3,F15,iTru7_304_07,GGATTCGT,iTru5_111_E,AGTACACG,NYU_BMS_Melanoma_13059,pool2,EP921594A04 +1,EP554501B04,EP554501B04,NYU_BMS_Melanoma_13059_P3,H15,iTru7_304_08,GGTCAGAT,iTru5_112_E,AGTGCATC,NYU_BMS_Melanoma_13059,pool1,EP554501B04 +1,EP542577B04,EP542577B04,NYU_BMS_Melanoma_13059_P3,J15,iTru7_304_09,TCGTGGAT,iTru5_101_F,TTGGACTG,NYU_BMS_Melanoma_13059,pool2,EP542577B04 +1,EP487995B04,EP487995B04,NYU_BMS_Melanoma_13059_P3,L15,iTru7_304_10,CGTGTGTA,iTru5_102_F,GTCGATTG,NYU_BMS_Melanoma_13059,pool1,EP487995B04 +1,EP542578B04,EP542578B04,NYU_BMS_Melanoma_13059_P3,N15,iTru7_304_11,GTGTCTGA,iTru5_103_F,GGCATTCT,NYU_BMS_Melanoma_13059,pool2,EP542578B04 +1,EP573310B01,EP573310B01,NYU_BMS_Melanoma_13059_P3,P15,iTru7_304_12,GAATCGTG,iTru5_104_F,TGGTATCC,NYU_BMS_Melanoma_13059,pool1,EP573310B01 +1,EP244366B01,EP244366B01,NYU_BMS_Melanoma_13059_P3,B17,iTru7_305_01,GCGATAGT,iTru5_105_F,GGCAAGTT,NYU_BMS_Melanoma_13059,pool2,EP244366B01 +1,EP533389B03,EP533389B03,NYU_BMS_Melanoma_13059_P3,D17,iTru7_305_02,GGCTATTG,iTru5_106_F,GTCTGAGT,NYU_BMS_Melanoma_13059,pool1,EP533389B03 +1,EP244360B01,EP244360B01,NYU_BMS_Melanoma_13059_P3,F17,iTru7_305_03,AGTTACGG,iTru5_107_F,TCTACGCA,NYU_BMS_Melanoma_13059,pool2,EP244360B01 +1,AP911328B01,AP911328B01,NYU_BMS_Melanoma_13059_P3,H17,iTru7_305_04,CGTACGAA,iTru5_108_F,GAGGCATT,NYU_BMS_Melanoma_13059,pool1,AP911328B01 +1,AP481403B02,AP481403B02,NYU_BMS_Melanoma_13059_P3,J17,iTru7_305_05,ACCACGAT,iTru5_109_F,GCTAAGGA,NYU_BMS_Melanoma_13059,pool2,AP481403B02 +1,22_001_801_552_503_00,22.001.801.552.503.00,NYU_BMS_Melanoma_13059_P3,L17,iTru7_305_06,GATTACCG,iTru5_110_F,GCCAGAAT,NYU_BMS_Melanoma_13059,pool1,22_001_801_552_503_00 +1,EP372981B04,EP372981B04,NYU_BMS_Melanoma_13059_P3,N17,iTru7_305_07,GAGATACG,iTru5_111_F,TAAGTGGC,NYU_BMS_Melanoma_13059,pool2,EP372981B04 +1,EP447929B04,EP447929B04,NYU_BMS_Melanoma_13059_P3,P17,iTru7_305_08,CGACGTTA,iTru5_112_F,GCAATGAG,NYU_BMS_Melanoma_13059,pool1,EP447929B04 +1,SP573849A04,SP573849A04,NYU_BMS_Melanoma_13059_P3,B19,iTru7_305_09,GAGATGTC,iTru5_101_G,AACTGAGG,NYU_BMS_Melanoma_13059,pool2,SP573849A04 +1,SP577399A02,SP577399A02,NYU_BMS_Melanoma_13059_P3,D19,iTru7_305_10,GATTGGAG,iTru5_102_G,AAGGAAGG,NYU_BMS_Melanoma_13059,pool1,SP577399A02 +1,EP606656B03,EP606656B03,NYU_BMS_Melanoma_13059_P3,F19,iTru7_305_11,GCAATTCG,iTru5_103_G,AATGGTCG,NYU_BMS_Melanoma_13059,pool2,EP606656B03 +1,LP166715A01,LP166715A01,NYU_BMS_Melanoma_13059_P3,H19,iTru7_305_12,CGTCAATG,iTru5_104_G,ACAGCAAG,NYU_BMS_Melanoma_13059,pool1,LP166715A01 +1,AP668628B04,AP668628B04,NYU_BMS_Melanoma_13059_P3,J19,iTru7_401_01,ATGCACGA,iTru5_105_G,ACGTATGG,NYU_BMS_Melanoma_13059,pool2,AP668628B04 +1,C14,C14,NYU_BMS_Melanoma_13059_P3,L19,iTru7_401_02,ATCGCCAT,iTru5_106_G,ACTGCACT,NYU_BMS_Melanoma_13059,pool1,C14 +1,EP446610B02,EP446610B02,NYU_BMS_Melanoma_13059_P3,N19,iTru7_401_03,TCTCGCAA,iTru5_107_G,AGAGTCCA,NYU_BMS_Melanoma_13059,pool2,EP446610B02 +1,EP339061B02,EP339061B02,NYU_BMS_Melanoma_13059_P3,P19,iTru7_401_04,ACGACAGA,iTru5_108_G,AGCCTATC,NYU_BMS_Melanoma_13059,pool1,EP339061B02 +1,SP681591A04,SP681591A04,NYU_BMS_Melanoma_13059_P3,B21,iTru7_401_05,TTACGGCT,iTru5_109_G,AGGAACAC,NYU_BMS_Melanoma_13059,pool2,SP681591A04 +1,EP393712B02,EP393712B02,NYU_BMS_Melanoma_13059_P3,D21,iTru7_401_06,GAGGACTT,iTru5_110_G,AGGTCTGT,NYU_BMS_Melanoma_13059,pool1,EP393712B02 +1,EP410041B01,EP410041B01,NYU_BMS_Melanoma_13059_P3,F21,iTru7_401_07,GGCATACT,iTru5_111_G,AGTATGCC,NYU_BMS_Melanoma_13059,pool2,EP410041B01 +1,SP453872A01,SP453872A01,NYU_BMS_Melanoma_13059_P3,H21,iTru7_401_08,CGTAGGTT,iTru5_112_G,AGTTCGCA,NYU_BMS_Melanoma_13059,pool1,SP453872A01 +1,22_001_710_503_791_00,22.001.710.503.791.00,NYU_BMS_Melanoma_13059_P3,J21,iTru7_401_09,ATATGCGC,iTru5_101_H,TGGAAGCA,NYU_BMS_Melanoma_13059,pool2,22_001_710_503_791_00 +1,LP128540A01,LP128540A01,NYU_BMS_Melanoma_13059_P3,L21,iTru7_401_10,GGATGTAG,iTru5_102_H,GTCAGTCA,NYU_BMS_Melanoma_13059,pool1,LP128540A01 +1,EP339053B02,EP339053B02,NYU_BMS_Melanoma_13059_P3,N21,iTru7_401_11,CCTGTCAT,iTru5_103_H,GTAACCGA,NYU_BMS_Melanoma_13059,pool2,EP339053B02 +1,EP617443B01,EP617443B01,NYU_BMS_Melanoma_13059_P3,P21,iTru7_401_12,TGCTCATG,iTru5_104_H,GTTATGGC,NYU_BMS_Melanoma_13059,pool1,EP617443B01 +1,EP190307B01,EP190307B01,NYU_BMS_Melanoma_13059_P3,B23,iTru7_402_01,TGAAGACG,iTru5_105_H,GTAAGCAC,NYU_BMS_Melanoma_13059,pool2,EP190307B01 +1,AP795068B04,AP795068B04,NYU_BMS_Melanoma_13059_P3,D23,iTru7_402_02,GTTACGCA,iTru5_106_H,GGAATGTC,NYU_BMS_Melanoma_13059,pool1,AP795068B04 +1,LP128541A01,LP128541A01,NYU_BMS_Melanoma_13059_P3,F23,iTru7_402_03,ACTCAGAC,iTru5_107_H,GAGAAGGT,NYU_BMS_Melanoma_13059,pool2,LP128541A01 +1,EP584756B04,EP584756B04,NYU_BMS_Melanoma_13059_P3,H23,iTru7_402_04,GTCCACAT,iTru5_108_H,GAGTAGAG,NYU_BMS_Melanoma_13059,pool1,EP584756B04 +1,SP284096A02,SP284096A02,NYU_BMS_Melanoma_13059_P3,J23,iTru7_402_05,CGCTAGTA,iTru5_109_H,GCATTGGT,NYU_BMS_Melanoma_13059,pool2,SP284096A02 +1,EP431562B04,EP431562B04,NYU_BMS_Melanoma_13059_P3,L23,iTru7_402_06,GAATCCGA,iTru5_110_H,TCCAGCAA,NYU_BMS_Melanoma_13059,pool1,EP431562B04 +1,EP685640B01,EP685640B01,NYU_BMS_Melanoma_13059_P3,N23,iTru7_402_07,GAGACGAT,iTru5_111_H,GAATCCGT,NYU_BMS_Melanoma_13059,pool2,EP685640B01 +1,EP339059B02,EP339059B02,NYU_BMS_Melanoma_13059_P3,P23,iTru7_402_08,TAAGTGGC,iTru5_112_H,TACATCGG,NYU_BMS_Melanoma_13059,pool1,EP339059B02 +1,EP431575B01,EP431575B01,NYU_BMS_Melanoma_13059_P4,B2,iTru7_402_09,ACTGAGGT,iTru5_113_A,ATAACGCC,NYU_BMS_Melanoma_13059,pool2,EP431575B01 +1,EP379938B01,EP379938B01,NYU_BMS_Melanoma_13059_P4,D2,iTru7_402_10,TGTACCGT,iTru5_114_A,ATGACAGG,NYU_BMS_Melanoma_13059,pool1,EP379938B01 +1,EP529635B02,EP529635B02,NYU_BMS_Melanoma_13059_P4,F2,iTru7_402_11,AGCAAGCA,iTru5_115_A,CAACACAG,NYU_BMS_Melanoma_13059,pool2,EP529635B02 +1,EP554506B04,EP554506B04,NYU_BMS_Melanoma_13059_P4,H2,iTru7_402_12,TCTCGTGT,iTru5_116_A,CACCAGTT,NYU_BMS_Melanoma_13059,pool1,EP554506B04 +1,EP455757B04,EP455757B04,NYU_BMS_Melanoma_13059_P4,J2,iTru7_115_01,CAAGGTCT,iTru5_117_A,CAGAGTGA,NYU_BMS_Melanoma_13059,pool2,EP455757B04 +1,SP491900A02,SP491900A02,NYU_BMS_Melanoma_13059_P4,L2,iTru7_115_02,TAGACGTG,iTru5_118_A,CCGATGTA,NYU_BMS_Melanoma_13059,pool1,SP491900A02 +1,LP196272A01,LP196272A01,NYU_BMS_Melanoma_13059_P4,N2,iTru7_115_03,TGAGCTAG,iTru5_119_A,CCTTCCAT,NYU_BMS_Melanoma_13059,pool2,LP196272A01 +1,SP704319A04,SP704319A04,NYU_BMS_Melanoma_13059_P4,P2,iTru7_115_04,CTGACACA,iTru5_120_A,CGGTAATC,NYU_BMS_Melanoma_13059,pool1,SP704319A04 +1,EP617441B01,EP617441B01,NYU_BMS_Melanoma_13059_P4,B4,iTru7_115_05,ACGGTCTT,iTru5_121_A,CTAGGTTG,NYU_BMS_Melanoma_13059,pool2,EP617441B01 +1,AP687591B04,AP687591B04,NYU_BMS_Melanoma_13059_P4,D4,iTru7_115_06,GCTGTTGT,iTru5_122_A,CTCGGTAA,NYU_BMS_Melanoma_13059,pool1,AP687591B04 +1,SP640978A02,SP640978A02,NYU_BMS_Melanoma_13059_P4,F4,iTru7_115_07,CACTAGCT,iTru5_123_A,CTGTGGTA,NYU_BMS_Melanoma_13059,pool2,SP640978A02 +1,EP981129A02,EP981129A02,NYU_BMS_Melanoma_13059_P4,H4,iTru7_115_08,TGGTACAG,iTru5_124_A,GTACGATC,NYU_BMS_Melanoma_13059,pool1,EP981129A02 +1,EP455763B04,EP455763B04,NYU_BMS_Melanoma_13059_P4,J4,iTru7_115_09,AGCACTTC,iTru5_113_B,TCTGTCGT,NYU_BMS_Melanoma_13059,pool2,EP455763B04 +1,EP339057B02,EP339057B02,NYU_BMS_Melanoma_13059_P4,L4,iTru7_115_10,GCATACAG,iTru5_114_B,GAATGGCA,NYU_BMS_Melanoma_13059,pool1,EP339057B02 +1,SP491897A02,SP491897A02,NYU_BMS_Melanoma_13059_P4,N4,iTru7_115_11,CTTAGGAC,iTru5_115_B,GTGTGTTC,NYU_BMS_Melanoma_13059,pool2,SP491897A02 +1,EP980752B04,EP980752B04,NYU_BMS_Melanoma_13059_P4,P4,iTru7_211_01,GCTTCTTG,iTru5_116_B,GGTTGAAC,NYU_BMS_Melanoma_13059,pool1,EP980752B04 +1,LP128539A01,LP128539A01,NYU_BMS_Melanoma_13059_P4,B6,iTru7_101_01,ACGTTACC,iTru5_117_B,GGCTCAAT,NYU_BMS_Melanoma_13059,pool2,LP128539A01 +1,EP996831B04,EP996831B04,NYU_BMS_Melanoma_13059_P4,D6,iTru7_101_02,CTGTGTTG,iTru5_118_B,TTCGCCAT,NYU_BMS_Melanoma_13059,pool1,EP996831B04 +1,EP273332B04,EP273332B04,NYU_BMS_Melanoma_13059_P4,F6,iTru7_101_03,TGAGGTGT,iTru5_119_B,GTCCTTGA,NYU_BMS_Melanoma_13059,pool2,EP273332B04 +1,EP483291B04,EP483291B04,NYU_BMS_Melanoma_13059_P4,H6,iTru7_101_04,GATCCATG,iTru5_120_B,TAACGTCG,NYU_BMS_Melanoma_13059,pool1,EP483291B04 +1,EP393715B01,EP393715B01,NYU_BMS_Melanoma_13059_P4,J6,iTru7_101_05,GCCTATCA,iTru5_121_B,GAGACCAA,NYU_BMS_Melanoma_13059,pool2,EP393715B01 +1,EP617440B01,EP617440B01,NYU_BMS_Melanoma_13059_P4,L6,iTru7_101_06,AACAACCG,iTru5_122_B,GATCAAGG,NYU_BMS_Melanoma_13059,pool1,EP617440B01 +1,EP729434A01,EP729434A01,NYU_BMS_Melanoma_13059_P4,N6,iTru7_101_07,ACTCGTTG,iTru5_123_B,GCAACCAT,NYU_BMS_Melanoma_13059,pool2,EP729434A01 +1,SP645141A03,SP645141A03,NYU_BMS_Melanoma_13059_P4,P6,iTru7_101_08,CCTATGGT,iTru5_124_B,AAGGAGAC,NYU_BMS_Melanoma_13059,pool1,SP645141A03 +1,BLANK4_4A,BLANK4.4A,NYU_BMS_Melanoma_13059_P4,B8,iTru7_101_09,TGTACACC,iTru5_113_C,ATCGGAGA,NYU_BMS_Melanoma_13059,pool2,BLANK4.4A +1,BLANK4_4B,BLANK4.4B,NYU_BMS_Melanoma_13059_P4,D8,iTru7_101_10,GTATGCTG,iTru5_114_C,ATGCGCTT,NYU_BMS_Melanoma_13059,pool1,BLANK4.4B +1,BLANK4_4C,BLANK4.4C,NYU_BMS_Melanoma_13059_P4,F8,iTru7_101_11,TGATGTCC,iTru5_115_C,CAACCGTA,NYU_BMS_Melanoma_13059,pool2,BLANK4.4C +1,BLANK4_4D,BLANK4.4D,NYU_BMS_Melanoma_13059_P4,H8,iTru7_101_12,GTCCTTCT,iTru5_116_C,CACTTCAC,NYU_BMS_Melanoma_13059,pool1,BLANK4.4D +1,BLANK4_4E,BLANK4.4E,NYU_BMS_Melanoma_13059_P4,J8,iTru7_102_01,ATAAGGCG,iTru5_117_C,CAGCTAGA,NYU_BMS_Melanoma_13059,pool2,BLANK4.4E +1,BLANK4_4F,BLANK4.4F,NYU_BMS_Melanoma_13059_P4,L8,iTru7_102_02,CTTACCTG,iTru5_118_C,CCGTTATG,NYU_BMS_Melanoma_13059,pool1,BLANK4.4F +1,BLANK4_4G,BLANK4.4G,NYU_BMS_Melanoma_13059_P4,N8,iTru7_102_03,CGTTGCAA,iTru5_119_C,CGAACAAC,NYU_BMS_Melanoma_13059,pool2,BLANK4.4G +1,BLANK4_4H,BLANK4.4H,NYU_BMS_Melanoma_13059_P4,P8,iTru7_102_04,GATTCAGC,iTru5_120_C,CGTAGATG,NYU_BMS_Melanoma_13059,pool1,BLANK4.4H +1,SP232114A04,SP232114A04,NYU_BMS_Melanoma_13059_P4,B10,iTru7_102_05,TCACGTTC,iTru5_121_C,CTATGCCT,NYU_BMS_Melanoma_13059,pool2,SP232114A04 +1,EP393714B01,EP393714B01,NYU_BMS_Melanoma_13059_P4,D10,iTru7_102_06,TGTGCGTT,iTru5_122_C,CTGATGAG,NYU_BMS_Melanoma_13059,pool1,EP393714B01 +1,EP533388B01,EP533388B01,NYU_BMS_Melanoma_13059_P4,F10,iTru7_102_07,TAGTTGCG,iTru5_123_C,CTTCCTTC,NYU_BMS_Melanoma_13059,pool2,EP533388B01 +1,EP724905B01,EP724905B01,NYU_BMS_Melanoma_13059_P4,H10,iTru7_102_08,AAGAGCCA,iTru5_124_C,GTCTCATC,NYU_BMS_Melanoma_13059,pool1,EP724905B01 +1,EP282108B01,EP282108B01,NYU_BMS_Melanoma_13059_P4,J10,iTru7_102_09,ACAGCTCA,iTru5_113_D,GCGCATAT,NYU_BMS_Melanoma_13059,pool2,EP282108B01 +1,EP282107B01,EP282107B01,NYU_BMS_Melanoma_13059_P4,L10,iTru7_102_10,GTTAAGGC,iTru5_114_D,GAAGATCC,NYU_BMS_Melanoma_13059,pool1,EP282107B01 +1,EP001625B01,EP001625B01,NYU_BMS_Melanoma_13059_P4,N10,iTru7_102_11,AAGCCACA,iTru5_115_D,GTTGGCAT,NYU_BMS_Melanoma_13059,pool2,EP001625B01 +1,EP073209B02,EP073209B02,NYU_BMS_Melanoma_13059_P4,P10,iTru7_102_12,ACACGGTT,iTru5_116_D,GTGAATGG,NYU_BMS_Melanoma_13059,pool1,EP073209B02 +1,SP232079A01,SP232079A01,NYU_BMS_Melanoma_13059_P4,B12,iTru7_103_01,CAGCGATT,iTru5_117_D,GTATCGAG,NYU_BMS_Melanoma_13059,pool2,SP232079A01 +1,EP772145A02,EP772145A02,NYU_BMS_Melanoma_13059_P4,D12,iTru7_103_02,TAGTGACC,iTru5_118_D,TGCAAGAC,NYU_BMS_Melanoma_13059,pool1,EP772145A02 +1,AP771472A04,AP771472A04,NYU_BMS_Melanoma_13059_P4,F12,iTru7_103_03,CGAGACTA,iTru5_119_D,GAGTGTGT,NYU_BMS_Melanoma_13059,pool2,AP771472A04 +1,AP223470B01,AP223470B01,NYU_BMS_Melanoma_13059_P4,H12,iTru7_103_04,GACATGGT,iTru5_120_D,TAAGCGCA,NYU_BMS_Melanoma_13059,pool1,AP223470B01 +1,SP404412A02,SP404412A02,NYU_BMS_Melanoma_13059_P4,J12,iTru7_103_05,GCATGTCT,iTru5_121_D,TAGCAGGA,NYU_BMS_Melanoma_13059,pool2,SP404412A02 +1,EP772143A02,EP772143A02,NYU_BMS_Melanoma_13059_P4,L12,iTru7_103_06,ACTCCATC,iTru5_122_D,GACTACGA,NYU_BMS_Melanoma_13059,pool1,EP772143A02 +1,SP408629A01,SP408629A01,NYU_BMS_Melanoma_13059_P4,N12,iTru7_103_07,TGTGACTG,iTru5_123_D,GACGTCAT,NYU_BMS_Melanoma_13059,pool2,SP408629A01 +1,EP749735A07,EP749735A07,NYU_BMS_Melanoma_13059_P4,P12,iTru7_103_08,CGAAGAAC,iTru5_124_D,AAGAGGCA,NYU_BMS_Melanoma_13059,pool1,EP749735A07 +1,EP846485A01,EP846485A01,NYU_BMS_Melanoma_13059_P4,B14,iTru7_103_09,GGTGTCTT,iTru5_113_E,ATCGTCTC,NYU_BMS_Melanoma_13059,pool2,EP846485A01 +1,EP808109A01,EP808109A01,NYU_BMS_Melanoma_13059_P4,D14,iTru7_103_10,AAGAAGGC,iTru5_114_E,ATGGCGAT,NYU_BMS_Melanoma_13059,pool1,EP808109A01 +1,SP416130A04,SP416130A04,NYU_BMS_Melanoma_13059_P4,F14,iTru7_103_11,AGGTTCGA,iTru5_115_E,CAAGAAGC,NYU_BMS_Melanoma_13059,pool2,SP416130A04 +1,EP882752A01,EP882752A01,NYU_BMS_Melanoma_13059_P4,H14,iTru7_103_12,CATGTTCC,iTru5_116_E,CAGAACTG,NYU_BMS_Melanoma_13059,pool1,EP882752A01 +1,AP953594A02,AP953594A02,NYU_BMS_Melanoma_13059_P4,J14,iTru7_104_01,GTGCCATA,iTru5_117_E,CAGGTAAG,NYU_BMS_Melanoma_13059,pool2,AP953594A02 +1,AP046324B02,AP046324B02,NYU_BMS_Melanoma_13059_P4,L14,iTru7_104_02,CCTTGTAG,iTru5_118_E,CCTACCTA,NYU_BMS_Melanoma_13059,pool1,AP046324B02 +1,AP891020A04,AP891020A04,NYU_BMS_Melanoma_13059_P4,N14,iTru7_104_03,GCTGGATT,iTru5_119_E,CGAAGTCA,NYU_BMS_Melanoma_13059,pool2,AP891020A04 +1,EP790023A01,EP790023A01,NYU_BMS_Melanoma_13059_P4,P14,iTru7_104_04,TAACGAGG,iTru5_120_E,CGTCTTCA,NYU_BMS_Melanoma_13059,pool1,EP790023A01 +1,EP657386A01,EP657386A01,NYU_BMS_Melanoma_13059_P4,B16,iTru7_104_05,ATGGTTGC,iTru5_121_E,CTCAAGCT,NYU_BMS_Melanoma_13059,pool2,EP657386A01 +1,EP805337A01,EP805337A01,NYU_BMS_Melanoma_13059_P4,D16,iTru7_104_06,CCTATACC,iTru5_122_E,CTGCCATA,NYU_BMS_Melanoma_13059,pool1,EP805337A01 +1,EP927458A04,EP927458A04,NYU_BMS_Melanoma_13059_P4,F16,iTru7_104_07,TTAGGTCG,iTru5_123_E,CTTGCTAG,NYU_BMS_Melanoma_13059,pool2,EP927458A04 +1,AP173299B04,AP173299B04,NYU_BMS_Melanoma_13059_P4,H16,iTru7_104_08,GCAAGATC,iTru5_124_E,GTCTGCAA,NYU_BMS_Melanoma_13059,pool1,AP173299B04 +1,EP768164A02,EP768164A02,NYU_BMS_Melanoma_13059_P4,J16,iTru7_104_09,AGAGCCTT,iTru5_113_F,GCTACTCT,NYU_BMS_Melanoma_13059,pool2,EP768164A02 +1,EP886422A01,EP886422A01,NYU_BMS_Melanoma_13059_P4,L16,iTru7_104_10,GCAATGGA,iTru5_114_F,TACAGAGC,NYU_BMS_Melanoma_13059,pool1,EP886422A01 +1,AP103463B01,AP103463B01,NYU_BMS_Melanoma_13059_P4,N16,iTru7_104_11,CTGGAGTA,iTru5_115_F,GGTCGTAT,NYU_BMS_Melanoma_13059,pool2,AP103463B01 +1,AP744361A02,AP744361A02,NYU_BMS_Melanoma_13059_P4,P16,iTru7_104_12,GAACATCG,iTru5_116_F,GTCGTTAC,NYU_BMS_Melanoma_13059,pool1,AP744361A02 +1,AP065292B01,AP065292B01,NYU_BMS_Melanoma_13059_P4,B18,iTru7_105_01,GCACAACT,iTru5_117_F,TTCACGGA,NYU_BMS_Melanoma_13059,pool2,AP065292B01 +1,SP257517A04,SP257517A04,NYU_BMS_Melanoma_13059_P4,D18,iTru7_105_02,TTCTCTCG,iTru5_118_F,TGCTTGCT,NYU_BMS_Melanoma_13059,pool1,SP257517A04 +1,EP790021A04,EP790021A04,NYU_BMS_Melanoma_13059_P4,F18,iTru7_105_03,AACGGTCA,iTru5_119_F,TCTTACGG,NYU_BMS_Melanoma_13059,pool2,EP790021A04 +1,EP675075A04,EP675075A04,NYU_BMS_Melanoma_13059_P4,H18,iTru7_105_04,ACAGACCT,iTru5_120_F,TCCTCATG,NYU_BMS_Melanoma_13059,pool1,EP675075A04 +1,SP388683A02,SP388683A02,NYU_BMS_Melanoma_13059_P4,J18,iTru7_105_05,TCTCTTCC,iTru5_121_F,GATGTCGA,NYU_BMS_Melanoma_13059,pool2,SP388683A02 +1,SP232309A01,SP232309A01,NYU_BMS_Melanoma_13059_P4,L18,iTru7_105_06,AGTGTTGG,iTru5_122_F,GAAGTGCT,NYU_BMS_Melanoma_13059,pool1,SP232309A01 +1,EP899038A04,EP899038A04,NYU_BMS_Melanoma_13059_P4,N18,iTru7_105_07,TGGCATGT,iTru5_123_F,TCACTCGA,NYU_BMS_Melanoma_13059,pool2,EP899038A04 +1,EP636802A01,EP636802A01,NYU_BMS_Melanoma_13059_P4,P18,iTru7_105_08,AGAAGCGT,iTru5_124_F,ACGCAGTA,NYU_BMS_Melanoma_13059,pool1,EP636802A01 +1,AP046327B02,AP046327B02,NYU_BMS_Melanoma_13059_P4,B20,iTru7_105_09,AGCGGAAT,iTru5_113_G,ATCTCCTG,NYU_BMS_Melanoma_13059,pool2,AP046327B02 +1,EP905975A04,EP905975A04,NYU_BMS_Melanoma_13059_P4,D20,iTru7_105_10,TAACCGGT,iTru5_114_G,ATGTGGAC,NYU_BMS_Melanoma_13059,pool1,EP905975A04 +1,SP410796A02,SP410796A02,NYU_BMS_Melanoma_13059_P4,F20,iTru7_105_11,CATGGAAC,iTru5_115_G,CAAGCCAA,NYU_BMS_Melanoma_13059,pool2,SP410796A02 +1,EP784608A01,EP784608A01,NYU_BMS_Melanoma_13059_P4,H20,iTru7_105_12,ATGGTCCA,iTru5_116_G,CAGACGTT,NYU_BMS_Melanoma_13059,pool1,EP784608A01 +1,EP808105A01,EP808105A01,NYU_BMS_Melanoma_13059_P4,J20,iTru7_106_01,CTTCTGAG,iTru5_117_G,CATACTCG,NYU_BMS_Melanoma_13059,pool2,EP808105A01 +1,SP331134A04,SP331134A04,NYU_BMS_Melanoma_13059_P4,L20,iTru7_106_02,AACCGAAG,iTru5_118_G,CCTGTCAA,NYU_BMS_Melanoma_13059,pool1,SP331134A04 +1,EP718688A01,EP718688A01,NYU_BMS_Melanoma_13059_P4,N20,iTru7_106_03,TTCGTACC,iTru5_119_G,CGAGTTAG,NYU_BMS_Melanoma_13059,pool2,EP718688A01 +1,SP232270A02,SP232270A02,NYU_BMS_Melanoma_13059_P4,P20,iTru7_106_04,CTGTTAGG,iTru5_120_G,CTAACCTG,NYU_BMS_Melanoma_13059,pool1,SP232270A02 +1,EP970001A01,EP970001A01,NYU_BMS_Melanoma_13059_P4,B22,iTru7_106_05,CACAAGTC,iTru5_121_G,CTCCTAGT,NYU_BMS_Melanoma_13059,pool2,EP970001A01 +1,EP001624B01,EP001624B01,NYU_BMS_Melanoma_13059_P4,D22,iTru7_106_06,TCTTGACG,iTru5_122_G,CTGTACCA,NYU_BMS_Melanoma_13059,pool1,EP001624B01 +1,EP868682A01,EP868682A01,NYU_BMS_Melanoma_13059_P4,F22,iTru7_106_07,CGTCTTGT,iTru5_123_G,GCTACAAC,NYU_BMS_Melanoma_13059,pool2,EP868682A01 +1,EP927462A02,EP927462A02,NYU_BMS_Melanoma_13059_P4,H22,iTru7_106_08,CGTGATCA,iTru5_124_G,GTTCTTCG,NYU_BMS_Melanoma_13059,pool1,EP927462A02 +1,C3,C3,NYU_BMS_Melanoma_13059_P4,J22,iTru7_106_09,CCAAGTTG,iTru5_113_H,GAGAGTAC,NYU_BMS_Melanoma_13059,pool2,C3 +1,EP890158A02,EP890158A02,NYU_BMS_Melanoma_13059_P4,L22,iTru7_106_10,GTACCTTG,iTru5_114_H,GACACAGT,NYU_BMS_Melanoma_13059,pool1,EP890158A02 +1,EP023801B04,EP023801B04,NYU_BMS_Melanoma_13059_P4,N22,iTru7_106_11,GACTATGC,iTru5_115_H,TTGCTTGG,NYU_BMS_Melanoma_13059,pool2,EP023801B04 +1,EP400447B04,EP400447B04,NYU_BMS_Melanoma_13059_P4,P22,iTru7_106_12,TGGATCAC,iTru5_116_H,GTAGTACC,NYU_BMS_Melanoma_13059,pool1,EP400447B04 +1,EP385379B01,EP385379B01,NYU_BMS_Melanoma_13059_P4,B24,iTru7_107_01,CTCTGGTT,iTru5_117_H,TTCGGCTA,NYU_BMS_Melanoma_13059,pool2,EP385379B01 +1,EP385387B01,EP385387B01,NYU_BMS_Melanoma_13059_P4,D24,iTru7_107_02,GTTCATGG,iTru5_118_H,TGCACTTG,NYU_BMS_Melanoma_13059,pool1,EP385387B01 +1,EP385384B01,EP385384B01,NYU_BMS_Melanoma_13059_P4,F24,iTru7_107_03,GCTGTAAG,iTru5_119_H,TAGAACGC,NYU_BMS_Melanoma_13059,pool2,EP385384B01 +1,SP754514A04,SP754514A04,NYU_BMS_Melanoma_13059_P4,H24,iTru7_107_04,GTCGAAGA,iTru5_120_H,GATTGTCC,NYU_BMS_Melanoma_13059,pool1,SP754514A04 +1,SP415025A01,SP415025A01,NYU_BMS_Melanoma_13059_P4,J24,iTru7_107_05,GAGCTCAA,iTru5_121_H,GATGCTAC,NYU_BMS_Melanoma_13059,pool2,SP415025A01 +1,SP415023A02,SP415023A02,NYU_BMS_Melanoma_13059_P4,L24,iTru7_107_06,TGAACCTG,iTru5_122_H,GAACGGTT,NYU_BMS_Melanoma_13059,pool1,SP415023A02 +1,EP400448B04,EP400448B04,NYU_BMS_Melanoma_13059_P4,N24,iTru7_107_07,CCGACTAT,iTru5_123_H,CTCTTGTC,NYU_BMS_Melanoma_13059,pool2,EP400448B04 +1,EP479894B04,EP479894B04,NYU_BMS_Melanoma_13059_P4,P24,iTru7_107_08,AGCTAACC,iTru5_124_H,AACGCCTT,NYU_BMS_Melanoma_13059,pool1,EP479894B04,,,,,,,,,,, +,,,,,,,,,,, +[Bioinformatics],,,,,,,,,,, +Sample_Project,QiitaID,BarcodesAreRC,ForwardAdapter,ReverseAdapter,HumanFiltering,library_construction_protocol,experiment_design_description,,,, +NYU_BMS_Melanoma_13059,13059,False,AACC,GGTT,False,Nextera,Equipment,,,, +Feist_11661,11661,False,AACC,GGTT,False,Nextera,Equipment,,,, +Gerwick_6123,6123,False,AACC,GGTT,True,Nextera,Equipment,,,, +,,,,,,,,,,, +[Contact],,,,,,,,,,, +Email,Sample_Project,,,,,,,,,, +test@lol.com,Feist_11661,,,,,,,,,, +,,,,,,,,,,, diff --git a/tests/data/bad_configuration.json b/tests/data/bad_configuration.json new file mode 100644 index 00000000..80d0f852 --- /dev/null +++ b/tests/data/bad_configuration.json @@ -0,0 +1,53 @@ +{ + "configuration": { + "pipeline": { + }, + "bcl2fastq": { + "nodes": 1, + "nprocs": 16, + "queue": "qiita", + "wallclock_time_in_minutes": 216, + "modules_to_load": ["bcl2fastq_2.20.0.422"], + "executable_path": "bcl2fastq", + "per_process_memory_limit": "10gb" + }, + "bcl-convert": { + "nodes": 1, + "nprocs": 16, + "queue": "qiita", + "wallclock_time_in_minutes": 216, + "modules_to_load": ["bclconvert_3.7.5"], + "executable_path": "bcl-convert", + "per_process_memory_limit": "10gb" + }, + "qc": { + "nodes": 1, + "nprocs": 16, + "queue": "qiita", + "wallclock_time_in_minutes": 60, + "mmi_db": "/databases/minimap2/human-phix-db.mmi", + "modules_to_load": ["fastp_0.20.1", "samtools_1.12", "minimap2_2.18"], + "fastp_executable_path": "fastp", + "minimap2_executable_path": "minimap2", + "samtools_executable_path": "samtools", + "job_total_memory_limit": "20gb", + "job_pool_size": 30 + }, + "seqpro": { + "seqpro_path": "seqpro", + "modules_to_load": [] + }, + "fastqc": { + "nodes": 1, + "nprocs": 16, + "queue": "qiita", + "nthreads": 16, + "wallclock_time_in_minutes": 60, + "modules_to_load": ["fastqc_0.11.5"], + "fastqc_executable_path": "fastqc", + "multiqc_executable_path": "multiqc", + "job_total_memory_limit": "20gb", + "job_pool_size": 30 + } + } +} diff --git a/qp_klp/tests/data/configuration_profiles/iseq_metagenomic.json b/tests/data/configuration_profiles/iseq_metagenomic.json similarity index 100% rename from qp_klp/tests/data/configuration_profiles/iseq_metagenomic.json rename to tests/data/configuration_profiles/iseq_metagenomic.json diff --git a/qp_klp/tests/data/configuration_profiles/miseq_amplicon.json b/tests/data/configuration_profiles/miseq_amplicon.json similarity index 100% rename from qp_klp/tests/data/configuration_profiles/miseq_amplicon.json rename to tests/data/configuration_profiles/miseq_amplicon.json diff --git a/qp_klp/tests/data/configuration_profiles/miseq_metagenomic.json b/tests/data/configuration_profiles/miseq_metagenomic.json similarity index 82% rename from qp_klp/tests/data/configuration_profiles/miseq_metagenomic.json rename to tests/data/configuration_profiles/miseq_metagenomic.json index c43d20a3..d99e65e8 100644 --- a/qp_klp/tests/data/configuration_profiles/miseq_metagenomic.json +++ b/tests/data/configuration_profiles/miseq_metagenomic.json @@ -27,9 +27,7 @@ "nprocs": 16, "queue": "qiita", "wallclock_time_in_minutes": 216, - "modules_to_load": [ - "bclconvert_3.7.5" - ], + "modules_to_load": ["bclconvert_3.7.5"], "executable_path": "bcl-convert", "per_process_memory_limit": "10gb" }, @@ -38,9 +36,7 @@ "nprocs": 62, "queue": "qiita", "wallclock_time_in_minutes": 1022, - "modules_to_load": [ - "bcl2fastq_2.20.0.222" - ], + "modules_to_load": ["bcl2fastq_2.20.0.222"], "executable_path": "bcl2fastq", "per_process_memory_limit": "100gb" }, @@ -49,12 +45,11 @@ "cpus_per_task": 32, "queue": "qiita", "wallclock_time_in_minutes": 2028, - "minimap2_databases": ["/databases/minimap2/db_1.mmi", "/databases/minimap2/db_2.mmi"], - "modules_to_load": [ - "fastp_0.20.1", - "samtools_1.12", - "minimap2_2.18" + "minimap2_databases": [ + "/databases/minimap2/db_1.mmi", + "/databases/minimap2/db_2.mmi" ], + "modules_to_load": ["fastp_0.20.1", "samtools_1.12", "minimap2_2.18"], "fastp_executable_path": "fastp", "minimap2_executable_path": "minimap2", "samtools_executable_path": "samtools", @@ -79,12 +74,10 @@ "queue": "qiita", "nthreads": 62, "wallclock_time_in_minutes": 220, - "modules_to_load": [ - "fastqc_0.11.5" - ], + "modules_to_load": ["fastqc_0.11.5"], "fastqc_executable_path": "fastqc", "multiqc_executable_path": "multiqc", - "multiqc_config_file_path": "/home/user/qp_klp/tests/data/multiqc-bclconvert-config.yaml", + "multiqc_config_file_path": "/home/user/tests/data/multiqc-bclconvert-config.yaml", "job_total_memory_limit": "20gb", "job_pool_size": 120, "job_max_array_length": 2000 diff --git a/qp_klp/tests/data/configuration_profiles/miseq_metatranscriptomic.json b/tests/data/configuration_profiles/miseq_metatranscriptomic.json similarity index 77% rename from qp_klp/tests/data/configuration_profiles/miseq_metatranscriptomic.json rename to tests/data/configuration_profiles/miseq_metatranscriptomic.json index c7dbc9ed..5d0dbba3 100644 --- a/qp_klp/tests/data/configuration_profiles/miseq_metatranscriptomic.json +++ b/tests/data/configuration_profiles/miseq_metatranscriptomic.json @@ -8,9 +8,7 @@ "nprocs": 16, "queue": "qiita", "wallclock_time_in_minutes": 216, - "modules_to_load": [ - "bclconvert_3.7.5" - ], + "modules_to_load": ["bclconvert_3.7.5"], "executable_path": "bcl-convert", "per_process_memory_limit": "10gb" }, @@ -19,9 +17,7 @@ "nprocs": 62, "queue": "qiita", "wallclock_time_in_minutes": 1022, - "modules_to_load": [ - "bcl2fastq_2.20.0.222" - ], + "modules_to_load": ["bcl2fastq_2.20.0.222"], "executable_path": "bcl2fastq", "per_process_memory_limit": "100gb" }, @@ -30,12 +26,11 @@ "cpus_per_task": 32, "queue": "qiita", "wallclock_time_in_minutes": 2028, - "minimap2_databases": ["/databases/minimap2/db_1.mmi", "/databases/minimap2/db_2.mmi"], - "modules_to_load": [ - "fastp_0.20.1", - "samtools_1.12", - "minimap2_2.18" + "minimap2_databases": [ + "/databases/minimap2/db_1.mmi", + "/databases/minimap2/db_2.mmi" ], + "modules_to_load": ["fastp_0.20.1", "samtools_1.12", "minimap2_2.18"], "fastp_executable_path": "fastp", "minimap2_executable_path": "minimap2", "samtools_executable_path": "samtools", @@ -60,12 +55,10 @@ "queue": "qiita", "nthreads": 62, "wallclock_time_in_minutes": 220, - "modules_to_load": [ - "fastqc_0.11.5" - ], + "modules_to_load": ["fastqc_0.11.5"], "fastqc_executable_path": "fastqc", "multiqc_executable_path": "multiqc", - "multiqc_config_file_path": "sequence_processing_pipeline/multiqc-bclconvert-config.yaml", + "multiqc_config_file_path": "tests/data/multiqc-bclconvert-config.yaml", "job_total_memory_limit": "20gb", "job_pool_size": 120, "job_max_array_length": 2000 diff --git a/qp_klp/tests/data/configuration_profiles/novaseq_amplicon.json b/tests/data/configuration_profiles/novaseq_amplicon.json similarity index 77% rename from qp_klp/tests/data/configuration_profiles/novaseq_amplicon.json rename to tests/data/configuration_profiles/novaseq_amplicon.json index 10aa6952..f5470868 100644 --- a/qp_klp/tests/data/configuration_profiles/novaseq_amplicon.json +++ b/tests/data/configuration_profiles/novaseq_amplicon.json @@ -8,9 +8,7 @@ "nprocs": 64, "queue": "qiita", "wallclock_time_in_minutes": 1024, - "modules_to_load": [ - "bcl2fastq_2.20.0.422" - ], + "modules_to_load": ["bcl2fastq_2.20.0.422"], "executable_path": "bcl2fastq", "per_process_memory_limit": "100gb" }, @@ -19,12 +17,11 @@ "cpus_per_task": 32, "queue": "qiita", "wallclock_time_in_minutes": 2048, - "minimap2_databases": ["/databases/minimap2/db_1.mmi", "/databases/minimap2/db_2.mmi"], - "modules_to_load": [ - "fastp_0.20.1", - "samtools_1.12", - "minimap2_2.18" + "minimap2_databases": [ + "/databases/minimap2/db_1.mmi", + "/databases/minimap2/db_2.mmi" ], + "modules_to_load": ["fastp_0.20.1", "samtools_1.12", "minimap2_2.18"], "fastp_executable_path": "fastp", "minimap2_executable_path": "minimap2", "samtools_executable_path": "samtools", @@ -48,12 +45,10 @@ "queue": "qiita", "nthreads": 64, "wallclock_time_in_minutes": 240, - "modules_to_load": [ - "fastqc_0.11.5" - ], + "modules_to_load": ["fastqc_0.11.5"], "fastqc_executable_path": "fastqc", "multiqc_executable_path": "multiqc", - "multiqc_config_file_path": "sequence_processing_pipeline/multiqc-bclconvert-config.yaml", + "multiqc_config_file_path": "tests/data/multiqc-bclconvert-config.yaml", "job_total_memory_limit": "20gb", "job_pool_size": 120, "job_max_array_length": 4000 diff --git a/qp_klp/tests/data/configuration_profiles/novaseq_metagenomic.json b/tests/data/configuration_profiles/novaseq_metagenomic.json similarity index 82% rename from qp_klp/tests/data/configuration_profiles/novaseq_metagenomic.json rename to tests/data/configuration_profiles/novaseq_metagenomic.json index 75c98a9c..5db46889 100644 --- a/qp_klp/tests/data/configuration_profiles/novaseq_metagenomic.json +++ b/tests/data/configuration_profiles/novaseq_metagenomic.json @@ -27,9 +27,7 @@ "nprocs": 16, "queue": "qiita", "wallclock_time_in_minutes": 216, - "modules_to_load": [ - "bclconvert_3.7.5" - ], + "modules_to_load": ["bclconvert_3.7.5"], "executable_path": "bcl-convert", "per_process_memory_limit": "10gb" }, @@ -38,9 +36,7 @@ "nprocs": 64, "queue": "qiita", "wallclock_time_in_minutes": 1024, - "modules_to_load": [ - "bcl2fastq_2.20.0.422" - ], + "modules_to_load": ["bcl2fastq_2.20.0.422"], "executable_path": "bcl2fastq", "per_process_memory_limit": "100gb" }, @@ -49,12 +45,11 @@ "cpus_per_task": 32, "queue": "qiita", "wallclock_time_in_minutes": 2048, - "minimap2_databases": ["/databases/minimap2/db_1.mmi", "/databases/minimap2/db_2.mmi"], - "modules_to_load": [ - "fastp_0.20.1", - "samtools_1.12", - "minimap2_2.18" + "minimap2_databases": [ + "/databases/minimap2/db_1.mmi", + "/databases/minimap2/db_2.mmi" ], + "modules_to_load": ["fastp_0.20.1", "samtools_1.12", "minimap2_2.18"], "fastp_executable_path": "fastp", "minimap2_executable_path": "minimap2", "samtools_executable_path": "samtools", @@ -78,12 +73,10 @@ "queue": "qiita", "nthreads": 64, "wallclock_time_in_minutes": 240, - "modules_to_load": [ - "fastqc_0.11.5" - ], + "modules_to_load": ["fastqc_0.11.5"], "fastqc_executable_path": "fastqc", "multiqc_executable_path": "multiqc", - "multiqc_config_file_path": "sequence_processing_pipeline/multiqc-bclconvert-config.yaml", + "multiqc_config_file_path": "tests/data/multiqc-bclconvert-config.yaml", "job_total_memory_limit": "20gb", "job_pool_size": 120, "job_max_array_length": 4000 diff --git a/qp_klp/tests/data/configuration_profiles/novaseq_metatranscriptomic.json b/tests/data/configuration_profiles/novaseq_metatranscriptomic.json similarity index 76% rename from qp_klp/tests/data/configuration_profiles/novaseq_metatranscriptomic.json rename to tests/data/configuration_profiles/novaseq_metatranscriptomic.json index 449638a3..7a4a4aba 100644 --- a/qp_klp/tests/data/configuration_profiles/novaseq_metatranscriptomic.json +++ b/tests/data/configuration_profiles/novaseq_metatranscriptomic.json @@ -8,9 +8,7 @@ "nprocs": 16, "queue": "qiita", "wallclock_time_in_minutes": 216, - "modules_to_load": [ - "bcl2fastq_2.20.0.422" - ], + "modules_to_load": ["bcl2fastq_2.20.0.422"], "executable_path": "bcl2fastq", "per_process_memory_limit": "10gb" }, @@ -19,9 +17,7 @@ "nprocs": 16, "queue": "qiita", "wallclock_time_in_minutes": 216, - "modules_to_load": [ - "bclconvert_3.7.5" - ], + "modules_to_load": ["bclconvert_3.7.5"], "executable_path": "bcl-convert", "per_process_memory_limit": "10gb" }, @@ -30,15 +26,9 @@ "nprocs": 16, "queue": "qiita", "wallclock_time_in_minutes": 60, - "minimap2_databases": [ - "/databases/minimap2/human-phix-db.mmi" - ], + "minimap2_databases": ["/databases/minimap2/human-phix-db.mmi"], "kraken2_database": "/databases/minimap2/hp_kraken-db.mmi", - "modules_to_load": [ - "fastp_0.20.1", - "samtools_1.12", - "minimap2_2.18" - ], + "modules_to_load": ["fastp_0.20.1", "samtools_1.12", "minimap2_2.18"], "fastp_executable_path": "fastp", "minimap2_executable_path": "minimap2", "samtools_executable_path": "samtools", @@ -51,12 +41,11 @@ "cpus_per_task": 8, "queue": "qiita", "wallclock_time_in_minutes": 240, - "minimap2_databases": ["/databases/minimap2/db_1.mmi", "/databases/minimap2/db_2.mmi"], - "modules_to_load": [ - "fastp_0.20.1", - "samtools_1.12", - "minimap2_2.18" + "minimap2_databases": [ + "/databases/minimap2/db_1.mmi", + "/databases/minimap2/db_2.mmi" ], + "modules_to_load": ["fastp_0.20.1", "samtools_1.12", "minimap2_2.18"], "fastp_executable_path": "fastp", "minimap2_executable_path": "minimap2", "samtools_executable_path": "samtools", @@ -80,12 +69,10 @@ "queue": "qiita", "nthreads": 16, "wallclock_time_in_minutes": 60, - "modules_to_load": [ - "fastqc_0.11.5" - ], + "modules_to_load": ["fastqc_0.11.5"], "fastqc_executable_path": "fastqc", "multiqc_executable_path": "multiqc", - "multiqc_config_file_path": "sequence_processing_pipeline/multiqc-bclconvert-config.yaml", + "multiqc_config_file_path": "tests/data/multiqc-bclconvert-config.yaml", "job_total_memory_limit": "20gb", "job_pool_size": 30, "job_max_array_length": 1000 diff --git a/qp_klp/tests/data/dummy.fastq.gz b/tests/data/dummy.fastq.gz similarity index 100% rename from qp_klp/tests/data/dummy.fastq.gz rename to tests/data/dummy.fastq.gz diff --git a/tests/data/duplicate_sample-sample-sheet.csv b/tests/data/duplicate_sample-sample-sheet.csv new file mode 100644 index 00000000..e81256e6 --- /dev/null +++ b/tests/data/duplicate_sample-sample-sheet.csv @@ -0,0 +1,816 @@ +[Header],,,,,,,,,,, +IEMFileVersion,4,,,,,,,,,, +SheetType,standard_metag,,,,,,,,,, +SheetVersion,100,,,,,,,,,, +Investigator Name,Knight,,,,,,,,,, +Experiment Name,RKL0042,,,,,,,,,, +Date,2020-02-26,,,,,,,,,, +Workflow,GenerateFASTQ,,,,,,,,,, +Application,FASTQ Only,,,,,,,,,, +Assay,Metagenomic,,,,,,,,,, +Description,,,,,,,,,,, +Chemistry,Default,,,,,,,,,, +,,,,,,,,,,, +[Reads],,,,,,,,,,, +150,,,,,,,,,,, +150,,,,,,,,,,, +,,,,,,,,,,, +[Settings],,,,,,,,,,, +ReverseComplement,0,,,,,,,,,, +,,,,,,,,,,, +[Data],,,,,,,,,,, +Lane,Sample_ID,Sample_Name,Sample_Plate,well_id_384,I7_Index_ID,index,I5_Index_ID,index2,Sample_Project,syndna_pool_number,Well_description +1,CDPH-SAL_Salmonella_Typhi_MDL-143,CDPH-SAL.Salmonella.Typhi.MDL-143,Feist_11661_P40,A1,iTru7_107_07,CCGACTAT,iTru5_01_A,ACCGACAA,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-143 +1,CDPH-SAL_Salmonella_Typhi_MDL-144,CDPH-SAL.Salmonella.Typhi.MDL-144,Feist_11661_P40,C1,iTru7_107_08,CCGACTAT,iTru5_02_A,CTTCGCAA,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-144 +1,CDPH-SAL_Salmonella_Typhi_MDL-145,CDPH-SAL.Salmonella.Typhi.MDL-145,Feist_11661_P40,E1,iTru7_107_09,GCCTTGTT,iTru5_03_A,AACACCAC,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-145 +1,CDPH-SAL_Salmonella_Typhi_MDL-146,CDPH-SAL.Salmonella.Typhi.MDL-146,Feist_11661_P40,G1,iTru7_107_10,AACTTGCC,iTru5_04_A,CGTATCTC,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-146 +1,CDPH-SAL_Salmonella_Typhi_MDL-147,CDPH-SAL.Salmonella.Typhi.MDL-147,Feist_11661_P40,I1,iTru7_107_11,CAATGTGG,iTru5_05_A,GGTACGAA,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-147 +1,CDPH-SAL_Salmonella_Typhi_MDL-148,CDPH-SAL.Salmonella.Typhi.MDL-148,Feist_11661_P40,K1,iTru7_107_12,AAGGCTGA,iTru5_06_A,CGATCGAT,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-148 +1,CDPH-SAL_Salmonella_Typhi_MDL-149,CDPH-SAL.Salmonella.Typhi.MDL-149,Feist_11661_P40,M1,iTru7_108_01,TTACCGAG,iTru5_07_A,AAGACACC,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-149 +1,CDPH-SAL_Salmonella_Typhi_MDL-150,CDPH-SAL.Salmonella.Typhi.MDL-150,Feist_11661_P40,O1,iTru7_108_02,GTCCTAAG,iTru5_08_A,CATCTGCT,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-150 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+1,JM-Metabolic__GN0_2183,JM-Metabolic.GN0.2183,Feist_11661_P41_diluted,A22,iTru7_208_03,GTCTTGCA,iTru5_21_G,CGCAACTA,Feist_11661,pool1,JM-Metabolic__GN0_2183 +1,JM-Metabolic__GN0_2215,JM-Metabolic.GN0.2215,Feist_11661_P41_diluted,C22,iTru7_208_04,CAAGTGCA,iTru5_22_G,GATCAGAC,Feist_11661,pool2,JM-Metabolic__GN0_2215 +1,JM-Metabolic__GN0_2254,JM-Metabolic.GN0.2254,Feist_11661_P41_diluted,E22,iTru7_208_05,TCCGAGTT,iTru5_23_G,ATTCCGCT,Feist_11661,pool1,JM-Metabolic__GN0_2254 +1,JM-Metabolic__GN0_2277,JM-Metabolic.GN0.2277,Feist_11661_P41_diluted,G22,iTru7_208_06,ACCTAAGG,iTru5_24_G,ATCCTTCC,Feist_11661,pool2,JM-Metabolic__GN0_2277 +1,JM-Metabolic__GN0_2290,JM-Metabolic.GN0.2290,Feist_11661_P41,I22,iTru7_208_07,TTGGACGT,iTru5_13_H,GCTTCACA,Feist_11661,pool1,JM-Metabolic__GN0_2290 +1,JM-Metabolic__GN0_2337,JM-Metabolic.GN0.2337,Feist_11661_P41_diluted,K22,iTru7_208_08,GATAGCGA,iTru5_14_H,CTTCGGTT,Feist_11661,pool2,JM-Metabolic__GN0_2337 +1,JM-Metabolic__GN0_2317,JM-Metabolic.GN0.2317,Feist_11661_P41_diluted,M22,iTru7_208_09,TTGGTGAG,iTru5_15_H,CATGGATC,Feist_11661,pool1,JM-Metabolic__GN0_2317 +1,JM-Metabolic__GN0_2354,JM-Metabolic.GN0.2354,Feist_11661_P41_diluted,O22,iTru7_208_10,AACTGGTG,iTru5_16_H,GTCAACAG,Feist_11661,pool2,JM-Metabolic__GN0_2354 +1,JM-Metabolic__GN0_2375,JM-Metabolic.GN0.2375,Feist_11661_P41_diluted,A24,iTru7_208_11,TAGCCGAA,iTru5_17_H,AATTCCGG,Feist_11661,pool1,JM-Metabolic__GN0_2375 +1,JM-Metabolic__GN0_2380,JM-Metabolic.GN0.2380,Feist_11661_P41_diluted,C24,iTru7_208_12,TGCGAACT,iTru5_18_H,GGCGAATA,Feist_11661,pool2,JM-Metabolic__GN0_2380 +1,JM-Metabolic__GN0_2393,JM-Metabolic.GN0.2393,Feist_11661_P41_diluted,E24,iTru7_209_01,GACTTAGG,iTru5_19_H,AGGAGGTT,Feist_11661,pool1,JM-Metabolic__GN0_2393 +1,JM-Metabolic__GN0_2404,JM-Metabolic.GN0.2404,Feist_11661_P41_diluted,G24,iTru7_209_02,ACACCAGT,iTru5_20_H,ACTCTGAG,Feist_11661,pool2,JM-Metabolic__GN0_2404 +1,5B,5B,Gerwick_tubes,I24,iTru7_209_03,CCTGATTG,iTru5_21_H,GCCTTCTT,Gerwick_6123,pool1,5B +1,6A,6A,Gerwick_tubes,K24,iTru7_209_04,TTGTGTGC,iTru5_22_H,TGGACCAT,Gerwick_6123,pool2,6A +1,BLANK_41_12G,BLANK.41.12G,Feist_11661_P41,M24,iTru7_209_05,TACCACAG,iTru5_23_H,GCATAGTC,Gerwick_6123,pool1,BLANK.41.12G +1,BLANK_41_12H,BLANK.41.12H,Feist_11661_P41,O24,iTru7_209_06,ATTCGAGG,iTru5_24_H,TACACACG,Feist_11661,pool2,BLANK.41.12H +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_14,Deoxyribose.PALE.ALE.MG1655.BOP27.4.14,Feist_11661_P42,B1,iTru7_209_07,GCACGTAA,iTru5_101_A,AACAACCG,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_BOP27_4_14 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_23,Deoxyribose.PALE.ALE.MG1655.BOP27.4.23,Feist_11661_P42,D1,iTru7_209_08,GTGTGACA,iTru5_102_A,AAGCCTGA,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_BOP27_4_23 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_48,Deoxyribose.PALE.ALE.MG1655.BOP27.4.48,Feist_11661_P42,F1,iTru7_209_09,CTGGTTCT,iTru5_103_A,AAGGACCA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_BOP27_4_48 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_6_21,Deoxyribose.PALE.ALE.MG1655.BOP27.6.21,Feist_11661_P42,H1,iTru7_209_10,ACTGTGTC,iTru5_104_A,ACAACGTG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_BOP27_6_21 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_6_35,Deoxyribose.PALE.ALE.MG1655.BOP27.6.35,Feist_11661_P42,J1,iTru7_209_11,CCATACGT,iTru5_105_A,ACGAACGA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_BOP27_6_35 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_13,Deoxyribose.PALE.ALE.MG1655.BOP27.10.13,Feist_11661_P42,L1,iTru7_209_12,GGTACTAC,iTru5_106_A,ACGTCCAA,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_BOP27_10_13 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_28,Deoxyribose.PALE.ALE.MG1655.BOP27.10.28,Feist_11661_P42,N1,iTru7_210_01,CAGTCCAA,iTru5_107_A,ACTGGTGT,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_BOP27_10_28 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_51,Deoxyribose.PALE.ALE.MG1655.BOP27.10.51,Feist_11661_P42,P1,iTru7_210_02,TCGTAGTC,iTru5_108_A,AGATCGTC,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_BOP27_10_51 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_19,Deoxyribose.PALE.ALE.MG1655.Lib4.18.19,Feist_11661_P42,B3,iTru7_210_03,TCGAGTGA,iTru5_109_A,AGCGAGAT,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_18_19 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_59,Deoxyribose.PALE.ALE.MG1655.Lib4.18.59,Feist_11661_P42,D3,iTru7_210_04,TGTAGCCA,iTru5_110_A,AGGATAGC,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_18_59 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_35,Deoxyribose.PALE.ALE.MG1655.Lib4.18.35,Feist_11661_P42,F3,iTru7_210_05,TGCAGGTA,iTru5_111_A,AGGTGTTG,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_18_35 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_16,Deoxyribose.PALE.ALE.MG1655.Lib4.20.16,Feist_11661_P42,H3,iTru7_210_06,CTAGGTGA,iTru5_112_A,AGTCTTGG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_20_16 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_43,Deoxyribose.PALE.ALE.MG1655.Lib4.20.43,Feist_11661_P42,J3,iTru7_210_07,CTCCATGT,iTru5_101_B,GGTTGGTA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_20_43 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_71,Deoxyribose.PALE.ALE.MG1655.Lib4.20.71,Feist_11661_P42,L3,iTru7_210_08,CTTACAGC,iTru5_102_B,GGAGGAAT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_20_71 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_16,Deoxyribose.PALE.ALE.MG1655.Lib4.22.16,Feist_11661_P42,N3,iTru7_210_09,CGTATTCG,iTru5_103_B,GTAAGGTG,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_22_16 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_28,Deoxyribose.PALE.ALE.MG1655.Lib4.22.28,Feist_11661_P42,P3,iTru7_210_10,ATTCTGGC,iTru5_104_B,GGTGTACA,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_22_28 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_52,Deoxyribose.PALE.ALE.MG1655.Lib4.22.52,Feist_11661_P42,B5,iTru7_210_11,TACCAGGA,iTru5_105_B,GGATGTAG,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_22_52 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_9,Deoxyribose.PALE.ALE.MG1655.Lib4.24.9,Feist_11661_P42,D5,iTru7_210_12,TACATCGG,iTru5_106_B,GTCCTGTT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_24_9 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_24,Deoxyribose.PALE.ALE.MG1655.Lib4.24.24,Feist_11661_P42,F5,iTru7_301_01,GTGGTGTT,iTru5_107_B,GTACCACA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_24_24 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_52,Deoxyribose.PALE.ALE.MG1655.Lib4.24.52,Feist_11661_P42,H5,iTru7_301_02,CGCATGAT,iTru5_108_B,GATCTCAG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_24_52 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_6,Deoxyribose.PALE.ALE.MG1655.Lib4.26.6,Feist_11661_P42,J5,iTru7_301_03,AGTCGACA,iTru5_109_B,GAGCTCTA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_26_6 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_27,Deoxyribose.PALE.ALE.MG1655.Lib4.26.27,Feist_11661_P42,L5,iTru7_301_04,GTGAGCTT,iTru5_110_B,TACTAGCG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_26_27 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_69,Deoxyribose.PALE.ALE.MG1655.Lib4.26.69,Feist_11661_P42,N5,iTru7_301_05,GACATTCC,iTru5_111_B,GCACACAA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_26_69 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_13,Deoxyribose.PALE.ALE.MG1655.Lib4.28.13,Feist_11661_P42,P5,iTru7_301_06,AGTTCGTC,iTru5_112_B,GAATCACC,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_28_13 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_28,Deoxyribose.PALE.ALE.MG1655.Lib4.28.28,Feist_11661_P42,B7,iTru7_301_07,TAATGCCG,iTru5_101_C,AACAGCGA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_28_28 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_53,Deoxyribose.PALE.ALE.MG1655.Lib4.28.53,Feist_11661_P42,D7,iTru7_301_08,CGACCATT,iTru5_102_C,AAGCGACT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_28_53 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_7,Deoxyribose.PALE.ALE.MG1655.Lib4.30.7,Feist_11661_P42,F7,iTru7_301_09,CTGAAGCT,iTru5_103_C,AAGGCGTA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_30_7 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_22,Deoxyribose.PALE.ALE.MG1655.Lib4.30.22,Feist_11661_P42,H7,iTru7_301_10,TTGAGGCA,iTru5_104_C,ACACCGAT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_30_22 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_60,Deoxyribose.PALE.ALE.MG1655.Lib4.30.60,Feist_11661_P42,J7,iTru7_301_11,GATCGAGT,iTru5_105_C,ACGAATCC,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_30_60 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_6,Deoxyribose.PALE.ALE.MG1655.Lib4.32.6,Feist_11661_P42,L7,iTru7_301_12,ATACTCCG,iTru5_106_C,ACTACGGT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_32_6 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_20,Deoxyribose.PALE.ALE.MG1655.Lib4.32.20,Feist_11661_P42,N7,iTru7_302_01,AAGTCCGT,iTru5_107_C,AGAAGCCT,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_32_20 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_56,Deoxyribose.PALE.ALE.MG1655.Lib4.32.56,Feist_11661_P42,P7,iTru7_302_02,TAGCGTCT,iTru5_108_C,AGATTGCG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_32_56 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.1.24,Feist_11661_P42,B9,iTru7_302_03,TGACGCAT,iTru5_109_C,AGCGTGTA,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_24 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.1.57,Feist_11661_P42,D9,iTru7_302_04,AGCGTGTT,iTru5_110_C,AGGCTGAA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_57 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.1.69,Feist_11661_P42,F9,iTru7_302_05,TGCACCAA,iTru5_111_C,AGGTTCCT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_69 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.3.23,Feist_11661_P42,H9,iTru7_302_06,ATCACACG,iTru5_112_C,AGTGACCT,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.3.50,Feist_11661_P42,J9,iTru7_302_07,ATGCCTGT,iTru5_101_D,GGTTAGCT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_50 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.3.61,Feist_11661_P42,L9,iTru7_302_08,ACCTGACT,iTru5_102_D,GTAGCGTA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_61 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.5.22,Feist_11661_P42,N9,iTru7_302_09,GCTTCGAA,iTru5_103_D,GGACTACT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_22 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.5.36,Feist_11661_P42,P9,iTru7_302_10,CGGTCATA,iTru5_104_D,TGGTTCGA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_36 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.5.46,Feist_11661_P42,B11,iTru7_302_11,GTTAGACG,iTru5_105_D,GGAGTCTT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_46 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.7.23,Feist_11661_P42,D11,iTru7_302_12,TCTAACGC,iTru5_106_D,GGATTCAC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.7.41,Feist_11661_P42,F11,iTru7_303_01,ATAGCGGT,iTru5_107_D,TCGGATTC,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_41 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.7.51,Feist_11661_P42,H11,iTru7_303_02,GGACCTAT,iTru5_108_D,GAGCAATC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_51 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.17.25,Feist_11661_P42,J11,iTru7_303_03,CGATGCTT,iTru5_109_D,GATCCACT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.17.58,Feist_11661_P42,L11,iTru7_303_04,GAGCTTGT,iTru5_110_D,GAAGACTG,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_58 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.17.64,Feist_11661_P42,N11,iTru7_303_05,GTGAAGTG,iTru5_111_D,GCCACTTA,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_64 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.19.25,Feist_11661_P42,P11,iTru7_303_06,GAGTGGTT,iTru5_112_D,TCCATTGC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.19.55,Feist_11661_P42,B13,iTru7_303_07,TGATACGC,iTru5_101_E,AACAGTCC,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_55 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.19.63,Feist_11661_P42,D13,iTru7_303_08,AGCAGATG,iTru5_102_E,AAGCTCAC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_63 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.21.23,Feist_11661_P42,F13,iTru7_303_09,CCAGTGTT,iTru5_103_E,AAGTCCTC,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.21.46,Feist_11661_P42,H13,iTru7_303_10,ATTCCTCC,iTru5_104_E,ACACTCTG,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_46 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.21.51,Feist_11661_P42,J13,iTru7_303_11,CTAACTCG,iTru5_105_E,ACGGTACA,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_51 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.29.25,Feist_11661_P42,L13,iTru7_303_12,GATGAGAC,iTru5_106_E,ACTCCTAC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.29.49,Feist_11661_P42,N13,iTru7_304_01,TCAGGCTT,iTru5_107_E,AGAGGATG,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_49 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.29.57,Feist_11661_P42,P13,iTru7_304_02,GTTCTCGT,iTru5_108_E,AGCCGTAA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_57 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.31.24,Feist_11661_P42,B15,iTru7_304_03,ATCGATCG,iTru5_109_E,AGCTTCAG,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_24 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.31.42,Feist_11661_P42,D15,iTru7_304_04,CCTCAGTT,iTru5_110_E,AGGTAGGA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_42 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.31.62,Feist_11661_P42,F15,iTru7_304_05,ACTGCTAG,iTru5_111_E,AGTACACG,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_62 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.33.21,Feist_11661_P42,H15,iTru7_304_06,TCCGTGAA,iTru5_112_E,AGTGCATC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_21 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.33.41,Feist_11661_P42,J15,iTru7_304_07,GGATTCGT,iTru5_101_F,TTGGACTG,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_41 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.33.50,Feist_11661_P42,L15,iTru7_304_08,GGTCAGAT,iTru5_102_F,GTCGATTG,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_50 +1,JM-Metabolic__GN02514,JM-Metabolic.GN02514,Feist_11661_P42,N15,iTru7_304_09,TCGTGGAT,iTru5_103_F,GGCATTCT,Feist_11661,pool1,JM-Metabolic__GN02514 +1,JM-Metabolic__GN02529,JM-Metabolic.GN02529,Feist_11661_P42_diluted,P15,iTru7_304_10,CGTGTGTA,iTru5_104_F,TGGTATCC,Feist_11661,pool2,JM-Metabolic__GN02529 +1,JM-Metabolic__GN02531,JM-Metabolic.GN02531,Feist_11661_P42_diluted,B17,iTru7_304_11,GTGTCTGA,iTru5_105_F,GGCAAGTT,Feist_11661,pool1,JM-Metabolic__GN02531 +1,JM-Metabolic__GN02567,JM-Metabolic.GN02567,Feist_11661_P42,D17,iTru7_304_12,GAATCGTG,iTru5_106_F,GTCTGAGT,Feist_11661,pool2,JM-Metabolic__GN02567 +1,JM-Metabolic__GN02590,JM-Metabolic.GN02590,Feist_11661_P42_diluted,F17,iTru7_305_01,GCGATAGT,iTru5_107_F,TCTACGCA,Feist_11661,pool1,JM-Metabolic__GN02590 +1,JM-Metabolic__GN02657,JM-Metabolic.GN02657,Feist_11661_P42_diluted,H17,iTru7_305_02,GGCTATTG,iTru5_108_F,GAGGCATT,Feist_11661,pool2,JM-Metabolic__GN02657 +1,JM-Metabolic__GN02748,JM-Metabolic.GN02748,Feist_11661_P42,J17,iTru7_305_03,AGTTACGG,iTru5_109_F,GCTAAGGA,Feist_11661,pool1,JM-Metabolic__GN02748 +1,JM-Metabolic__GN02766,JM-Metabolic.GN02766,Feist_11661_P42_diluted,L17,iTru7_305_04,CGTACGAA,iTru5_110_F,GCCAGAAT,Feist_11661,pool2,JM-Metabolic__GN02766 +1,JM-Metabolic__GN02769,JM-Metabolic.GN02769,Feist_11661_P42_diluted,N17,iTru7_305_05,ACCACGAT,iTru5_111_F,TAAGTGGC,Feist_11661,pool1,JM-Metabolic__GN02769 +1,JM-Metabolic__GN02787,JM-Metabolic.GN02787,Feist_11661_P42_diluted,P17,iTru7_305_06,GATTACCG,iTru5_112_F,GCAATGAG,Feist_11661,pool2,JM-Metabolic__GN02787 +1,JM-Metabolic__GN03132,JM-Metabolic.GN03132,Feist_11661_P42,B19,iTru7_305_07,GAGATACG,iTru5_101_G,AACTGAGG,Feist_11661,pool1,JM-Metabolic__GN03132 +1,JM-Metabolic__GN03218,JM-Metabolic.GN03218,Feist_11661_P42_diluted,D19,iTru7_305_08,CGACGTTA,iTru5_102_G,AAGGAAGG,Feist_11661,pool2,JM-Metabolic__GN03218 +1,JM-Metabolic__GN03252,JM-Metabolic.GN03252,Feist_11661_P42_diluted,F19,iTru7_305_09,GAGATGTC,iTru5_103_G,AATGGTCG,Feist_11661,pool1,JM-Metabolic__GN03252 +1,JM-Metabolic__GN03409,JM-Metabolic.GN03409,Feist_11661_P42_diluted,H19,iTru7_305_10,GATTGGAG,iTru5_104_G,ACAGCAAG,Feist_11661,pool2,JM-Metabolic__GN03409 +1,JM-Metabolic__GN04014,JM-Metabolic.GN04014,Feist_11661_P42_diluted,J19,iTru7_305_11,GCAATTCG,iTru5_105_G,ACGTATGG,Feist_11661,pool1,JM-Metabolic__GN04014 +1,JM-Metabolic__GN04094,JM-Metabolic.GN04094,Feist_11661_P42_diluted,L19,iTru7_305_12,CGTCAATG,iTru5_106_G,ACTGCACT,Feist_11661,pool2,JM-Metabolic__GN04094 +1,JM-Metabolic__GN04255,JM-Metabolic.GN04255,Feist_11661_P42_diluted,N19,iTru7_401_01,ATGCACGA,iTru5_107_G,AGAGTCCA,Feist_11661,pool1,JM-Metabolic__GN04255 +1,JM-Metabolic__GN04306,JM-Metabolic.GN04306,Feist_11661_P42_diluted,P19,iTru7_401_02,ATCGCCAT,iTru5_108_G,AGCCTATC,Feist_11661,pool2,JM-Metabolic__GN04306 +1,JM-Metabolic__GN04428,JM-Metabolic.GN04428,Feist_11661_P42_diluted,B21,iTru7_401_03,TCTCGCAA,iTru5_109_G,AGGAACAC,Feist_11661,pool1,JM-Metabolic__GN04428 +1,JM-Metabolic__GN04488,JM-Metabolic.GN04488,Feist_11661_P42_diluted,D21,iTru7_401_04,ACGACAGA,iTru5_110_G,AGGTCTGT,Feist_11661,pool2,JM-Metabolic__GN04488 +1,JM-Metabolic__GN04540,JM-Metabolic.GN04540,Feist_11661_P42_diluted,F21,iTru7_401_05,TTACGGCT,iTru5_111_G,AGTATGCC,Feist_11661,pool1,JM-Metabolic__GN04540 +1,JM-Metabolic__GN04563,JM-Metabolic.GN04563,Feist_11661_P42_diluted,H21,iTru7_401_06,GAGGACTT,iTru5_112_G,AGTTCGCA,Feist_11661,pool2,JM-Metabolic__GN04563 +1,JM-Metabolic__GN04612,JM-Metabolic.GN04612,Feist_11661_P42_diluted,J21,iTru7_401_07,GGCATACT,iTru5_101_H,TGGAAGCA,Feist_11661,pool1,JM-Metabolic__GN04612 +1,JM-Metabolic__GN04665,JM-Metabolic.GN04665,Feist_11661_P42_diluted,L21,iTru7_401_08,CGTAGGTT,iTru5_102_H,GTCAGTCA,Feist_11661,pool2,JM-Metabolic__GN04665 +1,JM-Metabolic__GN04682,JM-Metabolic.GN04682,Feist_11661_P42_diluted,N21,iTru7_401_09,ATATGCGC,iTru5_103_H,GTAACCGA,Feist_11661,pool1,JM-Metabolic__GN04682 +1,JM-Metabolic__GN05002,JM-Metabolic.GN05002,Feist_11661_P42_diluted,P21,iTru7_401_10,GGATGTAG,iTru5_104_H,GTTATGGC,Feist_11661,pool2,JM-Metabolic__GN05002 +1,JM-Metabolic__GN05109,JM-Metabolic.GN05109,Feist_11661_P42_diluted,B23,iTru7_401_11,CCTGTCAT,iTru5_105_H,GTAAGCAC,Feist_11661,pool1,JM-Metabolic__GN05109 +1,JM-Metabolic__GN05128,JM-Metabolic.GN05128,Feist_11661_P42_diluted,D23,iTru7_401_12,TGCTCATG,iTru5_106_H,GGAATGTC,Feist_11661,pool2,JM-Metabolic__GN05128 +1,JM-Metabolic__GN05367,JM-Metabolic.GN05367,Feist_11661_P42_diluted,F23,iTru7_402_01,TGAAGACG,iTru5_107_H,GAGAAGGT,Feist_11661,pool1,JM-Metabolic__GN05367 +1,JM-Metabolic__GN05377,JM-Metabolic.GN05377,Feist_11661_P42_diluted,H23,iTru7_402_02,GTTACGCA,iTru5_108_H,GAGTAGAG,Feist_11661,pool2,JM-Metabolic__GN05377 +1,7A,7A,Gerwick_tubes,J23,iTru7_402_03,ACTCAGAC,iTru5_109_H,GCATTGGT,Gerwick_6123,pool1,7A +1,8A,8A,Gerwick_tubes,L23,iTru7_402_04,GTCCACAT,iTru5_110_H,TCCAGCAA,Gerwick_6123,pool2,8A +1,BLANK_42_12G,BLANK.42.12G,Feist_11661_P42,N23,iTru7_402_05,CGCTAGTA,iTru5_111_H,GAATCCGT,Feist_11661,pool1,BLANK.42.12G +1,BLANK_42_12H,BLANK.42.12H,Feist_11661_P42,P23,iTru7_402_06,GAATCCGA,iTru5_112_H,TACATCGG,Feist_11661,pool2,BLANK.42.12H +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0326,Feist_11661_P43,B2,iTru7_402_07,GAGACGAT,iTru5_113_A,ATAACGCC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0326 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0327,Feist_11661_P43,D2,iTru7_402_08,TAAGTGGC,iTru5_114_A,ATGACAGG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0327 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0328,Feist_11661_P43,F2,iTru7_402_09,ACTGAGGT,iTru5_115_A,CAACACAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0328 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0329,Feist_11661_P43,H2,iTru7_402_10,TGTACCGT,iTru5_116_A,CACCAGTT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0329 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0330,Feist_11661_P43,J2,iTru7_402_11,AGCAAGCA,iTru5_117_A,CAGAGTGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0330 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0352,Feist_11661_P43,L2,iTru7_402_12,TCTCGTGT,iTru5_118_A,CCGATGTA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0352 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0353,Feist_11661_P43,N2,iTru7_115_01,CAAGGTCT,iTru5_119_A,CCTTCCAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0353 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0354,Feist_11661_P43,P2,iTru7_115_02,TAGACGTG,iTru5_120_A,CGGTAATC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0354 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0355,Feist_11661_P43,B4,iTru7_115_03,TGAGCTAG,iTru5_121_A,CTAGGTTG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0355 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0356,Feist_11661_P43,D4,iTru7_115_04,CTGACACA,iTru5_122_A,CTCGGTAA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0356 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0357,Feist_11661_P43,F4,iTru7_115_05,ACGGTCTT,iTru5_123_A,CTGTGGTA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0357 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0364,Feist_11661_P43,H4,iTru7_115_06,GCTGTTGT,iTru5_124_A,GTACGATC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0364 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0366,Feist_11661_P43,J4,iTru7_115_07,CACTAGCT,iTru5_113_B,TCTGTCGT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0366 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0367,Feist_11661_P43,L4,iTru7_115_08,TGGTACAG,iTru5_114_B,GAATGGCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0367 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0368,Feist_11661_P43,N4,iTru7_115_09,AGCACTTC,iTru5_115_B,GTGTGTTC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0368 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0369,Feist_11661_P43,P4,iTru7_115_10,GCATACAG,iTru5_116_B,GGTTGAAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0369 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0370,Feist_11661_P43,B6,iTru7_115_11,CTTAGGAC,iTru5_117_B,GGCTCAAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0370 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0371,Feist_11661_P43,D6,iTru7_211_01,GCTTCTTG,iTru5_118_B,TTCGCCAT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0371 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0372,Feist_11661_P43,F6,iTru7_101_01,ACGTTACC,iTru5_119_B,GTCCTTGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0372 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0373,Feist_11661_P43,H6,iTru7_101_02,CTGTGTTG,iTru5_120_B,TAACGTCG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0373 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0374,Feist_11661_P43,J6,iTru7_101_03,TGAGGTGT,iTru5_121_B,GAGACCAA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0374 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0375,Feist_11661_P43,L6,iTru7_101_04,GATCCATG,iTru5_122_B,GATCAAGG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0375 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0376,Feist_11661_P43,N6,iTru7_101_05,GCCTATCA,iTru5_123_B,GCAACCAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0376 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0377,Feist_11661_P43,P6,iTru7_101_06,AACAACCG,iTru5_124_B,AAGGAGAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0377 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0378,Feist_11661_P43,B8,iTru7_101_07,ACTCGTTG,iTru5_113_C,ATCGGAGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0378 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0380,Feist_11661_P43,D8,iTru7_101_08,CCTATGGT,iTru5_114_C,ATGCGCTT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0380 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0381,Feist_11661_P43,F8,iTru7_101_09,TGTACACC,iTru5_115_C,CAACCGTA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0381 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0382,Feist_11661_P43,H8,iTru7_101_10,GTATGCTG,iTru5_116_C,CACTTCAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0382 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0383,Feist_11661_P43,J8,iTru7_101_11,TGATGTCC,iTru5_117_C,CAGCTAGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0383 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0384,Feist_11661_P43,L8,iTru7_101_12,GTCCTTCT,iTru5_118_C,CCGTTATG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0384 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0385,Feist_11661_P43,N8,iTru7_102_01,ATAAGGCG,iTru5_119_C,CGAACAAC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0385 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0386,Feist_11661_P43,P8,iTru7_102_02,CTTACCTG,iTru5_120_C,CGTAGATG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0386 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0387,Feist_11661_P43,B10,iTru7_102_03,CGTTGCAA,iTru5_121_C,CTATGCCT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0387 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0388,Feist_11661_P43,D10,iTru7_102_04,GATTCAGC,iTru5_122_C,CTGATGAG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0388 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0389,Feist_11661_P43,F10,iTru7_102_05,TCACGTTC,iTru5_123_C,CTTCCTTC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0389 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0390,Feist_11661_P43,H10,iTru7_102_06,TGTGCGTT,iTru5_124_C,GTCTCATC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0390 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0391,Feist_11661_P43,J10,iTru7_102_07,TAGTTGCG,iTru5_113_D,GCGCATAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0391 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0392,Feist_11661_P43,L10,iTru7_102_08,AAGAGCCA,iTru5_114_D,GAAGATCC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0392 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0393,Feist_11661_P43,N10,iTru7_102_09,ACAGCTCA,iTru5_115_D,GTTGGCAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0393 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0394,Feist_11661_P43,P10,iTru7_102_10,GTTAAGGC,iTru5_116_D,GTGAATGG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0394 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0395,Feist_11661_P43,B12,iTru7_102_11,AAGCCACA,iTru5_117_D,GTATCGAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0395 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0396,Feist_11661_P43,D12,iTru7_102_12,ACACGGTT,iTru5_118_D,TGCAAGAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0396 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0397,Feist_11661_P43,F12,iTru7_103_01,CAGCGATT,iTru5_119_D,GAGTGTGT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0397 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0398,Feist_11661_P43,H12,iTru7_103_02,TAGTGACC,iTru5_120_D,TAAGCGCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0398 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0399,Feist_11661_P43,J12,iTru7_103_03,CGAGACTA,iTru5_121_D,TAGCAGGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0399 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0400,Feist_11661_P43,L12,iTru7_103_04,GACATGGT,iTru5_122_D,GACTACGA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0400 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0401,Feist_11661_P43,N12,iTru7_103_05,GCATGTCT,iTru5_123_D,GACGTCAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0401 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0402,Feist_11661_P43,P12,iTru7_103_06,ACTCCATC,iTru5_124_D,AAGAGGCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0402 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0403,Feist_11661_P43,B14,iTru7_103_07,TGTGACTG,iTru5_113_E,ATCGTCTC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0403 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0404,Feist_11661_P43,D14,iTru7_103_08,CGAAGAAC,iTru5_114_E,ATGGCGAT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0404 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0405,Feist_11661_P43,F14,iTru7_103_09,GGTGTCTT,iTru5_115_E,CAAGAAGC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0405 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0406,Feist_11661_P43,H14,iTru7_103_10,AAGAAGGC,iTru5_116_E,CAGAACTG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0406 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0407,Feist_11661_P43,J14,iTru7_103_11,AGGTTCGA,iTru5_117_E,CAGGTAAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0407 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0408,Feist_11661_P43,L14,iTru7_103_12,CATGTTCC,iTru5_118_E,CCTACCTA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0408 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0409,Feist_11661_P43,N14,iTru7_104_01,GTGCCATA,iTru5_119_E,CGAAGTCA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0409 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0417,Feist_11661_P43,P14,iTru7_104_02,CCTTGTAG,iTru5_120_E,CGTCTTCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0417 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0418,Feist_11661_P43,B16,iTru7_104_03,GCTGGATT,iTru5_121_E,CTCAAGCT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0418 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0419,Feist_11661_P43,D16,iTru7_104_04,TAACGAGG,iTru5_122_E,CTGCCATA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0419 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0420,Feist_11661_P43,F16,iTru7_104_05,ATGGTTGC,iTru5_123_E,CTTGCTAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0420 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0421,Feist_11661_P43,H16,iTru7_104_06,CCTATACC,iTru5_124_E,GTCTGCAA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0421 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0473,Feist_11661_P43,J16,iTru7_104_07,TTAGGTCG,iTru5_113_F,GCTACTCT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0473 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0474,Feist_11661_P43,L16,iTru7_104_08,GCAAGATC,iTru5_114_F,TACAGAGC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0474 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0483,Feist_11661_P43,N16,iTru7_104_09,AGAGCCTT,iTru5_115_F,GGTCGTAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0483 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0484,Feist_11661_P43,P16,iTru7_104_10,GCAATGGA,iTru5_116_F,GTCGTTAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0484 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0485,Feist_11661_P43,B18,iTru7_104_11,CTGGAGTA,iTru5_117_F,TTCACGGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0485 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0486,Feist_11661_P43,D18,iTru7_104_12,GAACATCG,iTru5_118_F,TGCTTGCT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0486 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0516,Feist_11661_P43,F18,iTru7_105_01,GCACAACT,iTru5_119_F,TCTTACGG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0516 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0517,Feist_11661_P43,H18,iTru7_105_02,TTCTCTCG,iTru5_120_F,TCCTCATG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0517 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0518,Feist_11661_P43,J18,iTru7_105_03,AACGGTCA,iTru5_121_F,GATGTCGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0518 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0519,Feist_11661_P43,L18,iTru7_105_04,ACAGACCT,iTru5_122_F,GAAGTGCT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0519 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0520,Feist_11661_P43,N18,iTru7_105_05,TCTCTTCC,iTru5_123_F,TCACTCGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0520 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0521,Feist_11661_P43,P18,iTru7_105_06,AGTGTTGG,iTru5_124_F,ACGCAGTA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0521 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0522,Feist_11661_P43,B20,iTru7_105_07,TGGCATGT,iTru5_113_G,ATCTCCTG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0522 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0523,Feist_11661_P43,D20,iTru7_105_08,AGAAGCGT,iTru5_114_G,ATGTGGAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0523 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0524,Feist_11661_P43,F20,iTru7_105_09,AGCGGAAT,iTru5_115_G,CAAGCCAA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0524 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0525,Feist_11661_P43,H20,iTru7_105_10,TAACCGGT,iTru5_116_G,CAGACGTT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0525 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624,JM-MEC.Staphylococcus.aureusstrain.BERTI-R08624,Feist_11661_P43,J20,iTru7_105_11,CATGGAAC,iTru5_117_G,CATACTCG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R08624 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704,JM-MEC.Staphylococcus.aureusstrain.BERTI-R08704,Feist_11661_P43,L20,iTru7_105_12,ATGGTCCA,iTru5_118_G,CCTGTCAA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R08704 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727,JM-MEC.Staphylococcus.aureusstrain.BERTI-R10727,Feist_11661_P43,N20,iTru7_106_01,CTTCTGAG,iTru5_119_G,CGAGTTAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R10727 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11044,Feist_11661_P43,P20,iTru7_106_02,AACCGAAG,iTru5_120_G,CTAACCTG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R11044 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11078,Feist_11661_P43,B22,iTru7_106_03,TTCGTACC,iTru5_121_G,CTCCTAGT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R11078 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11101,Feist_11661_P43,D22,iTru7_106_04,CTGTTAGG,iTru5_122_G,CTGTACCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R11101 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11102,Feist_11661_P43,F22,iTru7_106_05,CACAAGTC,iTru5_123_G,GCTACAAC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R11102 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11103,Feist_11661_P43,H22,iTru7_106_06,TCTTGACG,iTru5_124_G,GTTCTTCG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R11103 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11135,Feist_11661_P43,J22,iTru7_106_07,CGTCTTGT,iTru5_113_H,GAGAGTAC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R11135 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11153,Feist_11661_P43,L22,iTru7_106_08,CGTGATCA,iTru5_114_H,GACACAGT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R11153 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11154,Feist_11661_P43,N22,iTru7_106_09,CCAAGTTG,iTru5_115_H,TTGCTTGG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R11154 +1,JM-Metabolic__GN02424,JM-Metabolic.GN02424,Feist_11661_P43,P22,iTru7_106_10,GTACCTTG,iTru5_116_H,GTAGTACC,Feist_11661,pool2,JM-Metabolic__GN02424 +1,JM-Metabolic__GN02446,JM-Metabolic.GN02446,Feist_11661_P43,B24,iTru7_106_11,GACTATGC,iTru5_117_H,TTCGGCTA,Feist_11661,pool1,JM-Metabolic__GN02446 +1,JM-Metabolic__GN02449,JM-Metabolic.GN02449,Feist_11661_P43,D24,iTru7_106_12,TGGATCAC,iTru5_118_H,TGCACTTG,Feist_11661,pool2,JM-Metabolic__GN02449 +1,JM-Metabolic__GN02487,JM-Metabolic.GN02487,Feist_11661_P43_diluted,F24,iTru7_107_01,CTCTGGTT,iTru5_119_H,TAGAACGC,Feist_11661,pool1,JM-Metabolic__GN02487 +1,JM-Metabolic__GN02501,JM-Metabolic.GN02501,Feist_11661_P43,H24,iTru7_107_02,GTTCATGG,iTru5_120_H,GATTGTCC,Feist_11661,pool2,JM-Metabolic__GN02501 +1,ISB,ISB,Gerwick_tubes,J24,iTru7_107_03,GCTGTAAG,iTru5_121_H,GATGCTAC,Gerwick_6123,pool1,ISB +1,GFR,GFR,Gerwick_tubes,L24,iTru7_107_04,GTCGAAGA,iTru5_122_H,GAACGGTT,Gerwick_6123,pool2,GFR +1,BLANK_43_12G,BLANK.43.12G,Feist_11661_P43,N24,iTru7_107_05,GAGCTCAA,iTru5_123_H,CTCTTGTC,Feist_11661,pool1,BLANK.43.12G +1,BLANK_43_12H,BLANK.43.12H,Feist_11661_P43,P24,iTru7_107_06,TGAACCTG,iTru5_124_H,AACGCCTT,Feist_11661,pool2,BLANK.43.12H +1,RMA_KHP_rpoS_Mage_Q97D,RMA.KHP.rpoS.Mage.Q97D,,,12,CTTGTAAT,U1,TATAGCGT,Feist_11661,pool1,RMA_KHP_rpoS Mage Q97D +1,RMA_KHP_rpoS_Mage_Q97L,RMA.KHP.rpoS.Mage.Q97L,,,13,AGTCAAAT,U1,TATAGCGT,Feist_11661,pool2,RMA_KHP_rpoS Mage Q97L +1,RMA_KHP_rpoS_Mage_Q97N,RMA.KHP.rpoS.Mage.Q97N,,,14,AGTTCCAT,U1,TATAGCGT,Feist_11661,pool1,RMA_KHP_rpoS Mage Q97N +1,RMA_KHP_rpoS_Mage_Q97E,RMA.KHP.rpoS.Mage.Q97E,,,15,ATGTCAAT,U1,TATAGCGT,Feist_11661,pool2,RMA_KHP_rpoS Mage Q97E +1,JBI_KHP_HGL_021,JBI.KHP.HGL.021,,,1,ATCACGAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_021 +1,JBI_KHP_HGL_022,JBI.KHP.HGL.022,,,2,CGATGTAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_022 +1,JBI_KHP_HGL_023,JBI.KHP.HGL.023,,,3,TTAGGCAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_023 +1,JBI_KHP_HGL_024,JBI.KHP.HGL.024,,,4,TGACCAAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_024 +1,JBI_KHP_HGL_025,JBI.KHP.HGL.025,,,5,ACAGTGAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_025 +1,JBI_KHP_HGL_026,JBI.KHP.HGL.026,,,6,GCCAATAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_026 +1,JBI_KHP_HGL_027,JBI.KHP.HGL.027,,,7,CAGATCAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_027 +1,JBI_KHP_HGL_028_Amitesh_soxR,JBI.KHP.HGL.028.Amitesh.soxR,,,8,ACTTGAAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_028_Amitesh_soxR +1,JBI_KHP_HGL_029_Amitesh_oxyR,JBI.KHP.HGL.029.Amitesh.oxyR,,,9,GATCAGAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_029_Amitesh_oxyR +1,JBI_KHP_HGL_030_Amitesh_soxR_oxyR,JBI.KHP.HGL.030.Amitesh.soxR.oxyR,,,10,TAGCTTAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_030_Amitesh_soxR_oxyR +1,JBI_KHP_HGL_031_Amitesh_rpoS,JBI.KHP.HGL.031.Amitesh.rpoS,,,11,GGCTACAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_031_Amitesh_rpoS +1,BLANK1_1A,BLANK1.1A,NYU_BMS_Melanoma_13059_P1,A1,iTru7_107_09,GCCTTGTT,iTru5_01_A,ACCGACAA,NYU_BMS_Melanoma_13059,pool2,BLANK1.1A +1,BLANK1_1B,BLANK1.1B,NYU_BMS_Melanoma_13059_P1,C1,iTru7_107_10,AACTTGCC,iTru5_02_A,CTTCGCAA,NYU_BMS_Melanoma_13059,pool1,BLANK1.1B +1,BLANK1_1C,BLANK1.1C,NYU_BMS_Melanoma_13059_P1,E1,iTru7_107_11,CAATGTGG,iTru5_03_A,AACACCAC,NYU_BMS_Melanoma_13059,pool2,BLANK1.1C +1,BLANK1_1D,BLANK1.1D,NYU_BMS_Melanoma_13059_P1,G1,iTru7_107_12,AAGGCTGA,iTru5_04_A,CGTATCTC,NYU_BMS_Melanoma_13059,pool1,BLANK1.1D +1,BLANK1_1E,BLANK1.1E,NYU_BMS_Melanoma_13059_P1,I1,iTru7_108_01,TTACCGAG,iTru5_05_A,GGTACGAA,NYU_BMS_Melanoma_13059,pool2,BLANK1.1E +1,BLANK1_1F,BLANK1.1F,NYU_BMS_Melanoma_13059_P1,K1,iTru7_108_02,GTCCTAAG,iTru5_06_A,CGATCGAT,NYU_BMS_Melanoma_13059,pool1,BLANK1.1F +1,BLANK1_1G,BLANK1.1G,NYU_BMS_Melanoma_13059_P1,M1,iTru7_108_03,GAAGGTTC,iTru5_07_A,AAGACACC,NYU_BMS_Melanoma_13059,pool2,BLANK1.1G +1,BLANK1_1H,BLANK1.1H,NYU_BMS_Melanoma_13059_P1,O1,iTru7_108_04,GAAGAGGT,iTru5_08_A,CATCTGCT,NYU_BMS_Melanoma_13059,pool1,BLANK1.1H +1,AP581451B02,AP581451B02,NYU_BMS_Melanoma_13059_P1,A3,iTru7_108_05,TCTGAGAG,iTru5_09_A,CTCTCAGA,NYU_BMS_Melanoma_13059,pool2,AP581451B02 +1,EP256645B01,EP256645B01,NYU_BMS_Melanoma_13059_P1,C3,iTru7_108_06,ACCGCATA,iTru5_10_A,TCGTCTGA,NYU_BMS_Melanoma_13059,pool1,EP256645B01 +1,EP112567B02,EP112567B02,NYU_BMS_Melanoma_13059_P1,E3,iTru7_108_07,GAAGTACC,iTru5_11_A,CAATAGCC,NYU_BMS_Melanoma_13059,pool2,EP112567B02 +1,EP337425B01,EP337425B01,NYU_BMS_Melanoma_13059_P1,G3,iTru7_108_08,CAGGTATC,iTru5_12_A,CATTCGTC,NYU_BMS_Melanoma_13059,pool1,EP337425B01 +1,LP127890A01,LP127890A01,NYU_BMS_Melanoma_13059_P1,I3,iTru7_108_09,TCTCTAGG,iTru5_01_B,AGTGGCAA,NYU_BMS_Melanoma_13059,pool2,LP127890A01 +1,EP159692B04,EP159692B04,NYU_BMS_Melanoma_13059_P1,K3,iTru7_108_10,AAGCACTG,iTru5_02_B,GTGGTATG,NYU_BMS_Melanoma_13059,pool1,EP159692B04 +1,EP987683A01,EP987683A01,NYU_BMS_Melanoma_13059_P1,M3,iTru7_108_11,CCAAGCAA,iTru5_03_B,TGAGCTGT,NYU_BMS_Melanoma_13059,pool2,EP987683A01 +1,AP959450A03,AP959450A03,NYU_BMS_Melanoma_13059_P1,O3,iTru7_108_12,TGTTCGAG,iTru5_04_B,CGTCAAGA,NYU_BMS_Melanoma_13059,pool1,AP959450A03 +1,SP464350A04,SP464350A04,NYU_BMS_Melanoma_13059_P1,A5,iTru7_109_01,CTCGTCTT,iTru5_05_B,AAGCATCG,NYU_BMS_Melanoma_13059,pool2,SP464350A04 +1,C9,C9,NYU_BMS_Melanoma_13059_P1,C5,iTru7_109_02,CGAACTGT,iTru5_06_B,TACTCCAG,NYU_BMS_Melanoma_13059,pool1,C9 +1,ep256643b01,ep256643b01,NYU_BMS_Melanoma_13059_P1,E5,iTru7_109_03,CATTCGGT,iTru5_07_B,GATACCTG,NYU_BMS_Melanoma_13059,pool2,ep256643b01 +1,EP121011B01,EP121011B01,NYU_BMS_Melanoma_13059_P1,G5,iTru7_109_04,TCGGTTAC,iTru5_08_B,ACCTCTTC,NYU_BMS_Melanoma_13059,pool1,EP121011B01 +1,AP616837B04,AP616837B04,NYU_BMS_Melanoma_13059_P1,I5,iTru7_109_05,AAGTCGAG,iTru5_09_B,ACGGACTT,NYU_BMS_Melanoma_13059,pool2,AP616837B04 +1,SP506933A04,SP506933A04,NYU_BMS_Melanoma_13059_P1,K5,iTru7_109_06,TATCGGTC,iTru5_10_B,CATGTGTG,NYU_BMS_Melanoma_13059,pool1,SP506933A04 +1,EP159695B01,EP159695B01,NYU_BMS_Melanoma_13059_P1,M5,iTru7_109_07,TATTCGCC,iTru5_11_B,TGCCTCAA,NYU_BMS_Melanoma_13059,pool2,EP159695B01 +1,EP256644B01,EP256644B01,NYU_BMS_Melanoma_13059_P1,O5,iTru7_109_08,GTATTGGC,iTru5_12_B,ATCTGACC,NYU_BMS_Melanoma_13059,pool1,EP256644B01 +1,SP511289A02,SP511289A02,NYU_BMS_Melanoma_13059_P1,A7,iTru7_109_09,AGTCGCTT,iTru5_01_C,CACAGACT,NYU_BMS_Melanoma_13059,pool2,SP511289A02 +1,EP305735B04,EP305735B04,NYU_BMS_Melanoma_13059_P1,C7,iTru7_109_10,TGGCACTA,iTru5_02_C,CACTGTAG,NYU_BMS_Melanoma_13059,pool1,EP305735B04 +1,SP415030A01,SP415030A01,NYU_BMS_Melanoma_13059_P1,E7,iTru7_109_11,GGTTGTCA,iTru5_03_C,CACAGGAA,NYU_BMS_Melanoma_13059,pool2,SP415030A01 +1,AP549681B02,AP549681B02,NYU_BMS_Melanoma_13059_P1,G7,iTru7_109_12,AACCTCCT,iTru5_04_C,CCATGAAC,NYU_BMS_Melanoma_13059,pool1,AP549681B02 +1,AP549678B01,AP549678B01,NYU_BMS_Melanoma_13059_P1,I7,iTru7_110_01,ATGACCAG,iTru5_05_C,GCCAATAC,NYU_BMS_Melanoma_13059,pool2,AP549678B01 +1,EP260544B04,EP260544B04,NYU_BMS_Melanoma_13059_P1,K7,iTru7_110_02,AACCGTTC,iTru5_06_C,AGCTACCA,NYU_BMS_Melanoma_13059,pool1,EP260544B04 +1,EP202452B01,EP202452B01,NYU_BMS_Melanoma_13059_P1,M7,iTru7_110_03,TCCAATCG,iTru5_07_C,AACCGAAC,NYU_BMS_Melanoma_13059,pool2,EP202452B01 +1,EP282276B04,EP282276B04,NYU_BMS_Melanoma_13059_P1,O7,iTru7_110_04,CTGCACTT,iTru5_08_C,ATCGCAAC,NYU_BMS_Melanoma_13059,pool1,EP282276B04 +1,SP531696A04,SP531696A04,NYU_BMS_Melanoma_13059_P1,A9,iTru7_110_05,CGCTTAAC,iTru5_09_C,GTTGCTGT,NYU_BMS_Melanoma_13059,pool2,SP531696A04 +1,SP515443A04,SP515443A04,NYU_BMS_Melanoma_13059_P1,C9,iTru7_110_06,CACCACTA,iTru5_10_C,TCTAGTCC,NYU_BMS_Melanoma_13059,pool1,SP515443A04 +1,SP515763A04,SP515763A04,NYU_BMS_Melanoma_13059_P1,E9,iTru7_110_07,ACAGCAAC,iTru5_11_C,GACGAACT,NYU_BMS_Melanoma_13059,pool2,SP515763A04 +1,EP184255B04,EP184255B04,NYU_BMS_Melanoma_13059_P1,G9,iTru7_110_08,GGAAGGAT,iTru5_12_C,TTCGTACG,NYU_BMS_Melanoma_13059,pool1,EP184255B04 +1,SP503615A02,SP503615A02,NYU_BMS_Melanoma_13059_P1,I9,iTru7_110_09,GGCGTTAT,iTru5_01_D,CGACACTT,NYU_BMS_Melanoma_13059,pool2,SP503615A02 +1,EP260543B04,EP260543B04,NYU_BMS_Melanoma_13059_P1,K9,iTru7_110_10,CTGTTGAC,iTru5_02_D,AGACGCTA,NYU_BMS_Melanoma_13059,pool1,EP260543B04 +1,EP768748A04,EP768748A04,NYU_BMS_Melanoma_13059_P1,M9,iTru7_110_11,GTCATCGA,iTru5_03_D,TGACAACC,NYU_BMS_Melanoma_13059,pool2,EP768748A04 +1,AP309872B03,AP309872B03,NYU_BMS_Melanoma_13059_P1,O9,iTru7_110_12,TGACTTCG,iTru5_04_D,GGTACTTC,NYU_BMS_Melanoma_13059,pool1,AP309872B03 +1,AP568785B04,AP568785B04,NYU_BMS_Melanoma_13059_P1,A11,iTru7_111_01,CGATAGAG,iTru5_05_D,CTGTATGC,NYU_BMS_Melanoma_13059,pool2,AP568785B04 +1,EP721390A04,EP721390A04,NYU_BMS_Melanoma_13059_P1,C11,iTru7_111_02,TTCGTTGG,iTru5_06_D,TCGACAAG,NYU_BMS_Melanoma_13059,pool1,EP721390A04 +1,EP940013A01,EP940013A01,NYU_BMS_Melanoma_13059_P1,E11,iTru7_111_03,TGGAGAGT,iTru5_07_D,GCTGAATC,NYU_BMS_Melanoma_13059,pool2,EP940013A01 +1,EP291979B04,EP291979B04,NYU_BMS_Melanoma_13059_P1,G11,iTru7_111_04,TCAGACGA,iTru5_08_D,AGTTGTGC,NYU_BMS_Melanoma_13059,pool1,EP291979B04 +1,EP182065B04,EP182065B04,NYU_BMS_Melanoma_13059_P1,I11,iTru7_111_05,GACGAATG,iTru5_09_D,TGTCGACT,NYU_BMS_Melanoma_13059,pool2,EP182065B04 +1,EP128904B02,EP128904B02,NYU_BMS_Melanoma_13059_P1,K11,iTru7_111_06,CATGAGGA,iTru5_10_D,AAGGCTCT,NYU_BMS_Melanoma_13059,pool1,EP128904B02 +1,EP915769A04,EP915769A04,NYU_BMS_Melanoma_13059_P1,M11,iTru7_111_07,CGGTTGTT,iTru5_11_D,CCTAACAG,NYU_BMS_Melanoma_13059,pool2,EP915769A04 +1,SP464352A03,SP464352A03,NYU_BMS_Melanoma_13059_P1,O11,iTru7_111_08,TCCGTATG,iTru5_12_D,AAGACGAG,NYU_BMS_Melanoma_13059,pool1,SP464352A03 +1,SP365864A04,SP365864A04,NYU_BMS_Melanoma_13059_P1,A13,iTru7_111_09,TGTGGTAC,iTru5_01_E,GACTTGTG,NYU_BMS_Melanoma_13059,pool2,SP365864A04 +1,SP511294A04,SP511294A04,NYU_BMS_Melanoma_13059_P1,C13,iTru7_111_10,AGAACGAG,iTru5_02_E,CAACTCCA,NYU_BMS_Melanoma_13059,pool1,SP511294A04 +1,EP061002B01,EP061002B01,NYU_BMS_Melanoma_13059_P1,E13,iTru7_111_11,CTTCGTTC,iTru5_03_E,TGTTCCGT,NYU_BMS_Melanoma_13059,pool2,EP061002B01 +1,SP410793A01,SP410793A01,NYU_BMS_Melanoma_13059_P1,G13,iTru7_111_12,CCAATAGG,iTru5_04_E,ACCGCTAT,NYU_BMS_Melanoma_13059,pool1,SP410793A01 +1,SP232077A04,SP232077A04,NYU_BMS_Melanoma_13059_P1,I13,iTru7_112_01,ACCATCCA,iTru5_05_E,CTTAGGAC,NYU_BMS_Melanoma_13059,pool2,SP232077A04 +1,EP128910B01,EP128910B01,NYU_BMS_Melanoma_13059_P1,K13,iTru7_112_02,CACACATG,iTru5_06_E,TATGACCG,NYU_BMS_Melanoma_13059,pool1,EP128910B01 +1,AP531397B04,AP531397B04,NYU_BMS_Melanoma_13059_P1,M13,iTru7_112_03,CTTGTCGA,iTru5_07_E,AGCTAGTG,NYU_BMS_Melanoma_13059,pool2,AP531397B04 +1,EP043583B01,EP043583B01,NYU_BMS_Melanoma_13059_P1,O13,iTru7_112_04,AGTCTCAC,iTru5_08_E,GAACGAAG,NYU_BMS_Melanoma_13059,pool1,EP043583B01 +1,EP230245B01,EP230245B01,NYU_BMS_Melanoma_13059_P1,A15,iTru7_112_05,AGTTGGCT,iTru5_09_E,CGTCTAAC,NYU_BMS_Melanoma_13059,pool2,EP230245B01 +1,EP606652B04,EP606652B04,NYU_BMS_Melanoma_13059_P1,C15,iTru7_112_06,CCGGAATT,iTru5_10_E,AACCAGAG,NYU_BMS_Melanoma_13059,pool1,EP606652B04 +1,EP207041B01,EP207041B01,NYU_BMS_Melanoma_13059_P1,E15,iTru7_112_07,CAGTGAAG,iTru5_11_E,CGCCTTAT,NYU_BMS_Melanoma_13059,pool2,EP207041B01 +1,EP727972A04,EP727972A04,NYU_BMS_Melanoma_13059_P1,G15,iTru7_112_08,CCTACTGA,iTru5_12_E,CTCGTTCT,NYU_BMS_Melanoma_13059,pool1,EP727972A04 +1,EP291980B04,EP291980B04,NYU_BMS_Melanoma_13059_P1,I15,iTru7_112_09,TGTGAAGC,iTru5_01_F,GTGAGACT,NYU_BMS_Melanoma_13059,pool2,EP291980B04 +1,EP087938B02,EP087938B02,NYU_BMS_Melanoma_13059_P1,K15,iTru7_112_10,GTCTGATC,iTru5_02_F,AACACGCT,NYU_BMS_Melanoma_13059,pool1,EP087938B02 +1,SP471496A04,SP471496A04,NYU_BMS_Melanoma_13059_P1,M15,iTru7_112_11,TTCAGGAG,iTru5_03_F,CCTAGAGA,NYU_BMS_Melanoma_13059,pool2,SP471496A04 +1,SP573823A04,SP573823A04,NYU_BMS_Melanoma_13059_P1,O15,iTru7_112_12,ACGATGAC,iTru5_04_F,TTCCAGGT,NYU_BMS_Melanoma_13059,pool1,SP573823A04 +1,EP393718B01,EP393718B01,NYU_BMS_Melanoma_13059_P1,A17,iTru7_113_01,CGTTATGC,iTru5_05_F,TCAGCCTT,NYU_BMS_Melanoma_13059,pool2,EP393718B01 +1,SP612496A01,SP612496A01,NYU_BMS_Melanoma_13059_P1,C17,iTru7_113_02,GATACTGG,iTru5_06_F,AGCCAACT,NYU_BMS_Melanoma_13059,pool1,SP612496A01 +1,EP032410B02,EP032410B02,NYU_BMS_Melanoma_13059_P1,E17,iTru7_113_03,CTACTTGG,iTru5_07_F,CTAGCTCA,NYU_BMS_Melanoma_13059,pool2,EP032410B02 +1,EP073216B01,EP073216B01,NYU_BMS_Melanoma_13059_P1,G17,iTru7_113_04,CATACCAC,iTru5_08_F,GGAAGAGA,NYU_BMS_Melanoma_13059,pool1,EP073216B01 +1,EP410046B01,EP410046B01,NYU_BMS_Melanoma_13059_P1,I17,iTru7_113_05,ACATTGCG,iTru5_09_F,AACACTGG,NYU_BMS_Melanoma_13059,pool2,EP410046B01 +1,SP561451A04,SP561451A04,NYU_BMS_Melanoma_13059_P1,K17,iTru7_113_06,TGATCGGA,iTru5_10_F,ACTATCGC,NYU_BMS_Melanoma_13059,pool1,SP561451A04 +1,EP320438B01,EP320438B01,NYU_BMS_Melanoma_13059_P1,M17,iTru7_113_07,AAGTGTCG,iTru5_11_F,ACAACAGC,NYU_BMS_Melanoma_13059,pool2,EP320438B01 +1,SP612495A04,SP612495A04,NYU_BMS_Melanoma_13059_P1,O17,iTru7_113_08,GAACGCTT,iTru5_12_F,TGTGGCTT,NYU_BMS_Melanoma_13059,pool1,SP612495A04 +1,EP446604B03,EP446604B03,NYU_BMS_Melanoma_13059_P1,A19,iTru7_113_09,TCAAGGAC,iTru5_01_G,GTTCCATG,NYU_BMS_Melanoma_13059,pool2,EP446604B03 +1,EP446602B01,EP446602B01,NYU_BMS_Melanoma_13059_P1,C19,iTru7_113_10,TCAACTGG,iTru5_02_G,TGGATGGT,NYU_BMS_Melanoma_13059,pool1,EP446602B01 +1,EP182243B02,EP182243B02,NYU_BMS_Melanoma_13059_P1,E19,iTru7_113_11,GGTTGATG,iTru5_03_G,GCATAACG,NYU_BMS_Melanoma_13059,pool2,EP182243B02 +1,EP333541B04,EP333541B04,NYU_BMS_Melanoma_13059_P1,G19,iTru7_113_12,AAGGACAC,iTru5_04_G,TCGAACCT,NYU_BMS_Melanoma_13059,pool1,EP333541B04 +1,EP238034B01,EP238034B01,NYU_BMS_Melanoma_13059_P1,I19,iTru7_114_01,TTGATCCG,iTru5_05_G,ACATGCCA,NYU_BMS_Melanoma_13059,pool2,EP238034B01 +1,AP298002B02,AP298002B02,NYU_BMS_Melanoma_13059_P1,K19,iTru7_114_02,GGTGATTC,iTru5_06_G,GATCTTGC,NYU_BMS_Melanoma_13059,pool1,AP298002B02 +1,EP455759B04,EP455759B04,NYU_BMS_Melanoma_13059_P1,M19,iTru7_114_03,GATTGCTC,iTru5_07_G,GTTAAGCG,NYU_BMS_Melanoma_13059,pool2,EP455759B04 +1,EP207042B04,EP207042B04,NYU_BMS_Melanoma_13059_P1,O19,iTru7_114_04,ACCTGGAA,iTru5_08_G,GTCATCGT,NYU_BMS_Melanoma_13059,pool1,EP207042B04 +1,LP128479A01,LP128479A01,NYU_BMS_Melanoma_13059_P1,A21,iTru7_114_05,CATCTACG,iTru5_09_G,TCAGACAC,NYU_BMS_Melanoma_13059,pool2,LP128479A01 +1,LP128476A01,LP128476A01,NYU_BMS_Melanoma_13059_P1,C21,iTru7_114_06,CCGTATCT,iTru5_10_G,GTCCTAAG,NYU_BMS_Melanoma_13059,pool1,LP128476A01 +1,EP316863B03,EP316863B03,NYU_BMS_Melanoma_13059_P1,E21,iTru7_114_07,CGGAATAC,iTru5_11_G,AGACCTTG,NYU_BMS_Melanoma_13059,pool2,EP316863B03 +1,C20,C20,NYU_BMS_Melanoma_13059_P1,G21,iTru7_114_08,CTCCTAGA,iTru5_12_G,AGACATGC,NYU_BMS_Melanoma_13059,pool1,C20 +1,lp127896a01,lp127896a01,NYU_BMS_Melanoma_13059_P1,I21,iTru7_114_09,TGGTAGCT,iTru5_01_H,TAGCTGAG,NYU_BMS_Melanoma_13059,pool2,lp127896a01 +1,SP491907A02,SP491907A02,NYU_BMS_Melanoma_13059_P1,K21,iTru7_114_10,TCGAAGGT,iTru5_02_H,TTCGAAGC,NYU_BMS_Melanoma_13059,pool1,SP491907A02 +1,EP182060B03,EP182060B03,NYU_BMS_Melanoma_13059_P1,M21,iTru7_114_11,ACATAGGC,iTru5_03_H,CAGTGCTT,NYU_BMS_Melanoma_13059,pool2,EP182060B03 +1,EP422407B01,EP422407B01,NYU_BMS_Melanoma_13059_P1,O21,iTru7_114_12,CTCAGAGT,iTru5_04_H,TAGTGCCA,NYU_BMS_Melanoma_13059,pool1,EP422407B01 +1,SP573859A04,SP573859A04,NYU_BMS_Melanoma_13059_P1,A23,iTru7_201_01,CTTGGATG,iTru5_05_H,GATGGAGT,NYU_BMS_Melanoma_13059,pool2,SP573859A04 +1,SP584547A02,SP584547A02,NYU_BMS_Melanoma_13059_P1,C23,iTru7_201_02,CAGTTGGA,iTru5_06_H,CCTCGTTA,NYU_BMS_Melanoma_13059,pool1,SP584547A02 +1,EP182346B04,EP182346B04,NYU_BMS_Melanoma_13059_P1,E23,iTru7_201_03,GATAGGCT,iTru5_07_H,CGATTGGA,NYU_BMS_Melanoma_13059,pool2,EP182346B04 +1,AP668631B04,AP668631B04,NYU_BMS_Melanoma_13059_P1,G23,iTru7_201_04,TTGACAGG,iTru5_08_H,CCAACGAA,NYU_BMS_Melanoma_13059,pool1,AP668631B04 +1,EP451428B04,EP451428B04,NYU_BMS_Melanoma_13059_P1,I23,iTru7_201_05,AGAATGCC,iTru5_09_H,AGAAGGAC,NYU_BMS_Melanoma_13059,pool2,EP451428B04 +1,LP128538A01,LP128538A01,NYU_BMS_Melanoma_13059_P1,K23,iTru7_201_06,CTACATCC,iTru5_10_H,TGACCGTT,NYU_BMS_Melanoma_13059,pool1,LP128538A01 +1,SP490298A02,SP490298A02,NYU_BMS_Melanoma_13059_P1,M23,iTru7_201_07,TCATGGTG,iTru5_11_H,GCGTTAGA,NYU_BMS_Melanoma_13059,pool2,SP490298A02 +1,SP573860A01,SP573860A01,NYU_BMS_Melanoma_13059_P1,O23,iTru7_201_08,TACACGCT,iTru5_12_H,TCTAGGAG,NYU_BMS_Melanoma_13059,pool1,SP573860A01 +1,EP032412B02,EP032412B02,NYU_BMS_Melanoma_13059_P2,A2,iTru7_201_09,TACGGTTG,iTru5_13_A,GGTATAGG,NYU_BMS_Melanoma_13059,pool2,EP032412B02 +1,EP163771B01,EP163771B01,NYU_BMS_Melanoma_13059_P2,C2,iTru7_201_10,GGATACCA,iTru5_14_A,TCCGATCA,NYU_BMS_Melanoma_13059,pool1,EP163771B01 +1,LP169879A01,LP169879A01,NYU_BMS_Melanoma_13059_P2,E2,iTru7_201_11,TCGACATC,iTru5_15_A,CGACCTAA,NYU_BMS_Melanoma_13059,pool2,LP169879A01 +1,EP729433A02,EP729433A02,NYU_BMS_Melanoma_13059_P2,G2,iTru7_201_12,GTTGTAGC,iTru5_16_A,GACATCTC,NYU_BMS_Melanoma_13059,pool1,EP729433A02 +1,EP447940B04,EP447940B04,NYU_BMS_Melanoma_13059_P2,I2,iTru7_202_01,ATACGACC,iTru5_17_A,CCAGTATC,NYU_BMS_Melanoma_13059,pool2,EP447940B04 +1,SP584551A08,SP584551A08,NYU_BMS_Melanoma_13059_P2,K2,iTru7_202_02,TTCCAAGG,iTru5_18_A,ACGCTTCT,NYU_BMS_Melanoma_13059,pool1,SP584551A08 +1,EP216516B04,EP216516B04,NYU_BMS_Melanoma_13059_P2,M2,iTru7_202_03,TTGCAGAC,iTru5_19_A,AACGCACA,NYU_BMS_Melanoma_13059,pool2,EP216516B04 +1,EP023808B02,EP023808B02,NYU_BMS_Melanoma_13059_P2,O2,iTru7_202_04,TGCCATTC,iTru5_20_A,TGATCACG,NYU_BMS_Melanoma_13059,pool1,EP023808B02 +1,BLANK2_2A,BLANK2.2A,NYU_BMS_Melanoma_13059_P2,A4,iTru7_202_05,GATGTGTG,iTru5_21_A,GCGTATCA,NYU_BMS_Melanoma_13059,pool2,BLANK2.2A +1,BLANK2_2B,BLANK2.2B,NYU_BMS_Melanoma_13059_P2,C4,iTru7_202_06,ACTCTCGA,iTru5_22_A,GTGTCCTT,NYU_BMS_Melanoma_13059,pool1,BLANK2.2B +1,BLANK2_2C,BLANK2.2C,NYU_BMS_Melanoma_13059_P2,E4,iTru7_202_07,GAGTCTCT,iTru5_23_A,GGTAACGT,NYU_BMS_Melanoma_13059,pool2,BLANK2.2C +1,BLANK2_2D,BLANK2.2D,NYU_BMS_Melanoma_13059_P2,G4,iTru7_202_08,CAACACCT,iTru5_24_A,CGAGAGAA,NYU_BMS_Melanoma_13059,pool1,BLANK2.2D +1,BLANK2_2E,BLANK2.2E,NYU_BMS_Melanoma_13059_P2,I4,iTru7_202_09,CAGTCTTC,iTru5_13_B,CATTGACG,NYU_BMS_Melanoma_13059,pool2,BLANK2.2E +1,BLANK2_2F,BLANK2.2F,NYU_BMS_Melanoma_13059_P2,K4,iTru7_202_10,GGACTGTT,iTru5_14_B,GGTGATGA,NYU_BMS_Melanoma_13059,pool1,BLANK2.2F +1,BLANK2_2G,BLANK2.2G,NYU_BMS_Melanoma_13059_P2,M4,iTru7_202_11,CTTAGTGG,iTru5_15_B,AACCGTGT,NYU_BMS_Melanoma_13059,pool2,BLANK2.2G +1,BLANK2_2H,BLANK2.2H,NYU_BMS_Melanoma_13059_P2,O4,iTru7_202_12,ATTGCGTG,iTru5_16_B,CCTATTGG,NYU_BMS_Melanoma_13059,pool1,BLANK2.2H +1,SP573843A04,SP573843A04,NYU_BMS_Melanoma_13059_P2,A6,iTru7_203_01,GTAACGAC,iTru5_17_B,TCAGTAGG,NYU_BMS_Melanoma_13059,pool2,SP573843A04 +1,EP683835A01,EP683835A01,NYU_BMS_Melanoma_13059_P2,C6,iTru7_203_02,CTTGCTGT,iTru5_18_B,TATGCGGT,NYU_BMS_Melanoma_13059,pool1,EP683835A01 +1,SP573824A04,SP573824A04,NYU_BMS_Melanoma_13059_P2,E6,iTru7_203_03,GTTGTTCG,iTru5_19_B,ATGCCTAG,NYU_BMS_Melanoma_13059,pool2,SP573824A04 +1,SP335002A04,SP335002A04,NYU_BMS_Melanoma_13059_P2,G6,iTru7_203_04,CGTTGAGT,iTru5_20_B,CTAGCAGT,NYU_BMS_Melanoma_13059,pool1,SP335002A04 +1,SP478193A02,SP478193A02,NYU_BMS_Melanoma_13059_P2,I6,iTru7_203_05,TCGAACCA,iTru5_21_B,AGGTCAAC,NYU_BMS_Melanoma_13059,pool2,SP478193A02 +1,SP232311A04,SP232311A04,NYU_BMS_Melanoma_13059_P2,K6,iTru7_203_06,AGACCGTA,iTru5_22_B,GAACGTGA,NYU_BMS_Melanoma_13059,pool1,SP232311A04 +1,SP415021A02,SP415021A02,NYU_BMS_Melanoma_13059_P2,M6,iTru7_203_07,CAGAGTGT,iTru5_23_B,ATCATGCG,NYU_BMS_Melanoma_13059,pool2,SP415021A02 +1,SP231630A02,SP231630A02,NYU_BMS_Melanoma_13059_P2,O6,iTru7_203_08,GACAAGAG,iTru5_24_B,CAACGAGT,NYU_BMS_Melanoma_13059,pool1,SP231630A02 +1,SP641029A02,SP641029A02,NYU_BMS_Melanoma_13059_P2,A8,iTru7_203_09,GAACACAC,iTru5_13_C,CGCAATGT,NYU_BMS_Melanoma_13059,pool2,SP641029A02 +1,SP232310A04,SP232310A04,NYU_BMS_Melanoma_13059_P2,C8,iTru7_203_10,GCTTAGCT,iTru5_14_C,AACAAGGC,NYU_BMS_Melanoma_13059,pool1,SP232310A04 +1,EP617442B01,EP617442B01,NYU_BMS_Melanoma_13059_P2,E8,iTru7_203_11,GAAGGAAG,iTru5_15_C,ACCATGTC,NYU_BMS_Melanoma_13059,pool2,EP617442B01 +1,EP587478B04,EP587478B04,NYU_BMS_Melanoma_13059_P2,G8,iTru7_203_12,CAGTTCTG,iTru5_16_C,AATCCAGC,NYU_BMS_Melanoma_13059,pool1,EP587478B04 +1,EP447928B04,EP447928B04,NYU_BMS_Melanoma_13059_P2,I8,iTru7_204_01,CAGGAGAT,iTru5_17_C,TTGCAACG,NYU_BMS_Melanoma_13059,pool2,EP447928B04 +1,EP587475B04,EP587475B04,NYU_BMS_Melanoma_13059_P2,K8,iTru7_204_02,GTAGCATC,iTru5_18_C,ACCTTCGA,NYU_BMS_Melanoma_13059,pool1,EP587475B04 +1,EP675042B01,EP675042B01,NYU_BMS_Melanoma_13059_P2,M8,iTru7_204_03,TCGTTCGT,iTru5_19_C,CATACGGA,NYU_BMS_Melanoma_13059,pool2,EP675042B01 +1,EP554513B02,EP554513B02,NYU_BMS_Melanoma_13059_P2,O8,iTru7_204_04,GGCAAGTT,iTru5_20_C,GACCGATA,NYU_BMS_Melanoma_13059,pool1,EP554513B02 +1,EP702221B04,EP702221B04,NYU_BMS_Melanoma_13059_P2,A10,iTru7_204_05,ACCATGTG,iTru5_21_C,AAGCTGGT,NYU_BMS_Melanoma_13059,pool2,EP702221B04 +1,AP568787B02,AP568787B02,NYU_BMS_Melanoma_13059_P2,C10,iTru7_204_06,CAACGGAT,iTru5_22_C,ACACCTCA,NYU_BMS_Melanoma_13059,pool1,AP568787B02 +1,EP054632B01,EP054632B01,NYU_BMS_Melanoma_13059_P2,E10,iTru7_204_07,CAATCGAC,iTru5_23_C,CGGAGTAT,NYU_BMS_Melanoma_13059,pool2,EP054632B01 +1,EP121013B01,EP121013B01,NYU_BMS_Melanoma_13059_P2,G10,iTru7_204_08,GTGTTCCT,iTru5_24_C,CTCGACTT,NYU_BMS_Melanoma_13059,pool1,EP121013B01 +1,EP649418A02,EP649418A02,NYU_BMS_Melanoma_13059_P2,I10,iTru7_204_09,AGGAACCT,iTru5_13_D,ATCCACGA,NYU_BMS_Melanoma_13059,pool2,EP649418A02 +1,EP573313B01,EP573313B01,NYU_BMS_Melanoma_13059_P2,K10,iTru7_204_10,ACCTTCTC,iTru5_14_D,ACAGTTCG,NYU_BMS_Melanoma_13059,pool1,EP573313B01 +1,LP154981A01,LP154981A01,NYU_BMS_Melanoma_13059_P2,M10,iTru7_204_11,CCGTAAGA,iTru5_15_D,ACAAGACG,NYU_BMS_Melanoma_13059,pool2,LP154981A01 +1,AP470859B01,AP470859B01,NYU_BMS_Melanoma_13059_P2,O10,iTru7_204_12,ATCGGTGT,iTru5_16_D,ATCGTGGT,NYU_BMS_Melanoma_13059,pool1,AP470859B01 +1,LP154986A01,LP154986A01,NYU_BMS_Melanoma_13059_P2,A12,iTru7_205_01,AGCTCCTA,iTru5_17_D,AGTCAGGT,NYU_BMS_Melanoma_13059,pool2,LP154986A01 +1,AP732307B04,AP732307B04,NYU_BMS_Melanoma_13059_P2,C12,iTru7_205_02,CCTTGATC,iTru5_18_D,CATCAACC,NYU_BMS_Melanoma_13059,pool1,AP732307B04 +1,EP533426B03,EP533426B03,NYU_BMS_Melanoma_13059_P2,E12,iTru7_205_03,CCATTCAC,iTru5_19_D,GGTCACTA,NYU_BMS_Melanoma_13059,pool2,EP533426B03 +1,EP587476B04,EP587476B04,NYU_BMS_Melanoma_13059_P2,G12,iTru7_205_04,GGACAATC,iTru5_20_D,CGGCATTA,NYU_BMS_Melanoma_13059,pool1,EP587476B04 +1,AP696363B02,AP696363B02,NYU_BMS_Melanoma_13059_P2,I12,iTru7_205_05,AAGGCGTT,iTru5_21_D,ACTCGATC,NYU_BMS_Melanoma_13059,pool2,AP696363B02 +1,EP587477B04,EP587477B04,NYU_BMS_Melanoma_13059_P2,K12,iTru7_205_06,GCCATAAC,iTru5_22_D,ATAGGTCC,NYU_BMS_Melanoma_13059,pool1,EP587477B04 +1,SP683466A02,SP683466A02,NYU_BMS_Melanoma_13059_P2,M12,iTru7_205_07,GAAGTTGG,iTru5_23_D,CAGTCACA,NYU_BMS_Melanoma_13059,pool2,SP683466A02 +1,EP554518B04,EP554518B04,NYU_BMS_Melanoma_13059_P2,O12,iTru7_205_08,AGCCAAGT,iTru5_24_D,TAGTGGTG,NYU_BMS_Melanoma_13059,pool1,EP554518B04 +1,EP533429B04,EP533429B04,NYU_BMS_Melanoma_13059_P2,A14,iTru7_205_09,TGACTGAC,iTru5_13_E,CTCCTGAA,NYU_BMS_Melanoma_13059,pool2,EP533429B04 +1,EP431570B01,EP431570B01,NYU_BMS_Melanoma_13059_P2,C14,iTru7_205_10,CACCTGTT,iTru5_14_E,AATCGCTG,NYU_BMS_Melanoma_13059,pool1,EP431570B01 +1,EP202095B04,EP202095B04,NYU_BMS_Melanoma_13059_P2,E14,iTru7_205_11,ATCCGGTA,iTru5_15_E,TGATAGGC,NYU_BMS_Melanoma_13059,pool2,EP202095B04 +1,EP504030B04,EP504030B04,NYU_BMS_Melanoma_13059_P2,G14,iTru7_205_12,ATCTGTCC,iTru5_16_E,ATGCGTCA,NYU_BMS_Melanoma_13059,pool1,EP504030B04 +1,EP207036B01,EP207036B01,NYU_BMS_Melanoma_13059_P2,I14,iTru7_206_01,CCAAGACT,iTru5_17_E,CAGCATAC,NYU_BMS_Melanoma_13059,pool2,EP207036B01 +1,EP393717B01,EP393717B01,NYU_BMS_Melanoma_13059_P2,K14,iTru7_206_02,ATGGCGAA,iTru5_18_E,AAGTGCAG,NYU_BMS_Melanoma_13059,pool1,EP393717B01 +1,SP491898A02,SP491898A02,NYU_BMS_Melanoma_13059_P2,M14,iTru7_206_03,GGTAGTGT,iTru5_19_E,GTATTCCG,NYU_BMS_Melanoma_13059,pool2,SP491898A02 +1,EP484973B04,EP484973B04,NYU_BMS_Melanoma_13059_P2,O14,iTru7_206_04,TCGCTGTT,iTru5_20_E,GTGATCCA,NYU_BMS_Melanoma_13059,pool1,EP484973B04 +1,EP479794B02,EP479794B02,NYU_BMS_Melanoma_13059_P2,A16,iTru7_206_05,AACGTGGA,iTru5_21_E,TATGGCAC,NYU_BMS_Melanoma_13059,pool2,EP479794B02 +1,EP554515B04,EP554515B04,NYU_BMS_Melanoma_13059_P2,C16,iTru7_206_06,AACGACGT,iTru5_22_E,ACCATAGG,NYU_BMS_Melanoma_13059,pool1,EP554515B04 +1,SP631994A04,SP631994A04,NYU_BMS_Melanoma_13059_P2,E16,iTru7_206_07,AACAGGAC,iTru5_23_E,CTCCAATC,NYU_BMS_Melanoma_13059,pool2,SP631994A04 +1,EP921593A04,EP921593A04,NYU_BMS_Melanoma_13059_P2,G16,iTru7_206_08,AAGCGCAT,iTru5_24_E,AGATACGG,NYU_BMS_Melanoma_13059,pool1,EP921593A04 +1,AP787247B04,AP787247B04,NYU_BMS_Melanoma_13059_P2,I16,iTru7_206_09,CACTGACA,iTru5_13_F,TCGATGAC,NYU_BMS_Melanoma_13059,pool2,AP787247B04 +1,EP090129B04,EP090129B04,NYU_BMS_Melanoma_13059_P2,K16,iTru7_206_10,AGGTCACT,iTru5_14_F,CCAACACT,NYU_BMS_Melanoma_13059,pool1,EP090129B04 +1,EP447975B02,EP447975B02,NYU_BMS_Melanoma_13059_P2,M16,iTru7_206_11,GTCACTGT,iTru5_15_F,CTTCACTG,NYU_BMS_Melanoma_13059,pool2,EP447975B02 +1,EP212214B01,EP212214B01,NYU_BMS_Melanoma_13059_P2,O16,iTru7_206_12,ATGCCAAC,iTru5_16_F,CGATGTTC,NYU_BMS_Melanoma_13059,pool1,EP212214B01 +1,EP410042B01,EP410042B01,NYU_BMS_Melanoma_13059_P2,A18,iTru7_207_01,CACGTTGT,iTru5_17_F,ACCGGTTA,NYU_BMS_Melanoma_13059,pool2,EP410042B01 +1,SP404409A02,SP404409A02,NYU_BMS_Melanoma_13059_P2,C18,iTru7_207_02,TATTCCGG,iTru5_18_F,CTTACAGC,NYU_BMS_Melanoma_13059,pool1,SP404409A02 +1,SP247340A04,SP247340A04,NYU_BMS_Melanoma_13059_P2,E18,iTru7_207_03,TGCTTCCA,iTru5_19_F,TGGCTCTT,NYU_BMS_Melanoma_13059,pool2,SP247340A04 +1,AP029018B01,AP029018B01,NYU_BMS_Melanoma_13059_P2,G18,iTru7_207_04,GTCTAGGT,iTru5_20_F,AAGACCGT,NYU_BMS_Melanoma_13059,pool1,AP029018B01 +1,EP872341A01,EP872341A01,NYU_BMS_Melanoma_13059_P2,I18,iTru7_207_05,GTTCAACC,iTru5_21_F,GGACATCA,NYU_BMS_Melanoma_13059,pool2,EP872341A01 +1,AP062219B03,AP062219B03,NYU_BMS_Melanoma_13059_P2,K18,iTru7_207_06,CGCAATCT,iTru5_22_F,TTGGTGCA,NYU_BMS_Melanoma_13059,pool1,AP062219B03 +1,EP790020A02,EP790020A02,NYU_BMS_Melanoma_13059_P2,M18,iTru7_207_07,TTAAGCGG,iTru5_23_F,AAGCGTTC,NYU_BMS_Melanoma_13059,pool2,EP790020A02 +1,EP808112A04,EP808112A04,NYU_BMS_Melanoma_13059_P2,O18,iTru7_207_08,TGCTTGGT,iTru5_24_F,ACTCTCCA,NYU_BMS_Melanoma_13059,pool1,EP808112A04 +1,SP404403A02,SP404403A02,NYU_BMS_Melanoma_13059_P2,A20,iTru7_207_09,ACACACTC,iTru5_13_G,GAACCTTC,NYU_BMS_Melanoma_13059,pool2,SP404403A02 +1,EP073160B01,EP073160B01,NYU_BMS_Melanoma_13059_P2,C20,iTru7_207_10,CCACTTCT,iTru5_14_G,GGAACATG,NYU_BMS_Melanoma_13059,pool1,EP073160B01 +1,EP012991B03,EP012991B03,NYU_BMS_Melanoma_13059_P2,E20,iTru7_207_11,TTGGTCTC,iTru5_15_G,GCCTATGT,NYU_BMS_Melanoma_13059,pool2,EP012991B03 +1,SP317297A02,SP317297A02,NYU_BMS_Melanoma_13059_P2,G20,iTru7_207_12,CTCATCAG,iTru5_16_G,CCGTAACT,NYU_BMS_Melanoma_13059,pool1,SP317297A02 +1,EP656055A04,EP656055A04,NYU_BMS_Melanoma_13059_P2,I20,iTru7_208_01,ATGACGTC,iTru5_17_G,CGGATCAA,NYU_BMS_Melanoma_13059,pool2,EP656055A04 +1,EP649623A01,EP649623A01,NYU_BMS_Melanoma_13059_P2,K20,iTru7_208_02,AACCTTGG,iTru5_18_G,CCACATTG,NYU_BMS_Melanoma_13059,pool1,EP649623A01 +1,EP790019A01,EP790019A01,NYU_BMS_Melanoma_13059_P2,M20,iTru7_208_03,GTCTTGCA,iTru5_19_G,CTCTATCG,NYU_BMS_Melanoma_13059,pool2,EP790019A01 +1,SP257519A04,SP257519A04,NYU_BMS_Melanoma_13059_P2,O20,iTru7_208_04,CAAGTGCA,iTru5_20_G,TGTGTCAG,NYU_BMS_Melanoma_13059,pool1,SP257519A04 +1,EP808104A01,EP808104A01,NYU_BMS_Melanoma_13059_P2,A22,iTru7_208_05,TCCGAGTT,iTru5_21_G,CGCAACTA,NYU_BMS_Melanoma_13059,pool2,EP808104A01 +1,EP808106A01,EP808106A01,NYU_BMS_Melanoma_13059_P2,C22,iTru7_208_06,ACCTAAGG,iTru5_22_G,GATCAGAC,NYU_BMS_Melanoma_13059,pool1,EP808106A01 +1,SP231629A02,SP231629A02,NYU_BMS_Melanoma_13059_P2,E22,iTru7_208_07,TTGGACGT,iTru5_23_G,ATTCCGCT,NYU_BMS_Melanoma_13059,pool2,SP231629A02 +1,EP675044A01,EP675044A01,NYU_BMS_Melanoma_13059_P2,G22,iTru7_208_08,GATAGCGA,iTru5_24_G,ATCCTTCC,NYU_BMS_Melanoma_13059,pool1,EP675044A01 +1,EP657260A01,EP657260A01,NYU_BMS_Melanoma_13059_P2,I22,iTru7_208_09,TTGGTGAG,iTru5_13_H,GCTTCACA,NYU_BMS_Melanoma_13059,pool2,EP657260A01 +1,EP808110A04,EP808110A04,NYU_BMS_Melanoma_13059_P2,K22,iTru7_208_10,AACTGGTG,iTru5_14_H,CTTCGGTT,NYU_BMS_Melanoma_13059,pool1,EP808110A04 +1,AP032413B04,AP032413B04,NYU_BMS_Melanoma_13059_P2,M22,iTru7_208_11,TAGCCGAA,iTru5_15_H,CATGGATC,NYU_BMS_Melanoma_13059,pool2,AP032413B04 +1,EP843906A04,EP843906A04,NYU_BMS_Melanoma_13059_P2,O22,iTru7_208_12,TGCGAACT,iTru5_16_H,GTCAACAG,NYU_BMS_Melanoma_13059,pool1,EP843906A04 +1,AP173305B04,AP173305B04,NYU_BMS_Melanoma_13059_P2,A24,iTru7_209_01,GACTTAGG,iTru5_17_H,AATTCCGG,NYU_BMS_Melanoma_13059,pool2,AP173305B04 +1,SP231628A02,SP231628A02,NYU_BMS_Melanoma_13059_P2,C24,iTru7_209_02,ACACCAGT,iTru5_18_H,GGCGAATA,NYU_BMS_Melanoma_13059,pool1,SP231628A02 +1,AP173301B04,AP173301B04,NYU_BMS_Melanoma_13059_P2,E24,iTru7_209_03,CCTGATTG,iTru5_19_H,AGGAGGTT,NYU_BMS_Melanoma_13059,pool2,AP173301B04 +1,SP404405A02,SP404405A02,NYU_BMS_Melanoma_13059_P2,G24,iTru7_209_04,TTGTGTGC,iTru5_20_H,ACTCTGAG,NYU_BMS_Melanoma_13059,pool1,SP404405A02 +1,EP649653A04,EP649653A04,NYU_BMS_Melanoma_13059_P2,I24,iTru7_209_05,TACCACAG,iTru5_21_H,GCCTTCTT,NYU_BMS_Melanoma_13059,pool2,EP649653A04 +1,EP718687A04,EP718687A04,NYU_BMS_Melanoma_13059_P2,K24,iTru7_209_06,ATTCGAGG,iTru5_22_H,TGGACCAT,NYU_BMS_Melanoma_13059,pool1,EP718687A04 +1,AP905750A02,AP905750A02,NYU_BMS_Melanoma_13059_P2,M24,iTru7_209_07,GCACGTAA,iTru5_23_H,GCATAGTC,NYU_BMS_Melanoma_13059,pool2,AP905750A02 +1,EP738468A01,EP738468A01,NYU_BMS_Melanoma_13059_P2,O24,iTru7_209_08,GTGTGACA,iTru5_24_H,TACACACG,NYU_BMS_Melanoma_13059,pool1,EP738468A01 +1,C6,C6,NYU_BMS_Melanoma_13059_P3,B1,iTru7_209_09,CTGGTTCT,iTru5_101_A,AACAACCG,NYU_BMS_Melanoma_13059,pool2,C6 +1,EP890157A02,EP890157A02,NYU_BMS_Melanoma_13059_P3,D1,iTru7_209_10,ACTGTGTC,iTru5_102_A,AAGCCTGA,NYU_BMS_Melanoma_13059,pool1,EP890157A02 +1,SP353893A02,SP353893A02,NYU_BMS_Melanoma_13059_P3,F1,iTru7_209_11,CCATACGT,iTru5_103_A,AAGGACCA,NYU_BMS_Melanoma_13059,pool2,SP353893A02 +1,EP944059A02,EP944059A02,NYU_BMS_Melanoma_13059_P3,H1,iTru7_209_12,GGTACTAC,iTru5_104_A,ACAACGTG,NYU_BMS_Melanoma_13059,pool1,EP944059A02 +1,EP970005A01,EP970005A01,NYU_BMS_Melanoma_13059_P3,J1,iTru7_210_01,CAGTCCAA,iTru5_105_A,ACGAACGA,NYU_BMS_Melanoma_13059,pool2,EP970005A01 +1,EP927461A04,EP927461A04,NYU_BMS_Melanoma_13059_P3,L1,iTru7_210_02,TCGTAGTC,iTru5_106_A,ACGTCCAA,NYU_BMS_Melanoma_13059,pool1,EP927461A04 +1,EP808111A03,EP808111A03,NYU_BMS_Melanoma_13059_P3,N1,iTru7_210_03,TCGAGTGA,iTru5_107_A,ACTGGTGT,NYU_BMS_Melanoma_13059,pool2,EP808111A03 +1,EP927459A04,EP927459A04,NYU_BMS_Melanoma_13059_P3,P1,iTru7_210_04,TGTAGCCA,iTru5_108_A,AGATCGTC,NYU_BMS_Melanoma_13059,pool1,EP927459A04 +1,SP317293A02,SP317293A02,NYU_BMS_Melanoma_13059_P3,B3,iTru7_210_05,TGCAGGTA,iTru5_109_A,AGCGAGAT,NYU_BMS_Melanoma_13059,pool2,SP317293A02 +1,SP235186A04,SP235186A04,NYU_BMS_Melanoma_13059_P3,D3,iTru7_210_06,CTAGGTGA,iTru5_110_A,AGGATAGC,NYU_BMS_Melanoma_13059,pool1,SP235186A04 +1,SP399724A04,SP399724A04,NYU_BMS_Melanoma_13059_P3,F3,iTru7_210_07,CTCCATGT,iTru5_111_A,AGGTGTTG,NYU_BMS_Melanoma_13059,pool2,SP399724A04 +1,EP738469A01,EP738469A01,NYU_BMS_Melanoma_13059_P3,H3,iTru7_210_08,CTTACAGC,iTru5_112_A,AGTCTTGG,NYU_BMS_Melanoma_13059,pool1,EP738469A01 +1,SP284095A03,SP284095A03,NYU_BMS_Melanoma_13059_P3,J3,iTru7_210_09,CGTATTCG,iTru5_101_B,GGTTGGTA,NYU_BMS_Melanoma_13059,pool2,SP284095A03 +1,C5,C5,NYU_BMS_Melanoma_13059_P3,L3,iTru7_210_10,ATTCTGGC,iTru5_102_B,GGAGGAAT,NYU_BMS_Melanoma_13059,pool1,C5 +1,EP337325B04,EP337325B04,NYU_BMS_Melanoma_13059_P3,N3,iTru7_210_11,TACCAGGA,iTru5_103_B,GTAAGGTG,NYU_BMS_Melanoma_13059,pool2,EP337325B04 +1,EP759450A04,EP759450A04,NYU_BMS_Melanoma_13059_P3,P3,iTru7_210_12,TACATCGG,iTru5_104_B,GGTGTACA,NYU_BMS_Melanoma_13059,pool1,EP759450A04 +1,BLANK3_3A,BLANK3.3A,NYU_BMS_Melanoma_13059_P3,B5,iTru7_301_01,GTGGTGTT,iTru5_105_B,GGATGTAG,NYU_BMS_Melanoma_13059,pool2,BLANK3.3A +1,BLANK3_3B,BLANK3.3B,NYU_BMS_Melanoma_13059_P3,D5,iTru7_301_02,CGCATGAT,iTru5_106_B,GTCCTGTT,NYU_BMS_Melanoma_13059,pool1,BLANK3.3B +1,BLANK3_3C,BLANK3.3C,NYU_BMS_Melanoma_13059_P3,F5,iTru7_301_03,AGTCGACA,iTru5_107_B,GTACCACA,NYU_BMS_Melanoma_13059,pool2,BLANK3.3C +1,BLANK3_3D,BLANK3.3D,NYU_BMS_Melanoma_13059_P3,H5,iTru7_301_04,GTGAGCTT,iTru5_108_B,GATCTCAG,NYU_BMS_Melanoma_13059,pool1,BLANK3.3D +1,BLANK3_3E,BLANK3.3E,NYU_BMS_Melanoma_13059_P3,J5,iTru7_301_05,GACATTCC,iTru5_109_B,GAGCTCTA,NYU_BMS_Melanoma_13059,pool2,BLANK3.3E +1,BLANK3_3F,BLANK3.3F,NYU_BMS_Melanoma_13059_P3,L5,iTru7_301_06,AGTTCGTC,iTru5_110_B,TACTAGCG,NYU_BMS_Melanoma_13059,pool1,BLANK3.3F +1,BLANK3_3G,BLANK3.3G,NYU_BMS_Melanoma_13059_P3,N5,iTru7_301_07,TAATGCCG,iTru5_111_B,GCACACAA,NYU_BMS_Melanoma_13059,pool2,BLANK3.3G +1,BLANK3_3H,BLANK3.3H,NYU_BMS_Melanoma_13059_P3,P5,iTru7_301_08,CGACCATT,iTru5_112_B,GAATCACC,NYU_BMS_Melanoma_13059,pool1,BLANK3.3H +1,AP006367B02,AP006367B02,NYU_BMS_Melanoma_13059_P3,B7,iTru7_301_09,CTGAAGCT,iTru5_101_C,AACAGCGA,NYU_BMS_Melanoma_13059,pool2,AP006367B02 +1,EP929277A02,EP929277A02,NYU_BMS_Melanoma_13059_P3,D7,iTru7_301_10,TTGAGGCA,iTru5_102_C,AAGCGACT,NYU_BMS_Melanoma_13059,pool1,EP929277A02 +1,AP324642B04,AP324642B04,NYU_BMS_Melanoma_13059_P3,F7,iTru7_301_11,GATCGAGT,iTru5_103_C,AAGGCGTA,NYU_BMS_Melanoma_13059,pool2,AP324642B04 +1,EP786631A04,EP786631A04,NYU_BMS_Melanoma_13059_P3,H7,iTru7_301_12,ATACTCCG,iTru5_104_C,ACACCGAT,NYU_BMS_Melanoma_13059,pool1,EP786631A04 +1,EP657385A04,EP657385A04,NYU_BMS_Melanoma_13059_P3,J7,iTru7_302_01,AAGTCCGT,iTru5_105_C,ACGAATCC,NYU_BMS_Melanoma_13059,pool2,EP657385A04 +1,SP235189A01,SP235189A01,NYU_BMS_Melanoma_13059_P3,L7,iTru7_302_02,TAGCGTCT,iTru5_106_C,ACTACGGT,NYU_BMS_Melanoma_13059,pool1,SP235189A01 +1,EP448041B04,EP448041B04,NYU_BMS_Melanoma_13059_P3,N7,iTru7_302_03,TGACGCAT,iTru5_107_C,AGAAGCCT,NYU_BMS_Melanoma_13059,pool2,EP448041B04 +1,SP231631A02,SP231631A02,NYU_BMS_Melanoma_13059_P3,P7,iTru7_302_04,AGCGTGTT,iTru5_108_C,AGATTGCG,NYU_BMS_Melanoma_13059,pool1,SP231631A02 +1,SP280481A02,SP280481A02,NYU_BMS_Melanoma_13059_P3,B9,iTru7_302_05,TGCACCAA,iTru5_109_C,AGCGTGTA,NYU_BMS_Melanoma_13059,pool2,SP280481A02 +1,AP032412B04,AP032412B04,NYU_BMS_Melanoma_13059_P3,D9,iTru7_302_06,ATCACACG,iTru5_110_C,AGGCTGAA,NYU_BMS_Melanoma_13059,pool1,AP032412B04 +1,EP649737A03,EP649737A03,NYU_BMS_Melanoma_13059_P3,F9,iTru7_302_07,ATGCCTGT,iTru5_111_C,AGGTTCCT,NYU_BMS_Melanoma_13059,pool2,EP649737A03 +1,AP967057A04,AP967057A04,NYU_BMS_Melanoma_13059_P3,H9,iTru7_302_08,ACCTGACT,iTru5_112_C,AGTGACCT,NYU_BMS_Melanoma_13059,pool1,AP967057A04 +1,EP876243A04,EP876243A04,NYU_BMS_Melanoma_13059_P3,J9,iTru7_302_09,GCTTCGAA,iTru5_101_D,GGTTAGCT,NYU_BMS_Melanoma_13059,pool2,EP876243A04 +1,SP229387A04,SP229387A04,NYU_BMS_Melanoma_13059_P3,L9,iTru7_302_10,CGGTCATA,iTru5_102_D,GTAGCGTA,NYU_BMS_Melanoma_13059,pool1,SP229387A04 +1,EP667743A04,EP667743A04,NYU_BMS_Melanoma_13059_P3,N9,iTru7_302_11,GTTAGACG,iTru5_103_D,GGACTACT,NYU_BMS_Melanoma_13059,pool2,EP667743A04 +1,SP246941A01,SP246941A01,NYU_BMS_Melanoma_13059_P3,P9,iTru7_302_12,TCTAACGC,iTru5_104_D,TGGTTCGA,NYU_BMS_Melanoma_13059,pool1,SP246941A01 +1,AP745799A04,AP745799A04,NYU_BMS_Melanoma_13059_P3,B11,iTru7_303_01,ATAGCGGT,iTru5_105_D,GGAGTCTT,NYU_BMS_Melanoma_13059,pool2,AP745799A04 +1,SP205732A02,SP205732A02,NYU_BMS_Melanoma_13059_P3,D11,iTru7_303_02,GGACCTAT,iTru5_106_D,GGATTCAC,NYU_BMS_Melanoma_13059,pool1,SP205732A02 +1,SP230382A04,SP230382A04,NYU_BMS_Melanoma_13059_P3,F11,iTru7_303_03,CGATGCTT,iTru5_107_D,TCGGATTC,NYU_BMS_Melanoma_13059,pool2,SP230382A04 +1,SP230380A02,SP230380A02,NYU_BMS_Melanoma_13059_P3,H11,iTru7_303_04,GAGCTTGT,iTru5_108_D,GAGCAATC,NYU_BMS_Melanoma_13059,pool1,SP230380A02 +1,SP230381A01,SP230381A01,NYU_BMS_Melanoma_13059_P3,J11,iTru7_303_05,GTGAAGTG,iTru5_109_D,GATCCACT,NYU_BMS_Melanoma_13059,pool2,SP230381A01 +1,SP205754A01,SP205754A01,NYU_BMS_Melanoma_13059_P3,L11,iTru7_303_06,GAGTGGTT,iTru5_110_D,GAAGACTG,NYU_BMS_Melanoma_13059,pool1,SP205754A01 +1,EP606662B04,EP606662B04,NYU_BMS_Melanoma_13059_P3,N11,iTru7_303_07,TGATACGC,iTru5_111_D,GCCACTTA,NYU_BMS_Melanoma_13059,pool2,EP606662B04 +1,AP780167B02,AP780167B02,NYU_BMS_Melanoma_13059_P3,P11,iTru7_303_08,AGCAGATG,iTru5_112_D,TCCATTGC,NYU_BMS_Melanoma_13059,pool1,AP780167B02 +1,EP447927B04,EP447927B04,NYU_BMS_Melanoma_13059_P3,B13,iTru7_303_09,CCAGTGTT,iTru5_101_E,AACAGTCC,NYU_BMS_Melanoma_13059,pool2,EP447927B04 +1,C18,C18,NYU_BMS_Melanoma_13059_P3,D13,iTru7_303_10,ATTCCTCC,iTru5_102_E,AAGCTCAC,NYU_BMS_Melanoma_13059,pool1,C18 +1,LP191039A01,LP191039A01,NYU_BMS_Melanoma_13059_P3,F13,iTru7_303_11,CTAACTCG,iTru5_103_E,AAGTCCTC,NYU_BMS_Melanoma_13059,pool2,LP191039A01 +1,EP606663B04,EP606663B04,NYU_BMS_Melanoma_13059_P3,H13,iTru7_303_12,GATGAGAC,iTru5_104_E,ACACTCTG,NYU_BMS_Melanoma_13059,pool1,EP606663B04 +1,EP573296B01,EP573296B01,NYU_BMS_Melanoma_13059_P3,J13,iTru7_304_01,TCAGGCTT,iTru5_105_E,ACGGTACA,NYU_BMS_Melanoma_13059,pool2,EP573296B01 +1,EP447926B04,EP447926B04,NYU_BMS_Melanoma_13059_P3,L13,iTru7_304_02,GTTCTCGT,iTru5_106_E,ACTCCTAC,NYU_BMS_Melanoma_13059,pool1,EP447926B04 +1,LP127767A01,LP127767A01,NYU_BMS_Melanoma_13059_P3,N13,iTru7_304_03,ATCGATCG,iTru5_107_E,AGAGGATG,NYU_BMS_Melanoma_13059,pool2,LP127767A01 +1,EP479266B04,EP479266B04,NYU_BMS_Melanoma_13059_P3,P13,iTru7_304_04,CCTCAGTT,iTru5_108_E,AGCCGTAA,NYU_BMS_Melanoma_13059,pool1,EP479266B04 +1,LP128543A01,LP128543A01,NYU_BMS_Melanoma_13059_P3,B15,iTru7_304_05,ACTGCTAG,iTru5_109_E,AGCTTCAG,NYU_BMS_Melanoma_13059,pool2,LP128543A01 +1,EP479270B03,EP479270B03,NYU_BMS_Melanoma_13059_P3,D15,iTru7_304_06,TCCGTGAA,iTru5_110_E,AGGTAGGA,NYU_BMS_Melanoma_13059,pool1,EP479270B03 +1,EP921594A04,EP921594A04,NYU_BMS_Melanoma_13059_P3,F15,iTru7_304_07,GGATTCGT,iTru5_111_E,AGTACACG,NYU_BMS_Melanoma_13059,pool2,EP921594A04 +1,EP554501B04,EP554501B04,NYU_BMS_Melanoma_13059_P3,H15,iTru7_304_08,GGTCAGAT,iTru5_112_E,AGTGCATC,NYU_BMS_Melanoma_13059,pool1,EP554501B04 +1,EP542577B04,EP542577B04,NYU_BMS_Melanoma_13059_P3,J15,iTru7_304_09,TCGTGGAT,iTru5_101_F,TTGGACTG,NYU_BMS_Melanoma_13059,pool2,EP542577B04 +1,EP487995B04,EP487995B04,NYU_BMS_Melanoma_13059_P3,L15,iTru7_304_10,CGTGTGTA,iTru5_102_F,GTCGATTG,NYU_BMS_Melanoma_13059,pool1,EP487995B04 +1,EP542578B04,EP542578B04,NYU_BMS_Melanoma_13059_P3,N15,iTru7_304_11,GTGTCTGA,iTru5_103_F,GGCATTCT,NYU_BMS_Melanoma_13059,pool2,EP542578B04 +1,EP573310B01,EP573310B01,NYU_BMS_Melanoma_13059_P3,P15,iTru7_304_12,GAATCGTG,iTru5_104_F,TGGTATCC,NYU_BMS_Melanoma_13059,pool1,EP573310B01 +1,EP244366B01,EP244366B01,NYU_BMS_Melanoma_13059_P3,B17,iTru7_305_01,GCGATAGT,iTru5_105_F,GGCAAGTT,NYU_BMS_Melanoma_13059,pool2,EP244366B01 +1,EP533389B03,EP533389B03,NYU_BMS_Melanoma_13059_P3,D17,iTru7_305_02,GGCTATTG,iTru5_106_F,GTCTGAGT,NYU_BMS_Melanoma_13059,pool1,EP533389B03 +1,EP244360B01,EP244360B01,NYU_BMS_Melanoma_13059_P3,F17,iTru7_305_03,AGTTACGG,iTru5_107_F,TCTACGCA,NYU_BMS_Melanoma_13059,pool2,EP244360B01 +1,AP911328B01,AP911328B01,NYU_BMS_Melanoma_13059_P3,H17,iTru7_305_04,CGTACGAA,iTru5_108_F,GAGGCATT,NYU_BMS_Melanoma_13059,pool1,AP911328B01 +1,AP481403B02,AP481403B02,NYU_BMS_Melanoma_13059_P3,J17,iTru7_305_05,ACCACGAT,iTru5_109_F,GCTAAGGA,NYU_BMS_Melanoma_13059,pool2,AP481403B02 +1,22_001_801_552_503_00,22.001.801.552.503.00,NYU_BMS_Melanoma_13059_P3,L17,iTru7_305_06,GATTACCG,iTru5_110_F,GCCAGAAT,NYU_BMS_Melanoma_13059,pool1,22_001_801_552_503_00 +1,EP372981B04,EP372981B04,NYU_BMS_Melanoma_13059_P3,N17,iTru7_305_07,GAGATACG,iTru5_111_F,TAAGTGGC,NYU_BMS_Melanoma_13059,pool2,EP372981B04 +1,EP447929B04,EP447929B04,NYU_BMS_Melanoma_13059_P3,P17,iTru7_305_08,CGACGTTA,iTru5_112_F,GCAATGAG,NYU_BMS_Melanoma_13059,pool1,EP447929B04 +1,SP573849A04,SP573849A04,NYU_BMS_Melanoma_13059_P3,B19,iTru7_305_09,GAGATGTC,iTru5_101_G,AACTGAGG,NYU_BMS_Melanoma_13059,pool2,SP573849A04 +1,SP577399A02,SP577399A02,NYU_BMS_Melanoma_13059_P3,D19,iTru7_305_10,GATTGGAG,iTru5_102_G,AAGGAAGG,NYU_BMS_Melanoma_13059,pool1,SP577399A02 +1,EP606656B03,EP606656B03,NYU_BMS_Melanoma_13059_P3,F19,iTru7_305_11,GCAATTCG,iTru5_103_G,AATGGTCG,NYU_BMS_Melanoma_13059,pool2,EP606656B03 +1,LP166715A01,LP166715A01,NYU_BMS_Melanoma_13059_P3,H19,iTru7_305_12,CGTCAATG,iTru5_104_G,ACAGCAAG,NYU_BMS_Melanoma_13059,pool1,LP166715A01 +1,AP668628B04,AP668628B04,NYU_BMS_Melanoma_13059_P3,J19,iTru7_401_01,ATGCACGA,iTru5_105_G,ACGTATGG,NYU_BMS_Melanoma_13059,pool2,AP668628B04 +1,C14,C14,NYU_BMS_Melanoma_13059_P3,L19,iTru7_401_02,ATCGCCAT,iTru5_106_G,ACTGCACT,NYU_BMS_Melanoma_13059,pool1,C14 +1,EP446610B02,EP446610B02,NYU_BMS_Melanoma_13059_P3,N19,iTru7_401_03,TCTCGCAA,iTru5_107_G,AGAGTCCA,NYU_BMS_Melanoma_13059,pool2,EP446610B02 +1,EP339061B02,EP339061B02,NYU_BMS_Melanoma_13059_P3,P19,iTru7_401_04,ACGACAGA,iTru5_108_G,AGCCTATC,NYU_BMS_Melanoma_13059,pool1,EP339061B02 +1,SP681591A04,SP681591A04,NYU_BMS_Melanoma_13059_P3,B21,iTru7_401_05,TTACGGCT,iTru5_109_G,AGGAACAC,NYU_BMS_Melanoma_13059,pool2,SP681591A04 +1,EP393712B02,EP393712B02,NYU_BMS_Melanoma_13059_P3,D21,iTru7_401_06,GAGGACTT,iTru5_110_G,AGGTCTGT,NYU_BMS_Melanoma_13059,pool1,EP393712B02 +1,EP410041B01,EP410041B01,NYU_BMS_Melanoma_13059_P3,F21,iTru7_401_07,GGCATACT,iTru5_111_G,AGTATGCC,NYU_BMS_Melanoma_13059,pool2,EP410041B01 +1,SP453872A01,SP453872A01,NYU_BMS_Melanoma_13059_P3,H21,iTru7_401_08,CGTAGGTT,iTru5_112_G,AGTTCGCA,NYU_BMS_Melanoma_13059,pool1,SP453872A01 +1,22_001_710_503_791_00,22.001.710.503.791.00,NYU_BMS_Melanoma_13059_P3,J21,iTru7_401_09,ATATGCGC,iTru5_101_H,TGGAAGCA,NYU_BMS_Melanoma_13059,pool2,22_001_710_503_791_00 +1,LP128540A01,LP128540A01,NYU_BMS_Melanoma_13059_P3,L21,iTru7_401_10,GGATGTAG,iTru5_102_H,GTCAGTCA,NYU_BMS_Melanoma_13059,pool1,LP128540A01 +1,EP339053B02,EP339053B02,NYU_BMS_Melanoma_13059_P3,N21,iTru7_401_11,CCTGTCAT,iTru5_103_H,GTAACCGA,NYU_BMS_Melanoma_13059,pool2,EP339053B02 +1,EP617443B01,EP617443B01,NYU_BMS_Melanoma_13059_P3,P21,iTru7_401_12,TGCTCATG,iTru5_104_H,GTTATGGC,NYU_BMS_Melanoma_13059,pool1,EP617443B01 +1,EP190307B01,EP190307B01,NYU_BMS_Melanoma_13059_P3,B23,iTru7_402_01,TGAAGACG,iTru5_105_H,GTAAGCAC,NYU_BMS_Melanoma_13059,pool2,EP190307B01 +1,AP795068B04,AP795068B04,NYU_BMS_Melanoma_13059_P3,D23,iTru7_402_02,GTTACGCA,iTru5_106_H,GGAATGTC,NYU_BMS_Melanoma_13059,pool1,AP795068B04 +1,LP128541A01,LP128541A01,NYU_BMS_Melanoma_13059_P3,F23,iTru7_402_03,ACTCAGAC,iTru5_107_H,GAGAAGGT,NYU_BMS_Melanoma_13059,pool2,LP128541A01 +1,EP584756B04,EP584756B04,NYU_BMS_Melanoma_13059_P3,H23,iTru7_402_04,GTCCACAT,iTru5_108_H,GAGTAGAG,NYU_BMS_Melanoma_13059,pool1,EP584756B04 +1,SP284096A02,SP284096A02,NYU_BMS_Melanoma_13059_P3,J23,iTru7_402_05,CGCTAGTA,iTru5_109_H,GCATTGGT,NYU_BMS_Melanoma_13059,pool2,SP284096A02 +1,EP431562B04,EP431562B04,NYU_BMS_Melanoma_13059_P3,L23,iTru7_402_06,GAATCCGA,iTru5_110_H,TCCAGCAA,NYU_BMS_Melanoma_13059,pool1,EP431562B04 +1,EP685640B01,EP685640B01,NYU_BMS_Melanoma_13059_P3,N23,iTru7_402_07,GAGACGAT,iTru5_111_H,GAATCCGT,NYU_BMS_Melanoma_13059,pool2,EP685640B01 +1,EP339059B02,EP339059B02,NYU_BMS_Melanoma_13059_P3,P23,iTru7_402_08,TAAGTGGC,iTru5_112_H,TACATCGG,NYU_BMS_Melanoma_13059,pool1,EP339059B02 +1,EP431575B01,EP431575B01,NYU_BMS_Melanoma_13059_P4,B2,iTru7_402_09,ACTGAGGT,iTru5_113_A,ATAACGCC,NYU_BMS_Melanoma_13059,pool2,EP431575B01 +1,EP379938B01,EP379938B01,NYU_BMS_Melanoma_13059_P4,D2,iTru7_402_10,TGTACCGT,iTru5_114_A,ATGACAGG,NYU_BMS_Melanoma_13059,pool1,EP379938B01 +1,EP529635B02,EP529635B02,NYU_BMS_Melanoma_13059_P4,F2,iTru7_402_11,AGCAAGCA,iTru5_115_A,CAACACAG,NYU_BMS_Melanoma_13059,pool2,EP529635B02 +1,EP554506B04,EP554506B04,NYU_BMS_Melanoma_13059_P4,H2,iTru7_402_12,TCTCGTGT,iTru5_116_A,CACCAGTT,NYU_BMS_Melanoma_13059,pool1,EP554506B04 +1,EP455757B04,EP455757B04,NYU_BMS_Melanoma_13059_P4,J2,iTru7_115_01,CAAGGTCT,iTru5_117_A,CAGAGTGA,NYU_BMS_Melanoma_13059,pool2,EP455757B04 +1,SP491900A02,SP491900A02,NYU_BMS_Melanoma_13059_P4,L2,iTru7_115_02,TAGACGTG,iTru5_118_A,CCGATGTA,NYU_BMS_Melanoma_13059,pool1,SP491900A02 +1,LP196272A01,LP196272A01,NYU_BMS_Melanoma_13059_P4,N2,iTru7_115_03,TGAGCTAG,iTru5_119_A,CCTTCCAT,NYU_BMS_Melanoma_13059,pool2,LP196272A01 +1,SP704319A04,SP704319A04,NYU_BMS_Melanoma_13059_P4,P2,iTru7_115_04,CTGACACA,iTru5_120_A,CGGTAATC,NYU_BMS_Melanoma_13059,pool1,SP704319A04 +1,EP617441B01,EP617441B01,NYU_BMS_Melanoma_13059_P4,B4,iTru7_115_05,ACGGTCTT,iTru5_121_A,CTAGGTTG,NYU_BMS_Melanoma_13059,pool2,EP617441B01 +1,AP687591B04,AP687591B04,NYU_BMS_Melanoma_13059_P4,D4,iTru7_115_06,GCTGTTGT,iTru5_122_A,CTCGGTAA,NYU_BMS_Melanoma_13059,pool1,AP687591B04 +1,SP640978A02,SP640978A02,NYU_BMS_Melanoma_13059_P4,F4,iTru7_115_07,CACTAGCT,iTru5_123_A,CTGTGGTA,NYU_BMS_Melanoma_13059,pool2,SP640978A02 +1,EP981129A02,EP981129A02,NYU_BMS_Melanoma_13059_P4,H4,iTru7_115_08,TGGTACAG,iTru5_124_A,GTACGATC,NYU_BMS_Melanoma_13059,pool1,EP981129A02 +1,EP455763B04,EP455763B04,NYU_BMS_Melanoma_13059_P4,J4,iTru7_115_09,AGCACTTC,iTru5_113_B,TCTGTCGT,NYU_BMS_Melanoma_13059,pool2,EP455763B04 +1,EP339057B02,EP339057B02,NYU_BMS_Melanoma_13059_P4,L4,iTru7_115_10,GCATACAG,iTru5_114_B,GAATGGCA,NYU_BMS_Melanoma_13059,pool1,EP339057B02 +1,SP491897A02,SP491897A02,NYU_BMS_Melanoma_13059_P4,N4,iTru7_115_11,CTTAGGAC,iTru5_115_B,GTGTGTTC,NYU_BMS_Melanoma_13059,pool2,SP491897A02 +1,EP980752B04,EP980752B04,NYU_BMS_Melanoma_13059_P4,P4,iTru7_211_01,GCTTCTTG,iTru5_116_B,GGTTGAAC,NYU_BMS_Melanoma_13059,pool1,EP980752B04 +1,LP128539A01,LP128539A01,NYU_BMS_Melanoma_13059_P4,B6,iTru7_101_01,ACGTTACC,iTru5_117_B,GGCTCAAT,NYU_BMS_Melanoma_13059,pool2,LP128539A01 +1,EP996831B04,EP996831B04,NYU_BMS_Melanoma_13059_P4,D6,iTru7_101_02,CTGTGTTG,iTru5_118_B,TTCGCCAT,NYU_BMS_Melanoma_13059,pool1,EP996831B04 +1,EP273332B04,EP273332B04,NYU_BMS_Melanoma_13059_P4,F6,iTru7_101_03,TGAGGTGT,iTru5_119_B,GTCCTTGA,NYU_BMS_Melanoma_13059,pool2,EP273332B04 +1,EP483291B04,EP483291B04,NYU_BMS_Melanoma_13059_P4,H6,iTru7_101_04,GATCCATG,iTru5_120_B,TAACGTCG,NYU_BMS_Melanoma_13059,pool1,EP483291B04 +1,EP393715B01,EP393715B01,NYU_BMS_Melanoma_13059_P4,J6,iTru7_101_05,GCCTATCA,iTru5_121_B,GAGACCAA,NYU_BMS_Melanoma_13059,pool2,EP393715B01 +1,EP617440B01,EP617440B01,NYU_BMS_Melanoma_13059_P4,L6,iTru7_101_06,AACAACCG,iTru5_122_B,GATCAAGG,NYU_BMS_Melanoma_13059,pool1,EP617440B01 +1,EP729434A01,EP729434A01,NYU_BMS_Melanoma_13059_P4,N6,iTru7_101_07,ACTCGTTG,iTru5_123_B,GCAACCAT,NYU_BMS_Melanoma_13059,pool2,EP729434A01 +1,SP645141A03,SP645141A03,NYU_BMS_Melanoma_13059_P4,P6,iTru7_101_08,CCTATGGT,iTru5_124_B,AAGGAGAC,NYU_BMS_Melanoma_13059,pool1,SP645141A03 +1,BLANK4_4A,BLANK4.4A,NYU_BMS_Melanoma_13059_P4,B8,iTru7_101_09,TGTACACC,iTru5_113_C,ATCGGAGA,NYU_BMS_Melanoma_13059,pool2,BLANK4.4A +1,BLANK4_4B,BLANK4.4B,NYU_BMS_Melanoma_13059_P4,D8,iTru7_101_10,GTATGCTG,iTru5_114_C,ATGCGCTT,NYU_BMS_Melanoma_13059,pool1,BLANK4.4B +1,BLANK4_4C,BLANK4.4C,NYU_BMS_Melanoma_13059_P4,F8,iTru7_101_11,TGATGTCC,iTru5_115_C,CAACCGTA,NYU_BMS_Melanoma_13059,pool2,BLANK4.4C +1,BLANK4_4D,BLANK4.4D,NYU_BMS_Melanoma_13059_P4,H8,iTru7_101_12,GTCCTTCT,iTru5_116_C,CACTTCAC,NYU_BMS_Melanoma_13059,pool1,BLANK4.4D +1,BLANK4_4E,BLANK4.4E,NYU_BMS_Melanoma_13059_P4,J8,iTru7_102_01,ATAAGGCG,iTru5_117_C,CAGCTAGA,NYU_BMS_Melanoma_13059,pool2,BLANK4.4E +1,BLANK4_4F,BLANK4.4F,NYU_BMS_Melanoma_13059_P4,L8,iTru7_102_02,CTTACCTG,iTru5_118_C,CCGTTATG,NYU_BMS_Melanoma_13059,pool1,BLANK4.4F +1,BLANK4_4G,BLANK4.4G,NYU_BMS_Melanoma_13059_P4,N8,iTru7_102_03,CGTTGCAA,iTru5_119_C,CGAACAAC,NYU_BMS_Melanoma_13059,pool2,BLANK4.4G +1,BLANK4_4H,BLANK4.4H,NYU_BMS_Melanoma_13059_P4,P8,iTru7_102_04,GATTCAGC,iTru5_120_C,CGTAGATG,NYU_BMS_Melanoma_13059,pool1,BLANK4.4H +1,SP232114A04,SP232114A04,NYU_BMS_Melanoma_13059_P4,B10,iTru7_102_05,TCACGTTC,iTru5_121_C,CTATGCCT,NYU_BMS_Melanoma_13059,pool2,SP232114A04 +1,EP393714B01,EP393714B01,NYU_BMS_Melanoma_13059_P4,D10,iTru7_102_06,TGTGCGTT,iTru5_122_C,CTGATGAG,NYU_BMS_Melanoma_13059,pool1,EP393714B01 +1,EP533388B01,EP533388B01,NYU_BMS_Melanoma_13059_P4,F10,iTru7_102_07,TAGTTGCG,iTru5_123_C,CTTCCTTC,NYU_BMS_Melanoma_13059,pool2,EP533388B01 +1,EP724905B01,EP724905B01,NYU_BMS_Melanoma_13059_P4,H10,iTru7_102_08,AAGAGCCA,iTru5_124_C,GTCTCATC,NYU_BMS_Melanoma_13059,pool1,EP724905B01 +1,EP282108B01,EP282108B01,NYU_BMS_Melanoma_13059_P4,J10,iTru7_102_09,ACAGCTCA,iTru5_113_D,GCGCATAT,NYU_BMS_Melanoma_13059,pool2,EP282108B01 +1,EP282107B01,EP282107B01,NYU_BMS_Melanoma_13059_P4,L10,iTru7_102_10,GTTAAGGC,iTru5_114_D,GAAGATCC,NYU_BMS_Melanoma_13059,pool1,EP282107B01 +1,EP001625B01,EP001625B01,NYU_BMS_Melanoma_13059_P4,N10,iTru7_102_11,AAGCCACA,iTru5_115_D,GTTGGCAT,NYU_BMS_Melanoma_13059,pool2,EP001625B01 +1,EP073209B02,EP073209B02,NYU_BMS_Melanoma_13059_P4,P10,iTru7_102_12,ACACGGTT,iTru5_116_D,GTGAATGG,NYU_BMS_Melanoma_13059,pool1,EP073209B02 +1,SP232079A01,SP232079A01,NYU_BMS_Melanoma_13059_P4,B12,iTru7_103_01,CAGCGATT,iTru5_117_D,GTATCGAG,NYU_BMS_Melanoma_13059,pool2,SP232079A01 +1,EP772145A02,EP772145A02,NYU_BMS_Melanoma_13059_P4,D12,iTru7_103_02,TAGTGACC,iTru5_118_D,TGCAAGAC,NYU_BMS_Melanoma_13059,pool1,EP772145A02 +1,AP771472A04,AP771472A04,NYU_BMS_Melanoma_13059_P4,F12,iTru7_103_03,CGAGACTA,iTru5_119_D,GAGTGTGT,NYU_BMS_Melanoma_13059,pool2,AP771472A04 +1,AP223470B01,AP223470B01,NYU_BMS_Melanoma_13059_P4,H12,iTru7_103_04,GACATGGT,iTru5_120_D,TAAGCGCA,NYU_BMS_Melanoma_13059,pool1,AP223470B01 +1,SP404412A02,SP404412A02,NYU_BMS_Melanoma_13059_P4,J12,iTru7_103_05,GCATGTCT,iTru5_121_D,TAGCAGGA,NYU_BMS_Melanoma_13059,pool2,SP404412A02 +1,EP772143A02,EP772143A02,NYU_BMS_Melanoma_13059_P4,L12,iTru7_103_06,ACTCCATC,iTru5_122_D,GACTACGA,NYU_BMS_Melanoma_13059,pool1,EP772143A02 +1,SP408629A01,SP408629A01,NYU_BMS_Melanoma_13059_P4,N12,iTru7_103_07,TGTGACTG,iTru5_123_D,GACGTCAT,NYU_BMS_Melanoma_13059,pool2,SP408629A01 +1,EP749735A07,EP749735A07,NYU_BMS_Melanoma_13059_P4,P12,iTru7_103_08,CGAAGAAC,iTru5_124_D,AAGAGGCA,NYU_BMS_Melanoma_13059,pool1,EP749735A07 +1,EP846485A01,EP846485A01,NYU_BMS_Melanoma_13059_P4,B14,iTru7_103_09,GGTGTCTT,iTru5_113_E,ATCGTCTC,NYU_BMS_Melanoma_13059,pool2,EP846485A01 +1,EP808109A01,EP808109A01,NYU_BMS_Melanoma_13059_P4,D14,iTru7_103_10,AAGAAGGC,iTru5_114_E,ATGGCGAT,NYU_BMS_Melanoma_13059,pool1,EP808109A01 +1,SP416130A04,SP416130A04,NYU_BMS_Melanoma_13059_P4,F14,iTru7_103_11,AGGTTCGA,iTru5_115_E,CAAGAAGC,NYU_BMS_Melanoma_13059,pool2,SP416130A04 +1,EP882752A01,EP882752A01,NYU_BMS_Melanoma_13059_P4,H14,iTru7_103_12,CATGTTCC,iTru5_116_E,CAGAACTG,NYU_BMS_Melanoma_13059,pool1,EP882752A01 +1,AP953594A02,AP953594A02,NYU_BMS_Melanoma_13059_P4,J14,iTru7_104_01,GTGCCATA,iTru5_117_E,CAGGTAAG,NYU_BMS_Melanoma_13059,pool2,AP953594A02 +1,AP046324B02,AP046324B02,NYU_BMS_Melanoma_13059_P4,L14,iTru7_104_02,CCTTGTAG,iTru5_118_E,CCTACCTA,NYU_BMS_Melanoma_13059,pool1,AP046324B02 +1,AP891020A04,AP891020A04,NYU_BMS_Melanoma_13059_P4,N14,iTru7_104_03,GCTGGATT,iTru5_119_E,CGAAGTCA,NYU_BMS_Melanoma_13059,pool2,AP891020A04 +1,EP790023A01,EP790023A01,NYU_BMS_Melanoma_13059_P4,P14,iTru7_104_04,TAACGAGG,iTru5_120_E,CGTCTTCA,NYU_BMS_Melanoma_13059,pool1,EP790023A01 +1,EP657386A01,EP657386A01,NYU_BMS_Melanoma_13059_P4,B16,iTru7_104_05,ATGGTTGC,iTru5_121_E,CTCAAGCT,NYU_BMS_Melanoma_13059,pool2,EP657386A01 +1,EP805337A01,EP805337A01,NYU_BMS_Melanoma_13059_P4,D16,iTru7_104_06,CCTATACC,iTru5_122_E,CTGCCATA,NYU_BMS_Melanoma_13059,pool1,EP805337A01 +1,EP927458A04,EP927458A04,NYU_BMS_Melanoma_13059_P4,F16,iTru7_104_07,TTAGGTCG,iTru5_123_E,CTTGCTAG,NYU_BMS_Melanoma_13059,pool2,EP927458A04 +1,AP173299B04,AP173299B04,NYU_BMS_Melanoma_13059_P4,H16,iTru7_104_08,GCAAGATC,iTru5_124_E,GTCTGCAA,NYU_BMS_Melanoma_13059,pool1,AP173299B04 +1,EP768164A02,EP768164A02,NYU_BMS_Melanoma_13059_P4,J16,iTru7_104_09,AGAGCCTT,iTru5_113_F,GCTACTCT,NYU_BMS_Melanoma_13059,pool2,EP768164A02 +1,EP886422A01,EP886422A01,NYU_BMS_Melanoma_13059_P4,L16,iTru7_104_10,GCAATGGA,iTru5_114_F,TACAGAGC,NYU_BMS_Melanoma_13059,pool1,EP886422A01 +1,AP103463B01,AP103463B01,NYU_BMS_Melanoma_13059_P4,N16,iTru7_104_11,CTGGAGTA,iTru5_115_F,GGTCGTAT,NYU_BMS_Melanoma_13059,pool2,AP103463B01 +1,AP744361A02,AP744361A02,NYU_BMS_Melanoma_13059_P4,P16,iTru7_104_12,GAACATCG,iTru5_116_F,GTCGTTAC,NYU_BMS_Melanoma_13059,pool1,AP744361A02 +1,AP065292B01,AP065292B01,NYU_BMS_Melanoma_13059_P4,B18,iTru7_105_01,GCACAACT,iTru5_117_F,TTCACGGA,NYU_BMS_Melanoma_13059,pool2,AP065292B01 +1,SP257517A04,SP257517A04,NYU_BMS_Melanoma_13059_P4,D18,iTru7_105_02,TTCTCTCG,iTru5_118_F,TGCTTGCT,NYU_BMS_Melanoma_13059,pool1,SP257517A04 +1,EP790021A04,EP790021A04,NYU_BMS_Melanoma_13059_P4,F18,iTru7_105_03,AACGGTCA,iTru5_119_F,TCTTACGG,NYU_BMS_Melanoma_13059,pool2,EP790021A04 +1,EP675075A04,EP675075A04,NYU_BMS_Melanoma_13059_P4,H18,iTru7_105_04,ACAGACCT,iTru5_120_F,TCCTCATG,NYU_BMS_Melanoma_13059,pool1,EP675075A04 +1,SP388683A02,SP388683A02,NYU_BMS_Melanoma_13059_P4,J18,iTru7_105_05,TCTCTTCC,iTru5_121_F,GATGTCGA,NYU_BMS_Melanoma_13059,pool2,SP388683A02 +1,SP232309A01,SP232309A01,NYU_BMS_Melanoma_13059_P4,L18,iTru7_105_06,AGTGTTGG,iTru5_122_F,GAAGTGCT,NYU_BMS_Melanoma_13059,pool1,SP232309A01 +1,EP899038A04,EP899038A04,NYU_BMS_Melanoma_13059_P4,N18,iTru7_105_07,TGGCATGT,iTru5_123_F,TCACTCGA,NYU_BMS_Melanoma_13059,pool2,EP899038A04 +1,EP636802A01,EP636802A01,NYU_BMS_Melanoma_13059_P4,P18,iTru7_105_08,AGAAGCGT,iTru5_124_F,ACGCAGTA,NYU_BMS_Melanoma_13059,pool1,EP636802A01 +1,AP046327B02,AP046327B02,NYU_BMS_Melanoma_13059_P4,B20,iTru7_105_09,AGCGGAAT,iTru5_113_G,ATCTCCTG,NYU_BMS_Melanoma_13059,pool2,AP046327B02 +1,EP905975A04,EP905975A04,NYU_BMS_Melanoma_13059_P4,D20,iTru7_105_10,TAACCGGT,iTru5_114_G,ATGTGGAC,NYU_BMS_Melanoma_13059,pool1,EP905975A04 +1,SP410796A02,SP410796A02,NYU_BMS_Melanoma_13059_P4,F20,iTru7_105_11,CATGGAAC,iTru5_115_G,CAAGCCAA,NYU_BMS_Melanoma_13059,pool2,SP410796A02 +1,EP784608A01,EP784608A01,NYU_BMS_Melanoma_13059_P4,H20,iTru7_105_12,ATGGTCCA,iTru5_116_G,CAGACGTT,NYU_BMS_Melanoma_13059,pool1,EP784608A01 +1,EP808105A01,EP808105A01,NYU_BMS_Melanoma_13059_P4,J20,iTru7_106_01,CTTCTGAG,iTru5_117_G,CATACTCG,NYU_BMS_Melanoma_13059,pool2,EP808105A01 +1,SP331134A04,SP331134A04,NYU_BMS_Melanoma_13059_P4,L20,iTru7_106_02,AACCGAAG,iTru5_118_G,CCTGTCAA,NYU_BMS_Melanoma_13059,pool1,SP331134A04 +1,EP718688A01,EP718688A01,NYU_BMS_Melanoma_13059_P4,N20,iTru7_106_03,TTCGTACC,iTru5_119_G,CGAGTTAG,NYU_BMS_Melanoma_13059,pool2,EP718688A01 +1,SP232270A02,SP232270A02,NYU_BMS_Melanoma_13059_P4,P20,iTru7_106_04,CTGTTAGG,iTru5_120_G,CTAACCTG,NYU_BMS_Melanoma_13059,pool1,SP232270A02 +1,EP970001A01,EP970001A01,NYU_BMS_Melanoma_13059_P4,B22,iTru7_106_05,CACAAGTC,iTru5_121_G,CTCCTAGT,NYU_BMS_Melanoma_13059,pool2,EP970001A01 +1,EP001624B01,EP001624B01,NYU_BMS_Melanoma_13059_P4,D22,iTru7_106_06,TCTTGACG,iTru5_122_G,CTGTACCA,NYU_BMS_Melanoma_13059,pool1,EP001624B01 +1,EP868682A01,EP868682A01,NYU_BMS_Melanoma_13059_P4,F22,iTru7_106_07,CGTCTTGT,iTru5_123_G,GCTACAAC,NYU_BMS_Melanoma_13059,pool2,EP868682A01 +1,EP927462A02,EP927462A02,NYU_BMS_Melanoma_13059_P4,H22,iTru7_106_08,CGTGATCA,iTru5_124_G,GTTCTTCG,NYU_BMS_Melanoma_13059,pool1,EP927462A02 +1,C3,C3,NYU_BMS_Melanoma_13059_P4,J22,iTru7_106_09,CCAAGTTG,iTru5_113_H,GAGAGTAC,NYU_BMS_Melanoma_13059,pool2,C3 +1,EP890158A02,EP890158A02,NYU_BMS_Melanoma_13059_P4,L22,iTru7_106_10,GTACCTTG,iTru5_114_H,GACACAGT,NYU_BMS_Melanoma_13059,pool1,EP890158A02 +1,EP023801B04,EP023801B04,NYU_BMS_Melanoma_13059_P4,N22,iTru7_106_11,GACTATGC,iTru5_115_H,TTGCTTGG,NYU_BMS_Melanoma_13059,pool2,EP023801B04 +1,EP400447B04,EP400447B04,NYU_BMS_Melanoma_13059_P4,P22,iTru7_106_12,TGGATCAC,iTru5_116_H,GTAGTACC,NYU_BMS_Melanoma_13059,pool1,EP400447B04 +1,EP385379B01,EP385379B01,NYU_BMS_Melanoma_13059_P4,B24,iTru7_107_01,CTCTGGTT,iTru5_117_H,TTCGGCTA,NYU_BMS_Melanoma_13059,pool2,EP385379B01 +1,EP385387B01,EP385387B01,NYU_BMS_Melanoma_13059_P4,D24,iTru7_107_02,GTTCATGG,iTru5_118_H,TGCACTTG,NYU_BMS_Melanoma_13059,pool1,EP385387B01 +1,EP385384B01,EP385384B01,NYU_BMS_Melanoma_13059_P4,F24,iTru7_107_03,GCTGTAAG,iTru5_119_H,TAGAACGC,NYU_BMS_Melanoma_13059,pool2,EP385384B01 +1,SP754514A04,SP754514A04,NYU_BMS_Melanoma_13059_P4,H24,iTru7_107_04,GTCGAAGA,iTru5_120_H,GATTGTCC,NYU_BMS_Melanoma_13059,pool1,SP754514A04 +1,SP415025A01,SP415025A01,NYU_BMS_Melanoma_13059_P4,J24,iTru7_107_05,GAGCTCAA,iTru5_121_H,GATGCTAC,NYU_BMS_Melanoma_13059,pool2,SP415025A01 +1,SP415023A02,SP415023A02,NYU_BMS_Melanoma_13059_P4,L24,iTru7_107_06,TGAACCTG,iTru5_122_H,GAACGGTT,NYU_BMS_Melanoma_13059,pool1,SP415023A02 +1,EP479894B04,EP479894B04,NYU_BMS_Melanoma_13059_P4,N24,iTru7_107_07,CCGACTAT,iTru5_123_H,CTCTTGTC,NYU_BMS_Melanoma_13059,pool2EP479894B04 +1,EP479894B04,EP479894B04,NYU_BMS_Melanoma_13059_P4,P24,iTru7_107_08,AGCTAACC,iTru5_124_H,AACGCCTT,NYU_BMS_Melanoma_13059,pool1,EP479894B04 +,,,,,,,,,,, +[Bioinformatics],,,,,,,,,,, +Sample_Project,QiitaID,BarcodesAreRC,ForwardAdapter,ReverseAdapter,HumanFiltering,library_construction_protocol,experiment_design_description,,,, +NYU_BMS_Melanoma_13059,13059,False,AACC,GGTT,False,Nextera,Equipment,,,, +Feist_11661,11661,False,AACC,GGTT,False,Nextera,Equipment,,,, +Gerwick_6123,6123,False,AACC,GGTT,True,Nextera,Equipment,,,, +,,,,,,,,,,, +[Contact],,,,,,,,,,, +Email,Sample_Project,,,,,,,,,, +test@lol.com,Feist_11661,,,,,,,,,, +,,,,,,,,,,, diff --git a/tests/data/fake_sample_index_list.txt b/tests/data/fake_sample_index_list.txt new file mode 100644 index 00000000..1c4345ef --- /dev/null +++ b/tests/data/fake_sample_index_list.txt @@ -0,0 +1,96 @@ +CCCCCACCAA C501 NONE PE +AACCCCCACA C502 NONE PE +CCAACACACC C503 NONE PE +AACACCCCCA C504 NONE PE +CAAAACCCCC C505 NONE PE +ACACACCACC C506 NONE PE +AACCCACACC C507 NONE PE +CAAAAAAAAA C508 NONE PE +AAACCACCCC C509 NONE PE +ACACCCCCCC C510 NONE PE +AAACACCACA C511 NONE PE +CAAAACCCCA C512 NONE PE +ACCCCAACCC C513 NONE PE +CAACCAACAC C514 NONE PE +CCCCCACCCA C515 NONE PE +CCAACCCCCA C516 NONE PE +CAAAACACCC C517 NONE PE +ACACACCAAA C518 NONE PE +CCACCAAAAA C519 NONE PE +AAACCCCCCC C520 NONE PE +AACAACCCCA C521 NONE PE +CAACAACAAC C522 NONE PE +CACCACCAAA C523 NONE PE +CACAACAAAC C524 NONE PE +AACACCCACC C525 NONE PE +CAAAACACAA C526 NONE PE +AAAAAAAAAA C527 NONE PE +CCAACCCCCA C528 NONE PE +CAACCCCAAA C529 NONE PE +ACCCAACCCA C530 NONE PE +CACACCAAAC C531 NONE PE +CAACAAAAAC C532 NONE PE +CCAAAAAAAC C533 NONE PE +ACCAACACAC C534 NONE PE +CCAAAACACC C535 NONE PE +CACCCAAACC C536 NONE PE +CAAACCAAAC C537 NONE PE +CACAAACACA C538 NONE PE +ACCCACCCCC C539 NONE PE +AACCACACAC C540 NONE PE +CACCCCCACA C541 NONE PE +CACAACCACC C542 NONE PE +AAAAACAAAA C543 NONE PE +CCACACAAAC C544 NONE PE +AAACAAACAC C545 NONE PE +ACCCCCACCC C546 NONE PE +ACACCCCAAA C547 NONE PE +CAAACCAAAC C548 NONE PE +AAACCACCAA C549 NONE PE +CAACCAAAAC C550 NONE PE +ACACCCCCCC C551 NONE PE +CACCCACCAC C552 NONE PE +ACCCCAACCC C553 NONE PE +AAACCCAACA C554 NONE PE +ACCACACAAA C555 NONE PE +ACCCACCACC C556 NONE PE +CCCCAACCAA C557 NONE PE +CAAAAACACC C558 NONE PE +ACCACAAAAC C559 NONE PE +ACCCCCCCAA C560 NONE PE +CCACAAAACA C561 NONE PE +CAAACCCACC C562 NONE PE +ACACCACAAA C563 NONE PE +ACCAACAAAA C564 NONE PE +CCCAACAAAA C565 NONE PE +CACCCCCCCA C566 NONE PE +AAACCCACCA C567 NONE PE +CACACCACAA C568 NONE PE +CCAAACCCCA C569 NONE PE +CACCCCACCC C570 NONE PE +AAACCCCCAA C571 NONE PE +ACACCACACC C572 NONE PE +ACAAAACACC C573 NONE PE +CACAAACCAC C574 NONE PE +ACCCCCACAA C575 NONE PE +CCCCAAACCC C576 NONE PE +AAAACACAAC C577 NONE PE +AACCCAACCA C578 NONE PE +AAACACACAC C579 NONE PE +AAACACCACC C580 NONE PE +AACCCCAACA C581 NONE PE +CCACCCAAAC C582 NONE PE +CCAAAACAAC C583 NONE PE +ACCAACAAAC C584 NONE PE +AAACACCACC C585 NONE PE +AACCACACAC C586 NONE PE +CACAACAAAA C587 NONE PE +AACCAAAAAC C588 NONE PE +ACCAAACCAA C589 NONE PE +ACAAACACAC C590 NONE PE +ACCACACCAA C591 NONE PE +AAAAACAACC C592 NONE PE +CACACAACAC C593 NONE PE +CCCCCAACCC C594 NONE PE +ACACAAAACC C595 NONE PE +CCACCACACC C596 NONE PE diff --git a/tests/data/files_to_count.txt b/tests/data/files_to_count.txt new file mode 100644 index 00000000..8d7ce4b1 --- /dev/null +++ b/tests/data/files_to_count.txt @@ -0,0 +1,8 @@ +/ddn_scratch/qiita_t/working_dir/8edbdee2-da52-4278-af40-267185bbcd7e/TellReadJob/Full/TellReadJob_I1_C519.fastq.gz.corrected.err_barcode_removed.fastq +/ddn_scratch/qiita_t/working_dir/8edbdee2-da52-4278-af40-267185bbcd7e/TellReadJob/Full/TellReadJob_I1_C519.fastq.gz.erroneous.fastq +/ddn_scratch/qiita_t/working_dir/8edbdee2-da52-4278-af40-267185bbcd7e/TellReadJob/Full/TellReadJob_I1_C520.fastq.gz.corrected.err_barcode_removed.fastq +/ddn_scratch/qiita_t/working_dir/8edbdee2-da52-4278-af40-267185bbcd7e/TellReadJob/Full/TellReadJob_I1_C520.fastq.gz.erroneous.fastq +/ddn_scratch/qiita_t/working_dir/8edbdee2-da52-4278-af40-267185bbcd7e/TellReadJob/Full/TellReadJob_R1_C519.fastq.gz.corrected.err_barcode_removed.fastq +/ddn_scratch/qiita_t/working_dir/8edbdee2-da52-4278-af40-267185bbcd7e/TellReadJob/Full/TellReadJob_R1_C520.fastq.gz.corrected.err_barcode_removed.fastq +/ddn_scratch/qiita_t/working_dir/8edbdee2-da52-4278-af40-267185bbcd7e/TellReadJob/Full/TellReadJob_R2_C519.fastq.gz.corrected.err_barcode_removed.fastq +/ddn_scratch/qiita_t/working_dir/8edbdee2-da52-4278-af40-267185bbcd7e/TellReadJob/Full/TellReadJob_R2_C520.fastq.gz.corrected.err_barcode_removed.fastq diff --git a/tests/data/good-mapping-file.txt b/tests/data/good-mapping-file.txt new file mode 100644 index 00000000..5a603867 --- /dev/null +++ b/tests/data/good-mapping-file.txt @@ -0,0 +1,385 @@ +Sample_Name BARCODE center_name center_project_name experiment_design_description extraction_robot extractionkit_lot instrument_model library_construction_protocol linker mastermix_lot orig_name pcr_primers platform plating primer primer_date primer_plate processing_robot project_name qiita_prep_id run_center run_date run_prefix runid sample_plate sequencing_meth target_gene target_subfragment tm1000_8_tool tm300_8_tool tm50_8_tool water_lot well_description well_id_96 well_id_384 tm10_8_tool +11.1.21.RK.FH TATGCCAGAGAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.1.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.1.21.RK.FH_C4 C4 +11.1.21.RK.LH ATCTAGTGGCAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.1.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.1.21.RK.LH_D4 D4 +11.1.21.RK.RH TTCCTTAGTAGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.1.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.1.21.RK.RH_B4 B4 +11.10.21.RK.FH GTGGAGTCTCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.10.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.10.21.RK.FH_D1 D1 +11.10.21.RK.LH TGATGTGCTAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.10.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.10.21.RK.LH_E1 E1 +11.10.21.RK.RH TGACTAATGGCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.10.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.10.21.RK.RH_C1 C1 +11.12.21.RK.FH GTAGTAGACCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.12.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.12.21.RK.FH_E2 E2 +11.12.21.RK.LH CCGGACAAGAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.12.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.12.21.RK.LH_F2 F2 +11.12.21.RK.RH ACCTTACACCTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.12.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.12.21.RK.RH_D2 D2 +11.13.21.RK.FH CGCGCCTTAAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.13.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.13.21.RK.FH_A5 A5 +11.13.21.RK.LH CGTCCGTATGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.13.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.13.21.RK.LH_B5 B5 +11.13.21.RK.RH GACTCTGCTCAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.13.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.13.21.RK.RH_H4 H4 +11.17.21.RK.FH TCCATACCGGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.17.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.17.21.RK.FH_A2 A2 +11.17.21.RK.LH ATGCTGCAACAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.17.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.17.21.RK.LH_B2 B2 +11.17.21.RK.RH CGGGACACCCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.17.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.17.21.RK.RH_C2 C2 +11.2.21.RK.FH TGTGCACGCCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.2.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.2.21.RK.FH_F1 F1 +11.2.21.RK.LH CTATGTATTAGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.2.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.2.21.RK.LH_H1 H1 +11.2.21.RK.RH GGTGAGCAAGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.2.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.2.21.RK.RH_G1 G1 +11.3.21.RK.FH TAAATATACCCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.3.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.3.21.RK.FH_G2 G2 +11.3.21.RK.LH ACTCCCGTGTGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.3.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.3.21.RK.LH_H2 H2 +11.3.21.RK.RH CCTAACGGTCCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.3.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.3.21.RK.RH_A4 A4 +11.4.21.RK.FH CTCGCCCTCGCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.4.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.4.21.RK.FH_E4 E4 +11.4.21.RK.LH TACTAACGCGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.4.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.4.21.RK.LH_F4 F4 +11.4.21.RK.RH GTCGTCCAAATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.4.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.4.21.RK.RH_G4 G4 +11.5.21.RK.FH GTCATGCTCCAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.5.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.5.21.RK.FH_H5 H5 +11.5.21.RK.LH GCGATCACACCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.5.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.5.21.RK.LH_F5 F5 +11.5.21.RK.RH TGCACAGTCGCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.5.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.5.21.RK.RH_G5 G5 +11.6.21.RK.FH TATGGTACCCAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.6.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.6.21.RK.FH_A6 A6 +11.6.21.RK.LH ACGTGAGGAACG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.6.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.6.21.RK.LH_B6 B6 +11.6.21.RK.RH AAGAACTCATGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.6.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.6.21.RK.RH_C6 C6 +11.7.21.RK.FH ACGCTTAACGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.7.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.7.21.RK.FH_D5 D5 +11.7.21.RK.LH CGTTTGGAATGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.7.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.7.21.RK.LH_C5 C5 +11.7.21.RK.RH TCTCTTTCGACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.7.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.7.21.RK.RH_E5 E5 +11.8.21.RK.FH AGCCTTCGTCGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.8.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.8.21.RK.FH_A1 A1 +11.8.21.RK.LH CGTATAAATGCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.8.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.8.21.RK.LH_B1 B1 +5.1.22.RK.FH CAAATTCGGGAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V72 GT 1331807 5.1.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.1.22.RK.FH_A4 A4 +5.1.22.RK.LH GTTAACTTACTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V154 GT 1331807 5.1.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.1.22.RK.LH_H2 H2 +5.1.22.RK.RH CTCAGCGGGACG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V142 GT 1331807 5.1.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.1.22.RK.RH_G2 G2 +5.10.22.RK.RH CGCGCAAGTATT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V81 GT 1331807 5.10.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.10.22.RK.RH_B1 B1 +5.11.22.RK.FH CCTCCGTCATGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.11.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.11.22.RK.FH_B12 B12 +5.11.22.RK.LH AGATGTCCGTCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V8 GT 1331807 5.11.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.11.22.RK.LH_C12 C12 +5.11.22.RK.RH TACAGCGCATAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V67 GT 1331807 5.11.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.11.22.RK.RH_H11 H11 +5.12.22.RK.FH GTTTGAAACACG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V55 GT 1331807 5.12.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.12.22.RK.FH_G11 G11 +5.12.22.RK.LH GTCAGGTGCGGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V31 GT 1331807 5.12.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.12.22.RK.LH_E11 E11 +5.12.22.RK.RH TTCCAATACTCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V43 GT 1331807 5.12.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.12.22.RK.RH_F11 F11 +5.13.22.RK.FH GGAGAACGACAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.13.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.13.22.RK.FH_B8 B8 +5.13.22.RK.LH GGTAGTTCATAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V63 GT 1331807 5.13.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.13.22.RK.LH_H7 H7 +5.13.22.RK.RH ACCTACTTGTCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.13.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.13.22.RK.RH_A8 A8 +5.14.22.RK.FH CCTCACTAGCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V15 GT 1331807 5.14.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.14.22.RK.FH_D7 D7 +5.14.22.RK.LH TCCACAGGGTTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.14.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.14.22.RK.LH_B7 B7 +5.14.22.RK.RH AGATCGTGCCTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.14.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.14.22.RK.RH_C7 C7 +5.15.22.RK.FH TAGTTCGGTGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V27 GT 1331807 5.15.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.15.22.RK.FH_E7 E7 +5.15.22.RK.LH ACTAAAGCAAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V39 GT 1331807 5.15.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.15.22.RK.LH_F7 F7 +5.15.22.RK.RH CTTGCTCATAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V51 GT 1331807 5.15.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.15.22.RK.RH_G7 G7 +5.16.22.RK.FH ACGACAACGGGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V52 GT 1331807 5.16.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.16.22.RK.FH_G8 G8 +5.16.22.RK.LH TAGGAACTCACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V40 GT 1331807 5.16.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.16.22.RK.LH_F8 F8 +5.16.22.RK.RH CGATGAATATCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V64 GT 1331807 5.16.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.16.22.RK.RH_H8 H8 +5.17.22.RK.FH TTAATGGATCGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V28 GT 1331807 5.17.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.17.22.RK.FH_E8 E8 +5.17.22.RK.LH CTAATCAGAGTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V16 GT 1331807 5.17.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.17.22.RK.LH_D8 D8 +5.17.22.RK.RH AATTAATATGTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.17.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.17.22.RK.RH_C8 C8 +5.18.22.RK.FH AGCGCGGCGAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V19 GT 1331807 5.18.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.18.22.RK.FH_D11 D11 +5.18.22.RK.LH GCAACGAACGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V7 GT 1331807 5.18.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.18.22.RK.LH_C11 C11 +5.18.22.RK.RH GTTCTAAGGTGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V65 GT 1331807 5.18.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.18.22.RK.RH_H9 H9 +5.19.22.RK.FH CTAGCGTGCGTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V53 GT 1331807 5.19.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.19.22.RK.FH_G9 G9 +5.19.22.RK.LH CATGTCTTCCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.19.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.19.22.RK.LH_A11 A11 +5.19.22.RK.RH TAATCCATAATC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.19.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.19.22.RK.RH_B11 B11 +5.2.22.RK.FH TACGGTCTGGAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V84 GT 1331807 5.2.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.2.22.RK.FH_B4 B4 +5.2.22.RK.LH ACGTATTCGAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V96 GT 1331807 5.2.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.2.22.RK.LH_C4 C4 +5.2.22.RK.RH TTACTTATCCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V108 GT 1331807 5.2.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.2.22.RK.RH_D4 D4 +5.20.22.RK.FH TCAAGTCCGCAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V29 GT 1331807 5.20.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.20.22.RK.FH_E9 E9 +5.20.22.RK.LH CTACTCCACGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V17 GT 1331807 5.20.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.20.22.RK.LH_D9 D9 +5.20.22.RK.RH GTCCGTCCTGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V41 GT 1331807 5.20.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.20.22.RK.RH_F9 F9 +5.21.22.RK.FH CCTACCATTGTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.21.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.21.22.RK.FH_B9 B9 +5.21.22.RK.LH ACTGTGACGTCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.21.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.21.22.RK.LH_A9 A9 +5.21.22.RK.RH CATTTCGCACTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V5 GT 1331807 5.21.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.21.22.RK.RH_C9 C9 +5.22.22.RK.FH GGCGTAACGGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V70 GT 1331807 5.22.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.22.22.RK.FH_A2 A2 +5.22.22.RK.LH GATCTAATCGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V94 GT 1331807 5.22.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.22.22.RK.LH_C2 C2 +5.22.22.RK.RH AATACAGACCTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V82 GT 1331807 5.22.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.22.22.RK.RH_B2 B2 +5.23.22.RK.FH GATGCCTAATGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V132 GT 1331807 5.23.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.23.22.RK.FH_F4 F4 +5.23.22.RK.LH AGTTGTAGTCCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V120 GT 1331807 5.23.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.23.22.RK.LH_E4 E4 +5.23.22.RK.RH TTAGTTTGTCAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V144 GT 1331807 5.23.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.23.22.RK.RH_G4 G4 +5.24.22.RK.FH CCGCAGCCGCAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V106 GT 1331807 5.24.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.24.22.RK.FH_D2 D2 +5.24.22.RK.LH GAACCGTGCAGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V118 GT 1331807 5.24.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.24.22.RK.LH_E2 E2 +5.24.22.RK.RH ACTAAGTACCCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V130 GT 1331807 5.24.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.24.22.RK.RH_F2 F2 +5.27.22.RK.FH ACGGTACCCTAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.27.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.27.22.RK.FH_A6 A6 +5.27.22.RK.LH CGACACGGAGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.27.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.27.22.RK.LH_B6 B6 +5.27.22.RK.RH GCGTTTGCTAGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.27.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.27.22.RK.RH_C6 C6 +5.29.22.RK.FH CGTTCTGGTGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V26 GT 1331807 5.29.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.29.22.RK.FH_E6 E6 +5.29.22.RK.LH CCGGCGACAGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V14 GT 1331807 5.29.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.29.22.RK.LH_D6 D6 +5.29.22.RK.RH ATCGTAGTGGTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V38 GT 1331807 5.29.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.29.22.RK.RH_F6 F6 +5.3.22.RK.FH GTACGTCACTGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V133 GT 1331807 5.3.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.3.22.RK.FH_F5 F5 +5.3.22.RK.LH GCCGCCAGGGTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V157 GT 1331807 5.3.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.3.22.RK.LH_H5 H5 +5.3.22.RK.RH CCGGCCGCGTGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V145 GT 1331807 5.3.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.3.22.RK.RH_G5 G5 +5.30.22.RK.FH TTAAGTTAAGTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V61 GT 1331807 5.30.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.30.22.RK.FH_H5 H5 +5.30.22.RK.LH TGCGGCGTCAGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V49 GT 1331807 5.30.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.30.22.RK.LH_G5 G5 +5.30.22.RK.RH GCATAAACGACT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V37 GT 1331807 5.30.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.30.22.RK.RH_F5 F5 +5.31.22.RK.FH CGCTGTGGATTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V50 GT 1331807 5.31.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.31.22.RK.FH_G6 G6 +5.31.22.RK.LH AGCCGCGGGTCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V62 GT 1331807 5.31.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.31.22.RK.LH_H6 H6 +5.31.22.RK.RH TGAGTCATTGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.31.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.31.22.RK.RH_A7 A7 +5.4.22.RK.FH GACGTTAAGAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V97 GT 1331807 5.4.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.4.22.RK.FH_C5 C5 +5.4.22.RK.LH AGGGACTTCAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V121 GT 1331807 5.4.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.4.22.RK.LH_E5 E5 +5.4.22.RK.RH ATGGGACCTTCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V109 GT 1331807 5.4.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.4.22.RK.RH_D5 D5 +5.5.22.RK.FH AGGGTGACTTTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V156 GT 1331807 5.5.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.5.22.RK.FH_H4 H4 +5.5.22.RK.LH TTGTGTCTCCCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V73 GT 1331807 5.5.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.5.22.RK.LH_A5 A5 +5.5.22.RK.RH TTCAGTTCGTTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V85 GT 1331807 5.5.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.5.22.RK.RH_B5 B5 +5.6.22.RK.FH ACGGCGTTATGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V117 GT 1331807 5.6.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.6.22.RK.FH_E1 E1 +5.6.22.RK.LH AAGGCGCTCCTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V93 GT 1331807 5.6.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.6.22.RK.LH_C1 C1 +5.6.22.RK.RH CGCAATGAGGGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V105 GT 1331807 5.6.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.6.22.RK.RH_D1 D1 +5.7.22.RK.FH GCTGCGTATACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V141 GT 1331807 5.7.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.7.22.RK.FH_G1 G1 +5.7.22.RK.LH GAGAAGCTTATA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V153 GT 1331807 5.7.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.7.22.RK.LH_H1 H1 +5.7.22.RK.RH CATTTGACGACG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V129 GT 1331807 5.7.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.7.22.RK.RH_F1 F1 +5.8.22.RK.FH AACTCAATAGCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V44 GT 1331807 5.8.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.8.22.RK.FH_F12 F12 +5.8.22.RK.LH TTGAACAAGCCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V32 GT 1331807 5.8.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.8.22.RK.LH_E12 E12 +5.8.22.RK.RH TAGCAGTTGCGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V20 GT 1331807 5.8.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.8.22.RK.RH_D12 D12 +5.9.22.RK.FH ACCTCAGTCAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V56 GT 1331807 5.9.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.9.22.RK.FH_G12 G12 +5.9.22.RK.LH CCTCGCATGACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V69 GT 1331807 5.9.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.9.22.RK.LH_A1 A1 +5.9.22.RK.RH AACAGTAAACAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.9.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.9.22.RK.RH_A12 A12 +6.1.22.RK.FH GCATATGCACTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V13 GT 1331807 6.1.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.1.22.RK.FH_D5 D5 +6.1.22.RK.LH GCTGCCCACCTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.1.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.1.22.RK.LH_C5 C5 +6.1.22.RK.RH GTCACTCCGAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V25 GT 1331807 6.1.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.1.22.RK.RH_E5 E5 +6.10.22.RK.FH ACTCTTACTTAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.10.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.10.22.RK.FH_H12 H12 +6.10.22.RK.LH TCGTTATTCAGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V9 GT 1331807 6.10.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.10.22.RK.LH_D1 D1 +6.10.22.RK.RH TGTCAAAGTGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.10.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.10.22.RK.RH_G12 G12 +6.11.22.RK.FH GTGCCGGCCGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.11.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.11.22.RK.FH_B2 B2 +6.11.22.RK.LH CTTGGAGGCTTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.11.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.11.22.RK.LH_A2 A2 +6.11.22.RK.RH TCATTAGCGTGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V57 GT 1331807 6.11.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.11.22.RK.RH_H1 H1 +6.12.22.RK.FH AGCTCTAGAAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.12.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.12.22.RK.FH_C3 C3 +6.12.22.RK.LH CCTTGACCGATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.12.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.12.22.RK.LH_B3 B3 +6.12.22.RK.RH TATCATATTACG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.12.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.12.22.RK.RH_A3 A3 +6.13.22.RK.FH GAACCAGTACTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.13.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.13.22.RK.FH_H9 H9 +6.13.22.RK.LH CTTATTAAACGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.13.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.13.22.RK.LH_G9 G9 +6.13.22.RK.RH GCCTCTACGTCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.13.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.13.22.RK.RH_A10 A10 +6.14.22.RK.FH TTACACAAAGGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.14.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.14.22.RK.FH_F9 F9 +6.14.22.RK.LH TGAGACCCTACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.14.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.14.22.RK.LH_E9 E9 +6.14.22.RK.RH AATCTTGCGCCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.14.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.14.22.RK.RH_D9 D9 +6.15.22.RK.FH AATTCACCTCCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.15.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.15.22.RK.FH_A12 A12 +6.15.22.RK.LH GAGATACAGTTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.15.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.15.22.RK.LH_C12 C12 +6.15.22.RK.RH TAATCGGTGCCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.15.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.15.22.RK.RH_B12 B12 +6.16.22.RK.FH AGAGCCAAGAGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.16.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.16.22.RK.FH_F12 F12 +6.16.22.RK.LH CACGCAGTCTAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.16.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.16.22.RK.LH_E12 E12 +6.16.22.RK.RH TATTGCAGCAGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.16.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.16.22.RK.RH_D12 D12 +6.17.22.RK.FH AATAACTAGGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.17.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.17.22.RK.FH_D11 D11 +6.17.22.RK.LH ATTACGTATCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.17.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.17.22.RK.LH_E11 E11 +6.17.22.RK.RH GAAATCTTGAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.17.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.17.22.RK.RH_C11 C11 +6.18.22.RK.FH CAAGTGAAGGGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.18.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.18.22.RK.FH_B10 B10 +6.18.22.RK.LH CTTGATTCTTGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.18.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.18.22.RK.LH_C10 C10 +6.18.22.RK.RH AGGATCAGGGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.18.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.18.22.RK.RH_D10 D10 +6.19.22.RK.FH TATCCAAGCGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.19.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.19.22.RK.FH_F11 F11 +6.19.22.RK.LH TATTTGATTGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.19.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.19.22.RK.LH_G11 G11 +6.19.22.RK.RH GTGCCATAATCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.19.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.19.22.RK.RH_H11 H11 +6.2.22.RK.FH ACCGAACAATCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.2.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.2.22.RK.FH_A5 A5 +6.2.22.RK.LH CCAACCCAGATC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V60 GT 1331807 6.2.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.2.22.RK.LH_H4 H4 +6.2.22.RK.RH TCGAGAGTTTGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.2.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.2.22.RK.RH_B5 B5 +6.20.22.RK.FH TCATGGCCTCCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V22 GT 1331807 6.20.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.20.22.RK.FH_E2 E2 +6.20.22.RK.LH AGAGGGTGATCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.20.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.20.22.RK.LH_C2 C2 +6.20.22.RK.RH GGATACTCGCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V10 GT 1331807 6.20.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.20.22.RK.RH_D2 D2 +6.21.22.RK.FH ATACATGCAAGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.21.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.21.22.RK.FH_D7 D7 +6.21.22.RK.LH TGATATCGTCTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.21.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.21.22.RK.LH_C7 C7 +6.21.22.RK.RH GGTTGCCCTGTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.21.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.21.22.RK.RH_B7 B7 +6.22.22.RK.FH GGTTCATGAACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.22.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.22.22.RK.FH_G7 G7 +6.22.22.RK.LH GTTGATACGATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.22.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.22.22.RK.LH_E7 E7 +6.22.22.RK.RH GAAGAGGGTTGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.22.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.22.22.RK.RH_F7 F7 +6.23.22.RK.FH AATGGTTCAGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.23.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.23.22.RK.FH_H8 H8 +6.23.22.RK.LH.A TAACAATAATTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.23.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.23.22.RK.LH_G8 G8 +6.23.22.RK.LH.B GCTCGAAGATTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.23.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.23.22.RK.LH_G10 G10 +6.24.22.RK.FH ACGACGCATTTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.24.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.24.22.RK.FH_F10 F10 +6.24.22.RK.RH ACTTGGTGTAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.24.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.24.22.RK.RH_E10 E10 +6.25.22.RK.FH ACTACTGAGGAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.25.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.25.22.RK.FH_A11 A11 +6.25.22.RK.LH CACGTTTATTCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.25.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.25.22.RK.LH_B11 B11 +6.25.22.RK.RH CGCACCCATACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.25.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.25.22.RK.RH_H10 H10 +6.26.22.RK.FH CGGTGACCTACT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.26.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.26.22.RK.FH_C8 C8 +6.26.22.RK.LH CTTAGTGCAGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.26.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.26.22.RK.LH_D8 D8 +6.26.22.RK.RH.A GTCAACGCTGTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.26.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.26.22.RK.RH_E8 E8 +6.26.22.RK.RH.B TGAGTGGTCTGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.26.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.26.22.RK.RH_F8 F8 +6.27.22.RK.FH CATATAGCCCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.27.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.27.22.RK.FH_B8 B8 +6.27.22.RK.LH TGAGTATGAGTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.27.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.27.22.RK.LH_H7 H7 +6.27.22.RK.RH AATTTAGGTAGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.27.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.27.22.RK.RH_A8 A8 +6.28.22.RK.FH TTACTGTGGCCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.28.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.28.22.RK.FH_G6 G6 +6.28.22.RK.LH TACGGATTATGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.28.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.28.22.RK.LH_D6 D6 +6.28.22.RK.RH ACATACTGAGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.28.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.28.22.RK.RH_E6 E6 +6.29.22.RK.FH GCCTATGAGATC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.29.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.29.22.RK.FH_B9 B9 +6.29.22.RK.LH GACTCAACCAGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.29.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.29.22.RK.LH_A9 A9 +6.29.22.RK.RH AATGCGCGTATA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.29.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.29.22.RK.RH_C9 C9 +6.3.22.RK.FH ATGTGCTGCTCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V34 GT 1331807 6.3.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.3.22.RK.FH_F2 F2 +6.3.22.RK.LH CGCCGTACTTGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V58 GT 1331807 6.3.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.3.22.RK.LH_H2 H2 +6.3.22.RK.RH CCACGAGCAGGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V46 GT 1331807 6.3.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.3.22.RK.RH_G2 G2 +6.30.22.RK.FH TACCGAAGGTAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.30.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.30.22.RK.FH_H6 H6 +6.30.22.RK.LH TACAATATCTGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.30.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.30.22.RK.LH_A7 A7 +6.30.22.RK.RH CAAACGCACTAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.30.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.30.22.RK.RH_F6 F6 +6.4.22.RK.FH CAGGAACCAGGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V36 GT 1331807 6.4.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.4.22.RK.FH_F4 F4 +6.4.22.RK.LH CAAAGGAGCCCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V48 GT 1331807 6.4.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.4.22.RK.LH_G4 G4 +6.4.22.RK.RH GTTGGACGAAGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V24 GT 1331807 6.4.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.4.22.RK.RH_E4 E4 +6.5.22.RK.FH CAAACTGCGTTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.5.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.5.22.RK.FH_B4 B4 +6.5.22.RK.LH CTGACACGAATA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.5.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.5.22.RK.LH_C4 C4 +6.5.22.RK.RH AGCAGTGCGGTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V12 GT 1331807 6.5.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.5.22.RK.RH_D4 D4 +6.6.22.RK.FH GCGTGCCCGGCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V47 GT 1331807 6.6.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.6.22.RK.FH_G3 G3 +6.6.22.RK.LH CTATATTATCCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.6.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.6.22.RK.LH_A4 A4 +6.6.22.RK.RH TAAACCTGGACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V59 GT 1331807 6.6.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.6.22.RK.RH_H3 H3 +6.7.22.RK.FH CAATCATAGGTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V23 GT 1331807 6.7.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.7.22.RK.FH_E3 E3 +6.7.22.RK.LH AATGTTCAACTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V11 GT 1331807 6.7.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.7.22.RK.LH_D3 D3 +6.7.22.RK.RH CCGATAAAGGTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V35 GT 1331807 6.7.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.7.22.RK.RH_F3 F3 +6.8.22.RK.FH CTACAGGGTCTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.8.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.8.22.RK.FH_A1 A1 +6.8.22.RK.LH TTCGATGCCGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.8.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.8.22.RK.LH_C1 C1 +6.8.22.RK.RH GTTCATTAAACT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.8.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.8.22.RK.RH_B1 B1 +6.9.22.RK.FH TCAGACCAACTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V45 GT 1331807 6.9.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.9.22.RK.FH_G1 G1 +6.9.22.RK.LH ATATGTTCTCAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V33 GT 1331807 6.9.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.9.22.RK.LH_F1 F1 +6.9.22.RK.RH ACTCTGTAATTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V21 GT 1331807 6.9.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.9.22.RK.RH_E1 E1 +9.1.22.RK.FH AGAATCCACCAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V116 GT 1331807 9.1.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.1.22.RK.FH_D12 D12 +9.1.22.RK.LH TGACAGAATCCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V68 GT 1331807 9.1.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_9.1.22.RK.LH_H12 H12 +9.1.22.RK.RH TCGTTGGGACTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V164 GT 1331807 9.1.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.1.22.RK.RH_H12 H12 +9.10.22.RK.FH AGTGCAGGAGCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V138 GT 1331807 9.10.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.10.22.RK.FH_F10 F10 +9.10.22.RK.LH AGTGTTTCGGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V126 GT 1331807 9.10.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.10.22.RK.LH_E10 E10 +9.10.22.RK.RH GTTGCTGAGTCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V150 GT 1331807 9.10.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.10.22.RK.RH_G10 G10 +9.11.22.RK.FH TTGCCGCTCTGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V89 GT 1331807 9.11.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.11.22.RK.FH_B9 B9 +9.11.22.RK.LH CCAGGACAGGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V77 GT 1331807 9.11.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.11.22.RK.LH_A9 A9 +9.11.22.RK.RH CCACAACGATCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V101 GT 1331807 9.11.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.11.22.RK.RH_C9 C9 +9.12.22.RK.FH ACACACCCTGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V159 GT 1331807 9.12.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.12.22.RK.FH_H7 H7 +9.12.22.RK.LH AGATTCGCTCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V88 GT 1331807 9.12.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.12.22.RK.LH_B8 B8 +9.12.22.RK.RH AACTTTCAGGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V76 GT 1331807 9.12.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.12.22.RK.RH_A8 A8 +9.13.22.RK.FH CATAAGGGAGGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V201 GT 1331807 9.13.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.13.22.RK.FH_D1 D1 +9.13.22.RK.LH TATATAGTATCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V189 GT 1331807 9.13.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.13.22.RK.LH_C1 C1 +9.13.22.RK.RH GTGCAACCAATC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V213 GT 1331807 9.13.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.13.22.RK.RH_E1 E1 +9.14.22.RK.FH GAGCCATCTGTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V103 GT 1331807 9.14.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.14.22.RK.FH_C11 C11 +9.14.22.RK.LH ATTTCCGCTAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V127 GT 1331807 9.14.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.14.22.RK.LH_E11 E11 +9.14.22.RK.RH TTCCACACGTGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V115 GT 1331807 9.14.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.14.22.RK.RH_D11 D11 +9.15.22.RK.FH AAGTCACACACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V111 GT 1331807 9.15.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.15.22.RK.FH_D7 D7 +9.15.22.RK.LH CCGAGGTATAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V87 GT 1331807 9.15.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.15.22.RK.LH_B7 B7 +9.15.22.RK.RH TTAACAAGGCAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V99 GT 1331807 9.15.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.15.22.RK.RH_C7 C7 +9.16.22.RK.FH TCGCTACAGATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V134 GT 1331807 9.16.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.16.22.RK.FH_F6 F6 +9.16.22.RK.LH CGGCCAGAAGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V122 GT 1331807 9.16.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.16.22.RK.LH_E6 E6 +9.16.22.RK.RH TCCGATAATCGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V110 GT 1331807 9.16.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.16.22.RK.RH_D6 D6 +9.17.22.RK.FH ATTATGATTATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V146 GT 1331807 9.17.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.17.22.RK.FH_G6 G6 +9.17.22.RK.LH AACCACTAACCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V75 GT 1331807 9.17.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.17.22.RK.LH_A7 A7 +9.17.22.RK.RH GCCACCGCCGGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V158 GT 1331807 9.17.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.17.22.RK.RH_H6 H6 +9.19.22.RK.FH CAATGTAGACAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V74 GT 1331807 9.19.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.19.22.RK.FH_A6 A6 +9.19.22.RK.LH CCGCGTCTCAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V86 GT 1331807 9.19.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.19.22.RK.LH_B6 B6 +9.19.22.RK.RH TGGTGGAGTTTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V98 GT 1331807 9.19.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.19.22.RK.RH_C6 C6 +9.2.22.RK.FH GCCTACTCTCGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V251 GT 1331807 9.2.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.2.22.RK.FH_H3 H3 +9.2.22.RK.LH CTCCGAACAACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V168 GT 1331807 9.2.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.2.22.RK.LH_A4 A4 +9.2.22.RK.RH CCACTGCCCACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V180 GT 1331807 9.2.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.2.22.RK.RH_B4 B4 +9.20.22.RK.FH ACACCGCACAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V151 GT 1331807 9.20.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.20.22.RK.FH_G11 G11 +9.20.22.RK.LH CAGCCCTACCCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V163 GT 1331807 9.20.22.RK,LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.20.22.RK,LH_H11 H11 +9.20.22.RK.RH GTACTCGAACCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V139 GT 1331807 9.20.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.20.22.RK.RH_F11 F11 +9.21.22.RK.FH ATAGTCCTTTAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V136 GT 1331807 9.21.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.21.22.RK.FH_F8 F8 +9.21.22.RK.LH TATAGGCTCCGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V160 GT 1331807 9.21.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.21.22.RK.LH_H8 H8 +9.21.22.RK.RH TCTTATAACGCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V148 GT 1331807 9.21.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.21.22.RK.RH_G8 G8 +9.22.22.RK.FH CCGGCTTATGTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V135 GT 1331807 9.22.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.22.22.RK.FH_F7 F7 +9.22.22.RK.LH CGAATACTGACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V147 GT 1331807 9.22.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.22.22.RK.LH_G7 G7 +9.22.22.RK.RH TGGCAGCGAGCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V123 GT 1331807 9.22.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.22.22.RK.RH_E7 E7 +9.23.22.RK.FH GAAGTAGCGAGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V112 GT 1331807 9.23.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.23.22.RK.FH_D8 D8 +9.23.22.RK.LH GTGAATGTTCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V124 GT 1331807 9.23.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.23.22.RK.LH_E8 E8 +9.23.22.RK.RH AACCGCATAAGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V100 GT 1331807 9.23.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.23.22.RK.RH_C8 C8 +9.24.22.RK.FH GATATACCAGTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V104 GT 1331807 9.24.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.24.22.RK.FH_C12 C12 +9.24.22.RK.LH CTATCTCCTGTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V92 GT 1331807 9.24.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.24.22.RK.LH_B12 B12 +9.24.22.RK.RH TCCGCCTAGTCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V80 GT 1331807 9.24.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.24.22.RK.RH_A12 A12 +9.25.22.RK.FH ATAGGAATAACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V140 GT 1331807 9.25.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.25.22.RK.FH_F12 F12 +9.25.22.RK.LH CAAACCTATGGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V128 GT 1331807 9.25.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.25.22.RK.LH_E12 E12 +9.26.22.RK.FH GTGTCGAGGGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V114 GT 1331807 9.26.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.26.22.RK.FH_D10 D10 +9.26.22.RK.LH AGTTCTCATTAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V102 GT 1331807 9.26.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.26.22.RK.LH_C10 C10 +9.26.22.RK.RH AGACTTCTCAGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V90 GT 1331807 9.26.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.26.22.RK.RH_B10 B10 +9.27.22.RK.FH GCGCGGCGTTGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V78 GT 1331807 9.27.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.27.22.RK.FH_A10 A10 +9.27.22.RK.LH ATAATTGCCGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V161 GT 1331807 9.27.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.27.22.RK.LH_H9 H9 +9.27.22.RK.RH TAAGGTCGATAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V149 GT 1331807 9.27.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.27.22.RK.RH_G9 G9 +9.29.22.RK.FH CTAGAGCTCCCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V249 GT 1331807 9.29.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.29.22.RK.FH_H1 H1 +9.29.22.RK.LH TACTGTACTGTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V237 GT 1331807 9.29.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.29.22.RK.LH_G1 G1 +9.29.22.RK.RH CTCACCTAGGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V225 GT 1331807 9.29.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.29.22.RK.RH_F1 F1 +9.3.22.RK.FH ACAGTTGTACGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V203 GT 1331807 9.3.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.3.22.RK.FH_D3 D3 +9.3.22.RK.LH ATTTACAATTGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V179 GT 1331807 9.3.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.3.22.RK.LH_B3 B3 +9.3.22.RK.RH GTCACGGACATT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V191 GT 1331807 9.3.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.3.22.RK.RH_C3 C3 +9.30.22.RK.FH GTTTGGCCACAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V177 GT 1331807 9.30.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.30.22.RK.FH_B1 B1 +9.30.22.RK.LH CACAACCACAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V152 GT 1331807 9.30.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.30.22.RK.LH_G12 G12 +9.30.22.RK.RH TAGGACGGGAGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V165 GT 1331807 9.30.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.30.22.RK.RH_A1 A1 +9.4.22.RK.FH TTGCACCGTCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V167 GT 1331807 9.4.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.4.22.RK.FH_A3 A3 +9.4.22.RK.LH GGTCTTAGCACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V250 GT 1331807 9.4.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.4.22.RK.LH_H2 H2 +9.4.22.RK.RH TCTCGCACTGGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V238 GT 1331807 9.4.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.4.22.RK.RH_G2 G2 +9.5.22.RK.FH ACCCAAGCGTTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V214 GT 1331807 9.5.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.5.22.RK.FH_E2 E2 +9.5.22.RK.LH AGATGCAATGAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V226 GT 1331807 9.5.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.5.22.RK.LH_F2 F2 +9.5.22.RK.RH CAGGCCACTCTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V202 GT 1331807 9.5.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.5.22.RK.RH_D2 D2 +9.6.22.RK.FH TCTTGCGGAGTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V91 GT 1331807 9.6.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.6.22.RK.FH_B11 B11 +9.6.22.RK.LH CGGAGAGACATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V162 GT 1331807 9.6.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.6.22.RK.LH_H10 H10 +9.6.22.RK.RH GTCGCTTGCACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V79 GT 1331807 9.6.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.6.22.RK.RH_A11 A11 +9.7.22.RK.FH TATGTTGACGGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V125 GT 1331807 9.7.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.7.22.RK.FH_E9 E9 +9.7.22.RK.LH TCGAGCCGATCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V137 GT 1331807 9.7.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.7.22.RK.LH_F9 F9 +9.7.22.RK.RH CACCATCTCCGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V113 GT 1331807 9.7.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.7.22.RK.RH_D9 D9 +9.8.22.RK.FH ACTGGCAAACCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V215 GT 1331807 9.8.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.8.22.RK.FH_E3 E3 +9.8.22.RK.LH ACCAGTGACTCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V239 GT 1331807 9.8.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.8.22.RK.LH_G3 G3 +9.8.22.RK.RH GCATTCGGCGTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V227 GT 1331807 9.8.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.8.22.RK.RH_F3 F3 +9.9.22.RK.FH GTCCTACACAGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V178 GT 1331807 9.9.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.9.22.RK.FH_B2 B2 +9.9.22.RK.LH AAGTCTTATCTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V166 GT 1331807 9.9.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.9.22.RK.LH_A2 A2 +9.9.22.RK.RH ACTGTTTACTGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V190 GT 1331807 9.9.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.9.22.RK.RH_C2 C2 +BLANK.242.4C GAATATACCTGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V192 GT 1331807 BLANK.242.4C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK.242.4C_C4 C4 +BLANK238.3A AGCCCTGCTACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 BLANK238.3A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3A_A3 A3 +BLANK238.3B ACTCGCTCGCTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 BLANK238.3B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3B_B3 B3 +BLANK238.3C CTGTCTATACTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 BLANK238.3C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3C_C3 C3 +BLANK238.3D TAATCTCGCCGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 BLANK238.3D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3D_D3 D3 +BLANK238.3E AGTAAAGATCGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 BLANK238.3E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3E_E3 E3 +BLANK238.3F TTGCTGGACGCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 BLANK238.3F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3F_F3 F3 +BLANK238.3G TTGCGGACCCTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 BLANK238.3G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3G_G3 G3 +BLANK238.3H CGGTATAGCAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 BLANK238.3H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3H_H3 H3 +BLANK239.10A CTCTGAGGTAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 BLANK239.10A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10A_A10 A10 +BLANK239.10B TCCGGCGGGCAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 BLANK239.10B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10B_B10 B10 +BLANK239.10C ACATGATATTCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V6 GT 1331807 BLANK239.10C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10C_C10 C10 +BLANK239.10D TAAGGCATCGCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V18 GT 1331807 BLANK239.10D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10D_D10 D10 +BLANK239.10E CACACAAAGTCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V30 GT 1331807 BLANK239.10E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10E_E10 E10 +BLANK239.10F CGAGGCGAGTCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V42 GT 1331807 BLANK239.10F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10F_F10 F10 +BLANK239.10G TAGTCTAAGGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V54 GT 1331807 BLANK239.10G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10G_G10 G10 +BLANK239.10H ATGACTAAGATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V66 GT 1331807 BLANK239.10H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10H_H10 H10 +BLANK240.3A GCGAGGAAGTCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V71 GT 1331807 BLANK240.3A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3A_A3 A3 +BLANK240.3B GGACAAGTGCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V83 GT 1331807 BLANK240.3B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3B_B3 B3 +BLANK240.3C CTGATGTACACG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V95 GT 1331807 BLANK240.3C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3C_C3 C3 +BLANK240.3D TGGAGCCTTGTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V107 GT 1331807 BLANK240.3D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3D_D3 D3 +BLANK240.3E ACGTGCCTTAGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V119 GT 1331807 BLANK240.3E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3E_E3 E3 +BLANK240.3F CACCCTTGCGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V131 GT 1331807 BLANK240.3F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3F_F3 F3 +BLANK240.3G ATGCCTCGTAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V143 GT 1331807 BLANK240.3G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3G_G3 G3 +BLANK240.3H GTTGTTCTGGGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V155 GT 1331807 BLANK240.3H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3H_H3 H3 +BLANK242.10A TGCTACAGACGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V174 GT 1331807 BLANK242.10A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10A_A10 A10 +BLANK242.10B GATCCCACGTAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V186 GT 1331807 BLANK242.10B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10B_B10 B10 +BLANK242.10C CGCTAGGATGTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V198 GT 1331807 BLANK242.10C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10C_C10 C10 +BLANK242.10D CTACTTACATCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V210 GT 1331807 BLANK242.10D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10D_D10 D10 +BLANK242.10E ACCACCGTAACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V222 GT 1331807 BLANK242.10E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10E_E10 E10 +BLANK242.10F CGGTTGGCGGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V234 GT 1331807 BLANK242.10F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10F_F10 F10 +BLANK242.10G CCACCGGGCCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V246 GT 1331807 BLANK242.10G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10G_G10 G10 +BLANK242.10H TATGTGCCGGCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V258 GT 1331807 BLANK242.10H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10H_H10 H10 +BLANK242.11A AGGTGAGTTCTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V175 GT 1331807 BLANK242.11A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11A_A11 A11 +BLANK242.11B CCGCCAGCTTTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V187 GT 1331807 BLANK242.11B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11B_B11 B11 +BLANK242.11C AGCGGTAGCGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V199 GT 1331807 BLANK242.11C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11C_C11 C11 +BLANK242.11D CGCACGTACCTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V211 GT 1331807 BLANK242.11D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11D_D11 D11 +BLANK242.11E AGGAAGTAACTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V223 GT 1331807 BLANK242.11E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11E_E11 E11 +BLANK242.11F CGATTCCTTAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V235 GT 1331807 BLANK242.11F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11F_F11 F11 +BLANK242.11G AATCCGGTCACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V247 GT 1331807 BLANK242.11G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11G_G11 G11 +BLANK242.11H ATACCGTCTTTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V259 GT 1331807 BLANK242.11H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11H_H11 H11 +BLANK242.12A AACGATCATAGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V176 GT 1331807 BLANK242.12A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12A_A12 A12 +BLANK242.12B TCATCTTGATTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V188 GT 1331807 BLANK242.12B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12B_B12 B12 +BLANK242.12C GTCAGTATGGCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V200 GT 1331807 BLANK242.12C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12C_C12 C12 +BLANK242.12D GTCCTCGCGACT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V212 GT 1331807 BLANK242.12D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12D_D12 D12 +BLANK242.12E CGTTCGCTAGCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V224 GT 1331807 BLANK242.12E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12E_E12 E12 +BLANK242.12F TGCCTGCTCGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V236 GT 1331807 BLANK242.12F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12F_F12 F12 +BLANK242.12G TCTTACCCATAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V248 GT 1331807 BLANK242.12G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12G_G12 G12 +BLANK242.12H TGTGCTTGTAGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V260 GT 1331807 BLANK242.12H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12H_H12 H12 +BLANK242.4D ACCAGAAATGTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V204 GT 1331807 BLANK242.4D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.4D_D4 D4 +BLANK242.4E AACACCATCGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V216 GT 1331807 BLANK242.4E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.4E_E4 E4 +BLANK242.4F TCTACATACATA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V228 GT 1331807 BLANK242.4F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.4F_F4 F4 +BLANK242.4G TGGCGCACGGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V240 GT 1331807 BLANK242.4G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.4G_G4 G4 +BLANK242.4H ACTGCCCGATAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V252 GT 1331807 BLANK242.4H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.4H_H4 H4 +BLANK242.5A TCTGGCTACGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V169 GT 1331807 BLANK242.5A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5A_A5 A5 +BLANK242.5B ATAGTTAGGGCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V181 GT 1331807 BLANK242.5B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5B_B5 B5 +BLANK242.5C GAATCTGACAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V193 GT 1331807 BLANK242.5C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5C_C5 C5 +BLANK242.5D CTCATCATGTTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V205 GT 1331807 BLANK242.5D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5D_D5 D5 +BLANK242.5E TTATCCAGTCCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V217 GT 1331807 BLANK242.5E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5E_E5 E5 +BLANK242.5F GAGTCTTGGTAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V229 GT 1331807 BLANK242.5F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5F_F5 F5 +BLANK242.5G CATTTACATCAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V241 GT 1331807 BLANK242.5G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5G_G5 G5 +BLANK242.5H TTCTTAACGCCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V253 GT 1331807 BLANK242.5H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5H_H5 H5 +BLANK242.6A AGTAGTTTCCTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V170 GT 1331807 BLANK242.6A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6A_A6 A6 +BLANK242.6B GACCCGTTTCGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V182 GT 1331807 BLANK242.6B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6B_B6 B6 +BLANK242.6C ATTGCCTTGATT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V194 GT 1331807 BLANK242.6C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6C_C6 C6 +BLANK242.6D TTAGGATTCTAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V206 GT 1331807 BLANK242.6D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6D_D6 D6 +BLANK242.6E GTTTATCTTAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V218 GT 1331807 BLANK242.6E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6E_E6 E6 +BLANK242.6F CAGTCTAGTACG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V230 GT 1331807 BLANK242.6F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6F_F6 F6 +BLANK242.6G GTGGGACTGCGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V242 GT 1331807 BLANK242.6G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6G_G6 G6 +BLANK242.6H CTCCCGAGCTCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V254 GT 1331807 BLANK242.6H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6H_H6 H6 +BLANK242.7A CAGATCCCAACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V171 GT 1331807 BLANK242.7A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7A_A7 A7 +BLANK242.7B TGACTGCGTTAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V183 GT 1331807 BLANK242.7B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7B_B7 B7 +BLANK242.7C GAGCCCAAAGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V195 GT 1331807 BLANK242.7C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7C_C7 C7 +BLANK242.7D CAACGAACCATC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V207 GT 1331807 BLANK242.7D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7D_D7 D7 +BLANK242.7E GTTCGCCGCATC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V219 GT 1331807 BLANK242.7E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7E_E7 E7 +BLANK242.7F GTTCGAGTGAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V231 GT 1331807 BLANK242.7F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7F_F7 F7 +BLANK242.7G CGGCCTAAGTTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V243 GT 1331807 BLANK242.7G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7G_G7 G7 +BLANK242.7H TAGACTTCAGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V255 GT 1331807 BLANK242.7H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7H_H7 H7 +BLANK242.8A GATAGCACTCGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V172 GT 1331807 BLANK242.8A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8A_A8 A8 +BLANK242.8B ACGTTAATATTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V184 GT 1331807 BLANK242.8B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8B_B8 B8 +BLANK242.8C CCATGTGGCTCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V196 GT 1331807 BLANK242.8C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8C_C8 C8 +BLANK242.8D ACACGTTTGGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V208 GT 1331807 BLANK242.8D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8D_D8 D8 +BLANK242.8E AGACTATTTCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V220 GT 1331807 BLANK242.8E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8E_E8 E8 +BLANK242.8F AGTCCGAGTTGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V232 GT 1331807 BLANK242.8F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8F_F8 F8 +BLANK242.8G GCTGAGCCTTTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V244 GT 1331807 BLANK242.8G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8G_G8 G8 +BLANK242.8H ACTTAGACTCTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V256 GT 1331807 BLANK242.8H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8H_H8 H8 +BLANK242.9A GTAATTGTAATT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V173 GT 1331807 BLANK242.9A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9A_A9 A9 +BLANK242.9B TCTAACGAGTGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V185 GT 1331807 BLANK242.9B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9B_B9 B9 +BLANK242.9C CGTTCCTTGTTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V197 GT 1331807 BLANK242.9C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9C_C9 C9 +BLANK242.9D CGTCGCAGCCTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V209 GT 1331807 BLANK242.9D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9D_D9 D9 +BLANK242.9E AGCGATTCCTCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V221 GT 1331807 BLANK242.9E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9E_E9 E9 +BLANK242.9F CGTGAGGACCAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V233 GT 1331807 BLANK242.9F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9F_F9 F9 +BLANK242.9G AGAGACGCGTAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V245 GT 1331807 BLANK242.9G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9G_G9 G9 +BLANK242.9H GGACCTGGATGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V257 GT 1331807 BLANK242.9H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9H_H9 H9 diff --git a/qp_klp/tests/data/good-sample-prep.tsv b/tests/data/good-sample-prep.tsv similarity index 100% rename from qp_klp/tests/data/good-sample-prep.tsv rename to tests/data/good-sample-prep.tsv diff --git a/tests/data/good-sample-sheet.csv b/tests/data/good-sample-sheet.csv new file mode 100644 index 00000000..d2428bf9 --- /dev/null +++ b/tests/data/good-sample-sheet.csv @@ -0,0 +1,816 @@ +[Header],,,,,,,,,,, +IEMFileVersion,4,,,,,,,,,, +SheetType,standard_metag,,,,,,,,,, +SheetVersion,100,,,,,,,,,, +Investigator Name,Knight,,,,,,,,,, +Experiment Name,RKL0042,,,,,,,,,, +Date,2020-02-26,,,,,,,,,, +Workflow,GenerateFASTQ,,,,,,,,,, +Application,FASTQ Only,,,,,,,,,, +Assay,Metagenomic,,,,,,,,,, +Description,,,,,,,,,,, +Chemistry,Default,,,,,,,,,, +,,,,,,,,,,, +[Reads],,,,,,,,,,, +150,,,,,,,,,,, +150,,,,,,,,,,, +,,,,,,,,,,, +[Settings],,,,,,,,,,, +ReverseComplement,0,,,,,,,,,, +,,,,,,,,,,, +[Data],,,,,,,,,,, +Lane,Sample_ID,Sample_Name,Sample_Plate,well_id_384,I7_Index_ID,index,I5_Index_ID,index2,Sample_Project,syndna_pool_number,Well_description +1,CDPH-SAL__Salmonella__Typhi__MDL-143,CDPH-SAL..Salmonella..Typhi..MDL-143,Feist_11661_P40,A1,iTru7_107_07,CCGACTAT,iTru5_01_A,ACCGACAA,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-143 +1,CDPH-SAL_Salmonella_Typhi_MDL-144,CDPH-SAL.Salmonella.Typhi.MDL-144,Feist_11661_P40,C1,iTru7_107_08,CCGACTAT,iTru5_02_A,CTTCGCAA,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-144 +1,CDPH-SAL_Salmonella_Typhi_MDL-145,CDPH-SAL.Salmonella.Typhi.MDL-145,Feist_11661_P40,E1,iTru7_107_09,GCCTTGTT,iTru5_03_A,AACACCAC,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-145 +1,CDPH-SAL_Salmonella_Typhi_MDL-146,CDPH-SAL.Salmonella.Typhi.MDL-146,Feist_11661_P40,G1,iTru7_107_10,AACTTGCC,iTru5_04_A,CGTATCTC,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-146 +1,CDPH-SAL_Salmonella_Typhi_MDL-147,CDPH-SAL.Salmonella.Typhi.MDL-147,Feist_11661_P40,I1,iTru7_107_11,CAATGTGG,iTru5_05_A,GGTACGAA,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-147 +1,CDPH-SAL_Salmonella_Typhi_MDL-148,CDPH-SAL.Salmonella.Typhi.MDL-148,Feist_11661_P40,K1,iTru7_107_12,AAGGCTGA,iTru5_06_A,CGATCGAT,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-148 +1,CDPH-SAL_Salmonella_Typhi_MDL-149,CDPH-SAL.Salmonella.Typhi.MDL-149,Feist_11661_P40,M1,iTru7_108_01,TTACCGAG,iTru5_07_A,AAGACACC,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-149 +1,CDPH-SAL_Salmonella_Typhi_MDL-150,CDPH-SAL.Salmonella.Typhi.MDL-150,Feist_11661_P40,O1,iTru7_108_02,GTCCTAAG,iTru5_08_A,CATCTGCT,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-150 +1,CDPH-SAL_Salmonella_Typhi_MDL-151,CDPH-SAL.Salmonella.Typhi.MDL-151,Feist_11661_P40,A3,iTru7_108_03,GAAGGTTC,iTru5_09_A,CTCTCAGA,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-151 +1,CDPH-SAL_Salmonella_Typhi_MDL-152,CDPH-SAL.Salmonella.Typhi.MDL-152,Feist_11661_P40,C3,iTru7_108_04,GAAGAGGT,iTru5_10_A,TCGTCTGA,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-152 +1,CDPH-SAL_Salmonella_Typhi_MDL-153,CDPH-SAL.Salmonella.Typhi.MDL-153,Feist_11661_P40,E3,iTru7_108_05,TCTGAGAG,iTru5_11_A,CAATAGCC,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-153 +1,CDPH-SAL_Salmonella_Typhi_MDL-154,CDPH-SAL.Salmonella.Typhi.MDL-154,Feist_11661_P40,G3,iTru7_108_06,ACCGCATA,iTru5_12_A,CATTCGTC,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-154 +1,CDPH-SAL_Salmonella_Typhi_MDL-155,CDPH-SAL.Salmonella.Typhi.MDL-155,Feist_11661_P40,I3,iTru7_108_07,GAAGTACC,iTru5_01_B,AGTGGCAA,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-155 +1,CDPH-SAL_Salmonella_Typhi_MDL-156,CDPH-SAL.Salmonella.Typhi.MDL-156,Feist_11661_P40,K3,iTru7_108_08,CAGGTATC,iTru5_02_B,GTGGTATG,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-156 +1,CDPH-SAL_Salmonella_Typhi_MDL-157,CDPH-SAL.Salmonella.Typhi.MDL-157,Feist_11661_P40,M3,iTru7_108_09,TCTCTAGG,iTru5_03_B,TGAGCTGT,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-157 +1,CDPH-SAL_Salmonella_Typhi_MDL-158,CDPH-SAL.Salmonella.Typhi.MDL-158,Feist_11661_P40,O3,iTru7_108_10,AAGCACTG,iTru5_04_B,CGTCAAGA,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-158 +1,CDPH-SAL_Salmonella_Typhi_MDL-159,CDPH-SAL.Salmonella.Typhi.MDL-159,Feist_11661_P40,A5,iTru7_108_11,CCAAGCAA,iTru5_05_B,AAGCATCG,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-159 +1,CDPH-SAL_Salmonella_Typhi_MDL-160,CDPH-SAL.Salmonella.Typhi.MDL-160,Feist_11661_P40,C5,iTru7_108_12,TGTTCGAG,iTru5_06_B,TACTCCAG,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-160 +1,CDPH-SAL_Salmonella_Typhi_MDL-161,CDPH-SAL.Salmonella.Typhi.MDL-161,Feist_11661_P40,E5,iTru7_109_01,CTCGTCTT,iTru5_07_B,GATACCTG,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-161 +1,CDPH-SAL_Salmonella_Typhi_MDL-162,CDPH-SAL.Salmonella.Typhi.MDL-162,Feist_11661_P40,G5,iTru7_109_02,CGAACTGT,iTru5_08_B,ACCTCTTC,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-162 +1,CDPH-SAL_Salmonella_Typhi_MDL-163,CDPH-SAL.Salmonella.Typhi.MDL-163,Feist_11661_P40,I5,iTru7_109_03,CATTCGGT,iTru5_09_B,ACGGACTT,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-163 +1,CDPH-SAL_Salmonella_Typhi_MDL-164,CDPH-SAL.Salmonella.Typhi.MDL-164,Feist_11661_P40,K5,iTru7_109_04,TCGGTTAC,iTru5_10_B,CATGTGTG,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-164 +1,CDPH-SAL_Salmonella_Typhi_MDL-165,CDPH-SAL.Salmonella.Typhi.MDL-165,Feist_11661_P40,M5,iTru7_109_05,AAGTCGAG,iTru5_11_B,TGCCTCAA,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-165 +1,CDPH-SAL_Salmonella_Typhi_MDL-166,CDPH-SAL.Salmonella.Typhi.MDL-166,Feist_11661_P40,O5,iTru7_109_06,TATCGGTC,iTru5_12_B,ATCTGACC,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-166 +1,CDPH-SAL_Salmonella_Typhi_MDL-167,CDPH-SAL.Salmonella.Typhi.MDL-167,Feist_11661_P40,A7,iTru7_109_07,TATTCGCC,iTru5_01_C,CACAGACT,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-167 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+1,Pputida_PALE__HGL_Pputida_175,Pputida.PALE.HGL.Pputida.175,Feist_11661_P41,I18,iTru7_207_03,TGCTTCCA,iTru5_21_F,GGACATCA,Feist_11661,pool1,Pputida_PALE__HGL_Pputida_175 +1,Pputida_PALE__HGL_Pputida_176,Pputida.PALE.HGL.Pputida.176,Feist_11661_P41_diluted,K18,iTru7_207_04,GTCTAGGT,iTru5_22_F,TTGGTGCA,Feist_11661,pool2,Pputida_PALE__HGL_Pputida_176 +1,JM-Metabolic__GN0_2005,JM-Metabolic.GN0.2005,Feist_11661_P41,M18,iTru7_207_05,GTTCAACC,iTru5_23_F,AAGCGTTC,Feist_11661,pool1,JM-Metabolic__GN0_2005 +1,JM-Metabolic__GN0_2007,JM-Metabolic.GN0.2007,Feist_11661_P41,O18,iTru7_207_06,CGCAATCT,iTru5_24_F,ACTCTCCA,Feist_11661,pool2,JM-Metabolic__GN0_2007 +1,JM-Metabolic__GN0_2009,JM-Metabolic.GN0.2009,Feist_11661_P41,A20,iTru7_207_07,TTAAGCGG,iTru5_13_G,GAACCTTC,Feist_11661,pool1,JM-Metabolic__GN0_2009 +1,JM-Metabolic__GN0_2094,JM-Metabolic.GN0.2094,Feist_11661_P41_diluted,C20,iTru7_207_08,TGCTTGGT,iTru5_14_G,GGAACATG,Feist_11661,pool2,JM-Metabolic__GN0_2094 +1,JM-Metabolic__GN0_2099,JM-Metabolic.GN0.2099,Feist_11661_P41_diluted,E20,iTru7_207_09,ACACACTC,iTru5_15_G,GCCTATGT,Feist_11661,pool1,JM-Metabolic__GN0_2099 +1,JM-Metabolic__GN0_2148,JM-Metabolic.GN0.2148,Feist_11661_P41_diluted,G20,iTru7_207_10,CCACTTCT,iTru5_16_G,CCGTAACT,Feist_11661,pool2,JM-Metabolic__GN0_2148 +1,JM-Metabolic__GN0_2165,JM-Metabolic.GN0.2165,Feist_11661_P41_diluted,I20,iTru7_207_11,TTGGTCTC,iTru5_17_G,CGGATCAA,Feist_11661,pool1,JM-Metabolic__GN0_2165 +1,JM-Metabolic__GN0_2169,JM-Metabolic.GN0.2169,Feist_11661_P41,K20,iTru7_207_12,CTCATCAG,iTru5_18_G,CCACATTG,Feist_11661,pool2,JM-Metabolic__GN0_2169 +1,JM-Metabolic__GN0_2172,JM-Metabolic.GN0.2172,Feist_11661_P41,M20,iTru7_208_01,ATGACGTC,iTru5_19_G,CTCTATCG,Feist_11661,pool1,JM-Metabolic__GN0_2172 +1,JM-Metabolic__GN0_2175,JM-Metabolic.GN0.2175,Feist_11661_P41,O20,iTru7_208_02,AACCTTGG,iTru5_20_G,TGTGTCAG,Feist_11661,pool2,JM-Metabolic__GN0_2175 +1,JM-Metabolic__GN0_2183,JM-Metabolic.GN0.2183,Feist_11661_P41_diluted,A22,iTru7_208_03,GTCTTGCA,iTru5_21_G,CGCAACTA,Feist_11661,pool1,JM-Metabolic__GN0_2183 +1,JM-Metabolic__GN0_2215,JM-Metabolic.GN0.2215,Feist_11661_P41_diluted,C22,iTru7_208_04,CAAGTGCA,iTru5_22_G,GATCAGAC,Feist_11661,pool2,JM-Metabolic__GN0_2215 +1,JM-Metabolic__GN0_2254,JM-Metabolic.GN0.2254,Feist_11661_P41_diluted,E22,iTru7_208_05,TCCGAGTT,iTru5_23_G,ATTCCGCT,Feist_11661,pool1,JM-Metabolic__GN0_2254 +1,JM-Metabolic__GN0_2277,JM-Metabolic.GN0.2277,Feist_11661_P41_diluted,G22,iTru7_208_06,ACCTAAGG,iTru5_24_G,ATCCTTCC,Feist_11661,pool2,JM-Metabolic__GN0_2277 +1,JM-Metabolic__GN0_2290,JM-Metabolic.GN0.2290,Feist_11661_P41,I22,iTru7_208_07,TTGGACGT,iTru5_13_H,GCTTCACA,Feist_11661,pool1,JM-Metabolic__GN0_2290 +1,JM-Metabolic__GN0_2337,JM-Metabolic.GN0.2337,Feist_11661_P41_diluted,K22,iTru7_208_08,GATAGCGA,iTru5_14_H,CTTCGGTT,Feist_11661,pool2,JM-Metabolic__GN0_2337 +1,JM-Metabolic__GN0_2317,JM-Metabolic.GN0.2317,Feist_11661_P41_diluted,M22,iTru7_208_09,TTGGTGAG,iTru5_15_H,CATGGATC,Feist_11661,pool1,JM-Metabolic__GN0_2317 +1,JM-Metabolic__GN0_2354,JM-Metabolic.GN0.2354,Feist_11661_P41_diluted,O22,iTru7_208_10,AACTGGTG,iTru5_16_H,GTCAACAG,Feist_11661,pool2,JM-Metabolic__GN0_2354 +1,JM-Metabolic__GN0_2375,JM-Metabolic.GN0.2375,Feist_11661_P41_diluted,A24,iTru7_208_11,TAGCCGAA,iTru5_17_H,AATTCCGG,Feist_11661,pool1,JM-Metabolic__GN0_2375 +1,JM-Metabolic__GN0_2380,JM-Metabolic.GN0.2380,Feist_11661_P41_diluted,C24,iTru7_208_12,TGCGAACT,iTru5_18_H,GGCGAATA,Feist_11661,pool2,JM-Metabolic__GN0_2380 +1,JM-Metabolic__GN0_2393,JM-Metabolic.GN0.2393,Feist_11661_P41_diluted,E24,iTru7_209_01,GACTTAGG,iTru5_19_H,AGGAGGTT,Feist_11661,pool1,JM-Metabolic__GN0_2393 +1,JM-Metabolic__GN0_2404,JM-Metabolic.GN0.2404,Feist_11661_P41_diluted,G24,iTru7_209_02,ACACCAGT,iTru5_20_H,ACTCTGAG,Feist_11661,pool2,JM-Metabolic__GN0_2404 +1,5B,5B,Gerwick_tubes,I24,iTru7_209_03,CCTGATTG,iTru5_21_H,GCCTTCTT,Gerwick_6123,pool1,5B +1,6A,6A,Gerwick_tubes,K24,iTru7_209_04,TTGTGTGC,iTru5_22_H,TGGACCAT,Gerwick_6123,pool2,6A +1,BLANK_41_12G,BLANK.41.12G,Feist_11661_P41,M24,iTru7_209_05,TACCACAG,iTru5_23_H,GCATAGTC,Gerwick_6123,pool1,BLANK.41.12G +1,BLANK_41_12H,BLANK.41.12H,Feist_11661_P41,O24,iTru7_209_06,ATTCGAGG,iTru5_24_H,TACACACG,Feist_11661,pool2,BLANK.41.12H +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_14,Deoxyribose.PALE.ALE.MG1655.BOP27.4.14,Feist_11661_P42,B1,iTru7_209_07,GCACGTAA,iTru5_101_A,AACAACCG,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_BOP27_4_14 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_23,Deoxyribose.PALE.ALE.MG1655.BOP27.4.23,Feist_11661_P42,D1,iTru7_209_08,GTGTGACA,iTru5_102_A,AAGCCTGA,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_BOP27_4_23 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_48,Deoxyribose.PALE.ALE.MG1655.BOP27.4.48,Feist_11661_P42,F1,iTru7_209_09,CTGGTTCT,iTru5_103_A,AAGGACCA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_BOP27_4_48 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_6_21,Deoxyribose.PALE.ALE.MG1655.BOP27.6.21,Feist_11661_P42,H1,iTru7_209_10,ACTGTGTC,iTru5_104_A,ACAACGTG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_BOP27_6_21 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_6_35,Deoxyribose.PALE.ALE.MG1655.BOP27.6.35,Feist_11661_P42,J1,iTru7_209_11,CCATACGT,iTru5_105_A,ACGAACGA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_BOP27_6_35 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_13,Deoxyribose.PALE.ALE.MG1655.BOP27.10.13,Feist_11661_P42,L1,iTru7_209_12,GGTACTAC,iTru5_106_A,ACGTCCAA,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_BOP27_10_13 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_28,Deoxyribose.PALE.ALE.MG1655.BOP27.10.28,Feist_11661_P42,N1,iTru7_210_01,CAGTCCAA,iTru5_107_A,ACTGGTGT,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_BOP27_10_28 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_51,Deoxyribose.PALE.ALE.MG1655.BOP27.10.51,Feist_11661_P42,P1,iTru7_210_02,TCGTAGTC,iTru5_108_A,AGATCGTC,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_BOP27_10_51 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_19,Deoxyribose.PALE.ALE.MG1655.Lib4.18.19,Feist_11661_P42,B3,iTru7_210_03,TCGAGTGA,iTru5_109_A,AGCGAGAT,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_18_19 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_59,Deoxyribose.PALE.ALE.MG1655.Lib4.18.59,Feist_11661_P42,D3,iTru7_210_04,TGTAGCCA,iTru5_110_A,AGGATAGC,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_18_59 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_35,Deoxyribose.PALE.ALE.MG1655.Lib4.18.35,Feist_11661_P42,F3,iTru7_210_05,TGCAGGTA,iTru5_111_A,AGGTGTTG,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_18_35 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_16,Deoxyribose.PALE.ALE.MG1655.Lib4.20.16,Feist_11661_P42,H3,iTru7_210_06,CTAGGTGA,iTru5_112_A,AGTCTTGG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_20_16 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_43,Deoxyribose.PALE.ALE.MG1655.Lib4.20.43,Feist_11661_P42,J3,iTru7_210_07,CTCCATGT,iTru5_101_B,GGTTGGTA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_20_43 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_71,Deoxyribose.PALE.ALE.MG1655.Lib4.20.71,Feist_11661_P42,L3,iTru7_210_08,CTTACAGC,iTru5_102_B,GGAGGAAT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_20_71 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_16,Deoxyribose.PALE.ALE.MG1655.Lib4.22.16,Feist_11661_P42,N3,iTru7_210_09,CGTATTCG,iTru5_103_B,GTAAGGTG,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_22_16 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_28,Deoxyribose.PALE.ALE.MG1655.Lib4.22.28,Feist_11661_P42,P3,iTru7_210_10,ATTCTGGC,iTru5_104_B,GGTGTACA,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_22_28 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_52,Deoxyribose.PALE.ALE.MG1655.Lib4.22.52,Feist_11661_P42,B5,iTru7_210_11,TACCAGGA,iTru5_105_B,GGATGTAG,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_22_52 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_9,Deoxyribose.PALE.ALE.MG1655.Lib4.24.9,Feist_11661_P42,D5,iTru7_210_12,TACATCGG,iTru5_106_B,GTCCTGTT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_24_9 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_24,Deoxyribose.PALE.ALE.MG1655.Lib4.24.24,Feist_11661_P42,F5,iTru7_301_01,GTGGTGTT,iTru5_107_B,GTACCACA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_24_24 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_52,Deoxyribose.PALE.ALE.MG1655.Lib4.24.52,Feist_11661_P42,H5,iTru7_301_02,CGCATGAT,iTru5_108_B,GATCTCAG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_24_52 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_6,Deoxyribose.PALE.ALE.MG1655.Lib4.26.6,Feist_11661_P42,J5,iTru7_301_03,AGTCGACA,iTru5_109_B,GAGCTCTA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_26_6 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_27,Deoxyribose.PALE.ALE.MG1655.Lib4.26.27,Feist_11661_P42,L5,iTru7_301_04,GTGAGCTT,iTru5_110_B,TACTAGCG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_26_27 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_69,Deoxyribose.PALE.ALE.MG1655.Lib4.26.69,Feist_11661_P42,N5,iTru7_301_05,GACATTCC,iTru5_111_B,GCACACAA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_26_69 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_13,Deoxyribose.PALE.ALE.MG1655.Lib4.28.13,Feist_11661_P42,P5,iTru7_301_06,AGTTCGTC,iTru5_112_B,GAATCACC,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_28_13 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_28,Deoxyribose.PALE.ALE.MG1655.Lib4.28.28,Feist_11661_P42,B7,iTru7_301_07,TAATGCCG,iTru5_101_C,AACAGCGA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_28_28 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_53,Deoxyribose.PALE.ALE.MG1655.Lib4.28.53,Feist_11661_P42,D7,iTru7_301_08,CGACCATT,iTru5_102_C,AAGCGACT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_28_53 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_7,Deoxyribose.PALE.ALE.MG1655.Lib4.30.7,Feist_11661_P42,F7,iTru7_301_09,CTGAAGCT,iTru5_103_C,AAGGCGTA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_30_7 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_22,Deoxyribose.PALE.ALE.MG1655.Lib4.30.22,Feist_11661_P42,H7,iTru7_301_10,TTGAGGCA,iTru5_104_C,ACACCGAT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_30_22 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_60,Deoxyribose.PALE.ALE.MG1655.Lib4.30.60,Feist_11661_P42,J7,iTru7_301_11,GATCGAGT,iTru5_105_C,ACGAATCC,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_30_60 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_6,Deoxyribose.PALE.ALE.MG1655.Lib4.32.6,Feist_11661_P42,L7,iTru7_301_12,ATACTCCG,iTru5_106_C,ACTACGGT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_32_6 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_20,Deoxyribose.PALE.ALE.MG1655.Lib4.32.20,Feist_11661_P42,N7,iTru7_302_01,AAGTCCGT,iTru5_107_C,AGAAGCCT,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_32_20 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_56,Deoxyribose.PALE.ALE.MG1655.Lib4.32.56,Feist_11661_P42,P7,iTru7_302_02,TAGCGTCT,iTru5_108_C,AGATTGCG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_32_56 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.1.24,Feist_11661_P42,B9,iTru7_302_03,TGACGCAT,iTru5_109_C,AGCGTGTA,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_24 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.1.57,Feist_11661_P42,D9,iTru7_302_04,AGCGTGTT,iTru5_110_C,AGGCTGAA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_57 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.1.69,Feist_11661_P42,F9,iTru7_302_05,TGCACCAA,iTru5_111_C,AGGTTCCT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_69 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.3.23,Feist_11661_P42,H9,iTru7_302_06,ATCACACG,iTru5_112_C,AGTGACCT,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.3.50,Feist_11661_P42,J9,iTru7_302_07,ATGCCTGT,iTru5_101_D,GGTTAGCT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_50 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.3.61,Feist_11661_P42,L9,iTru7_302_08,ACCTGACT,iTru5_102_D,GTAGCGTA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_61 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.5.22,Feist_11661_P42,N9,iTru7_302_09,GCTTCGAA,iTru5_103_D,GGACTACT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_22 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.5.36,Feist_11661_P42,P9,iTru7_302_10,CGGTCATA,iTru5_104_D,TGGTTCGA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_36 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.5.46,Feist_11661_P42,B11,iTru7_302_11,GTTAGACG,iTru5_105_D,GGAGTCTT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_46 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.7.23,Feist_11661_P42,D11,iTru7_302_12,TCTAACGC,iTru5_106_D,GGATTCAC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.7.41,Feist_11661_P42,F11,iTru7_303_01,ATAGCGGT,iTru5_107_D,TCGGATTC,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_41 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.7.51,Feist_11661_P42,H11,iTru7_303_02,GGACCTAT,iTru5_108_D,GAGCAATC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_51 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.17.25,Feist_11661_P42,J11,iTru7_303_03,CGATGCTT,iTru5_109_D,GATCCACT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.17.58,Feist_11661_P42,L11,iTru7_303_04,GAGCTTGT,iTru5_110_D,GAAGACTG,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_58 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.17.64,Feist_11661_P42,N11,iTru7_303_05,GTGAAGTG,iTru5_111_D,GCCACTTA,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_64 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.19.25,Feist_11661_P42,P11,iTru7_303_06,GAGTGGTT,iTru5_112_D,TCCATTGC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.19.55,Feist_11661_P42,B13,iTru7_303_07,TGATACGC,iTru5_101_E,AACAGTCC,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_55 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.19.63,Feist_11661_P42,D13,iTru7_303_08,AGCAGATG,iTru5_102_E,AAGCTCAC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_63 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.21.23,Feist_11661_P42,F13,iTru7_303_09,CCAGTGTT,iTru5_103_E,AAGTCCTC,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.21.46,Feist_11661_P42,H13,iTru7_303_10,ATTCCTCC,iTru5_104_E,ACACTCTG,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_46 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.21.51,Feist_11661_P42,J13,iTru7_303_11,CTAACTCG,iTru5_105_E,ACGGTACA,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_51 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.29.25,Feist_11661_P42,L13,iTru7_303_12,GATGAGAC,iTru5_106_E,ACTCCTAC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.29.49,Feist_11661_P42,N13,iTru7_304_01,TCAGGCTT,iTru5_107_E,AGAGGATG,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_49 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.29.57,Feist_11661_P42,P13,iTru7_304_02,GTTCTCGT,iTru5_108_E,AGCCGTAA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_57 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.31.24,Feist_11661_P42,B15,iTru7_304_03,ATCGATCG,iTru5_109_E,AGCTTCAG,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_24 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.31.42,Feist_11661_P42,D15,iTru7_304_04,CCTCAGTT,iTru5_110_E,AGGTAGGA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_42 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.31.62,Feist_11661_P42,F15,iTru7_304_05,ACTGCTAG,iTru5_111_E,AGTACACG,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_62 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.33.21,Feist_11661_P42,H15,iTru7_304_06,TCCGTGAA,iTru5_112_E,AGTGCATC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_21 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.33.41,Feist_11661_P42,J15,iTru7_304_07,GGATTCGT,iTru5_101_F,TTGGACTG,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_41 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.33.50,Feist_11661_P42,L15,iTru7_304_08,GGTCAGAT,iTru5_102_F,GTCGATTG,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_50 +1,JM-Metabolic__GN02514,JM-Metabolic.GN02514,Feist_11661_P42,N15,iTru7_304_09,TCGTGGAT,iTru5_103_F,GGCATTCT,Feist_11661,pool1,JM-Metabolic__GN02514 +1,JM-Metabolic__GN02529,JM-Metabolic.GN02529,Feist_11661_P42_diluted,P15,iTru7_304_10,CGTGTGTA,iTru5_104_F,TGGTATCC,Feist_11661,pool2,JM-Metabolic__GN02529 +1,JM-Metabolic__GN02531,JM-Metabolic.GN02531,Feist_11661_P42_diluted,B17,iTru7_304_11,GTGTCTGA,iTru5_105_F,GGCAAGTT,Feist_11661,pool1,JM-Metabolic__GN02531 +1,JM-Metabolic__GN02567,JM-Metabolic.GN02567,Feist_11661_P42,D17,iTru7_304_12,GAATCGTG,iTru5_106_F,GTCTGAGT,Feist_11661,pool2,JM-Metabolic__GN02567 +1,JM-Metabolic__GN02590,JM-Metabolic.GN02590,Feist_11661_P42_diluted,F17,iTru7_305_01,GCGATAGT,iTru5_107_F,TCTACGCA,Feist_11661,pool1,JM-Metabolic__GN02590 +1,JM-Metabolic__GN02657,JM-Metabolic.GN02657,Feist_11661_P42_diluted,H17,iTru7_305_02,GGCTATTG,iTru5_108_F,GAGGCATT,Feist_11661,pool2,JM-Metabolic__GN02657 +1,JM-Metabolic__GN02748,JM-Metabolic.GN02748,Feist_11661_P42,J17,iTru7_305_03,AGTTACGG,iTru5_109_F,GCTAAGGA,Feist_11661,pool1,JM-Metabolic__GN02748 +1,JM-Metabolic__GN02766,JM-Metabolic.GN02766,Feist_11661_P42_diluted,L17,iTru7_305_04,CGTACGAA,iTru5_110_F,GCCAGAAT,Feist_11661,pool2,JM-Metabolic__GN02766 +1,JM-Metabolic__GN02769,JM-Metabolic.GN02769,Feist_11661_P42_diluted,N17,iTru7_305_05,ACCACGAT,iTru5_111_F,TAAGTGGC,Feist_11661,pool1,JM-Metabolic__GN02769 +1,JM-Metabolic__GN02787,JM-Metabolic.GN02787,Feist_11661_P42_diluted,P17,iTru7_305_06,GATTACCG,iTru5_112_F,GCAATGAG,Feist_11661,pool2,JM-Metabolic__GN02787 +1,JM-Metabolic__GN03132,JM-Metabolic.GN03132,Feist_11661_P42,B19,iTru7_305_07,GAGATACG,iTru5_101_G,AACTGAGG,Feist_11661,pool1,JM-Metabolic__GN03132 +1,JM-Metabolic__GN03218,JM-Metabolic.GN03218,Feist_11661_P42_diluted,D19,iTru7_305_08,CGACGTTA,iTru5_102_G,AAGGAAGG,Feist_11661,pool2,JM-Metabolic__GN03218 +1,JM-Metabolic__GN03252,JM-Metabolic.GN03252,Feist_11661_P42_diluted,F19,iTru7_305_09,GAGATGTC,iTru5_103_G,AATGGTCG,Feist_11661,pool1,JM-Metabolic__GN03252 +1,JM-Metabolic__GN03409,JM-Metabolic.GN03409,Feist_11661_P42_diluted,H19,iTru7_305_10,GATTGGAG,iTru5_104_G,ACAGCAAG,Feist_11661,pool2,JM-Metabolic__GN03409 +1,JM-Metabolic__GN04014,JM-Metabolic.GN04014,Feist_11661_P42_diluted,J19,iTru7_305_11,GCAATTCG,iTru5_105_G,ACGTATGG,Feist_11661,pool1,JM-Metabolic__GN04014 +1,JM-Metabolic__GN04094,JM-Metabolic.GN04094,Feist_11661_P42_diluted,L19,iTru7_305_12,CGTCAATG,iTru5_106_G,ACTGCACT,Feist_11661,pool2,JM-Metabolic__GN04094 +1,JM-Metabolic__GN04255,JM-Metabolic.GN04255,Feist_11661_P42_diluted,N19,iTru7_401_01,ATGCACGA,iTru5_107_G,AGAGTCCA,Feist_11661,pool1,JM-Metabolic__GN04255 +1,JM-Metabolic__GN04306,JM-Metabolic.GN04306,Feist_11661_P42_diluted,P19,iTru7_401_02,ATCGCCAT,iTru5_108_G,AGCCTATC,Feist_11661,pool2,JM-Metabolic__GN04306 +1,JM-Metabolic__GN04428,JM-Metabolic.GN04428,Feist_11661_P42_diluted,B21,iTru7_401_03,TCTCGCAA,iTru5_109_G,AGGAACAC,Feist_11661,pool1,JM-Metabolic__GN04428 +1,JM-Metabolic__GN04488,JM-Metabolic.GN04488,Feist_11661_P42_diluted,D21,iTru7_401_04,ACGACAGA,iTru5_110_G,AGGTCTGT,Feist_11661,pool2,JM-Metabolic__GN04488 +1,JM-Metabolic__GN04540,JM-Metabolic.GN04540,Feist_11661_P42_diluted,F21,iTru7_401_05,TTACGGCT,iTru5_111_G,AGTATGCC,Feist_11661,pool1,JM-Metabolic__GN04540 +1,JM-Metabolic__GN04563,JM-Metabolic.GN04563,Feist_11661_P42_diluted,H21,iTru7_401_06,GAGGACTT,iTru5_112_G,AGTTCGCA,Feist_11661,pool2,JM-Metabolic__GN04563 +1,JM-Metabolic__GN04612,JM-Metabolic.GN04612,Feist_11661_P42_diluted,J21,iTru7_401_07,GGCATACT,iTru5_101_H,TGGAAGCA,Feist_11661,pool1,JM-Metabolic__GN04612 +1,JM-Metabolic__GN04665,JM-Metabolic.GN04665,Feist_11661_P42_diluted,L21,iTru7_401_08,CGTAGGTT,iTru5_102_H,GTCAGTCA,Feist_11661,pool2,JM-Metabolic__GN04665 +1,JM-Metabolic__GN04682,JM-Metabolic.GN04682,Feist_11661_P42_diluted,N21,iTru7_401_09,ATATGCGC,iTru5_103_H,GTAACCGA,Feist_11661,pool1,JM-Metabolic__GN04682 +1,JM-Metabolic__GN05002,JM-Metabolic.GN05002,Feist_11661_P42_diluted,P21,iTru7_401_10,GGATGTAG,iTru5_104_H,GTTATGGC,Feist_11661,pool2,JM-Metabolic__GN05002 +1,JM-Metabolic__GN05109,JM-Metabolic.GN05109,Feist_11661_P42_diluted,B23,iTru7_401_11,CCTGTCAT,iTru5_105_H,GTAAGCAC,Feist_11661,pool1,JM-Metabolic__GN05109 +1,JM-Metabolic__GN05128,JM-Metabolic.GN05128,Feist_11661_P42_diluted,D23,iTru7_401_12,TGCTCATG,iTru5_106_H,GGAATGTC,Feist_11661,pool2,JM-Metabolic__GN05128 +1,JM-Metabolic__GN05367,JM-Metabolic.GN05367,Feist_11661_P42_diluted,F23,iTru7_402_01,TGAAGACG,iTru5_107_H,GAGAAGGT,Feist_11661,pool1,JM-Metabolic__GN05367 +1,JM-Metabolic__GN05377,JM-Metabolic.GN05377,Feist_11661_P42_diluted,H23,iTru7_402_02,GTTACGCA,iTru5_108_H,GAGTAGAG,Feist_11661,pool2,JM-Metabolic__GN05377 +1,7A,7A,Gerwick_tubes,J23,iTru7_402_03,ACTCAGAC,iTru5_109_H,GCATTGGT,Gerwick_6123,pool1,7A +1,8A,8A,Gerwick_tubes,L23,iTru7_402_04,GTCCACAT,iTru5_110_H,TCCAGCAA,Gerwick_6123,pool2,8A +1,BLANK_42_12G,BLANK.42.12G,Feist_11661_P42,N23,iTru7_402_05,CGCTAGTA,iTru5_111_H,GAATCCGT,Feist_11661,pool1,BLANK.42.12G +1,BLANK_42_12H,BLANK.42.12H,Feist_11661_P42,P23,iTru7_402_06,GAATCCGA,iTru5_112_H,TACATCGG,Feist_11661,pool2,BLANK.42.12H +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0326,Feist_11661_P43,B2,iTru7_402_07,GAGACGAT,iTru5_113_A,ATAACGCC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0326 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0327,Feist_11661_P43,D2,iTru7_402_08,TAAGTGGC,iTru5_114_A,ATGACAGG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0327 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0328,Feist_11661_P43,F2,iTru7_402_09,ACTGAGGT,iTru5_115_A,CAACACAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0328 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0329,Feist_11661_P43,H2,iTru7_402_10,TGTACCGT,iTru5_116_A,CACCAGTT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0329 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0330,Feist_11661_P43,J2,iTru7_402_11,AGCAAGCA,iTru5_117_A,CAGAGTGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0330 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0352,Feist_11661_P43,L2,iTru7_402_12,TCTCGTGT,iTru5_118_A,CCGATGTA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0352 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0353,Feist_11661_P43,N2,iTru7_115_01,CAAGGTCT,iTru5_119_A,CCTTCCAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0353 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0354,Feist_11661_P43,P2,iTru7_115_02,TAGACGTG,iTru5_120_A,CGGTAATC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0354 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0355,Feist_11661_P43,B4,iTru7_115_03,TGAGCTAG,iTru5_121_A,CTAGGTTG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0355 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0356,Feist_11661_P43,D4,iTru7_115_04,CTGACACA,iTru5_122_A,CTCGGTAA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0356 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0357,Feist_11661_P43,F4,iTru7_115_05,ACGGTCTT,iTru5_123_A,CTGTGGTA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0357 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0364,Feist_11661_P43,H4,iTru7_115_06,GCTGTTGT,iTru5_124_A,GTACGATC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0364 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0366,Feist_11661_P43,J4,iTru7_115_07,CACTAGCT,iTru5_113_B,TCTGTCGT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0366 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0367,Feist_11661_P43,L4,iTru7_115_08,TGGTACAG,iTru5_114_B,GAATGGCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0367 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0368,Feist_11661_P43,N4,iTru7_115_09,AGCACTTC,iTru5_115_B,GTGTGTTC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0368 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0369,Feist_11661_P43,P4,iTru7_115_10,GCATACAG,iTru5_116_B,GGTTGAAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0369 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0370,Feist_11661_P43,B6,iTru7_115_11,CTTAGGAC,iTru5_117_B,GGCTCAAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0370 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0371,Feist_11661_P43,D6,iTru7_211_01,GCTTCTTG,iTru5_118_B,TTCGCCAT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0371 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0372,Feist_11661_P43,F6,iTru7_101_01,ACGTTACC,iTru5_119_B,GTCCTTGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0372 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0373,Feist_11661_P43,H6,iTru7_101_02,CTGTGTTG,iTru5_120_B,TAACGTCG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0373 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0374,Feist_11661_P43,J6,iTru7_101_03,TGAGGTGT,iTru5_121_B,GAGACCAA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0374 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0375,Feist_11661_P43,L6,iTru7_101_04,GATCCATG,iTru5_122_B,GATCAAGG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0375 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0376,Feist_11661_P43,N6,iTru7_101_05,GCCTATCA,iTru5_123_B,GCAACCAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0376 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0377,Feist_11661_P43,P6,iTru7_101_06,AACAACCG,iTru5_124_B,AAGGAGAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0377 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0378,Feist_11661_P43,B8,iTru7_101_07,ACTCGTTG,iTru5_113_C,ATCGGAGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0378 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0380,Feist_11661_P43,D8,iTru7_101_08,CCTATGGT,iTru5_114_C,ATGCGCTT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0380 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0381,Feist_11661_P43,F8,iTru7_101_09,TGTACACC,iTru5_115_C,CAACCGTA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0381 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0382,Feist_11661_P43,H8,iTru7_101_10,GTATGCTG,iTru5_116_C,CACTTCAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0382 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0383,Feist_11661_P43,J8,iTru7_101_11,TGATGTCC,iTru5_117_C,CAGCTAGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0383 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0384,Feist_11661_P43,L8,iTru7_101_12,GTCCTTCT,iTru5_118_C,CCGTTATG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0384 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0385,Feist_11661_P43,N8,iTru7_102_01,ATAAGGCG,iTru5_119_C,CGAACAAC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0385 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0386,Feist_11661_P43,P8,iTru7_102_02,CTTACCTG,iTru5_120_C,CGTAGATG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0386 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0387,Feist_11661_P43,B10,iTru7_102_03,CGTTGCAA,iTru5_121_C,CTATGCCT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0387 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0388,Feist_11661_P43,D10,iTru7_102_04,GATTCAGC,iTru5_122_C,CTGATGAG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0388 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0389,Feist_11661_P43,F10,iTru7_102_05,TCACGTTC,iTru5_123_C,CTTCCTTC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0389 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0390,Feist_11661_P43,H10,iTru7_102_06,TGTGCGTT,iTru5_124_C,GTCTCATC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0390 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0391,Feist_11661_P43,J10,iTru7_102_07,TAGTTGCG,iTru5_113_D,GCGCATAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0391 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0392,Feist_11661_P43,L10,iTru7_102_08,AAGAGCCA,iTru5_114_D,GAAGATCC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0392 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0393,Feist_11661_P43,N10,iTru7_102_09,ACAGCTCA,iTru5_115_D,GTTGGCAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0393 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0394,Feist_11661_P43,P10,iTru7_102_10,GTTAAGGC,iTru5_116_D,GTGAATGG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0394 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0395,Feist_11661_P43,B12,iTru7_102_11,AAGCCACA,iTru5_117_D,GTATCGAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0395 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0396,Feist_11661_P43,D12,iTru7_102_12,ACACGGTT,iTru5_118_D,TGCAAGAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0396 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0397,Feist_11661_P43,F12,iTru7_103_01,CAGCGATT,iTru5_119_D,GAGTGTGT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0397 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0398,Feist_11661_P43,H12,iTru7_103_02,TAGTGACC,iTru5_120_D,TAAGCGCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0398 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0399,Feist_11661_P43,J12,iTru7_103_03,CGAGACTA,iTru5_121_D,TAGCAGGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0399 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0400,Feist_11661_P43,L12,iTru7_103_04,GACATGGT,iTru5_122_D,GACTACGA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0400 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0401,Feist_11661_P43,N12,iTru7_103_05,GCATGTCT,iTru5_123_D,GACGTCAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0401 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0402,Feist_11661_P43,P12,iTru7_103_06,ACTCCATC,iTru5_124_D,AAGAGGCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0402 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0403,Feist_11661_P43,B14,iTru7_103_07,TGTGACTG,iTru5_113_E,ATCGTCTC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0403 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0404,Feist_11661_P43,D14,iTru7_103_08,CGAAGAAC,iTru5_114_E,ATGGCGAT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0404 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0405,Feist_11661_P43,F14,iTru7_103_09,GGTGTCTT,iTru5_115_E,CAAGAAGC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0405 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0406,Feist_11661_P43,H14,iTru7_103_10,AAGAAGGC,iTru5_116_E,CAGAACTG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0406 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0407,Feist_11661_P43,J14,iTru7_103_11,AGGTTCGA,iTru5_117_E,CAGGTAAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0407 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0408,Feist_11661_P43,L14,iTru7_103_12,CATGTTCC,iTru5_118_E,CCTACCTA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0408 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0409,Feist_11661_P43,N14,iTru7_104_01,GTGCCATA,iTru5_119_E,CGAAGTCA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0409 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0417,Feist_11661_P43,P14,iTru7_104_02,CCTTGTAG,iTru5_120_E,CGTCTTCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0417 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0418,Feist_11661_P43,B16,iTru7_104_03,GCTGGATT,iTru5_121_E,CTCAAGCT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0418 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0419,Feist_11661_P43,D16,iTru7_104_04,TAACGAGG,iTru5_122_E,CTGCCATA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0419 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0420,Feist_11661_P43,F16,iTru7_104_05,ATGGTTGC,iTru5_123_E,CTTGCTAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0420 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0421,Feist_11661_P43,H16,iTru7_104_06,CCTATACC,iTru5_124_E,GTCTGCAA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0421 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0473,Feist_11661_P43,J16,iTru7_104_07,TTAGGTCG,iTru5_113_F,GCTACTCT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0473 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0474,Feist_11661_P43,L16,iTru7_104_08,GCAAGATC,iTru5_114_F,TACAGAGC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0474 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0483,Feist_11661_P43,N16,iTru7_104_09,AGAGCCTT,iTru5_115_F,GGTCGTAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0483 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0484,Feist_11661_P43,P16,iTru7_104_10,GCAATGGA,iTru5_116_F,GTCGTTAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0484 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0485,Feist_11661_P43,B18,iTru7_104_11,CTGGAGTA,iTru5_117_F,TTCACGGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0485 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0486,Feist_11661_P43,D18,iTru7_104_12,GAACATCG,iTru5_118_F,TGCTTGCT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0486 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0516,Feist_11661_P43,F18,iTru7_105_01,GCACAACT,iTru5_119_F,TCTTACGG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0516 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0517,Feist_11661_P43,H18,iTru7_105_02,TTCTCTCG,iTru5_120_F,TCCTCATG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0517 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0518,Feist_11661_P43,J18,iTru7_105_03,AACGGTCA,iTru5_121_F,GATGTCGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0518 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0519,Feist_11661_P43,L18,iTru7_105_04,ACAGACCT,iTru5_122_F,GAAGTGCT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0519 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0520,Feist_11661_P43,N18,iTru7_105_05,TCTCTTCC,iTru5_123_F,TCACTCGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0520 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0521,Feist_11661_P43,P18,iTru7_105_06,AGTGTTGG,iTru5_124_F,ACGCAGTA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0521 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0522,Feist_11661_P43,B20,iTru7_105_07,TGGCATGT,iTru5_113_G,ATCTCCTG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0522 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0523,Feist_11661_P43,D20,iTru7_105_08,AGAAGCGT,iTru5_114_G,ATGTGGAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0523 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0524,Feist_11661_P43,F20,iTru7_105_09,AGCGGAAT,iTru5_115_G,CAAGCCAA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0524 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0525,Feist_11661_P43,H20,iTru7_105_10,TAACCGGT,iTru5_116_G,CAGACGTT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0525 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624,JM-MEC.Staphylococcus.aureusstrain.BERTI-R08624,Feist_11661_P43,J20,iTru7_105_11,CATGGAAC,iTru5_117_G,CATACTCG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R08624 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704,JM-MEC.Staphylococcus.aureusstrain.BERTI-R08704,Feist_11661_P43,L20,iTru7_105_12,ATGGTCCA,iTru5_118_G,CCTGTCAA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R08704 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727,JM-MEC.Staphylococcus.aureusstrain.BERTI-R10727,Feist_11661_P43,N20,iTru7_106_01,CTTCTGAG,iTru5_119_G,CGAGTTAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R10727 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11044,Feist_11661_P43,P20,iTru7_106_02,AACCGAAG,iTru5_120_G,CTAACCTG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R11044 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11078,Feist_11661_P43,B22,iTru7_106_03,TTCGTACC,iTru5_121_G,CTCCTAGT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R11078 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11101,Feist_11661_P43,D22,iTru7_106_04,CTGTTAGG,iTru5_122_G,CTGTACCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R11101 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11102,Feist_11661_P43,F22,iTru7_106_05,CACAAGTC,iTru5_123_G,GCTACAAC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R11102 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11103,Feist_11661_P43,H22,iTru7_106_06,TCTTGACG,iTru5_124_G,GTTCTTCG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R11103 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11135,Feist_11661_P43,J22,iTru7_106_07,CGTCTTGT,iTru5_113_H,GAGAGTAC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R11135 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11153,Feist_11661_P43,L22,iTru7_106_08,CGTGATCA,iTru5_114_H,GACACAGT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R11153 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11154,Feist_11661_P43,N22,iTru7_106_09,CCAAGTTG,iTru5_115_H,TTGCTTGG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R11154 +1,JM-Metabolic__GN02424,JM-Metabolic.GN02424,Feist_11661_P43,P22,iTru7_106_10,GTACCTTG,iTru5_116_H,GTAGTACC,Feist_11661,pool2,JM-Metabolic__GN02424 +1,JM-Metabolic__GN02446,JM-Metabolic.GN02446,Feist_11661_P43,B24,iTru7_106_11,GACTATGC,iTru5_117_H,TTCGGCTA,Feist_11661,pool1,JM-Metabolic__GN02446 +1,JM-Metabolic__GN02449,JM-Metabolic.GN02449,Feist_11661_P43,D24,iTru7_106_12,TGGATCAC,iTru5_118_H,TGCACTTG,Feist_11661,pool2,JM-Metabolic__GN02449 +1,JM-Metabolic__GN02487,JM-Metabolic.GN02487,Feist_11661_P43_diluted,F24,iTru7_107_01,CTCTGGTT,iTru5_119_H,TAGAACGC,Feist_11661,pool1,JM-Metabolic__GN02487 +1,JM-Metabolic__GN02501,JM-Metabolic.GN02501,Feist_11661_P43,H24,iTru7_107_02,GTTCATGG,iTru5_120_H,GATTGTCC,Feist_11661,pool2,JM-Metabolic__GN02501 +1,ISB,ISB,Gerwick_tubes,J24,iTru7_107_03,GCTGTAAG,iTru5_121_H,GATGCTAC,Gerwick_6123,pool1,ISB +1,GFR,GFR,Gerwick_tubes,L24,iTru7_107_04,GTCGAAGA,iTru5_122_H,GAACGGTT,Gerwick_6123,pool2,GFR +1,BLANK_43_12G,BLANK.43.12G,Feist_11661_P43,N24,iTru7_107_05,GAGCTCAA,iTru5_123_H,CTCTTGTC,Feist_11661,pool1,BLANK.43.12G +1,BLANK_43_12H,BLANK.43.12H,Feist_11661_P43,P24,iTru7_107_06,TGAACCTG,iTru5_124_H,AACGCCTT,Feist_11661,pool2,BLANK.43.12H +1,RMA_KHP_rpoS_Mage_Q97D,RMA.KHP.rpoS.Mage.Q97D,,,12,CTTGTAAT,U1,TATAGCGT,Feist_11661,pool1,RMA_KHP_rpoS Mage Q97D +1,RMA_KHP_rpoS_Mage_Q97L,RMA.KHP.rpoS.Mage.Q97L,,,13,AGTCAAAT,U1,TATAGCGT,Feist_11661,pool2,RMA_KHP_rpoS Mage Q97L +1,RMA_KHP_rpoS_Mage_Q97N,RMA.KHP.rpoS.Mage.Q97N,,,14,AGTTCCAT,U1,TATAGCGT,Feist_11661,pool1,RMA_KHP_rpoS Mage Q97N +1,RMA_KHP_rpoS_Mage_Q97E,RMA.KHP.rpoS.Mage.Q97E,,,15,ATGTCAAT,U1,TATAGCGT,Feist_11661,pool2,RMA_KHP_rpoS Mage Q97E +1,JBI_KHP_HGL_021,JBI.KHP.HGL.021,,,1,ATCACGAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_021 +1,JBI_KHP_HGL_022,JBI.KHP.HGL.022,,,2,CGATGTAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_022 +1,JBI_KHP_HGL_023,JBI.KHP.HGL.023,,,3,TTAGGCAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_023 +1,JBI_KHP_HGL_024,JBI.KHP.HGL.024,,,4,TGACCAAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_024 +1,JBI_KHP_HGL_025,JBI.KHP.HGL.025,,,5,ACAGTGAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_025 +1,JBI_KHP_HGL_026,JBI.KHP.HGL.026,,,6,GCCAATAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_026 +1,JBI_KHP_HGL_027,JBI.KHP.HGL.027,,,7,CAGATCAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_027 +1,JBI_KHP_HGL_028_Amitesh_soxR,JBI.KHP.HGL.028.Amitesh.soxR,,,8,ACTTGAAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_028_Amitesh_soxR +1,JBI_KHP_HGL_029_Amitesh_oxyR,JBI.KHP.HGL.029.Amitesh.oxyR,,,9,GATCAGAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_029_Amitesh_oxyR +1,JBI_KHP_HGL_030_Amitesh_soxR_oxyR,JBI.KHP.HGL.030.Amitesh.soxR.oxyR,,,10,TAGCTTAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_030_Amitesh_soxR_oxyR +1,JBI_KHP_HGL_031_Amitesh_rpoS,JBI.KHP.HGL.031.Amitesh.rpoS,,,11,GGCTACAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_031_Amitesh_rpoS +1,BLANK1_1A,BLANK1.1A,NYU_BMS_Melanoma_13059_P1,A1,iTru7_107_09,GCCTTGTT,iTru5_01_A,ACCGACAA,NYU_BMS_Melanoma_13059,pool2,BLANK1.1A +1,BLANK1_1B,BLANK1.1B,NYU_BMS_Melanoma_13059_P1,C1,iTru7_107_10,AACTTGCC,iTru5_02_A,CTTCGCAA,NYU_BMS_Melanoma_13059,pool1,BLANK1.1B +1,BLANK1_1C,BLANK1.1C,NYU_BMS_Melanoma_13059_P1,E1,iTru7_107_11,CAATGTGG,iTru5_03_A,AACACCAC,NYU_BMS_Melanoma_13059,pool2,BLANK1.1C +1,BLANK1_1D,BLANK1.1D,NYU_BMS_Melanoma_13059_P1,G1,iTru7_107_12,AAGGCTGA,iTru5_04_A,CGTATCTC,NYU_BMS_Melanoma_13059,pool1,BLANK1.1D +1,BLANK1_1E,BLANK1.1E,NYU_BMS_Melanoma_13059_P1,I1,iTru7_108_01,TTACCGAG,iTru5_05_A,GGTACGAA,NYU_BMS_Melanoma_13059,pool2,BLANK1.1E +1,BLANK1_1F,BLANK1.1F,NYU_BMS_Melanoma_13059_P1,K1,iTru7_108_02,GTCCTAAG,iTru5_06_A,CGATCGAT,NYU_BMS_Melanoma_13059,pool1,BLANK1.1F +1,BLANK1_1G,BLANK1.1G,NYU_BMS_Melanoma_13059_P1,M1,iTru7_108_03,GAAGGTTC,iTru5_07_A,AAGACACC,NYU_BMS_Melanoma_13059,pool2,BLANK1.1G +1,BLANK1_1H,BLANK1.1H,NYU_BMS_Melanoma_13059_P1,O1,iTru7_108_04,GAAGAGGT,iTru5_08_A,CATCTGCT,NYU_BMS_Melanoma_13059,pool1,BLANK1.1H +1,AP581451B02,AP581451B02,NYU_BMS_Melanoma_13059_P1,A3,iTru7_108_05,TCTGAGAG,iTru5_09_A,CTCTCAGA,NYU_BMS_Melanoma_13059,pool2,AP581451B02 +1,EP256645B01,EP256645B01,NYU_BMS_Melanoma_13059_P1,C3,iTru7_108_06,ACCGCATA,iTru5_10_A,TCGTCTGA,NYU_BMS_Melanoma_13059,pool1,EP256645B01 +1,EP112567B02,EP112567B02,NYU_BMS_Melanoma_13059_P1,E3,iTru7_108_07,GAAGTACC,iTru5_11_A,CAATAGCC,NYU_BMS_Melanoma_13059,pool2,EP112567B02 +1,EP337425B01,EP337425B01,NYU_BMS_Melanoma_13059_P1,G3,iTru7_108_08,CAGGTATC,iTru5_12_A,CATTCGTC,NYU_BMS_Melanoma_13059,pool1,EP337425B01 +1,LP127890A01,LP127890A01,NYU_BMS_Melanoma_13059_P1,I3,iTru7_108_09,TCTCTAGG,iTru5_01_B,AGTGGCAA,NYU_BMS_Melanoma_13059,pool2,LP127890A01 +1,EP159692B04,EP159692B04,NYU_BMS_Melanoma_13059_P1,K3,iTru7_108_10,AAGCACTG,iTru5_02_B,GTGGTATG,NYU_BMS_Melanoma_13059,pool1,EP159692B04 +1,EP987683A01,EP987683A01,NYU_BMS_Melanoma_13059_P1,M3,iTru7_108_11,CCAAGCAA,iTru5_03_B,TGAGCTGT,NYU_BMS_Melanoma_13059,pool2,EP987683A01 +1,AP959450A03,AP959450A03,NYU_BMS_Melanoma_13059_P1,O3,iTru7_108_12,TGTTCGAG,iTru5_04_B,CGTCAAGA,NYU_BMS_Melanoma_13059,pool1,AP959450A03 +1,SP464350A04,SP464350A04,NYU_BMS_Melanoma_13059_P1,A5,iTru7_109_01,CTCGTCTT,iTru5_05_B,AAGCATCG,NYU_BMS_Melanoma_13059,pool2,SP464350A04 +1,C9,C9,NYU_BMS_Melanoma_13059_P1,C5,iTru7_109_02,CGAACTGT,iTru5_06_B,TACTCCAG,NYU_BMS_Melanoma_13059,pool1,C9 +1,ep256643b01,ep256643b01,NYU_BMS_Melanoma_13059_P1,E5,iTru7_109_03,CATTCGGT,iTru5_07_B,GATACCTG,NYU_BMS_Melanoma_13059,pool2,ep256643b01 +1,EP121011B01,EP121011B01,NYU_BMS_Melanoma_13059_P1,G5,iTru7_109_04,TCGGTTAC,iTru5_08_B,ACCTCTTC,NYU_BMS_Melanoma_13059,pool1,EP121011B01 +1,AP616837B04,AP616837B04,NYU_BMS_Melanoma_13059_P1,I5,iTru7_109_05,AAGTCGAG,iTru5_09_B,ACGGACTT,NYU_BMS_Melanoma_13059,pool2,AP616837B04 +1,SP506933A04,SP506933A04,NYU_BMS_Melanoma_13059_P1,K5,iTru7_109_06,TATCGGTC,iTru5_10_B,CATGTGTG,NYU_BMS_Melanoma_13059,pool1,SP506933A04 +1,EP159695B01,EP159695B01,NYU_BMS_Melanoma_13059_P1,M5,iTru7_109_07,TATTCGCC,iTru5_11_B,TGCCTCAA,NYU_BMS_Melanoma_13059,pool2,EP159695B01 +1,EP256644B01,EP256644B01,NYU_BMS_Melanoma_13059_P1,O5,iTru7_109_08,GTATTGGC,iTru5_12_B,ATCTGACC,NYU_BMS_Melanoma_13059,pool1,EP256644B01 +1,SP511289A02,SP511289A02,NYU_BMS_Melanoma_13059_P1,A7,iTru7_109_09,AGTCGCTT,iTru5_01_C,CACAGACT,NYU_BMS_Melanoma_13059,pool2,SP511289A02 +1,EP305735B04,EP305735B04,NYU_BMS_Melanoma_13059_P1,C7,iTru7_109_10,TGGCACTA,iTru5_02_C,CACTGTAG,NYU_BMS_Melanoma_13059,pool1,EP305735B04 +1,SP415030A01,SP415030A01,NYU_BMS_Melanoma_13059_P1,E7,iTru7_109_11,GGTTGTCA,iTru5_03_C,CACAGGAA,NYU_BMS_Melanoma_13059,pool2,SP415030A01 +1,AP549681B02,AP549681B02,NYU_BMS_Melanoma_13059_P1,G7,iTru7_109_12,AACCTCCT,iTru5_04_C,CCATGAAC,NYU_BMS_Melanoma_13059,pool1,AP549681B02 +1,AP549678B01,AP549678B01,NYU_BMS_Melanoma_13059_P1,I7,iTru7_110_01,ATGACCAG,iTru5_05_C,GCCAATAC,NYU_BMS_Melanoma_13059,pool2,AP549678B01 +1,EP260544B04,EP260544B04,NYU_BMS_Melanoma_13059_P1,K7,iTru7_110_02,AACCGTTC,iTru5_06_C,AGCTACCA,NYU_BMS_Melanoma_13059,pool1,EP260544B04 +1,EP202452B01,EP202452B01,NYU_BMS_Melanoma_13059_P1,M7,iTru7_110_03,TCCAATCG,iTru5_07_C,AACCGAAC,NYU_BMS_Melanoma_13059,pool2,EP202452B01 +1,EP282276B04,EP282276B04,NYU_BMS_Melanoma_13059_P1,O7,iTru7_110_04,CTGCACTT,iTru5_08_C,ATCGCAAC,NYU_BMS_Melanoma_13059,pool1,EP282276B04 +1,SP531696A04,SP531696A04,NYU_BMS_Melanoma_13059_P1,A9,iTru7_110_05,CGCTTAAC,iTru5_09_C,GTTGCTGT,NYU_BMS_Melanoma_13059,pool2,SP531696A04 +1,SP515443A04,SP515443A04,NYU_BMS_Melanoma_13059_P1,C9,iTru7_110_06,CACCACTA,iTru5_10_C,TCTAGTCC,NYU_BMS_Melanoma_13059,pool1,SP515443A04 +1,SP515763A04,SP515763A04,NYU_BMS_Melanoma_13059_P1,E9,iTru7_110_07,ACAGCAAC,iTru5_11_C,GACGAACT,NYU_BMS_Melanoma_13059,pool2,SP515763A04 +1,EP184255B04,EP184255B04,NYU_BMS_Melanoma_13059_P1,G9,iTru7_110_08,GGAAGGAT,iTru5_12_C,TTCGTACG,NYU_BMS_Melanoma_13059,pool1,EP184255B04 +1,SP503615A02,SP503615A02,NYU_BMS_Melanoma_13059_P1,I9,iTru7_110_09,GGCGTTAT,iTru5_01_D,CGACACTT,NYU_BMS_Melanoma_13059,pool2,SP503615A02 +1,EP260543B04,EP260543B04,NYU_BMS_Melanoma_13059_P1,K9,iTru7_110_10,CTGTTGAC,iTru5_02_D,AGACGCTA,NYU_BMS_Melanoma_13059,pool1,EP260543B04 +1,EP768748A04,EP768748A04,NYU_BMS_Melanoma_13059_P1,M9,iTru7_110_11,GTCATCGA,iTru5_03_D,TGACAACC,NYU_BMS_Melanoma_13059,pool2,EP768748A04 +1,AP309872B03,AP309872B03,NYU_BMS_Melanoma_13059_P1,O9,iTru7_110_12,TGACTTCG,iTru5_04_D,GGTACTTC,NYU_BMS_Melanoma_13059,pool1,AP309872B03 +1,AP568785B04,AP568785B04,NYU_BMS_Melanoma_13059_P1,A11,iTru7_111_01,CGATAGAG,iTru5_05_D,CTGTATGC,NYU_BMS_Melanoma_13059,pool2,AP568785B04 +1,EP721390A04,EP721390A04,NYU_BMS_Melanoma_13059_P1,C11,iTru7_111_02,TTCGTTGG,iTru5_06_D,TCGACAAG,NYU_BMS_Melanoma_13059,pool1,EP721390A04 +1,EP940013A01,EP940013A01,NYU_BMS_Melanoma_13059_P1,E11,iTru7_111_03,TGGAGAGT,iTru5_07_D,GCTGAATC,NYU_BMS_Melanoma_13059,pool2,EP940013A01 +1,EP291979B04,EP291979B04,NYU_BMS_Melanoma_13059_P1,G11,iTru7_111_04,TCAGACGA,iTru5_08_D,AGTTGTGC,NYU_BMS_Melanoma_13059,pool1,EP291979B04 +1,EP182065B04,EP182065B04,NYU_BMS_Melanoma_13059_P1,I11,iTru7_111_05,GACGAATG,iTru5_09_D,TGTCGACT,NYU_BMS_Melanoma_13059,pool2,EP182065B04 +1,EP128904B02,EP128904B02,NYU_BMS_Melanoma_13059_P1,K11,iTru7_111_06,CATGAGGA,iTru5_10_D,AAGGCTCT,NYU_BMS_Melanoma_13059,pool1,EP128904B02 +1,EP915769A04,EP915769A04,NYU_BMS_Melanoma_13059_P1,M11,iTru7_111_07,CGGTTGTT,iTru5_11_D,CCTAACAG,NYU_BMS_Melanoma_13059,pool2,EP915769A04 +1,SP464352A03,SP464352A03,NYU_BMS_Melanoma_13059_P1,O11,iTru7_111_08,TCCGTATG,iTru5_12_D,AAGACGAG,NYU_BMS_Melanoma_13059,pool1,SP464352A03 +1,SP365864A04,SP365864A04,NYU_BMS_Melanoma_13059_P1,A13,iTru7_111_09,TGTGGTAC,iTru5_01_E,GACTTGTG,NYU_BMS_Melanoma_13059,pool2,SP365864A04 +1,SP511294A04,SP511294A04,NYU_BMS_Melanoma_13059_P1,C13,iTru7_111_10,AGAACGAG,iTru5_02_E,CAACTCCA,NYU_BMS_Melanoma_13059,pool1,SP511294A04 +1,EP061002B01,EP061002B01,NYU_BMS_Melanoma_13059_P1,E13,iTru7_111_11,CTTCGTTC,iTru5_03_E,TGTTCCGT,NYU_BMS_Melanoma_13059,pool2,EP061002B01 +1,SP410793A01,SP410793A01,NYU_BMS_Melanoma_13059_P1,G13,iTru7_111_12,CCAATAGG,iTru5_04_E,ACCGCTAT,NYU_BMS_Melanoma_13059,pool1,SP410793A01 +1,SP232077A04,SP232077A04,NYU_BMS_Melanoma_13059_P1,I13,iTru7_112_01,ACCATCCA,iTru5_05_E,CTTAGGAC,NYU_BMS_Melanoma_13059,pool2,SP232077A04 +1,EP128910B01,EP128910B01,NYU_BMS_Melanoma_13059_P1,K13,iTru7_112_02,CACACATG,iTru5_06_E,TATGACCG,NYU_BMS_Melanoma_13059,pool1,EP128910B01 +1,AP531397B04,AP531397B04,NYU_BMS_Melanoma_13059_P1,M13,iTru7_112_03,CTTGTCGA,iTru5_07_E,AGCTAGTG,NYU_BMS_Melanoma_13059,pool2,AP531397B04 +1,EP043583B01,EP043583B01,NYU_BMS_Melanoma_13059_P1,O13,iTru7_112_04,AGTCTCAC,iTru5_08_E,GAACGAAG,NYU_BMS_Melanoma_13059,pool1,EP043583B01 +1,EP230245B01,EP230245B01,NYU_BMS_Melanoma_13059_P1,A15,iTru7_112_05,AGTTGGCT,iTru5_09_E,CGTCTAAC,NYU_BMS_Melanoma_13059,pool2,EP230245B01 +1,EP606652B04,EP606652B04,NYU_BMS_Melanoma_13059_P1,C15,iTru7_112_06,CCGGAATT,iTru5_10_E,AACCAGAG,NYU_BMS_Melanoma_13059,pool1,EP606652B04 +1,EP207041B01,EP207041B01,NYU_BMS_Melanoma_13059_P1,E15,iTru7_112_07,CAGTGAAG,iTru5_11_E,CGCCTTAT,NYU_BMS_Melanoma_13059,pool2,EP207041B01 +1,EP727972A04,EP727972A04,NYU_BMS_Melanoma_13059_P1,G15,iTru7_112_08,CCTACTGA,iTru5_12_E,CTCGTTCT,NYU_BMS_Melanoma_13059,pool1,EP727972A04 +1,EP291980B04,EP291980B04,NYU_BMS_Melanoma_13059_P1,I15,iTru7_112_09,TGTGAAGC,iTru5_01_F,GTGAGACT,NYU_BMS_Melanoma_13059,pool2,EP291980B04 +1,EP087938B02,EP087938B02,NYU_BMS_Melanoma_13059_P1,K15,iTru7_112_10,GTCTGATC,iTru5_02_F,AACACGCT,NYU_BMS_Melanoma_13059,pool1,EP087938B02 +1,SP471496A04,SP471496A04,NYU_BMS_Melanoma_13059_P1,M15,iTru7_112_11,TTCAGGAG,iTru5_03_F,CCTAGAGA,NYU_BMS_Melanoma_13059,pool2,SP471496A04 +1,SP573823A04,SP573823A04,NYU_BMS_Melanoma_13059_P1,O15,iTru7_112_12,ACGATGAC,iTru5_04_F,TTCCAGGT,NYU_BMS_Melanoma_13059,pool1,SP573823A04 +1,EP393718B01,EP393718B01,NYU_BMS_Melanoma_13059_P1,A17,iTru7_113_01,CGTTATGC,iTru5_05_F,TCAGCCTT,NYU_BMS_Melanoma_13059,pool2,EP393718B01 +1,SP612496A01,SP612496A01,NYU_BMS_Melanoma_13059_P1,C17,iTru7_113_02,GATACTGG,iTru5_06_F,AGCCAACT,NYU_BMS_Melanoma_13059,pool1,SP612496A01 +1,EP032410B02,EP032410B02,NYU_BMS_Melanoma_13059_P1,E17,iTru7_113_03,CTACTTGG,iTru5_07_F,CTAGCTCA,NYU_BMS_Melanoma_13059,pool2,EP032410B02 +1,EP073216B01,EP073216B01,NYU_BMS_Melanoma_13059_P1,G17,iTru7_113_04,CATACCAC,iTru5_08_F,GGAAGAGA,NYU_BMS_Melanoma_13059,pool1,EP073216B01 +1,EP410046B01,EP410046B01,NYU_BMS_Melanoma_13059_P1,I17,iTru7_113_05,ACATTGCG,iTru5_09_F,AACACTGG,NYU_BMS_Melanoma_13059,pool2,EP410046B01 +1,SP561451A04,SP561451A04,NYU_BMS_Melanoma_13059_P1,K17,iTru7_113_06,TGATCGGA,iTru5_10_F,ACTATCGC,NYU_BMS_Melanoma_13059,pool1,SP561451A04 +1,EP320438B01,EP320438B01,NYU_BMS_Melanoma_13059_P1,M17,iTru7_113_07,AAGTGTCG,iTru5_11_F,ACAACAGC,NYU_BMS_Melanoma_13059,pool2,EP320438B01 +1,SP612495A04,SP612495A04,NYU_BMS_Melanoma_13059_P1,O17,iTru7_113_08,GAACGCTT,iTru5_12_F,TGTGGCTT,NYU_BMS_Melanoma_13059,pool1,SP612495A04 +1,EP446604B03,EP446604B03,NYU_BMS_Melanoma_13059_P1,A19,iTru7_113_09,TCAAGGAC,iTru5_01_G,GTTCCATG,NYU_BMS_Melanoma_13059,pool2,EP446604B03 +1,EP446602B01,EP446602B01,NYU_BMS_Melanoma_13059_P1,C19,iTru7_113_10,TCAACTGG,iTru5_02_G,TGGATGGT,NYU_BMS_Melanoma_13059,pool1,EP446602B01 +1,EP182243B02,EP182243B02,NYU_BMS_Melanoma_13059_P1,E19,iTru7_113_11,GGTTGATG,iTru5_03_G,GCATAACG,NYU_BMS_Melanoma_13059,pool2,EP182243B02 +1,EP333541B04,EP333541B04,NYU_BMS_Melanoma_13059_P1,G19,iTru7_113_12,AAGGACAC,iTru5_04_G,TCGAACCT,NYU_BMS_Melanoma_13059,pool1,EP333541B04 +1,EP238034B01,EP238034B01,NYU_BMS_Melanoma_13059_P1,I19,iTru7_114_01,TTGATCCG,iTru5_05_G,ACATGCCA,NYU_BMS_Melanoma_13059,pool2,EP238034B01 +1,AP298002B02,AP298002B02,NYU_BMS_Melanoma_13059_P1,K19,iTru7_114_02,GGTGATTC,iTru5_06_G,GATCTTGC,NYU_BMS_Melanoma_13059,pool1,AP298002B02 +1,EP455759B04,EP455759B04,NYU_BMS_Melanoma_13059_P1,M19,iTru7_114_03,GATTGCTC,iTru5_07_G,GTTAAGCG,NYU_BMS_Melanoma_13059,pool2,EP455759B04 +1,EP207042B04,EP207042B04,NYU_BMS_Melanoma_13059_P1,O19,iTru7_114_04,ACCTGGAA,iTru5_08_G,GTCATCGT,NYU_BMS_Melanoma_13059,pool1,EP207042B04 +1,LP128479A01,LP128479A01,NYU_BMS_Melanoma_13059_P1,A21,iTru7_114_05,CATCTACG,iTru5_09_G,TCAGACAC,NYU_BMS_Melanoma_13059,pool2,LP128479A01 +1,LP128476A01,LP128476A01,NYU_BMS_Melanoma_13059_P1,C21,iTru7_114_06,CCGTATCT,iTru5_10_G,GTCCTAAG,NYU_BMS_Melanoma_13059,pool1,LP128476A01 +1,EP316863B03,EP316863B03,NYU_BMS_Melanoma_13059_P1,E21,iTru7_114_07,CGGAATAC,iTru5_11_G,AGACCTTG,NYU_BMS_Melanoma_13059,pool2,EP316863B03 +1,C20,C20,NYU_BMS_Melanoma_13059_P1,G21,iTru7_114_08,CTCCTAGA,iTru5_12_G,AGACATGC,NYU_BMS_Melanoma_13059,pool1,C20 +1,lp127896a01,lp127896a01,NYU_BMS_Melanoma_13059_P1,I21,iTru7_114_09,TGGTAGCT,iTru5_01_H,TAGCTGAG,NYU_BMS_Melanoma_13059,pool2,lp127896a01 +1,SP491907A02,SP491907A02,NYU_BMS_Melanoma_13059_P1,K21,iTru7_114_10,TCGAAGGT,iTru5_02_H,TTCGAAGC,NYU_BMS_Melanoma_13059,pool1,SP491907A02 +1,EP182060B03,EP182060B03,NYU_BMS_Melanoma_13059_P1,M21,iTru7_114_11,ACATAGGC,iTru5_03_H,CAGTGCTT,NYU_BMS_Melanoma_13059,pool2,EP182060B03 +1,EP422407B01,EP422407B01,NYU_BMS_Melanoma_13059_P1,O21,iTru7_114_12,CTCAGAGT,iTru5_04_H,TAGTGCCA,NYU_BMS_Melanoma_13059,pool1,EP422407B01 +1,SP573859A04,SP573859A04,NYU_BMS_Melanoma_13059_P1,A23,iTru7_201_01,CTTGGATG,iTru5_05_H,GATGGAGT,NYU_BMS_Melanoma_13059,pool2,SP573859A04 +1,SP584547A02,SP584547A02,NYU_BMS_Melanoma_13059_P1,C23,iTru7_201_02,CAGTTGGA,iTru5_06_H,CCTCGTTA,NYU_BMS_Melanoma_13059,pool1,SP584547A02 +1,EP182346B04,EP182346B04,NYU_BMS_Melanoma_13059_P1,E23,iTru7_201_03,GATAGGCT,iTru5_07_H,CGATTGGA,NYU_BMS_Melanoma_13059,pool2,EP182346B04 +1,AP668631B04,AP668631B04,NYU_BMS_Melanoma_13059_P1,G23,iTru7_201_04,TTGACAGG,iTru5_08_H,CCAACGAA,NYU_BMS_Melanoma_13059,pool1,AP668631B04 +1,EP451428B04,EP451428B04,NYU_BMS_Melanoma_13059_P1,I23,iTru7_201_05,AGAATGCC,iTru5_09_H,AGAAGGAC,NYU_BMS_Melanoma_13059,pool2,EP451428B04 +1,LP128538A01,LP128538A01,NYU_BMS_Melanoma_13059_P1,K23,iTru7_201_06,CTACATCC,iTru5_10_H,TGACCGTT,NYU_BMS_Melanoma_13059,pool1,LP128538A01 +1,SP490298A02,SP490298A02,NYU_BMS_Melanoma_13059_P1,M23,iTru7_201_07,TCATGGTG,iTru5_11_H,GCGTTAGA,NYU_BMS_Melanoma_13059,pool2,SP490298A02 +1,SP573860A01,SP573860A01,NYU_BMS_Melanoma_13059_P1,O23,iTru7_201_08,TACACGCT,iTru5_12_H,TCTAGGAG,NYU_BMS_Melanoma_13059,pool1,SP573860A01 +1,EP032412B02,EP032412B02,NYU_BMS_Melanoma_13059_P2,A2,iTru7_201_09,TACGGTTG,iTru5_13_A,GGTATAGG,NYU_BMS_Melanoma_13059,pool2,EP032412B02 +1,EP163771B01,EP163771B01,NYU_BMS_Melanoma_13059_P2,C2,iTru7_201_10,GGATACCA,iTru5_14_A,TCCGATCA,NYU_BMS_Melanoma_13059,pool1,EP163771B01 +1,LP169879A01,LP169879A01,NYU_BMS_Melanoma_13059_P2,E2,iTru7_201_11,TCGACATC,iTru5_15_A,CGACCTAA,NYU_BMS_Melanoma_13059,pool2,LP169879A01 +1,EP729433A02,EP729433A02,NYU_BMS_Melanoma_13059_P2,G2,iTru7_201_12,GTTGTAGC,iTru5_16_A,GACATCTC,NYU_BMS_Melanoma_13059,pool1,EP729433A02 +1,EP447940B04,EP447940B04,NYU_BMS_Melanoma_13059_P2,I2,iTru7_202_01,ATACGACC,iTru5_17_A,CCAGTATC,NYU_BMS_Melanoma_13059,pool2,EP447940B04 +1,SP584551A08,SP584551A08,NYU_BMS_Melanoma_13059_P2,K2,iTru7_202_02,TTCCAAGG,iTru5_18_A,ACGCTTCT,NYU_BMS_Melanoma_13059,pool1,SP584551A08 +1,EP216516B04,EP216516B04,NYU_BMS_Melanoma_13059_P2,M2,iTru7_202_03,TTGCAGAC,iTru5_19_A,AACGCACA,NYU_BMS_Melanoma_13059,pool2,EP216516B04 +1,EP023808B02,EP023808B02,NYU_BMS_Melanoma_13059_P2,O2,iTru7_202_04,TGCCATTC,iTru5_20_A,TGATCACG,NYU_BMS_Melanoma_13059,pool1,EP023808B02 +1,BLANK2_2A,BLANK2.2A,NYU_BMS_Melanoma_13059_P2,A4,iTru7_202_05,GATGTGTG,iTru5_21_A,GCGTATCA,NYU_BMS_Melanoma_13059,pool2,BLANK2.2A +1,BLANK2_2B,BLANK2.2B,NYU_BMS_Melanoma_13059_P2,C4,iTru7_202_06,ACTCTCGA,iTru5_22_A,GTGTCCTT,NYU_BMS_Melanoma_13059,pool1,BLANK2.2B +1,BLANK2_2C,BLANK2.2C,NYU_BMS_Melanoma_13059_P2,E4,iTru7_202_07,GAGTCTCT,iTru5_23_A,GGTAACGT,NYU_BMS_Melanoma_13059,pool2,BLANK2.2C +1,BLANK2_2D,BLANK2.2D,NYU_BMS_Melanoma_13059_P2,G4,iTru7_202_08,CAACACCT,iTru5_24_A,CGAGAGAA,NYU_BMS_Melanoma_13059,pool1,BLANK2.2D +1,BLANK2_2E,BLANK2.2E,NYU_BMS_Melanoma_13059_P2,I4,iTru7_202_09,CAGTCTTC,iTru5_13_B,CATTGACG,NYU_BMS_Melanoma_13059,pool2,BLANK2.2E +1,BLANK2_2F,BLANK2.2F,NYU_BMS_Melanoma_13059_P2,K4,iTru7_202_10,GGACTGTT,iTru5_14_B,GGTGATGA,NYU_BMS_Melanoma_13059,pool1,BLANK2.2F +1,BLANK2_2G,BLANK2.2G,NYU_BMS_Melanoma_13059_P2,M4,iTru7_202_11,CTTAGTGG,iTru5_15_B,AACCGTGT,NYU_BMS_Melanoma_13059,pool2,BLANK2.2G +1,BLANK2_2H,BLANK2.2H,NYU_BMS_Melanoma_13059_P2,O4,iTru7_202_12,ATTGCGTG,iTru5_16_B,CCTATTGG,NYU_BMS_Melanoma_13059,pool1,BLANK2.2H +1,SP573843A04,SP573843A04,NYU_BMS_Melanoma_13059_P2,A6,iTru7_203_01,GTAACGAC,iTru5_17_B,TCAGTAGG,NYU_BMS_Melanoma_13059,pool2,SP573843A04 +1,EP683835A01,EP683835A01,NYU_BMS_Melanoma_13059_P2,C6,iTru7_203_02,CTTGCTGT,iTru5_18_B,TATGCGGT,NYU_BMS_Melanoma_13059,pool1,EP683835A01 +1,SP573824A04,SP573824A04,NYU_BMS_Melanoma_13059_P2,E6,iTru7_203_03,GTTGTTCG,iTru5_19_B,ATGCCTAG,NYU_BMS_Melanoma_13059,pool2,SP573824A04 +1,SP335002A04,SP335002A04,NYU_BMS_Melanoma_13059_P2,G6,iTru7_203_04,CGTTGAGT,iTru5_20_B,CTAGCAGT,NYU_BMS_Melanoma_13059,pool1,SP335002A04 +1,SP478193A02,SP478193A02,NYU_BMS_Melanoma_13059_P2,I6,iTru7_203_05,TCGAACCA,iTru5_21_B,AGGTCAAC,NYU_BMS_Melanoma_13059,pool2,SP478193A02 +1,SP232311A04,SP232311A04,NYU_BMS_Melanoma_13059_P2,K6,iTru7_203_06,AGACCGTA,iTru5_22_B,GAACGTGA,NYU_BMS_Melanoma_13059,pool1,SP232311A04 +1,SP415021A02,SP415021A02,NYU_BMS_Melanoma_13059_P2,M6,iTru7_203_07,CAGAGTGT,iTru5_23_B,ATCATGCG,NYU_BMS_Melanoma_13059,pool2,SP415021A02 +1,SP231630A02,SP231630A02,NYU_BMS_Melanoma_13059_P2,O6,iTru7_203_08,GACAAGAG,iTru5_24_B,CAACGAGT,NYU_BMS_Melanoma_13059,pool1,SP231630A02 +1,SP641029A02,SP641029A02,NYU_BMS_Melanoma_13059_P2,A8,iTru7_203_09,GAACACAC,iTru5_13_C,CGCAATGT,NYU_BMS_Melanoma_13059,pool2,SP641029A02 +1,SP232310A04,SP232310A04,NYU_BMS_Melanoma_13059_P2,C8,iTru7_203_10,GCTTAGCT,iTru5_14_C,AACAAGGC,NYU_BMS_Melanoma_13059,pool1,SP232310A04 +1,EP617442B01,EP617442B01,NYU_BMS_Melanoma_13059_P2,E8,iTru7_203_11,GAAGGAAG,iTru5_15_C,ACCATGTC,NYU_BMS_Melanoma_13059,pool2,EP617442B01 +1,EP587478B04,EP587478B04,NYU_BMS_Melanoma_13059_P2,G8,iTru7_203_12,CAGTTCTG,iTru5_16_C,AATCCAGC,NYU_BMS_Melanoma_13059,pool1,EP587478B04 +1,EP447928B04,EP447928B04,NYU_BMS_Melanoma_13059_P2,I8,iTru7_204_01,CAGGAGAT,iTru5_17_C,TTGCAACG,NYU_BMS_Melanoma_13059,pool2,EP447928B04 +1,EP587475B04,EP587475B04,NYU_BMS_Melanoma_13059_P2,K8,iTru7_204_02,GTAGCATC,iTru5_18_C,ACCTTCGA,NYU_BMS_Melanoma_13059,pool1,EP587475B04 +1,EP675042B01,EP675042B01,NYU_BMS_Melanoma_13059_P2,M8,iTru7_204_03,TCGTTCGT,iTru5_19_C,CATACGGA,NYU_BMS_Melanoma_13059,pool2,EP675042B01 +1,EP554513B02,EP554513B02,NYU_BMS_Melanoma_13059_P2,O8,iTru7_204_04,GGCAAGTT,iTru5_20_C,GACCGATA,NYU_BMS_Melanoma_13059,pool1,EP554513B02 +1,EP702221B04,EP702221B04,NYU_BMS_Melanoma_13059_P2,A10,iTru7_204_05,ACCATGTG,iTru5_21_C,AAGCTGGT,NYU_BMS_Melanoma_13059,pool2,EP702221B04 +1,AP568787B02,AP568787B02,NYU_BMS_Melanoma_13059_P2,C10,iTru7_204_06,CAACGGAT,iTru5_22_C,ACACCTCA,NYU_BMS_Melanoma_13059,pool1,AP568787B02 +1,EP054632B01,EP054632B01,NYU_BMS_Melanoma_13059_P2,E10,iTru7_204_07,CAATCGAC,iTru5_23_C,CGGAGTAT,NYU_BMS_Melanoma_13059,pool2,EP054632B01 +1,EP121013B01,EP121013B01,NYU_BMS_Melanoma_13059_P2,G10,iTru7_204_08,GTGTTCCT,iTru5_24_C,CTCGACTT,NYU_BMS_Melanoma_13059,pool1,EP121013B01 +1,EP649418A02,EP649418A02,NYU_BMS_Melanoma_13059_P2,I10,iTru7_204_09,AGGAACCT,iTru5_13_D,ATCCACGA,NYU_BMS_Melanoma_13059,pool2,EP649418A02 +1,EP573313B01,EP573313B01,NYU_BMS_Melanoma_13059_P2,K10,iTru7_204_10,ACCTTCTC,iTru5_14_D,ACAGTTCG,NYU_BMS_Melanoma_13059,pool1,EP573313B01 +1,LP154981A01,LP154981A01,NYU_BMS_Melanoma_13059_P2,M10,iTru7_204_11,CCGTAAGA,iTru5_15_D,ACAAGACG,NYU_BMS_Melanoma_13059,pool2,LP154981A01 +1,AP470859B01,AP470859B01,NYU_BMS_Melanoma_13059_P2,O10,iTru7_204_12,ATCGGTGT,iTru5_16_D,ATCGTGGT,NYU_BMS_Melanoma_13059,pool1,AP470859B01 +1,LP154986A01,LP154986A01,NYU_BMS_Melanoma_13059_P2,A12,iTru7_205_01,AGCTCCTA,iTru5_17_D,AGTCAGGT,NYU_BMS_Melanoma_13059,pool2,LP154986A01 +1,AP732307B04,AP732307B04,NYU_BMS_Melanoma_13059_P2,C12,iTru7_205_02,CCTTGATC,iTru5_18_D,CATCAACC,NYU_BMS_Melanoma_13059,pool1,AP732307B04 +1,EP533426B03,EP533426B03,NYU_BMS_Melanoma_13059_P2,E12,iTru7_205_03,CCATTCAC,iTru5_19_D,GGTCACTA,NYU_BMS_Melanoma_13059,pool2,EP533426B03 +1,EP587476B04,EP587476B04,NYU_BMS_Melanoma_13059_P2,G12,iTru7_205_04,GGACAATC,iTru5_20_D,CGGCATTA,NYU_BMS_Melanoma_13059,pool1,EP587476B04 +1,AP696363B02,AP696363B02,NYU_BMS_Melanoma_13059_P2,I12,iTru7_205_05,AAGGCGTT,iTru5_21_D,ACTCGATC,NYU_BMS_Melanoma_13059,pool2,AP696363B02 +1,EP587477B04,EP587477B04,NYU_BMS_Melanoma_13059_P2,K12,iTru7_205_06,GCCATAAC,iTru5_22_D,ATAGGTCC,NYU_BMS_Melanoma_13059,pool1,EP587477B04 +1,SP683466A02,SP683466A02,NYU_BMS_Melanoma_13059_P2,M12,iTru7_205_07,GAAGTTGG,iTru5_23_D,CAGTCACA,NYU_BMS_Melanoma_13059,pool2,SP683466A02 +1,EP554518B04,EP554518B04,NYU_BMS_Melanoma_13059_P2,O12,iTru7_205_08,AGCCAAGT,iTru5_24_D,TAGTGGTG,NYU_BMS_Melanoma_13059,pool1,EP554518B04 +1,EP533429B04,EP533429B04,NYU_BMS_Melanoma_13059_P2,A14,iTru7_205_09,TGACTGAC,iTru5_13_E,CTCCTGAA,NYU_BMS_Melanoma_13059,pool2,EP533429B04 +1,EP431570B01,EP431570B01,NYU_BMS_Melanoma_13059_P2,C14,iTru7_205_10,CACCTGTT,iTru5_14_E,AATCGCTG,NYU_BMS_Melanoma_13059,pool1,EP431570B01 +1,EP202095B04,EP202095B04,NYU_BMS_Melanoma_13059_P2,E14,iTru7_205_11,ATCCGGTA,iTru5_15_E,TGATAGGC,NYU_BMS_Melanoma_13059,pool2,EP202095B04 +1,EP504030B04,EP504030B04,NYU_BMS_Melanoma_13059_P2,G14,iTru7_205_12,ATCTGTCC,iTru5_16_E,ATGCGTCA,NYU_BMS_Melanoma_13059,pool1,EP504030B04 +1,EP207036B01,EP207036B01,NYU_BMS_Melanoma_13059_P2,I14,iTru7_206_01,CCAAGACT,iTru5_17_E,CAGCATAC,NYU_BMS_Melanoma_13059,pool2,EP207036B01 +1,EP393717B01,EP393717B01,NYU_BMS_Melanoma_13059_P2,K14,iTru7_206_02,ATGGCGAA,iTru5_18_E,AAGTGCAG,NYU_BMS_Melanoma_13059,pool1,EP393717B01 +1,SP491898A02,SP491898A02,NYU_BMS_Melanoma_13059_P2,M14,iTru7_206_03,GGTAGTGT,iTru5_19_E,GTATTCCG,NYU_BMS_Melanoma_13059,pool2,SP491898A02 +1,EP484973B04,EP484973B04,NYU_BMS_Melanoma_13059_P2,O14,iTru7_206_04,TCGCTGTT,iTru5_20_E,GTGATCCA,NYU_BMS_Melanoma_13059,pool1,EP484973B04 +1,EP479794B02,EP479794B02,NYU_BMS_Melanoma_13059_P2,A16,iTru7_206_05,AACGTGGA,iTru5_21_E,TATGGCAC,NYU_BMS_Melanoma_13059,pool2,EP479794B02 +1,EP554515B04,EP554515B04,NYU_BMS_Melanoma_13059_P2,C16,iTru7_206_06,AACGACGT,iTru5_22_E,ACCATAGG,NYU_BMS_Melanoma_13059,pool1,EP554515B04 +1,SP631994A04,SP631994A04,NYU_BMS_Melanoma_13059_P2,E16,iTru7_206_07,AACAGGAC,iTru5_23_E,CTCCAATC,NYU_BMS_Melanoma_13059,pool2,SP631994A04 +1,EP921593A04,EP921593A04,NYU_BMS_Melanoma_13059_P2,G16,iTru7_206_08,AAGCGCAT,iTru5_24_E,AGATACGG,NYU_BMS_Melanoma_13059,pool1,EP921593A04 +1,AP787247B04,AP787247B04,NYU_BMS_Melanoma_13059_P2,I16,iTru7_206_09,CACTGACA,iTru5_13_F,TCGATGAC,NYU_BMS_Melanoma_13059,pool2,AP787247B04 +1,EP090129B04,EP090129B04,NYU_BMS_Melanoma_13059_P2,K16,iTru7_206_10,AGGTCACT,iTru5_14_F,CCAACACT,NYU_BMS_Melanoma_13059,pool1,EP090129B04 +1,EP447975B02,EP447975B02,NYU_BMS_Melanoma_13059_P2,M16,iTru7_206_11,GTCACTGT,iTru5_15_F,CTTCACTG,NYU_BMS_Melanoma_13059,pool2,EP447975B02 +1,EP212214B01,EP212214B01,NYU_BMS_Melanoma_13059_P2,O16,iTru7_206_12,ATGCCAAC,iTru5_16_F,CGATGTTC,NYU_BMS_Melanoma_13059,pool1,EP212214B01 +1,EP410042B01,EP410042B01,NYU_BMS_Melanoma_13059_P2,A18,iTru7_207_01,CACGTTGT,iTru5_17_F,ACCGGTTA,NYU_BMS_Melanoma_13059,pool2,EP410042B01 +1,SP404409A02,SP404409A02,NYU_BMS_Melanoma_13059_P2,C18,iTru7_207_02,TATTCCGG,iTru5_18_F,CTTACAGC,NYU_BMS_Melanoma_13059,pool1,SP404409A02 +1,SP247340A04,SP247340A04,NYU_BMS_Melanoma_13059_P2,E18,iTru7_207_03,TGCTTCCA,iTru5_19_F,TGGCTCTT,NYU_BMS_Melanoma_13059,pool2,SP247340A04 +1,AP029018B01,AP029018B01,NYU_BMS_Melanoma_13059_P2,G18,iTru7_207_04,GTCTAGGT,iTru5_20_F,AAGACCGT,NYU_BMS_Melanoma_13059,pool1,AP029018B01 +1,EP872341A01,EP872341A01,NYU_BMS_Melanoma_13059_P2,I18,iTru7_207_05,GTTCAACC,iTru5_21_F,GGACATCA,NYU_BMS_Melanoma_13059,pool2,EP872341A01 +1,AP062219B03,AP062219B03,NYU_BMS_Melanoma_13059_P2,K18,iTru7_207_06,CGCAATCT,iTru5_22_F,TTGGTGCA,NYU_BMS_Melanoma_13059,pool1,AP062219B03 +1,EP790020A02,EP790020A02,NYU_BMS_Melanoma_13059_P2,M18,iTru7_207_07,TTAAGCGG,iTru5_23_F,AAGCGTTC,NYU_BMS_Melanoma_13059,pool2,EP790020A02 +1,EP808112A04,EP808112A04,NYU_BMS_Melanoma_13059_P2,O18,iTru7_207_08,TGCTTGGT,iTru5_24_F,ACTCTCCA,NYU_BMS_Melanoma_13059,pool1,EP808112A04 +1,SP404403A02,SP404403A02,NYU_BMS_Melanoma_13059_P2,A20,iTru7_207_09,ACACACTC,iTru5_13_G,GAACCTTC,NYU_BMS_Melanoma_13059,pool2,SP404403A02 +1,EP073160B01,EP073160B01,NYU_BMS_Melanoma_13059_P2,C20,iTru7_207_10,CCACTTCT,iTru5_14_G,GGAACATG,NYU_BMS_Melanoma_13059,pool1,EP073160B01 +1,EP012991B03,EP012991B03,NYU_BMS_Melanoma_13059_P2,E20,iTru7_207_11,TTGGTCTC,iTru5_15_G,GCCTATGT,NYU_BMS_Melanoma_13059,pool2,EP012991B03 +1,SP317297A02,SP317297A02,NYU_BMS_Melanoma_13059_P2,G20,iTru7_207_12,CTCATCAG,iTru5_16_G,CCGTAACT,NYU_BMS_Melanoma_13059,pool1,SP317297A02 +1,EP656055A04,EP656055A04,NYU_BMS_Melanoma_13059_P2,I20,iTru7_208_01,ATGACGTC,iTru5_17_G,CGGATCAA,NYU_BMS_Melanoma_13059,pool2,EP656055A04 +1,EP649623A01,EP649623A01,NYU_BMS_Melanoma_13059_P2,K20,iTru7_208_02,AACCTTGG,iTru5_18_G,CCACATTG,NYU_BMS_Melanoma_13059,pool1,EP649623A01 +1,EP790019A01,EP790019A01,NYU_BMS_Melanoma_13059_P2,M20,iTru7_208_03,GTCTTGCA,iTru5_19_G,CTCTATCG,NYU_BMS_Melanoma_13059,pool2,EP790019A01 +1,SP257519A04,SP257519A04,NYU_BMS_Melanoma_13059_P2,O20,iTru7_208_04,CAAGTGCA,iTru5_20_G,TGTGTCAG,NYU_BMS_Melanoma_13059,pool1,SP257519A04 +1,EP808104A01,EP808104A01,NYU_BMS_Melanoma_13059_P2,A22,iTru7_208_05,TCCGAGTT,iTru5_21_G,CGCAACTA,NYU_BMS_Melanoma_13059,pool2,EP808104A01 +1,EP808106A01,EP808106A01,NYU_BMS_Melanoma_13059_P2,C22,iTru7_208_06,ACCTAAGG,iTru5_22_G,GATCAGAC,NYU_BMS_Melanoma_13059,pool1,EP808106A01 +1,SP231629A02,SP231629A02,NYU_BMS_Melanoma_13059_P2,E22,iTru7_208_07,TTGGACGT,iTru5_23_G,ATTCCGCT,NYU_BMS_Melanoma_13059,pool2,SP231629A02 +1,EP675044A01,EP675044A01,NYU_BMS_Melanoma_13059_P2,G22,iTru7_208_08,GATAGCGA,iTru5_24_G,ATCCTTCC,NYU_BMS_Melanoma_13059,pool1,EP675044A01 +1,EP657260A01,EP657260A01,NYU_BMS_Melanoma_13059_P2,I22,iTru7_208_09,TTGGTGAG,iTru5_13_H,GCTTCACA,NYU_BMS_Melanoma_13059,pool2,EP657260A01 +1,EP808110A04,EP808110A04,NYU_BMS_Melanoma_13059_P2,K22,iTru7_208_10,AACTGGTG,iTru5_14_H,CTTCGGTT,NYU_BMS_Melanoma_13059,pool1,EP808110A04 +1,AP032413B04,AP032413B04,NYU_BMS_Melanoma_13059_P2,M22,iTru7_208_11,TAGCCGAA,iTru5_15_H,CATGGATC,NYU_BMS_Melanoma_13059,pool2,AP032413B04 +1,EP843906A04,EP843906A04,NYU_BMS_Melanoma_13059_P2,O22,iTru7_208_12,TGCGAACT,iTru5_16_H,GTCAACAG,NYU_BMS_Melanoma_13059,pool1,EP843906A04 +1,AP173305B04,AP173305B04,NYU_BMS_Melanoma_13059_P2,A24,iTru7_209_01,GACTTAGG,iTru5_17_H,AATTCCGG,NYU_BMS_Melanoma_13059,pool2,AP173305B04 +1,SP231628A02,SP231628A02,NYU_BMS_Melanoma_13059_P2,C24,iTru7_209_02,ACACCAGT,iTru5_18_H,GGCGAATA,NYU_BMS_Melanoma_13059,pool1,SP231628A02 +1,AP173301B04,AP173301B04,NYU_BMS_Melanoma_13059_P2,E24,iTru7_209_03,CCTGATTG,iTru5_19_H,AGGAGGTT,NYU_BMS_Melanoma_13059,pool2,AP173301B04 +1,SP404405A02,SP404405A02,NYU_BMS_Melanoma_13059_P2,G24,iTru7_209_04,TTGTGTGC,iTru5_20_H,ACTCTGAG,NYU_BMS_Melanoma_13059,pool1,SP404405A02 +1,EP649653A04,EP649653A04,NYU_BMS_Melanoma_13059_P2,I24,iTru7_209_05,TACCACAG,iTru5_21_H,GCCTTCTT,NYU_BMS_Melanoma_13059,pool2,EP649653A04 +1,EP718687A04,EP718687A04,NYU_BMS_Melanoma_13059_P2,K24,iTru7_209_06,ATTCGAGG,iTru5_22_H,TGGACCAT,NYU_BMS_Melanoma_13059,pool1,EP718687A04 +1,AP905750A02,AP905750A02,NYU_BMS_Melanoma_13059_P2,M24,iTru7_209_07,GCACGTAA,iTru5_23_H,GCATAGTC,NYU_BMS_Melanoma_13059,pool2,AP905750A02 +1,EP738468A01,EP738468A01,NYU_BMS_Melanoma_13059_P2,O24,iTru7_209_08,GTGTGACA,iTru5_24_H,TACACACG,NYU_BMS_Melanoma_13059,pool1,EP738468A01 +1,C6,C6,NYU_BMS_Melanoma_13059_P3,B1,iTru7_209_09,CTGGTTCT,iTru5_101_A,AACAACCG,NYU_BMS_Melanoma_13059,pool2,C6 +1,EP890157A02,EP890157A02,NYU_BMS_Melanoma_13059_P3,D1,iTru7_209_10,ACTGTGTC,iTru5_102_A,AAGCCTGA,NYU_BMS_Melanoma_13059,pool1,EP890157A02 +1,SP353893A02,SP353893A02,NYU_BMS_Melanoma_13059_P3,F1,iTru7_209_11,CCATACGT,iTru5_103_A,AAGGACCA,NYU_BMS_Melanoma_13059,pool2,SP353893A02 +1,EP944059A02,EP944059A02,NYU_BMS_Melanoma_13059_P3,H1,iTru7_209_12,GGTACTAC,iTru5_104_A,ACAACGTG,NYU_BMS_Melanoma_13059,pool1,EP944059A02 +1,EP970005A01,EP970005A01,NYU_BMS_Melanoma_13059_P3,J1,iTru7_210_01,CAGTCCAA,iTru5_105_A,ACGAACGA,NYU_BMS_Melanoma_13059,pool2,EP970005A01 +1,EP927461A04,EP927461A04,NYU_BMS_Melanoma_13059_P3,L1,iTru7_210_02,TCGTAGTC,iTru5_106_A,ACGTCCAA,NYU_BMS_Melanoma_13059,pool1,EP927461A04 +1,EP808111A03,EP808111A03,NYU_BMS_Melanoma_13059_P3,N1,iTru7_210_03,TCGAGTGA,iTru5_107_A,ACTGGTGT,NYU_BMS_Melanoma_13059,pool2,EP808111A03 +1,EP927459A04,EP927459A04,NYU_BMS_Melanoma_13059_P3,P1,iTru7_210_04,TGTAGCCA,iTru5_108_A,AGATCGTC,NYU_BMS_Melanoma_13059,pool1,EP927459A04 +1,SP317293A02,SP317293A02,NYU_BMS_Melanoma_13059_P3,B3,iTru7_210_05,TGCAGGTA,iTru5_109_A,AGCGAGAT,NYU_BMS_Melanoma_13059,pool2,SP317293A02 +1,SP235186A04,SP235186A04,NYU_BMS_Melanoma_13059_P3,D3,iTru7_210_06,CTAGGTGA,iTru5_110_A,AGGATAGC,NYU_BMS_Melanoma_13059,pool1,SP235186A04 +1,SP399724A04,SP399724A04,NYU_BMS_Melanoma_13059_P3,F3,iTru7_210_07,CTCCATGT,iTru5_111_A,AGGTGTTG,NYU_BMS_Melanoma_13059,pool2,SP399724A04 +1,EP738469A01,EP738469A01,NYU_BMS_Melanoma_13059_P3,H3,iTru7_210_08,CTTACAGC,iTru5_112_A,AGTCTTGG,NYU_BMS_Melanoma_13059,pool1,EP738469A01 +1,SP284095A03,SP284095A03,NYU_BMS_Melanoma_13059_P3,J3,iTru7_210_09,CGTATTCG,iTru5_101_B,GGTTGGTA,NYU_BMS_Melanoma_13059,pool2,SP284095A03 +1,C5,C5,NYU_BMS_Melanoma_13059_P3,L3,iTru7_210_10,ATTCTGGC,iTru5_102_B,GGAGGAAT,NYU_BMS_Melanoma_13059,pool1,C5 +1,EP337325B04,EP337325B04,NYU_BMS_Melanoma_13059_P3,N3,iTru7_210_11,TACCAGGA,iTru5_103_B,GTAAGGTG,NYU_BMS_Melanoma_13059,pool2,EP337325B04 +1,EP759450A04,EP759450A04,NYU_BMS_Melanoma_13059_P3,P3,iTru7_210_12,TACATCGG,iTru5_104_B,GGTGTACA,NYU_BMS_Melanoma_13059,pool1,EP759450A04 +1,BLANK3_3A,BLANK3.3A,NYU_BMS_Melanoma_13059_P3,B5,iTru7_301_01,GTGGTGTT,iTru5_105_B,GGATGTAG,NYU_BMS_Melanoma_13059,pool2,BLANK3.3A +1,BLANK3_3B,BLANK3.3B,NYU_BMS_Melanoma_13059_P3,D5,iTru7_301_02,CGCATGAT,iTru5_106_B,GTCCTGTT,NYU_BMS_Melanoma_13059,pool1,BLANK3.3B +1,BLANK3_3C,BLANK3.3C,NYU_BMS_Melanoma_13059_P3,F5,iTru7_301_03,AGTCGACA,iTru5_107_B,GTACCACA,NYU_BMS_Melanoma_13059,pool2,BLANK3.3C +1,BLANK3_3D,BLANK3.3D,NYU_BMS_Melanoma_13059_P3,H5,iTru7_301_04,GTGAGCTT,iTru5_108_B,GATCTCAG,NYU_BMS_Melanoma_13059,pool1,BLANK3.3D +1,BLANK3_3E,BLANK3.3E,NYU_BMS_Melanoma_13059_P3,J5,iTru7_301_05,GACATTCC,iTru5_109_B,GAGCTCTA,NYU_BMS_Melanoma_13059,pool2,BLANK3.3E +1,BLANK3_3F,BLANK3.3F,NYU_BMS_Melanoma_13059_P3,L5,iTru7_301_06,AGTTCGTC,iTru5_110_B,TACTAGCG,NYU_BMS_Melanoma_13059,pool1,BLANK3.3F +1,BLANK3_3G,BLANK3.3G,NYU_BMS_Melanoma_13059_P3,N5,iTru7_301_07,TAATGCCG,iTru5_111_B,GCACACAA,NYU_BMS_Melanoma_13059,pool2,BLANK3.3G +1,BLANK3_3H,BLANK3.3H,NYU_BMS_Melanoma_13059_P3,P5,iTru7_301_08,CGACCATT,iTru5_112_B,GAATCACC,NYU_BMS_Melanoma_13059,pool1,BLANK3.3H +1,AP006367B02,AP006367B02,NYU_BMS_Melanoma_13059_P3,B7,iTru7_301_09,CTGAAGCT,iTru5_101_C,AACAGCGA,NYU_BMS_Melanoma_13059,pool2,AP006367B02 +1,EP929277A02,EP929277A02,NYU_BMS_Melanoma_13059_P3,D7,iTru7_301_10,TTGAGGCA,iTru5_102_C,AAGCGACT,NYU_BMS_Melanoma_13059,pool1,EP929277A02 +1,AP324642B04,AP324642B04,NYU_BMS_Melanoma_13059_P3,F7,iTru7_301_11,GATCGAGT,iTru5_103_C,AAGGCGTA,NYU_BMS_Melanoma_13059,pool2,AP324642B04 +1,EP786631A04,EP786631A04,NYU_BMS_Melanoma_13059_P3,H7,iTru7_301_12,ATACTCCG,iTru5_104_C,ACACCGAT,NYU_BMS_Melanoma_13059,pool1,EP786631A04 +1,EP657385A04,EP657385A04,NYU_BMS_Melanoma_13059_P3,J7,iTru7_302_01,AAGTCCGT,iTru5_105_C,ACGAATCC,NYU_BMS_Melanoma_13059,pool2,EP657385A04 +1,SP235189A01,SP235189A01,NYU_BMS_Melanoma_13059_P3,L7,iTru7_302_02,TAGCGTCT,iTru5_106_C,ACTACGGT,NYU_BMS_Melanoma_13059,pool1,SP235189A01 +1,EP448041B04,EP448041B04,NYU_BMS_Melanoma_13059_P3,N7,iTru7_302_03,TGACGCAT,iTru5_107_C,AGAAGCCT,NYU_BMS_Melanoma_13059,pool2,EP448041B04 +1,SP231631A02,SP231631A02,NYU_BMS_Melanoma_13059_P3,P7,iTru7_302_04,AGCGTGTT,iTru5_108_C,AGATTGCG,NYU_BMS_Melanoma_13059,pool1,SP231631A02 +1,SP280481A02,SP280481A02,NYU_BMS_Melanoma_13059_P3,B9,iTru7_302_05,TGCACCAA,iTru5_109_C,AGCGTGTA,NYU_BMS_Melanoma_13059,pool2,SP280481A02 +1,AP032412B04,AP032412B04,NYU_BMS_Melanoma_13059_P3,D9,iTru7_302_06,ATCACACG,iTru5_110_C,AGGCTGAA,NYU_BMS_Melanoma_13059,pool1,AP032412B04 +1,EP649737A03,EP649737A03,NYU_BMS_Melanoma_13059_P3,F9,iTru7_302_07,ATGCCTGT,iTru5_111_C,AGGTTCCT,NYU_BMS_Melanoma_13059,pool2,EP649737A03 +1,AP967057A04,AP967057A04,NYU_BMS_Melanoma_13059_P3,H9,iTru7_302_08,ACCTGACT,iTru5_112_C,AGTGACCT,NYU_BMS_Melanoma_13059,pool1,AP967057A04 +1,EP876243A04,EP876243A04,NYU_BMS_Melanoma_13059_P3,J9,iTru7_302_09,GCTTCGAA,iTru5_101_D,GGTTAGCT,NYU_BMS_Melanoma_13059,pool2,EP876243A04 +1,SP229387A04,SP229387A04,NYU_BMS_Melanoma_13059_P3,L9,iTru7_302_10,CGGTCATA,iTru5_102_D,GTAGCGTA,NYU_BMS_Melanoma_13059,pool1,SP229387A04 +1,EP667743A04,EP667743A04,NYU_BMS_Melanoma_13059_P3,N9,iTru7_302_11,GTTAGACG,iTru5_103_D,GGACTACT,NYU_BMS_Melanoma_13059,pool2,EP667743A04 +1,SP246941A01,SP246941A01,NYU_BMS_Melanoma_13059_P3,P9,iTru7_302_12,TCTAACGC,iTru5_104_D,TGGTTCGA,NYU_BMS_Melanoma_13059,pool1,SP246941A01 +1,AP745799A04,AP745799A04,NYU_BMS_Melanoma_13059_P3,B11,iTru7_303_01,ATAGCGGT,iTru5_105_D,GGAGTCTT,NYU_BMS_Melanoma_13059,pool2,AP745799A04 +1,SP205732A02,SP205732A02,NYU_BMS_Melanoma_13059_P3,D11,iTru7_303_02,GGACCTAT,iTru5_106_D,GGATTCAC,NYU_BMS_Melanoma_13059,pool1,SP205732A02 +1,SP230382A04,SP230382A04,NYU_BMS_Melanoma_13059_P3,F11,iTru7_303_03,CGATGCTT,iTru5_107_D,TCGGATTC,NYU_BMS_Melanoma_13059,pool2,SP230382A04 +1,SP230380A02,SP230380A02,NYU_BMS_Melanoma_13059_P3,H11,iTru7_303_04,GAGCTTGT,iTru5_108_D,GAGCAATC,NYU_BMS_Melanoma_13059,pool1,SP230380A02 +1,SP230381A01,SP230381A01,NYU_BMS_Melanoma_13059_P3,J11,iTru7_303_05,GTGAAGTG,iTru5_109_D,GATCCACT,NYU_BMS_Melanoma_13059,pool2,SP230381A01 +1,SP205754A01,SP205754A01,NYU_BMS_Melanoma_13059_P3,L11,iTru7_303_06,GAGTGGTT,iTru5_110_D,GAAGACTG,NYU_BMS_Melanoma_13059,pool1,SP205754A01 +1,EP606662B04,EP606662B04,NYU_BMS_Melanoma_13059_P3,N11,iTru7_303_07,TGATACGC,iTru5_111_D,GCCACTTA,NYU_BMS_Melanoma_13059,pool2,EP606662B04 +1,AP780167B02,AP780167B02,NYU_BMS_Melanoma_13059_P3,P11,iTru7_303_08,AGCAGATG,iTru5_112_D,TCCATTGC,NYU_BMS_Melanoma_13059,pool1,AP780167B02 +1,EP447927B04,EP447927B04,NYU_BMS_Melanoma_13059_P3,B13,iTru7_303_09,CCAGTGTT,iTru5_101_E,AACAGTCC,NYU_BMS_Melanoma_13059,pool2,EP447927B04 +1,C18,C18,NYU_BMS_Melanoma_13059_P3,D13,iTru7_303_10,ATTCCTCC,iTru5_102_E,AAGCTCAC,NYU_BMS_Melanoma_13059,pool1,C18 +1,LP191039A01,LP191039A01,NYU_BMS_Melanoma_13059_P3,F13,iTru7_303_11,CTAACTCG,iTru5_103_E,AAGTCCTC,NYU_BMS_Melanoma_13059,pool2,LP191039A01 +1,EP606663B04,EP606663B04,NYU_BMS_Melanoma_13059_P3,H13,iTru7_303_12,GATGAGAC,iTru5_104_E,ACACTCTG,NYU_BMS_Melanoma_13059,pool1,EP606663B04 +1,EP573296B01,EP573296B01,NYU_BMS_Melanoma_13059_P3,J13,iTru7_304_01,TCAGGCTT,iTru5_105_E,ACGGTACA,NYU_BMS_Melanoma_13059,pool2,EP573296B01 +1,EP447926B04,EP447926B04,NYU_BMS_Melanoma_13059_P3,L13,iTru7_304_02,GTTCTCGT,iTru5_106_E,ACTCCTAC,NYU_BMS_Melanoma_13059,pool1,EP447926B04 +1,LP127767A01,LP127767A01,NYU_BMS_Melanoma_13059_P3,N13,iTru7_304_03,ATCGATCG,iTru5_107_E,AGAGGATG,NYU_BMS_Melanoma_13059,pool2,LP127767A01 +1,EP479266B04,EP479266B04,NYU_BMS_Melanoma_13059_P3,P13,iTru7_304_04,CCTCAGTT,iTru5_108_E,AGCCGTAA,NYU_BMS_Melanoma_13059,pool1,EP479266B04 +1,LP128543A01,LP128543A01,NYU_BMS_Melanoma_13059_P3,B15,iTru7_304_05,ACTGCTAG,iTru5_109_E,AGCTTCAG,NYU_BMS_Melanoma_13059,pool2,LP128543A01 +1,EP479270B03,EP479270B03,NYU_BMS_Melanoma_13059_P3,D15,iTru7_304_06,TCCGTGAA,iTru5_110_E,AGGTAGGA,NYU_BMS_Melanoma_13059,pool1,EP479270B03 +1,EP921594A04,EP921594A04,NYU_BMS_Melanoma_13059_P3,F15,iTru7_304_07,GGATTCGT,iTru5_111_E,AGTACACG,NYU_BMS_Melanoma_13059,pool2,EP921594A04 +1,EP554501B04,EP554501B04,NYU_BMS_Melanoma_13059_P3,H15,iTru7_304_08,GGTCAGAT,iTru5_112_E,AGTGCATC,NYU_BMS_Melanoma_13059,pool1,EP554501B04 +1,EP542577B04,EP542577B04,NYU_BMS_Melanoma_13059_P3,J15,iTru7_304_09,TCGTGGAT,iTru5_101_F,TTGGACTG,NYU_BMS_Melanoma_13059,pool2,EP542577B04 +1,EP487995B04,EP487995B04,NYU_BMS_Melanoma_13059_P3,L15,iTru7_304_10,CGTGTGTA,iTru5_102_F,GTCGATTG,NYU_BMS_Melanoma_13059,pool1,EP487995B04 +1,EP542578B04,EP542578B04,NYU_BMS_Melanoma_13059_P3,N15,iTru7_304_11,GTGTCTGA,iTru5_103_F,GGCATTCT,NYU_BMS_Melanoma_13059,pool2,EP542578B04 +1,EP573310B01,EP573310B01,NYU_BMS_Melanoma_13059_P3,P15,iTru7_304_12,GAATCGTG,iTru5_104_F,TGGTATCC,NYU_BMS_Melanoma_13059,pool1,EP573310B01 +1,EP244366B01,EP244366B01,NYU_BMS_Melanoma_13059_P3,B17,iTru7_305_01,GCGATAGT,iTru5_105_F,GGCAAGTT,NYU_BMS_Melanoma_13059,pool2,EP244366B01 +1,EP533389B03,EP533389B03,NYU_BMS_Melanoma_13059_P3,D17,iTru7_305_02,GGCTATTG,iTru5_106_F,GTCTGAGT,NYU_BMS_Melanoma_13059,pool1,EP533389B03 +1,EP244360B01,EP244360B01,NYU_BMS_Melanoma_13059_P3,F17,iTru7_305_03,AGTTACGG,iTru5_107_F,TCTACGCA,NYU_BMS_Melanoma_13059,pool2,EP244360B01 +1,AP911328B01,AP911328B01,NYU_BMS_Melanoma_13059_P3,H17,iTru7_305_04,CGTACGAA,iTru5_108_F,GAGGCATT,NYU_BMS_Melanoma_13059,pool1,AP911328B01 +1,AP481403B02,AP481403B02,NYU_BMS_Melanoma_13059_P3,J17,iTru7_305_05,ACCACGAT,iTru5_109_F,GCTAAGGA,NYU_BMS_Melanoma_13059,pool2,AP481403B02 +1,22_001_801_552_503_00,22.001.801.552.503.00,NYU_BMS_Melanoma_13059_P3,L17,iTru7_305_06,GATTACCG,iTru5_110_F,GCCAGAAT,NYU_BMS_Melanoma_13059,pool1,22_001_801_552_503_00 +1,EP372981B04,EP372981B04,NYU_BMS_Melanoma_13059_P3,N17,iTru7_305_07,GAGATACG,iTru5_111_F,TAAGTGGC,NYU_BMS_Melanoma_13059,pool2,EP372981B04 +1,EP447929B04,EP447929B04,NYU_BMS_Melanoma_13059_P3,P17,iTru7_305_08,CGACGTTA,iTru5_112_F,GCAATGAG,NYU_BMS_Melanoma_13059,pool1,EP447929B04 +1,SP573849A04,SP573849A04,NYU_BMS_Melanoma_13059_P3,B19,iTru7_305_09,GAGATGTC,iTru5_101_G,AACTGAGG,NYU_BMS_Melanoma_13059,pool2,SP573849A04 +1,SP577399A02,SP577399A02,NYU_BMS_Melanoma_13059_P3,D19,iTru7_305_10,GATTGGAG,iTru5_102_G,AAGGAAGG,NYU_BMS_Melanoma_13059,pool1,SP577399A02 +1,EP606656B03,EP606656B03,NYU_BMS_Melanoma_13059_P3,F19,iTru7_305_11,GCAATTCG,iTru5_103_G,AATGGTCG,NYU_BMS_Melanoma_13059,pool2,EP606656B03 +1,LP166715A01,LP166715A01,NYU_BMS_Melanoma_13059_P3,H19,iTru7_305_12,CGTCAATG,iTru5_104_G,ACAGCAAG,NYU_BMS_Melanoma_13059,pool1,LP166715A01 +1,AP668628B04,AP668628B04,NYU_BMS_Melanoma_13059_P3,J19,iTru7_401_01,ATGCACGA,iTru5_105_G,ACGTATGG,NYU_BMS_Melanoma_13059,pool2,AP668628B04 +1,C14,C14,NYU_BMS_Melanoma_13059_P3,L19,iTru7_401_02,ATCGCCAT,iTru5_106_G,ACTGCACT,NYU_BMS_Melanoma_13059,pool1,C14 +1,EP446610B02,EP446610B02,NYU_BMS_Melanoma_13059_P3,N19,iTru7_401_03,TCTCGCAA,iTru5_107_G,AGAGTCCA,NYU_BMS_Melanoma_13059,pool2,EP446610B02 +1,EP339061B02,EP339061B02,NYU_BMS_Melanoma_13059_P3,P19,iTru7_401_04,ACGACAGA,iTru5_108_G,AGCCTATC,NYU_BMS_Melanoma_13059,pool1,EP339061B02 +1,SP681591A04,SP681591A04,NYU_BMS_Melanoma_13059_P3,B21,iTru7_401_05,TTACGGCT,iTru5_109_G,AGGAACAC,NYU_BMS_Melanoma_13059,pool2,SP681591A04 +1,EP393712B02,EP393712B02,NYU_BMS_Melanoma_13059_P3,D21,iTru7_401_06,GAGGACTT,iTru5_110_G,AGGTCTGT,NYU_BMS_Melanoma_13059,pool1,EP393712B02 +1,EP410041B01,EP410041B01,NYU_BMS_Melanoma_13059_P3,F21,iTru7_401_07,GGCATACT,iTru5_111_G,AGTATGCC,NYU_BMS_Melanoma_13059,pool2,EP410041B01 +1,SP453872A01,SP453872A01,NYU_BMS_Melanoma_13059_P3,H21,iTru7_401_08,CGTAGGTT,iTru5_112_G,AGTTCGCA,NYU_BMS_Melanoma_13059,pool1,SP453872A01 +1,22_001_710_503_791_00,22.001.710.503.791.00,NYU_BMS_Melanoma_13059_P3,J21,iTru7_401_09,ATATGCGC,iTru5_101_H,TGGAAGCA,NYU_BMS_Melanoma_13059,pool2,22_001_710_503_791_00 +1,LP128540A01,LP128540A01,NYU_BMS_Melanoma_13059_P3,L21,iTru7_401_10,GGATGTAG,iTru5_102_H,GTCAGTCA,NYU_BMS_Melanoma_13059,pool1,LP128540A01 +1,EP339053B02,EP339053B02,NYU_BMS_Melanoma_13059_P3,N21,iTru7_401_11,CCTGTCAT,iTru5_103_H,GTAACCGA,NYU_BMS_Melanoma_13059,pool2,EP339053B02 +1,EP617443B01,EP617443B01,NYU_BMS_Melanoma_13059_P3,P21,iTru7_401_12,TGCTCATG,iTru5_104_H,GTTATGGC,NYU_BMS_Melanoma_13059,pool1,EP617443B01 +1,EP190307B01,EP190307B01,NYU_BMS_Melanoma_13059_P3,B23,iTru7_402_01,TGAAGACG,iTru5_105_H,GTAAGCAC,NYU_BMS_Melanoma_13059,pool2,EP190307B01 +1,AP795068B04,AP795068B04,NYU_BMS_Melanoma_13059_P3,D23,iTru7_402_02,GTTACGCA,iTru5_106_H,GGAATGTC,NYU_BMS_Melanoma_13059,pool1,AP795068B04 +1,LP128541A01,LP128541A01,NYU_BMS_Melanoma_13059_P3,F23,iTru7_402_03,ACTCAGAC,iTru5_107_H,GAGAAGGT,NYU_BMS_Melanoma_13059,pool2,LP128541A01 +1,EP584756B04,EP584756B04,NYU_BMS_Melanoma_13059_P3,H23,iTru7_402_04,GTCCACAT,iTru5_108_H,GAGTAGAG,NYU_BMS_Melanoma_13059,pool1,EP584756B04 +1,SP284096A02,SP284096A02,NYU_BMS_Melanoma_13059_P3,J23,iTru7_402_05,CGCTAGTA,iTru5_109_H,GCATTGGT,NYU_BMS_Melanoma_13059,pool2,SP284096A02 +1,EP431562B04,EP431562B04,NYU_BMS_Melanoma_13059_P3,L23,iTru7_402_06,GAATCCGA,iTru5_110_H,TCCAGCAA,NYU_BMS_Melanoma_13059,pool1,EP431562B04 +1,EP685640B01,EP685640B01,NYU_BMS_Melanoma_13059_P3,N23,iTru7_402_07,GAGACGAT,iTru5_111_H,GAATCCGT,NYU_BMS_Melanoma_13059,pool2,EP685640B01 +1,EP339059B02,EP339059B02,NYU_BMS_Melanoma_13059_P3,P23,iTru7_402_08,TAAGTGGC,iTru5_112_H,TACATCGG,NYU_BMS_Melanoma_13059,pool1,EP339059B02 +1,EP431575B01,EP431575B01,NYU_BMS_Melanoma_13059_P4,B2,iTru7_402_09,ACTGAGGT,iTru5_113_A,ATAACGCC,NYU_BMS_Melanoma_13059,pool2,EP431575B01 +1,EP379938B01,EP379938B01,NYU_BMS_Melanoma_13059_P4,D2,iTru7_402_10,TGTACCGT,iTru5_114_A,ATGACAGG,NYU_BMS_Melanoma_13059,pool1,EP379938B01 +1,EP529635B02,EP529635B02,NYU_BMS_Melanoma_13059_P4,F2,iTru7_402_11,AGCAAGCA,iTru5_115_A,CAACACAG,NYU_BMS_Melanoma_13059,pool2,EP529635B02 +1,EP554506B04,EP554506B04,NYU_BMS_Melanoma_13059_P4,H2,iTru7_402_12,TCTCGTGT,iTru5_116_A,CACCAGTT,NYU_BMS_Melanoma_13059,pool1,EP554506B04 +1,EP455757B04,EP455757B04,NYU_BMS_Melanoma_13059_P4,J2,iTru7_115_01,CAAGGTCT,iTru5_117_A,CAGAGTGA,NYU_BMS_Melanoma_13059,pool2,EP455757B04 +1,SP491900A02,SP491900A02,NYU_BMS_Melanoma_13059_P4,L2,iTru7_115_02,TAGACGTG,iTru5_118_A,CCGATGTA,NYU_BMS_Melanoma_13059,pool1,SP491900A02 +1,LP196272A01,LP196272A01,NYU_BMS_Melanoma_13059_P4,N2,iTru7_115_03,TGAGCTAG,iTru5_119_A,CCTTCCAT,NYU_BMS_Melanoma_13059,pool2,LP196272A01 +1,SP704319A04,SP704319A04,NYU_BMS_Melanoma_13059_P4,P2,iTru7_115_04,CTGACACA,iTru5_120_A,CGGTAATC,NYU_BMS_Melanoma_13059,pool1,SP704319A04 +1,EP617441B01,EP617441B01,NYU_BMS_Melanoma_13059_P4,B4,iTru7_115_05,ACGGTCTT,iTru5_121_A,CTAGGTTG,NYU_BMS_Melanoma_13059,pool2,EP617441B01 +1,AP687591B04,AP687591B04,NYU_BMS_Melanoma_13059_P4,D4,iTru7_115_06,GCTGTTGT,iTru5_122_A,CTCGGTAA,NYU_BMS_Melanoma_13059,pool1,AP687591B04 +1,SP640978A02,SP640978A02,NYU_BMS_Melanoma_13059_P4,F4,iTru7_115_07,CACTAGCT,iTru5_123_A,CTGTGGTA,NYU_BMS_Melanoma_13059,pool2,SP640978A02 +1,EP981129A02,EP981129A02,NYU_BMS_Melanoma_13059_P4,H4,iTru7_115_08,TGGTACAG,iTru5_124_A,GTACGATC,NYU_BMS_Melanoma_13059,pool1,EP981129A02 +1,EP455763B04,EP455763B04,NYU_BMS_Melanoma_13059_P4,J4,iTru7_115_09,AGCACTTC,iTru5_113_B,TCTGTCGT,NYU_BMS_Melanoma_13059,pool2,EP455763B04 +1,EP339057B02,EP339057B02,NYU_BMS_Melanoma_13059_P4,L4,iTru7_115_10,GCATACAG,iTru5_114_B,GAATGGCA,NYU_BMS_Melanoma_13059,pool1,EP339057B02 +1,SP491897A02,SP491897A02,NYU_BMS_Melanoma_13059_P4,N4,iTru7_115_11,CTTAGGAC,iTru5_115_B,GTGTGTTC,NYU_BMS_Melanoma_13059,pool2,SP491897A02 +1,EP980752B04,EP980752B04,NYU_BMS_Melanoma_13059_P4,P4,iTru7_211_01,GCTTCTTG,iTru5_116_B,GGTTGAAC,NYU_BMS_Melanoma_13059,pool1,EP980752B04 +1,LP128539A01,LP128539A01,NYU_BMS_Melanoma_13059_P4,B6,iTru7_101_01,ACGTTACC,iTru5_117_B,GGCTCAAT,NYU_BMS_Melanoma_13059,pool2,LP128539A01 +1,EP996831B04,EP996831B04,NYU_BMS_Melanoma_13059_P4,D6,iTru7_101_02,CTGTGTTG,iTru5_118_B,TTCGCCAT,NYU_BMS_Melanoma_13059,pool1,EP996831B04 +1,EP273332B04,EP273332B04,NYU_BMS_Melanoma_13059_P4,F6,iTru7_101_03,TGAGGTGT,iTru5_119_B,GTCCTTGA,NYU_BMS_Melanoma_13059,pool2,EP273332B04 +1,EP483291B04,EP483291B04,NYU_BMS_Melanoma_13059_P4,H6,iTru7_101_04,GATCCATG,iTru5_120_B,TAACGTCG,NYU_BMS_Melanoma_13059,pool1,EP483291B04 +1,EP393715B01,EP393715B01,NYU_BMS_Melanoma_13059_P4,J6,iTru7_101_05,GCCTATCA,iTru5_121_B,GAGACCAA,NYU_BMS_Melanoma_13059,pool2,EP393715B01 +1,EP617440B01,EP617440B01,NYU_BMS_Melanoma_13059_P4,L6,iTru7_101_06,AACAACCG,iTru5_122_B,GATCAAGG,NYU_BMS_Melanoma_13059,pool1,EP617440B01 +1,EP729434A01,EP729434A01,NYU_BMS_Melanoma_13059_P4,N6,iTru7_101_07,ACTCGTTG,iTru5_123_B,GCAACCAT,NYU_BMS_Melanoma_13059,pool2,EP729434A01 +1,SP645141A03,SP645141A03,NYU_BMS_Melanoma_13059_P4,P6,iTru7_101_08,CCTATGGT,iTru5_124_B,AAGGAGAC,NYU_BMS_Melanoma_13059,pool1,SP645141A03 +1,BLANK4_4A,BLANK4.4A,NYU_BMS_Melanoma_13059_P4,B8,iTru7_101_09,TGTACACC,iTru5_113_C,ATCGGAGA,NYU_BMS_Melanoma_13059,pool2,BLANK4.4A +1,BLANK4_4B,BLANK4.4B,NYU_BMS_Melanoma_13059_P4,D8,iTru7_101_10,GTATGCTG,iTru5_114_C,ATGCGCTT,NYU_BMS_Melanoma_13059,pool1,BLANK4.4B +1,BLANK4_4C,BLANK4.4C,NYU_BMS_Melanoma_13059_P4,F8,iTru7_101_11,TGATGTCC,iTru5_115_C,CAACCGTA,NYU_BMS_Melanoma_13059,pool2,BLANK4.4C +1,BLANK4_4D,BLANK4.4D,NYU_BMS_Melanoma_13059_P4,H8,iTru7_101_12,GTCCTTCT,iTru5_116_C,CACTTCAC,NYU_BMS_Melanoma_13059,pool1,BLANK4.4D +1,BLANK4_4E,BLANK4.4E,NYU_BMS_Melanoma_13059_P4,J8,iTru7_102_01,ATAAGGCG,iTru5_117_C,CAGCTAGA,NYU_BMS_Melanoma_13059,pool2,BLANK4.4E +1,BLANK4_4F,BLANK4.4F,NYU_BMS_Melanoma_13059_P4,L8,iTru7_102_02,CTTACCTG,iTru5_118_C,CCGTTATG,NYU_BMS_Melanoma_13059,pool1,BLANK4.4F +1,BLANK4_4G,BLANK4.4G,NYU_BMS_Melanoma_13059_P4,N8,iTru7_102_03,CGTTGCAA,iTru5_119_C,CGAACAAC,NYU_BMS_Melanoma_13059,pool2,BLANK4.4G +1,BLANK4_4H,BLANK4.4H,NYU_BMS_Melanoma_13059_P4,P8,iTru7_102_04,GATTCAGC,iTru5_120_C,CGTAGATG,NYU_BMS_Melanoma_13059,pool1,BLANK4.4H +1,SP232114A04,SP232114A04,NYU_BMS_Melanoma_13059_P4,B10,iTru7_102_05,TCACGTTC,iTru5_121_C,CTATGCCT,NYU_BMS_Melanoma_13059,pool2,SP232114A04 +1,EP393714B01,EP393714B01,NYU_BMS_Melanoma_13059_P4,D10,iTru7_102_06,TGTGCGTT,iTru5_122_C,CTGATGAG,NYU_BMS_Melanoma_13059,pool1,EP393714B01 +1,EP533388B01,EP533388B01,NYU_BMS_Melanoma_13059_P4,F10,iTru7_102_07,TAGTTGCG,iTru5_123_C,CTTCCTTC,NYU_BMS_Melanoma_13059,pool2,EP533388B01 +1,EP724905B01,EP724905B01,NYU_BMS_Melanoma_13059_P4,H10,iTru7_102_08,AAGAGCCA,iTru5_124_C,GTCTCATC,NYU_BMS_Melanoma_13059,pool1,EP724905B01 +1,EP282108B01,EP282108B01,NYU_BMS_Melanoma_13059_P4,J10,iTru7_102_09,ACAGCTCA,iTru5_113_D,GCGCATAT,NYU_BMS_Melanoma_13059,pool2,EP282108B01 +1,EP282107B01,EP282107B01,NYU_BMS_Melanoma_13059_P4,L10,iTru7_102_10,GTTAAGGC,iTru5_114_D,GAAGATCC,NYU_BMS_Melanoma_13059,pool1,EP282107B01 +1,EP001625B01,EP001625B01,NYU_BMS_Melanoma_13059_P4,N10,iTru7_102_11,AAGCCACA,iTru5_115_D,GTTGGCAT,NYU_BMS_Melanoma_13059,pool2,EP001625B01 +1,EP073209B02,EP073209B02,NYU_BMS_Melanoma_13059_P4,P10,iTru7_102_12,ACACGGTT,iTru5_116_D,GTGAATGG,NYU_BMS_Melanoma_13059,pool1,EP073209B02 +1,SP232079A01,SP232079A01,NYU_BMS_Melanoma_13059_P4,B12,iTru7_103_01,CAGCGATT,iTru5_117_D,GTATCGAG,NYU_BMS_Melanoma_13059,pool2,SP232079A01 +1,EP772145A02,EP772145A02,NYU_BMS_Melanoma_13059_P4,D12,iTru7_103_02,TAGTGACC,iTru5_118_D,TGCAAGAC,NYU_BMS_Melanoma_13059,pool1,EP772145A02 +1,AP771472A04,AP771472A04,NYU_BMS_Melanoma_13059_P4,F12,iTru7_103_03,CGAGACTA,iTru5_119_D,GAGTGTGT,NYU_BMS_Melanoma_13059,pool2,AP771472A04 +1,AP223470B01,AP223470B01,NYU_BMS_Melanoma_13059_P4,H12,iTru7_103_04,GACATGGT,iTru5_120_D,TAAGCGCA,NYU_BMS_Melanoma_13059,pool1,AP223470B01 +1,SP404412A02,SP404412A02,NYU_BMS_Melanoma_13059_P4,J12,iTru7_103_05,GCATGTCT,iTru5_121_D,TAGCAGGA,NYU_BMS_Melanoma_13059,pool2,SP404412A02 +1,EP772143A02,EP772143A02,NYU_BMS_Melanoma_13059_P4,L12,iTru7_103_06,ACTCCATC,iTru5_122_D,GACTACGA,NYU_BMS_Melanoma_13059,pool1,EP772143A02 +1,SP408629A01,SP408629A01,NYU_BMS_Melanoma_13059_P4,N12,iTru7_103_07,TGTGACTG,iTru5_123_D,GACGTCAT,NYU_BMS_Melanoma_13059,pool2,SP408629A01 +1,EP749735A07,EP749735A07,NYU_BMS_Melanoma_13059_P4,P12,iTru7_103_08,CGAAGAAC,iTru5_124_D,AAGAGGCA,NYU_BMS_Melanoma_13059,pool1,EP749735A07 +1,EP846485A01,EP846485A01,NYU_BMS_Melanoma_13059_P4,B14,iTru7_103_09,GGTGTCTT,iTru5_113_E,ATCGTCTC,NYU_BMS_Melanoma_13059,pool2,EP846485A01 +1,EP808109A01,EP808109A01,NYU_BMS_Melanoma_13059_P4,D14,iTru7_103_10,AAGAAGGC,iTru5_114_E,ATGGCGAT,NYU_BMS_Melanoma_13059,pool1,EP808109A01 +1,SP416130A04,SP416130A04,NYU_BMS_Melanoma_13059_P4,F14,iTru7_103_11,AGGTTCGA,iTru5_115_E,CAAGAAGC,NYU_BMS_Melanoma_13059,pool2,SP416130A04 +1,EP882752A01,EP882752A01,NYU_BMS_Melanoma_13059_P4,H14,iTru7_103_12,CATGTTCC,iTru5_116_E,CAGAACTG,NYU_BMS_Melanoma_13059,pool1,EP882752A01 +1,AP953594A02,AP953594A02,NYU_BMS_Melanoma_13059_P4,J14,iTru7_104_01,GTGCCATA,iTru5_117_E,CAGGTAAG,NYU_BMS_Melanoma_13059,pool2,AP953594A02 +1,AP046324B02,AP046324B02,NYU_BMS_Melanoma_13059_P4,L14,iTru7_104_02,CCTTGTAG,iTru5_118_E,CCTACCTA,NYU_BMS_Melanoma_13059,pool1,AP046324B02 +1,AP891020A04,AP891020A04,NYU_BMS_Melanoma_13059_P4,N14,iTru7_104_03,GCTGGATT,iTru5_119_E,CGAAGTCA,NYU_BMS_Melanoma_13059,pool2,AP891020A04 +1,EP790023A01,EP790023A01,NYU_BMS_Melanoma_13059_P4,P14,iTru7_104_04,TAACGAGG,iTru5_120_E,CGTCTTCA,NYU_BMS_Melanoma_13059,pool1,EP790023A01 +1,EP657386A01,EP657386A01,NYU_BMS_Melanoma_13059_P4,B16,iTru7_104_05,ATGGTTGC,iTru5_121_E,CTCAAGCT,NYU_BMS_Melanoma_13059,pool2,EP657386A01 +1,EP805337A01,EP805337A01,NYU_BMS_Melanoma_13059_P4,D16,iTru7_104_06,CCTATACC,iTru5_122_E,CTGCCATA,NYU_BMS_Melanoma_13059,pool1,EP805337A01 +1,EP927458A04,EP927458A04,NYU_BMS_Melanoma_13059_P4,F16,iTru7_104_07,TTAGGTCG,iTru5_123_E,CTTGCTAG,NYU_BMS_Melanoma_13059,pool2,EP927458A04 +1,AP173299B04,AP173299B04,NYU_BMS_Melanoma_13059_P4,H16,iTru7_104_08,GCAAGATC,iTru5_124_E,GTCTGCAA,NYU_BMS_Melanoma_13059,pool1,AP173299B04 +1,EP768164A02,EP768164A02,NYU_BMS_Melanoma_13059_P4,J16,iTru7_104_09,AGAGCCTT,iTru5_113_F,GCTACTCT,NYU_BMS_Melanoma_13059,pool2,EP768164A02 +1,EP886422A01,EP886422A01,NYU_BMS_Melanoma_13059_P4,L16,iTru7_104_10,GCAATGGA,iTru5_114_F,TACAGAGC,NYU_BMS_Melanoma_13059,pool1,EP886422A01 +1,AP103463B01,AP103463B01,NYU_BMS_Melanoma_13059_P4,N16,iTru7_104_11,CTGGAGTA,iTru5_115_F,GGTCGTAT,NYU_BMS_Melanoma_13059,pool2,AP103463B01 +1,AP744361A02,AP744361A02,NYU_BMS_Melanoma_13059_P4,P16,iTru7_104_12,GAACATCG,iTru5_116_F,GTCGTTAC,NYU_BMS_Melanoma_13059,pool1,AP744361A02 +1,AP065292B01,AP065292B01,NYU_BMS_Melanoma_13059_P4,B18,iTru7_105_01,GCACAACT,iTru5_117_F,TTCACGGA,NYU_BMS_Melanoma_13059,pool2,AP065292B01 +1,SP257517A04,SP257517A04,NYU_BMS_Melanoma_13059_P4,D18,iTru7_105_02,TTCTCTCG,iTru5_118_F,TGCTTGCT,NYU_BMS_Melanoma_13059,pool1,SP257517A04 +1,EP790021A04,EP790021A04,NYU_BMS_Melanoma_13059_P4,F18,iTru7_105_03,AACGGTCA,iTru5_119_F,TCTTACGG,NYU_BMS_Melanoma_13059,pool2,EP790021A04 +1,EP675075A04,EP675075A04,NYU_BMS_Melanoma_13059_P4,H18,iTru7_105_04,ACAGACCT,iTru5_120_F,TCCTCATG,NYU_BMS_Melanoma_13059,pool1,EP675075A04 +1,SP388683A02,SP388683A02,NYU_BMS_Melanoma_13059_P4,J18,iTru7_105_05,TCTCTTCC,iTru5_121_F,GATGTCGA,NYU_BMS_Melanoma_13059,pool2,SP388683A02 +1,SP232309A01,SP232309A01,NYU_BMS_Melanoma_13059_P4,L18,iTru7_105_06,AGTGTTGG,iTru5_122_F,GAAGTGCT,NYU_BMS_Melanoma_13059,pool1,SP232309A01 +1,EP899038A04,EP899038A04,NYU_BMS_Melanoma_13059_P4,N18,iTru7_105_07,TGGCATGT,iTru5_123_F,TCACTCGA,NYU_BMS_Melanoma_13059,pool2,EP899038A04 +1,EP636802A01,EP636802A01,NYU_BMS_Melanoma_13059_P4,P18,iTru7_105_08,AGAAGCGT,iTru5_124_F,ACGCAGTA,NYU_BMS_Melanoma_13059,pool1,EP636802A01 +1,AP046327B02,AP046327B02,NYU_BMS_Melanoma_13059_P4,B20,iTru7_105_09,AGCGGAAT,iTru5_113_G,ATCTCCTG,NYU_BMS_Melanoma_13059,pool2,AP046327B02 +1,EP905975A04,EP905975A04,NYU_BMS_Melanoma_13059_P4,D20,iTru7_105_10,TAACCGGT,iTru5_114_G,ATGTGGAC,NYU_BMS_Melanoma_13059,pool1,EP905975A04 +1,SP410796A02,SP410796A02,NYU_BMS_Melanoma_13059_P4,F20,iTru7_105_11,CATGGAAC,iTru5_115_G,CAAGCCAA,NYU_BMS_Melanoma_13059,pool2,SP410796A02 +1,EP784608A01,EP784608A01,NYU_BMS_Melanoma_13059_P4,H20,iTru7_105_12,ATGGTCCA,iTru5_116_G,CAGACGTT,NYU_BMS_Melanoma_13059,pool1,EP784608A01 +1,EP808105A01,EP808105A01,NYU_BMS_Melanoma_13059_P4,J20,iTru7_106_01,CTTCTGAG,iTru5_117_G,CATACTCG,NYU_BMS_Melanoma_13059,pool2,EP808105A01 +1,SP331134A04,SP331134A04,NYU_BMS_Melanoma_13059_P4,L20,iTru7_106_02,AACCGAAG,iTru5_118_G,CCTGTCAA,NYU_BMS_Melanoma_13059,pool1,SP331134A04 +1,EP718688A01,EP718688A01,NYU_BMS_Melanoma_13059_P4,N20,iTru7_106_03,TTCGTACC,iTru5_119_G,CGAGTTAG,NYU_BMS_Melanoma_13059,pool2,EP718688A01 +1,SP232270A02,SP232270A02,NYU_BMS_Melanoma_13059_P4,P20,iTru7_106_04,CTGTTAGG,iTru5_120_G,CTAACCTG,NYU_BMS_Melanoma_13059,pool1,SP232270A02 +1,EP970001A01,EP970001A01,NYU_BMS_Melanoma_13059_P4,B22,iTru7_106_05,CACAAGTC,iTru5_121_G,CTCCTAGT,NYU_BMS_Melanoma_13059,pool2,EP970001A01 +1,EP001624B01,EP001624B01,NYU_BMS_Melanoma_13059_P4,D22,iTru7_106_06,TCTTGACG,iTru5_122_G,CTGTACCA,NYU_BMS_Melanoma_13059,pool1,EP001624B01 +1,EP868682A01,EP868682A01,NYU_BMS_Melanoma_13059_P4,F22,iTru7_106_07,CGTCTTGT,iTru5_123_G,GCTACAAC,NYU_BMS_Melanoma_13059,pool2,EP868682A01 +1,EP927462A02,EP927462A02,NYU_BMS_Melanoma_13059_P4,H22,iTru7_106_08,CGTGATCA,iTru5_124_G,GTTCTTCG,NYU_BMS_Melanoma_13059,pool1,EP927462A02 +1,C3,C3,NYU_BMS_Melanoma_13059_P4,J22,iTru7_106_09,CCAAGTTG,iTru5_113_H,GAGAGTAC,NYU_BMS_Melanoma_13059,pool2,C3 +1,EP890158A02,EP890158A02,NYU_BMS_Melanoma_13059_P4,L22,iTru7_106_10,GTACCTTG,iTru5_114_H,GACACAGT,NYU_BMS_Melanoma_13059,pool1,EP890158A02 +1,EP023801B04,EP023801B04,NYU_BMS_Melanoma_13059_P4,N22,iTru7_106_11,GACTATGC,iTru5_115_H,TTGCTTGG,NYU_BMS_Melanoma_13059,pool2,EP023801B04 +1,EP400447B04,EP400447B04,NYU_BMS_Melanoma_13059_P4,P22,iTru7_106_12,TGGATCAC,iTru5_116_H,GTAGTACC,NYU_BMS_Melanoma_13059,pool1,EP400447B04 +1,EP385379B01,EP385379B01,NYU_BMS_Melanoma_13059_P4,B24,iTru7_107_01,CTCTGGTT,iTru5_117_H,TTCGGCTA,NYU_BMS_Melanoma_13059,pool2,EP385379B01 +1,EP385387B01,EP385387B01,NYU_BMS_Melanoma_13059_P4,D24,iTru7_107_02,GTTCATGG,iTru5_118_H,TGCACTTG,NYU_BMS_Melanoma_13059,pool1,EP385387B01 +1,EP385384B01,EP385384B01,NYU_BMS_Melanoma_13059_P4,F24,iTru7_107_03,GCTGTAAG,iTru5_119_H,TAGAACGC,NYU_BMS_Melanoma_13059,pool2,EP385384B01 +1,SP754514A04,SP754514A04,NYU_BMS_Melanoma_13059_P4,H24,iTru7_107_04,GTCGAAGA,iTru5_120_H,GATTGTCC,NYU_BMS_Melanoma_13059,pool1,SP754514A04 +1,SP415025A01,SP415025A01,NYU_BMS_Melanoma_13059_P4,J24,iTru7_107_05,GAGCTCAA,iTru5_121_H,GATGCTAC,NYU_BMS_Melanoma_13059,pool2,SP415025A01 +1,SP415023A02,SP415023A02,NYU_BMS_Melanoma_13059_P4,L24,iTru7_107_06,TGAACCTG,iTru5_122_H,GAACGGTT,NYU_BMS_Melanoma_13059,pool1,SP415023A02 +1,EP400448B04,EP400448B04,NYU_BMS_Melanoma_13059_P4,N24,iTru7_107_07,CCGACTAT,iTru5_123_H,CTCTTGTC,NYU_BMS_Melanoma_13059,pool2,EP400448B04 +1,EP479894B04,EP479894B04,NYU_BMS_Melanoma_13059_P4,P24,iTru7_107_08,AGCTAACC,iTru5_124_H,AACGCCTT,NYU_BMS_Melanoma_13059,pool1,EP479894B04,,,,,,,,,,, +,,,,,,,,,,, +[Bioinformatics],,,,,,,,,,, +Sample_Project,QiitaID,BarcodesAreRC,ForwardAdapter,ReverseAdapter,HumanFiltering,library_construction_protocol,experiment_design_description,,,, +NYU_BMS_Melanoma_13059,13059,False,AACC,GGTT,False,Nextera,Equipment,,,, +Feist_11661,11661,False,AACC,GGTT,False,Nextera,Equipment,,,, +Gerwick_6123,6123,False,AACC,GGTT,True,Nextera,Equipment,,,, +,,,,,,,,,,, +[Contact],,,,,,,,,,, +Email,Sample_Project,,,,,,,,,, +test@lol.com,Feist_11661,,,,,,,,,, +,,,,,,,,,,, diff --git a/tests/data/good-sample-sheet_w_context.csv b/tests/data/good-sample-sheet_w_context.csv new file mode 100644 index 00000000..fd68639e --- /dev/null +++ b/tests/data/good-sample-sheet_w_context.csv @@ -0,0 +1,819 @@ +[Header],,,,,,,,,,, +IEMFileVersion,4,,,,,,,,,, +SheetType,standard_metag,,,,,,,,,, +SheetVersion,101,,,,,,,,,, +Investigator Name,Knight,,,,,,,,,, +Experiment Name,RKL0042,,,,,,,,,, +Date,2/26/20,,,,,,,,,, +Workflow,GenerateFASTQ,,,,,,,,,, +Application,FASTQ Only,,,,,,,,,, +Assay,Metagenomic,,,,,,,,,, +Description,,,,,,,,,,, +Chemistry,Default,,,,,,,,,, +,,,,,,,,,,, +[Reads],,,,,,,,,,, +150,,,,,,,,,,, +150,,,,,,,,,,, +,,,,,,,,,,, +[Settings],,,,,,,,,,, +ReverseComplement,0,,,,,,,,,, +,,,,,,,,,,, +[Data],,,,,,,,,,, +Lane,Sample_ID,Sample_Name,Sample_Plate,well_id_384,I7_Index_ID,index,I5_Index_ID,index2,Sample_Project,syndna_pool_number,Well_description +1,CDPH-SAL__Salmonella__Typhi__MDL-143,CDPH-SAL..Salmonella..Typhi..MDL-143,Feist_11661_P40,A1,iTru7_107_07,CCGACTAT,iTru5_01_A,ACCGACAA,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-143 +1,CDPH-SAL_Salmonella_Typhi_MDL-144,CDPH-SAL.Salmonella.Typhi.MDL-144,Feist_11661_P40,C1,iTru7_107_08,CCGACTAT,iTru5_02_A,CTTCGCAA,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-144 +1,CDPH-SAL_Salmonella_Typhi_MDL-145,CDPH-SAL.Salmonella.Typhi.MDL-145,Feist_11661_P40,E1,iTru7_107_09,GCCTTGTT,iTru5_03_A,AACACCAC,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-145 +1,CDPH-SAL_Salmonella_Typhi_MDL-146,CDPH-SAL.Salmonella.Typhi.MDL-146,Feist_11661_P40,G1,iTru7_107_10,AACTTGCC,iTru5_04_A,CGTATCTC,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-146 +1,CDPH-SAL_Salmonella_Typhi_MDL-147,CDPH-SAL.Salmonella.Typhi.MDL-147,Feist_11661_P40,I1,iTru7_107_11,CAATGTGG,iTru5_05_A,GGTACGAA,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-147 +1,CDPH-SAL_Salmonella_Typhi_MDL-148,CDPH-SAL.Salmonella.Typhi.MDL-148,Feist_11661_P40,K1,iTru7_107_12,AAGGCTGA,iTru5_06_A,CGATCGAT,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-148 +1,CDPH-SAL_Salmonella_Typhi_MDL-149,CDPH-SAL.Salmonella.Typhi.MDL-149,Feist_11661_P40,M1,iTru7_108_01,TTACCGAG,iTru5_07_A,AAGACACC,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-149 +1,CDPH-SAL_Salmonella_Typhi_MDL-150,CDPH-SAL.Salmonella.Typhi.MDL-150,Feist_11661_P40,O1,iTru7_108_02,GTCCTAAG,iTru5_08_A,CATCTGCT,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-150 +1,CDPH-SAL_Salmonella_Typhi_MDL-151,CDPH-SAL.Salmonella.Typhi.MDL-151,Feist_11661_P40,A3,iTru7_108_03,GAAGGTTC,iTru5_09_A,CTCTCAGA,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-151 +1,CDPH-SAL_Salmonella_Typhi_MDL-152,CDPH-SAL.Salmonella.Typhi.MDL-152,Feist_11661_P40,C3,iTru7_108_04,GAAGAGGT,iTru5_10_A,TCGTCTGA,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-152 +1,CDPH-SAL_Salmonella_Typhi_MDL-153,CDPH-SAL.Salmonella.Typhi.MDL-153,Feist_11661_P40,E3,iTru7_108_05,TCTGAGAG,iTru5_11_A,CAATAGCC,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-153 +1,CDPH-SAL_Salmonella_Typhi_MDL-154,CDPH-SAL.Salmonella.Typhi.MDL-154,Feist_11661_P40,G3,iTru7_108_06,ACCGCATA,iTru5_12_A,CATTCGTC,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-154 +1,CDPH-SAL_Salmonella_Typhi_MDL-155,CDPH-SAL.Salmonella.Typhi.MDL-155,Feist_11661_P40,I3,iTru7_108_07,GAAGTACC,iTru5_01_B,AGTGGCAA,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-155 +1,CDPH-SAL_Salmonella_Typhi_MDL-156,CDPH-SAL.Salmonella.Typhi.MDL-156,Feist_11661_P40,K3,iTru7_108_08,CAGGTATC,iTru5_02_B,GTGGTATG,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-156 +1,CDPH-SAL_Salmonella_Typhi_MDL-157,CDPH-SAL.Salmonella.Typhi.MDL-157,Feist_11661_P40,M3,iTru7_108_09,TCTCTAGG,iTru5_03_B,TGAGCTGT,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-157 +1,CDPH-SAL_Salmonella_Typhi_MDL-158,CDPH-SAL.Salmonella.Typhi.MDL-158,Feist_11661_P40,O3,iTru7_108_10,AAGCACTG,iTru5_04_B,CGTCAAGA,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-158 +1,CDPH-SAL_Salmonella_Typhi_MDL-159,CDPH-SAL.Salmonella.Typhi.MDL-159,Feist_11661_P40,A5,iTru7_108_11,CCAAGCAA,iTru5_05_B,AAGCATCG,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-159 +1,CDPH-SAL_Salmonella_Typhi_MDL-160,CDPH-SAL.Salmonella.Typhi.MDL-160,Feist_11661_P40,C5,iTru7_108_12,TGTTCGAG,iTru5_06_B,TACTCCAG,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-160 +1,CDPH-SAL_Salmonella_Typhi_MDL-161,CDPH-SAL.Salmonella.Typhi.MDL-161,Feist_11661_P40,E5,iTru7_109_01,CTCGTCTT,iTru5_07_B,GATACCTG,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-161 +1,CDPH-SAL_Salmonella_Typhi_MDL-162,CDPH-SAL.Salmonella.Typhi.MDL-162,Feist_11661_P40,G5,iTru7_109_02,CGAACTGT,iTru5_08_B,ACCTCTTC,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-162 +1,CDPH-SAL_Salmonella_Typhi_MDL-163,CDPH-SAL.Salmonella.Typhi.MDL-163,Feist_11661_P40,I5,iTru7_109_03,CATTCGGT,iTru5_09_B,ACGGACTT,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-163 +1,CDPH-SAL_Salmonella_Typhi_MDL-164,CDPH-SAL.Salmonella.Typhi.MDL-164,Feist_11661_P40,K5,iTru7_109_04,TCGGTTAC,iTru5_10_B,CATGTGTG,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-164 +1,CDPH-SAL_Salmonella_Typhi_MDL-165,CDPH-SAL.Salmonella.Typhi.MDL-165,Feist_11661_P40,M5,iTru7_109_05,AAGTCGAG,iTru5_11_B,TGCCTCAA,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-165 +1,CDPH-SAL_Salmonella_Typhi_MDL-166,CDPH-SAL.Salmonella.Typhi.MDL-166,Feist_11661_P40,O5,iTru7_109_06,TATCGGTC,iTru5_12_B,ATCTGACC,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-166 +1,CDPH-SAL_Salmonella_Typhi_MDL-167,CDPH-SAL.Salmonella.Typhi.MDL-167,Feist_11661_P40,A7,iTru7_109_07,TATTCGCC,iTru5_01_C,CACAGACT,Feist_11661,pool1,CDPH-SAL_Salmonella Typhi_MDL-167 +1,CDPH-SAL_Salmonella_Typhi_MDL-168,CDPH-SAL.Salmonella.Typhi.MDL-168,Feist_11661_P40,C7,iTru7_109_08,GTATTGGC,iTru5_02_C,CACTGTAG,Feist_11661,pool2,CDPH-SAL_Salmonella Typhi_MDL-168 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+1,JM-Metabolic__GN0_2254,JM-Metabolic.GN0.2254,Feist_11661_P41_diluted,E22,iTru7_208_05,TCCGAGTT,iTru5_23_G,ATTCCGCT,Feist_11661,pool1,JM-Metabolic__GN0_2254 +1,JM-Metabolic__GN0_2277,JM-Metabolic.GN0.2277,Feist_11661_P41_diluted,G22,iTru7_208_06,ACCTAAGG,iTru5_24_G,ATCCTTCC,Feist_11661,pool2,JM-Metabolic__GN0_2277 +1,JM-Metabolic__GN0_2290,JM-Metabolic.GN0.2290,Feist_11661_P41,I22,iTru7_208_07,TTGGACGT,iTru5_13_H,GCTTCACA,Feist_11661,pool1,JM-Metabolic__GN0_2290 +1,JM-Metabolic__GN0_2337,JM-Metabolic.GN0.2337,Feist_11661_P41_diluted,K22,iTru7_208_08,GATAGCGA,iTru5_14_H,CTTCGGTT,Feist_11661,pool2,JM-Metabolic__GN0_2337 +1,JM-Metabolic__GN0_2317,JM-Metabolic.GN0.2317,Feist_11661_P41_diluted,M22,iTru7_208_09,TTGGTGAG,iTru5_15_H,CATGGATC,Feist_11661,pool1,JM-Metabolic__GN0_2317 +1,JM-Metabolic__GN0_2354,JM-Metabolic.GN0.2354,Feist_11661_P41_diluted,O22,iTru7_208_10,AACTGGTG,iTru5_16_H,GTCAACAG,Feist_11661,pool2,JM-Metabolic__GN0_2354 +1,JM-Metabolic__GN0_2375,JM-Metabolic.GN0.2375,Feist_11661_P41_diluted,A24,iTru7_208_11,TAGCCGAA,iTru5_17_H,AATTCCGG,Feist_11661,pool1,JM-Metabolic__GN0_2375 +1,JM-Metabolic__GN0_2380,JM-Metabolic.GN0.2380,Feist_11661_P41_diluted,C24,iTru7_208_12,TGCGAACT,iTru5_18_H,GGCGAATA,Feist_11661,pool2,JM-Metabolic__GN0_2380 +1,JM-Metabolic__GN0_2393,JM-Metabolic.GN0.2393,Feist_11661_P41_diluted,E24,iTru7_209_01,GACTTAGG,iTru5_19_H,AGGAGGTT,Feist_11661,pool1,JM-Metabolic__GN0_2393 +1,JM-Metabolic__GN0_2404,JM-Metabolic.GN0.2404,Feist_11661_P41_diluted,G24,iTru7_209_02,ACACCAGT,iTru5_20_H,ACTCTGAG,Feist_11661,pool2,JM-Metabolic__GN0_2404 +1,5B,5B,Gerwick_tubes,I24,iTru7_209_03,CCTGATTG,iTru5_21_H,GCCTTCTT,Gerwick_6123,pool1,5B +1,6A,6A,Gerwick_tubes,K24,iTru7_209_04,TTGTGTGC,iTru5_22_H,TGGACCAT,Gerwick_6123,pool2,6A +1,BLANK_41_12G,BLANK.41.12G,Feist_11661_P41,M24,iTru7_209_05,TACCACAG,iTru5_23_H,GCATAGTC,Gerwick_6123,pool1,BLANK.41.12G +1,BLANK_41_12H,BLANK.41.12H,Feist_11661_P41,O24,iTru7_209_06,ATTCGAGG,iTru5_24_H,TACACACG,Feist_11661,pool2,BLANK.41.12H +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_14,Deoxyribose.PALE.ALE.MG1655.BOP27.4.14,Feist_11661_P42,B1,iTru7_209_07,GCACGTAA,iTru5_101_A,AACAACCG,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_BOP27_4_14 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_23,Deoxyribose.PALE.ALE.MG1655.BOP27.4.23,Feist_11661_P42,D1,iTru7_209_08,GTGTGACA,iTru5_102_A,AAGCCTGA,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_BOP27_4_23 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_48,Deoxyribose.PALE.ALE.MG1655.BOP27.4.48,Feist_11661_P42,F1,iTru7_209_09,CTGGTTCT,iTru5_103_A,AAGGACCA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_BOP27_4_48 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_6_21,Deoxyribose.PALE.ALE.MG1655.BOP27.6.21,Feist_11661_P42,H1,iTru7_209_10,ACTGTGTC,iTru5_104_A,ACAACGTG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_BOP27_6_21 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_6_35,Deoxyribose.PALE.ALE.MG1655.BOP27.6.35,Feist_11661_P42,J1,iTru7_209_11,CCATACGT,iTru5_105_A,ACGAACGA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_BOP27_6_35 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_13,Deoxyribose.PALE.ALE.MG1655.BOP27.10.13,Feist_11661_P42,L1,iTru7_209_12,GGTACTAC,iTru5_106_A,ACGTCCAA,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_BOP27_10_13 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_28,Deoxyribose.PALE.ALE.MG1655.BOP27.10.28,Feist_11661_P42,N1,iTru7_210_01,CAGTCCAA,iTru5_107_A,ACTGGTGT,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_BOP27_10_28 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_51,Deoxyribose.PALE.ALE.MG1655.BOP27.10.51,Feist_11661_P42,P1,iTru7_210_02,TCGTAGTC,iTru5_108_A,AGATCGTC,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_BOP27_10_51 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_19,Deoxyribose.PALE.ALE.MG1655.Lib4.18.19,Feist_11661_P42,B3,iTru7_210_03,TCGAGTGA,iTru5_109_A,AGCGAGAT,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_18_19 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_59,Deoxyribose.PALE.ALE.MG1655.Lib4.18.59,Feist_11661_P42,D3,iTru7_210_04,TGTAGCCA,iTru5_110_A,AGGATAGC,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_18_59 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_35,Deoxyribose.PALE.ALE.MG1655.Lib4.18.35,Feist_11661_P42,F3,iTru7_210_05,TGCAGGTA,iTru5_111_A,AGGTGTTG,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_18_35 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_16,Deoxyribose.PALE.ALE.MG1655.Lib4.20.16,Feist_11661_P42,H3,iTru7_210_06,CTAGGTGA,iTru5_112_A,AGTCTTGG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_20_16 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_43,Deoxyribose.PALE.ALE.MG1655.Lib4.20.43,Feist_11661_P42,J3,iTru7_210_07,CTCCATGT,iTru5_101_B,GGTTGGTA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_20_43 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_71,Deoxyribose.PALE.ALE.MG1655.Lib4.20.71,Feist_11661_P42,L3,iTru7_210_08,CTTACAGC,iTru5_102_B,GGAGGAAT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_20_71 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_16,Deoxyribose.PALE.ALE.MG1655.Lib4.22.16,Feist_11661_P42,N3,iTru7_210_09,CGTATTCG,iTru5_103_B,GTAAGGTG,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_22_16 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_28,Deoxyribose.PALE.ALE.MG1655.Lib4.22.28,Feist_11661_P42,P3,iTru7_210_10,ATTCTGGC,iTru5_104_B,GGTGTACA,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_22_28 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_52,Deoxyribose.PALE.ALE.MG1655.Lib4.22.52,Feist_11661_P42,B5,iTru7_210_11,TACCAGGA,iTru5_105_B,GGATGTAG,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_22_52 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_9,Deoxyribose.PALE.ALE.MG1655.Lib4.24.9,Feist_11661_P42,D5,iTru7_210_12,TACATCGG,iTru5_106_B,GTCCTGTT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_24_9 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_24,Deoxyribose.PALE.ALE.MG1655.Lib4.24.24,Feist_11661_P42,F5,iTru7_301_01,GTGGTGTT,iTru5_107_B,GTACCACA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_24_24 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_52,Deoxyribose.PALE.ALE.MG1655.Lib4.24.52,Feist_11661_P42,H5,iTru7_301_02,CGCATGAT,iTru5_108_B,GATCTCAG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_24_52 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_6,Deoxyribose.PALE.ALE.MG1655.Lib4.26.6,Feist_11661_P42,J5,iTru7_301_03,AGTCGACA,iTru5_109_B,GAGCTCTA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_26_6 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_27,Deoxyribose.PALE.ALE.MG1655.Lib4.26.27,Feist_11661_P42,L5,iTru7_301_04,GTGAGCTT,iTru5_110_B,TACTAGCG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_26_27 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_69,Deoxyribose.PALE.ALE.MG1655.Lib4.26.69,Feist_11661_P42,N5,iTru7_301_05,GACATTCC,iTru5_111_B,GCACACAA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_26_69 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_13,Deoxyribose.PALE.ALE.MG1655.Lib4.28.13,Feist_11661_P42,P5,iTru7_301_06,AGTTCGTC,iTru5_112_B,GAATCACC,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_28_13 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_28,Deoxyribose.PALE.ALE.MG1655.Lib4.28.28,Feist_11661_P42,B7,iTru7_301_07,TAATGCCG,iTru5_101_C,AACAGCGA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_28_28 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_53,Deoxyribose.PALE.ALE.MG1655.Lib4.28.53,Feist_11661_P42,D7,iTru7_301_08,CGACCATT,iTru5_102_C,AAGCGACT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_28_53 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_7,Deoxyribose.PALE.ALE.MG1655.Lib4.30.7,Feist_11661_P42,F7,iTru7_301_09,CTGAAGCT,iTru5_103_C,AAGGCGTA,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_30_7 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_22,Deoxyribose.PALE.ALE.MG1655.Lib4.30.22,Feist_11661_P42,H7,iTru7_301_10,TTGAGGCA,iTru5_104_C,ACACCGAT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_30_22 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_60,Deoxyribose.PALE.ALE.MG1655.Lib4.30.60,Feist_11661_P42,J7,iTru7_301_11,GATCGAGT,iTru5_105_C,ACGAATCC,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_30_60 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_6,Deoxyribose.PALE.ALE.MG1655.Lib4.32.6,Feist_11661_P42,L7,iTru7_301_12,ATACTCCG,iTru5_106_C,ACTACGGT,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_32_6 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_20,Deoxyribose.PALE.ALE.MG1655.Lib4.32.20,Feist_11661_P42,N7,iTru7_302_01,AAGTCCGT,iTru5_107_C,AGAAGCCT,Feist_11661,pool1,Deoxyribose PALE ALE _MG1655_Lib4_32_20 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_56,Deoxyribose.PALE.ALE.MG1655.Lib4.32.56,Feist_11661_P42,P7,iTru7_302_02,TAGCGTCT,iTru5_108_C,AGATTGCG,Feist_11661,pool2,Deoxyribose PALE ALE _MG1655_Lib4_32_56 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.1.24,Feist_11661_P42,B9,iTru7_302_03,TGACGCAT,iTru5_109_C,AGCGTGTA,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_24 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.1.57,Feist_11661_P42,D9,iTru7_302_04,AGCGTGTT,iTru5_110_C,AGGCTGAA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_57 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.1.69,Feist_11661_P42,F9,iTru7_302_05,TGCACCAA,iTru5_111_C,AGGTTCCT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_69 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.3.23,Feist_11661_P42,H9,iTru7_302_06,ATCACACG,iTru5_112_C,AGTGACCT,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.3.50,Feist_11661_P42,J9,iTru7_302_07,ATGCCTGT,iTru5_101_D,GGTTAGCT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_50 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.3.61,Feist_11661_P42,L9,iTru7_302_08,ACCTGACT,iTru5_102_D,GTAGCGTA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_61 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.5.22,Feist_11661_P42,N9,iTru7_302_09,GCTTCGAA,iTru5_103_D,GGACTACT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_22 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.5.36,Feist_11661_P42,P9,iTru7_302_10,CGGTCATA,iTru5_104_D,TGGTTCGA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_36 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.5.46,Feist_11661_P42,B11,iTru7_302_11,GTTAGACG,iTru5_105_D,GGAGTCTT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_46 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.7.23,Feist_11661_P42,D11,iTru7_302_12,TCTAACGC,iTru5_106_D,GGATTCAC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.7.41,Feist_11661_P42,F11,iTru7_303_01,ATAGCGGT,iTru5_107_D,TCGGATTC,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_41 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.7.51,Feist_11661_P42,H11,iTru7_303_02,GGACCTAT,iTru5_108_D,GAGCAATC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_51 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.17.25,Feist_11661_P42,J11,iTru7_303_03,CGATGCTT,iTru5_109_D,GATCCACT,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.17.58,Feist_11661_P42,L11,iTru7_303_04,GAGCTTGT,iTru5_110_D,GAAGACTG,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_58 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.17.64,Feist_11661_P42,N11,iTru7_303_05,GTGAAGTG,iTru5_111_D,GCCACTTA,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_64 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.19.25,Feist_11661_P42,P11,iTru7_303_06,GAGTGGTT,iTru5_112_D,TCCATTGC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.19.55,Feist_11661_P42,B13,iTru7_303_07,TGATACGC,iTru5_101_E,AACAGTCC,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_55 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.19.63,Feist_11661_P42,D13,iTru7_303_08,AGCAGATG,iTru5_102_E,AAGCTCAC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_63 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.21.23,Feist_11661_P42,F13,iTru7_303_09,CCAGTGTT,iTru5_103_E,AAGTCCTC,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.21.46,Feist_11661_P42,H13,iTru7_303_10,ATTCCTCC,iTru5_104_E,ACACTCTG,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_46 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.21.51,Feist_11661_P42,J13,iTru7_303_11,CTAACTCG,iTru5_105_E,ACGGTACA,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_51 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.29.25,Feist_11661_P42,L13,iTru7_303_12,GATGAGAC,iTru5_106_E,ACTCCTAC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.29.49,Feist_11661_P42,N13,iTru7_304_01,TCAGGCTT,iTru5_107_E,AGAGGATG,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_49 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.29.57,Feist_11661_P42,P13,iTru7_304_02,GTTCTCGT,iTru5_108_E,AGCCGTAA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_57 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.31.24,Feist_11661_P42,B15,iTru7_304_03,ATCGATCG,iTru5_109_E,AGCTTCAG,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_24 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.31.42,Feist_11661_P42,D15,iTru7_304_04,CCTCAGTT,iTru5_110_E,AGGTAGGA,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_42 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.31.62,Feist_11661_P42,F15,iTru7_304_05,ACTGCTAG,iTru5_111_E,AGTACACG,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_62 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.33.21,Feist_11661_P42,H15,iTru7_304_06,TCCGTGAA,iTru5_112_E,AGTGCATC,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_21 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.33.41,Feist_11661_P42,J15,iTru7_304_07,GGATTCGT,iTru5_101_F,TTGGACTG,Feist_11661,pool1,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_41 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50,AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.33.50,Feist_11661_P42,L15,iTru7_304_08,GGTCAGAT,iTru5_102_F,GTCGATTG,Feist_11661,pool2,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_50 +1,JM-Metabolic__GN02514,JM-Metabolic.GN02514,Feist_11661_P42,N15,iTru7_304_09,TCGTGGAT,iTru5_103_F,GGCATTCT,Feist_11661,pool1,JM-Metabolic__GN02514 +1,JM-Metabolic__GN02529,JM-Metabolic.GN02529,Feist_11661_P42_diluted,P15,iTru7_304_10,CGTGTGTA,iTru5_104_F,TGGTATCC,Feist_11661,pool2,JM-Metabolic__GN02529 +1,JM-Metabolic__GN02531,JM-Metabolic.GN02531,Feist_11661_P42_diluted,B17,iTru7_304_11,GTGTCTGA,iTru5_105_F,GGCAAGTT,Feist_11661,pool1,JM-Metabolic__GN02531 +1,JM-Metabolic__GN02567,JM-Metabolic.GN02567,Feist_11661_P42,D17,iTru7_304_12,GAATCGTG,iTru5_106_F,GTCTGAGT,Feist_11661,pool2,JM-Metabolic__GN02567 +1,JM-Metabolic__GN02590,JM-Metabolic.GN02590,Feist_11661_P42_diluted,F17,iTru7_305_01,GCGATAGT,iTru5_107_F,TCTACGCA,Feist_11661,pool1,JM-Metabolic__GN02590 +1,JM-Metabolic__GN02657,JM-Metabolic.GN02657,Feist_11661_P42_diluted,H17,iTru7_305_02,GGCTATTG,iTru5_108_F,GAGGCATT,Feist_11661,pool2,JM-Metabolic__GN02657 +1,JM-Metabolic__GN02748,JM-Metabolic.GN02748,Feist_11661_P42,J17,iTru7_305_03,AGTTACGG,iTru5_109_F,GCTAAGGA,Feist_11661,pool1,JM-Metabolic__GN02748 +1,JM-Metabolic__GN02766,JM-Metabolic.GN02766,Feist_11661_P42_diluted,L17,iTru7_305_04,CGTACGAA,iTru5_110_F,GCCAGAAT,Feist_11661,pool2,JM-Metabolic__GN02766 +1,JM-Metabolic__GN02769,JM-Metabolic.GN02769,Feist_11661_P42_diluted,N17,iTru7_305_05,ACCACGAT,iTru5_111_F,TAAGTGGC,Feist_11661,pool1,JM-Metabolic__GN02769 +1,JM-Metabolic__GN02787,JM-Metabolic.GN02787,Feist_11661_P42_diluted,P17,iTru7_305_06,GATTACCG,iTru5_112_F,GCAATGAG,Feist_11661,pool2,JM-Metabolic__GN02787 +1,JM-Metabolic__GN03132,JM-Metabolic.GN03132,Feist_11661_P42,B19,iTru7_305_07,GAGATACG,iTru5_101_G,AACTGAGG,Feist_11661,pool1,JM-Metabolic__GN03132 +1,JM-Metabolic__GN03218,JM-Metabolic.GN03218,Feist_11661_P42_diluted,D19,iTru7_305_08,CGACGTTA,iTru5_102_G,AAGGAAGG,Feist_11661,pool2,JM-Metabolic__GN03218 +1,JM-Metabolic__GN03252,JM-Metabolic.GN03252,Feist_11661_P42_diluted,F19,iTru7_305_09,GAGATGTC,iTru5_103_G,AATGGTCG,Feist_11661,pool1,JM-Metabolic__GN03252 +1,JM-Metabolic__GN03409,JM-Metabolic.GN03409,Feist_11661_P42_diluted,H19,iTru7_305_10,GATTGGAG,iTru5_104_G,ACAGCAAG,Feist_11661,pool2,JM-Metabolic__GN03409 +1,JM-Metabolic__GN04014,JM-Metabolic.GN04014,Feist_11661_P42_diluted,J19,iTru7_305_11,GCAATTCG,iTru5_105_G,ACGTATGG,Feist_11661,pool1,JM-Metabolic__GN04014 +1,JM-Metabolic__GN04094,JM-Metabolic.GN04094,Feist_11661_P42_diluted,L19,iTru7_305_12,CGTCAATG,iTru5_106_G,ACTGCACT,Feist_11661,pool2,JM-Metabolic__GN04094 +1,JM-Metabolic__GN04255,JM-Metabolic.GN04255,Feist_11661_P42_diluted,N19,iTru7_401_01,ATGCACGA,iTru5_107_G,AGAGTCCA,Feist_11661,pool1,JM-Metabolic__GN04255 +1,JM-Metabolic__GN04306,JM-Metabolic.GN04306,Feist_11661_P42_diluted,P19,iTru7_401_02,ATCGCCAT,iTru5_108_G,AGCCTATC,Feist_11661,pool2,JM-Metabolic__GN04306 +1,JM-Metabolic__GN04428,JM-Metabolic.GN04428,Feist_11661_P42_diluted,B21,iTru7_401_03,TCTCGCAA,iTru5_109_G,AGGAACAC,Feist_11661,pool1,JM-Metabolic__GN04428 +1,JM-Metabolic__GN04488,JM-Metabolic.GN04488,Feist_11661_P42_diluted,D21,iTru7_401_04,ACGACAGA,iTru5_110_G,AGGTCTGT,Feist_11661,pool2,JM-Metabolic__GN04488 +1,JM-Metabolic__GN04540,JM-Metabolic.GN04540,Feist_11661_P42_diluted,F21,iTru7_401_05,TTACGGCT,iTru5_111_G,AGTATGCC,Feist_11661,pool1,JM-Metabolic__GN04540 +1,JM-Metabolic__GN04563,JM-Metabolic.GN04563,Feist_11661_P42_diluted,H21,iTru7_401_06,GAGGACTT,iTru5_112_G,AGTTCGCA,Feist_11661,pool2,JM-Metabolic__GN04563 +1,JM-Metabolic__GN04612,JM-Metabolic.GN04612,Feist_11661_P42_diluted,J21,iTru7_401_07,GGCATACT,iTru5_101_H,TGGAAGCA,Feist_11661,pool1,JM-Metabolic__GN04612 +1,JM-Metabolic__GN04665,JM-Metabolic.GN04665,Feist_11661_P42_diluted,L21,iTru7_401_08,CGTAGGTT,iTru5_102_H,GTCAGTCA,Feist_11661,pool2,JM-Metabolic__GN04665 +1,JM-Metabolic__GN04682,JM-Metabolic.GN04682,Feist_11661_P42_diluted,N21,iTru7_401_09,ATATGCGC,iTru5_103_H,GTAACCGA,Feist_11661,pool1,JM-Metabolic__GN04682 +1,JM-Metabolic__GN05002,JM-Metabolic.GN05002,Feist_11661_P42_diluted,P21,iTru7_401_10,GGATGTAG,iTru5_104_H,GTTATGGC,Feist_11661,pool2,JM-Metabolic__GN05002 +1,JM-Metabolic__GN05109,JM-Metabolic.GN05109,Feist_11661_P42_diluted,B23,iTru7_401_11,CCTGTCAT,iTru5_105_H,GTAAGCAC,Feist_11661,pool1,JM-Metabolic__GN05109 +1,JM-Metabolic__GN05128,JM-Metabolic.GN05128,Feist_11661_P42_diluted,D23,iTru7_401_12,TGCTCATG,iTru5_106_H,GGAATGTC,Feist_11661,pool2,JM-Metabolic__GN05128 +1,JM-Metabolic__GN05367,JM-Metabolic.GN05367,Feist_11661_P42_diluted,F23,iTru7_402_01,TGAAGACG,iTru5_107_H,GAGAAGGT,Feist_11661,pool1,JM-Metabolic__GN05367 +1,JM-Metabolic__GN05377,JM-Metabolic.GN05377,Feist_11661_P42_diluted,H23,iTru7_402_02,GTTACGCA,iTru5_108_H,GAGTAGAG,Feist_11661,pool2,JM-Metabolic__GN05377 +1,7A,7A,Gerwick_tubes,J23,iTru7_402_03,ACTCAGAC,iTru5_109_H,GCATTGGT,Gerwick_6123,pool1,7A +1,8A,8A,Gerwick_tubes,L23,iTru7_402_04,GTCCACAT,iTru5_110_H,TCCAGCAA,Gerwick_6123,pool2,8A +1,BLANK_42_12G,BLANK.42.12G,Feist_11661_P42,N23,iTru7_402_05,CGCTAGTA,iTru5_111_H,GAATCCGT,Feist_11661,pool1,BLANK.42.12G +1,BLANK_42_12H,BLANK.42.12H,Feist_11661_P42,P23,iTru7_402_06,GAATCCGA,iTru5_112_H,TACATCGG,Feist_11661,pool2,BLANK.42.12H +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0326,Feist_11661_P43,B2,iTru7_402_07,GAGACGAT,iTru5_113_A,ATAACGCC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0326 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0327,Feist_11661_P43,D2,iTru7_402_08,TAAGTGGC,iTru5_114_A,ATGACAGG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0327 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0328,Feist_11661_P43,F2,iTru7_402_09,ACTGAGGT,iTru5_115_A,CAACACAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0328 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0329,Feist_11661_P43,H2,iTru7_402_10,TGTACCGT,iTru5_116_A,CACCAGTT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0329 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0330,Feist_11661_P43,J2,iTru7_402_11,AGCAAGCA,iTru5_117_A,CAGAGTGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0330 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0352,Feist_11661_P43,L2,iTru7_402_12,TCTCGTGT,iTru5_118_A,CCGATGTA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0352 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0353,Feist_11661_P43,N2,iTru7_115_01,CAAGGTCT,iTru5_119_A,CCTTCCAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0353 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0354,Feist_11661_P43,P2,iTru7_115_02,TAGACGTG,iTru5_120_A,CGGTAATC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0354 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0355,Feist_11661_P43,B4,iTru7_115_03,TGAGCTAG,iTru5_121_A,CTAGGTTG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0355 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0356,Feist_11661_P43,D4,iTru7_115_04,CTGACACA,iTru5_122_A,CTCGGTAA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0356 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0357,Feist_11661_P43,F4,iTru7_115_05,ACGGTCTT,iTru5_123_A,CTGTGGTA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0357 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0364,Feist_11661_P43,H4,iTru7_115_06,GCTGTTGT,iTru5_124_A,GTACGATC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0364 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0366,Feist_11661_P43,J4,iTru7_115_07,CACTAGCT,iTru5_113_B,TCTGTCGT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0366 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0367,Feist_11661_P43,L4,iTru7_115_08,TGGTACAG,iTru5_114_B,GAATGGCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0367 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0368,Feist_11661_P43,N4,iTru7_115_09,AGCACTTC,iTru5_115_B,GTGTGTTC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0368 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0369,Feist_11661_P43,P4,iTru7_115_10,GCATACAG,iTru5_116_B,GGTTGAAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0369 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0370,Feist_11661_P43,B6,iTru7_115_11,CTTAGGAC,iTru5_117_B,GGCTCAAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0370 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0371,Feist_11661_P43,D6,iTru7_211_01,GCTTCTTG,iTru5_118_B,TTCGCCAT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0371 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0372,Feist_11661_P43,F6,iTru7_101_01,ACGTTACC,iTru5_119_B,GTCCTTGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0372 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0373,Feist_11661_P43,H6,iTru7_101_02,CTGTGTTG,iTru5_120_B,TAACGTCG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0373 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0374,Feist_11661_P43,J6,iTru7_101_03,TGAGGTGT,iTru5_121_B,GAGACCAA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0374 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0375,Feist_11661_P43,L6,iTru7_101_04,GATCCATG,iTru5_122_B,GATCAAGG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0375 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0376,Feist_11661_P43,N6,iTru7_101_05,GCCTATCA,iTru5_123_B,GCAACCAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0376 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0377,Feist_11661_P43,P6,iTru7_101_06,AACAACCG,iTru5_124_B,AAGGAGAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0377 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0378,Feist_11661_P43,B8,iTru7_101_07,ACTCGTTG,iTru5_113_C,ATCGGAGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0378 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0380,Feist_11661_P43,D8,iTru7_101_08,CCTATGGT,iTru5_114_C,ATGCGCTT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0380 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0381,Feist_11661_P43,F8,iTru7_101_09,TGTACACC,iTru5_115_C,CAACCGTA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0381 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0382,Feist_11661_P43,H8,iTru7_101_10,GTATGCTG,iTru5_116_C,CACTTCAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0382 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0383,Feist_11661_P43,J8,iTru7_101_11,TGATGTCC,iTru5_117_C,CAGCTAGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0383 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0384,Feist_11661_P43,L8,iTru7_101_12,GTCCTTCT,iTru5_118_C,CCGTTATG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0384 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0385,Feist_11661_P43,N8,iTru7_102_01,ATAAGGCG,iTru5_119_C,CGAACAAC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0385 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0386,Feist_11661_P43,P8,iTru7_102_02,CTTACCTG,iTru5_120_C,CGTAGATG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0386 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0387,Feist_11661_P43,B10,iTru7_102_03,CGTTGCAA,iTru5_121_C,CTATGCCT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0387 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0388,Feist_11661_P43,D10,iTru7_102_04,GATTCAGC,iTru5_122_C,CTGATGAG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0388 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0389,Feist_11661_P43,F10,iTru7_102_05,TCACGTTC,iTru5_123_C,CTTCCTTC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0389 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0390,Feist_11661_P43,H10,iTru7_102_06,TGTGCGTT,iTru5_124_C,GTCTCATC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0390 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0391,Feist_11661_P43,J10,iTru7_102_07,TAGTTGCG,iTru5_113_D,GCGCATAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0391 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0392,Feist_11661_P43,L10,iTru7_102_08,AAGAGCCA,iTru5_114_D,GAAGATCC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0392 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0393,Feist_11661_P43,N10,iTru7_102_09,ACAGCTCA,iTru5_115_D,GTTGGCAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0393 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0394,Feist_11661_P43,P10,iTru7_102_10,GTTAAGGC,iTru5_116_D,GTGAATGG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0394 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0395,Feist_11661_P43,B12,iTru7_102_11,AAGCCACA,iTru5_117_D,GTATCGAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0395 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0396,Feist_11661_P43,D12,iTru7_102_12,ACACGGTT,iTru5_118_D,TGCAAGAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0396 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0397,Feist_11661_P43,F12,iTru7_103_01,CAGCGATT,iTru5_119_D,GAGTGTGT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0397 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0398,Feist_11661_P43,H12,iTru7_103_02,TAGTGACC,iTru5_120_D,TAAGCGCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0398 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0399,Feist_11661_P43,J12,iTru7_103_03,CGAGACTA,iTru5_121_D,TAGCAGGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0399 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0400,Feist_11661_P43,L12,iTru7_103_04,GACATGGT,iTru5_122_D,GACTACGA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0400 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0401,Feist_11661_P43,N12,iTru7_103_05,GCATGTCT,iTru5_123_D,GACGTCAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0401 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0402,Feist_11661_P43,P12,iTru7_103_06,ACTCCATC,iTru5_124_D,AAGAGGCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0402 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0403,Feist_11661_P43,B14,iTru7_103_07,TGTGACTG,iTru5_113_E,ATCGTCTC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0403 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0404,Feist_11661_P43,D14,iTru7_103_08,CGAAGAAC,iTru5_114_E,ATGGCGAT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0404 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0405,Feist_11661_P43,F14,iTru7_103_09,GGTGTCTT,iTru5_115_E,CAAGAAGC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0405 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0406,Feist_11661_P43,H14,iTru7_103_10,AAGAAGGC,iTru5_116_E,CAGAACTG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0406 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0407,Feist_11661_P43,J14,iTru7_103_11,AGGTTCGA,iTru5_117_E,CAGGTAAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0407 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0408,Feist_11661_P43,L14,iTru7_103_12,CATGTTCC,iTru5_118_E,CCTACCTA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0408 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0409,Feist_11661_P43,N14,iTru7_104_01,GTGCCATA,iTru5_119_E,CGAAGTCA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0409 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0417,Feist_11661_P43,P14,iTru7_104_02,CCTTGTAG,iTru5_120_E,CGTCTTCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0417 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0418,Feist_11661_P43,B16,iTru7_104_03,GCTGGATT,iTru5_121_E,CTCAAGCT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0418 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0419,Feist_11661_P43,D16,iTru7_104_04,TAACGAGG,iTru5_122_E,CTGCCATA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0419 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0420,Feist_11661_P43,F16,iTru7_104_05,ATGGTTGC,iTru5_123_E,CTTGCTAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0420 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0421,Feist_11661_P43,H16,iTru7_104_06,CCTATACC,iTru5_124_E,GTCTGCAA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0421 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0473,Feist_11661_P43,J16,iTru7_104_07,TTAGGTCG,iTru5_113_F,GCTACTCT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0473 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0474,Feist_11661_P43,L16,iTru7_104_08,GCAAGATC,iTru5_114_F,TACAGAGC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0474 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0483,Feist_11661_P43,N16,iTru7_104_09,AGAGCCTT,iTru5_115_F,GGTCGTAT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0483 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0484,Feist_11661_P43,P16,iTru7_104_10,GCAATGGA,iTru5_116_F,GTCGTTAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0484 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0485,Feist_11661_P43,B18,iTru7_104_11,CTGGAGTA,iTru5_117_F,TTCACGGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0485 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0486,Feist_11661_P43,D18,iTru7_104_12,GAACATCG,iTru5_118_F,TGCTTGCT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0486 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0516,Feist_11661_P43,F18,iTru7_105_01,GCACAACT,iTru5_119_F,TCTTACGG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0516 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0517,Feist_11661_P43,H18,iTru7_105_02,TTCTCTCG,iTru5_120_F,TCCTCATG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0517 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0518,Feist_11661_P43,J18,iTru7_105_03,AACGGTCA,iTru5_121_F,GATGTCGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0518 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0519,Feist_11661_P43,L18,iTru7_105_04,ACAGACCT,iTru5_122_F,GAAGTGCT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0519 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0520,Feist_11661_P43,N18,iTru7_105_05,TCTCTTCC,iTru5_123_F,TCACTCGA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0520 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0521,Feist_11661_P43,P18,iTru7_105_06,AGTGTTGG,iTru5_124_F,ACGCAGTA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0521 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0522,Feist_11661_P43,B20,iTru7_105_07,TGGCATGT,iTru5_113_G,ATCTCCTG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0522 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0523,Feist_11661_P43,D20,iTru7_105_08,AGAAGCGT,iTru5_114_G,ATGTGGAC,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0523 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0524,Feist_11661_P43,F20,iTru7_105_09,AGCGGAAT,iTru5_115_G,CAAGCCAA,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-B0524 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525,JM-MEC.Staphylococcus.aureusstrain.BERTI-B0525,Feist_11661_P43,H20,iTru7_105_10,TAACCGGT,iTru5_116_G,CAGACGTT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-B0525 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624,JM-MEC.Staphylococcus.aureusstrain.BERTI-R08624,Feist_11661_P43,J20,iTru7_105_11,CATGGAAC,iTru5_117_G,CATACTCG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R08624 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704,JM-MEC.Staphylococcus.aureusstrain.BERTI-R08704,Feist_11661_P43,L20,iTru7_105_12,ATGGTCCA,iTru5_118_G,CCTGTCAA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R08704 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727,JM-MEC.Staphylococcus.aureusstrain.BERTI-R10727,Feist_11661_P43,N20,iTru7_106_01,CTTCTGAG,iTru5_119_G,CGAGTTAG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R10727 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11044,Feist_11661_P43,P20,iTru7_106_02,AACCGAAG,iTru5_120_G,CTAACCTG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R11044 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11078,Feist_11661_P43,B22,iTru7_106_03,TTCGTACC,iTru5_121_G,CTCCTAGT,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R11078 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11101,Feist_11661_P43,D22,iTru7_106_04,CTGTTAGG,iTru5_122_G,CTGTACCA,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R11101 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11102,Feist_11661_P43,F22,iTru7_106_05,CACAAGTC,iTru5_123_G,GCTACAAC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R11102 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11103,Feist_11661_P43,H22,iTru7_106_06,TCTTGACG,iTru5_124_G,GTTCTTCG,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R11103 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11135,Feist_11661_P43,J22,iTru7_106_07,CGTCTTGT,iTru5_113_H,GAGAGTAC,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R11135 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11153,Feist_11661_P43,L22,iTru7_106_08,CGTGATCA,iTru5_114_H,GACACAGT,Feist_11661,pool2,JM-MEC__Staphylococcus aureusstrain BERTI-R11153 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154,JM-MEC.Staphylococcus.aureusstrain.BERTI-R11154,Feist_11661_P43,N22,iTru7_106_09,CCAAGTTG,iTru5_115_H,TTGCTTGG,Feist_11661,pool1,JM-MEC__Staphylococcus aureusstrain BERTI-R11154 +1,JM-Metabolic__GN02424,JM-Metabolic.GN02424,Feist_11661_P43,P22,iTru7_106_10,GTACCTTG,iTru5_116_H,GTAGTACC,Feist_11661,pool2,JM-Metabolic__GN02424 +1,JM-Metabolic__GN02446,JM-Metabolic.GN02446,Feist_11661_P43,B24,iTru7_106_11,GACTATGC,iTru5_117_H,TTCGGCTA,Feist_11661,pool1,JM-Metabolic__GN02446 +1,JM-Metabolic__GN02449,JM-Metabolic.GN02449,Feist_11661_P43,D24,iTru7_106_12,TGGATCAC,iTru5_118_H,TGCACTTG,Feist_11661,pool2,JM-Metabolic__GN02449 +1,JM-Metabolic__GN02487,JM-Metabolic.GN02487,Feist_11661_P43_diluted,F24,iTru7_107_01,CTCTGGTT,iTru5_119_H,TAGAACGC,Feist_11661,pool1,JM-Metabolic__GN02487 +1,JM-Metabolic__GN02501,JM-Metabolic.GN02501,Feist_11661_P43,H24,iTru7_107_02,GTTCATGG,iTru5_120_H,GATTGTCC,Feist_11661,pool2,JM-Metabolic__GN02501 +1,ISB,ISB,Gerwick_tubes,J24,iTru7_107_03,GCTGTAAG,iTru5_121_H,GATGCTAC,Gerwick_6123,pool1,ISB +1,GFR,GFR,Gerwick_tubes,L24,iTru7_107_04,GTCGAAGA,iTru5_122_H,GAACGGTT,Gerwick_6123,pool2,GFR +1,BLANK_43_12G,BLANK.43.12G,Feist_11661_P43,N24,iTru7_107_05,GAGCTCAA,iTru5_123_H,CTCTTGTC,Feist_11661,pool1,BLANK.43.12G +1,BLANK_43_12H,BLANK.43.12H,Feist_11661_P43,P24,iTru7_107_06,TGAACCTG,iTru5_124_H,AACGCCTT,Feist_11661,pool2,BLANK.43.12H +1,RMA_KHP_rpoS_Mage_Q97D,RMA.KHP.rpoS.Mage.Q97D,,,12,CTTGTAAT,U1,TATAGCGT,Feist_11661,pool1,RMA_KHP_rpoS Mage Q97D +1,RMA_KHP_rpoS_Mage_Q97L,RMA.KHP.rpoS.Mage.Q97L,,,13,AGTCAAAT,U1,TATAGCGT,Feist_11661,pool2,RMA_KHP_rpoS Mage Q97L +1,RMA_KHP_rpoS_Mage_Q97N,RMA.KHP.rpoS.Mage.Q97N,,,14,AGTTCCAT,U1,TATAGCGT,Feist_11661,pool1,RMA_KHP_rpoS Mage Q97N +1,RMA_KHP_rpoS_Mage_Q97E,RMA.KHP.rpoS.Mage.Q97E,,,15,ATGTCAAT,U1,TATAGCGT,Feist_11661,pool2,RMA_KHP_rpoS Mage Q97E +1,JBI_KHP_HGL_021,JBI.KHP.HGL.021,,,1,ATCACGAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_021 +1,JBI_KHP_HGL_022,JBI.KHP.HGL.022,,,2,CGATGTAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_022 +1,JBI_KHP_HGL_023,JBI.KHP.HGL.023,,,3,TTAGGCAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_023 +1,JBI_KHP_HGL_024,JBI.KHP.HGL.024,,,4,TGACCAAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_024 +1,JBI_KHP_HGL_025,JBI.KHP.HGL.025,,,5,ACAGTGAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_025 +1,JBI_KHP_HGL_026,JBI.KHP.HGL.026,,,6,GCCAATAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_026 +1,JBI_KHP_HGL_027,JBI.KHP.HGL.027,,,7,CAGATCAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_027 +1,JBI_KHP_HGL_028_Amitesh_soxR,JBI.KHP.HGL.028.Amitesh.soxR,,,8,ACTTGAAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_028_Amitesh_soxR +1,JBI_KHP_HGL_029_Amitesh_oxyR,JBI.KHP.HGL.029.Amitesh.oxyR,,,9,GATCAGAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_029_Amitesh_oxyR +1,JBI_KHP_HGL_030_Amitesh_soxR_oxyR,JBI.KHP.HGL.030.Amitesh.soxR.oxyR,,,10,TAGCTTAT,U2,ATAGAGGT,Feist_11661,pool2,JBI_KHP_HGL_030_Amitesh_soxR_oxyR +1,JBI_KHP_HGL_031_Amitesh_rpoS,JBI.KHP.HGL.031.Amitesh.rpoS,,,11,GGCTACAT,U2,ATAGAGGT,Feist_11661,pool1,JBI_KHP_HGL_031_Amitesh_rpoS +1,BLANK1_1A,BLANK1.1A,NYU_BMS_Melanoma_13059_P1,A1,iTru7_107_09,GCCTTGTT,iTru5_01_A,ACCGACAA,NYU_BMS_Melanoma_13059,pool2,BLANK1.1A +1,BLANK1_1B,BLANK1.1B,NYU_BMS_Melanoma_13059_P1,C1,iTru7_107_10,AACTTGCC,iTru5_02_A,CTTCGCAA,NYU_BMS_Melanoma_13059,pool1,BLANK1.1B +1,BLANK1_1C,BLANK1.1C,NYU_BMS_Melanoma_13059_P1,E1,iTru7_107_11,CAATGTGG,iTru5_03_A,AACACCAC,NYU_BMS_Melanoma_13059,pool2,BLANK1.1C +1,BLANK1_1D,BLANK1.1D,NYU_BMS_Melanoma_13059_P1,G1,iTru7_107_12,AAGGCTGA,iTru5_04_A,CGTATCTC,NYU_BMS_Melanoma_13059,pool1,BLANK1.1D +1,BLANK1_1E,BLANK1.1E,NYU_BMS_Melanoma_13059_P1,I1,iTru7_108_01,TTACCGAG,iTru5_05_A,GGTACGAA,NYU_BMS_Melanoma_13059,pool2,BLANK1.1E +1,BLANK1_1F,BLANK1.1F,NYU_BMS_Melanoma_13059_P1,K1,iTru7_108_02,GTCCTAAG,iTru5_06_A,CGATCGAT,NYU_BMS_Melanoma_13059,pool1,BLANK1.1F +1,BLANK1_1G,BLANK1.1G,NYU_BMS_Melanoma_13059_P1,M1,iTru7_108_03,GAAGGTTC,iTru5_07_A,AAGACACC,NYU_BMS_Melanoma_13059,pool2,BLANK1.1G +1,BLANK1_1H,BLANK1.1H,NYU_BMS_Melanoma_13059_P1,O1,iTru7_108_04,GAAGAGGT,iTru5_08_A,CATCTGCT,NYU_BMS_Melanoma_13059,pool1,BLANK1.1H +1,AP581451B02,AP581451B02,NYU_BMS_Melanoma_13059_P1,A3,iTru7_108_05,TCTGAGAG,iTru5_09_A,CTCTCAGA,NYU_BMS_Melanoma_13059,pool2,AP581451B02 +1,EP256645B01,EP256645B01,NYU_BMS_Melanoma_13059_P1,C3,iTru7_108_06,ACCGCATA,iTru5_10_A,TCGTCTGA,NYU_BMS_Melanoma_13059,pool1,EP256645B01 +1,EP112567B02,EP112567B02,NYU_BMS_Melanoma_13059_P1,E3,iTru7_108_07,GAAGTACC,iTru5_11_A,CAATAGCC,NYU_BMS_Melanoma_13059,pool2,EP112567B02 +1,EP337425B01,EP337425B01,NYU_BMS_Melanoma_13059_P1,G3,iTru7_108_08,CAGGTATC,iTru5_12_A,CATTCGTC,NYU_BMS_Melanoma_13059,pool1,EP337425B01 +1,LP127890A01,LP127890A01,NYU_BMS_Melanoma_13059_P1,I3,iTru7_108_09,TCTCTAGG,iTru5_01_B,AGTGGCAA,NYU_BMS_Melanoma_13059,pool2,LP127890A01 +1,EP159692B04,EP159692B04,NYU_BMS_Melanoma_13059_P1,K3,iTru7_108_10,AAGCACTG,iTru5_02_B,GTGGTATG,NYU_BMS_Melanoma_13059,pool1,EP159692B04 +1,EP987683A01,EP987683A01,NYU_BMS_Melanoma_13059_P1,M3,iTru7_108_11,CCAAGCAA,iTru5_03_B,TGAGCTGT,NYU_BMS_Melanoma_13059,pool2,EP987683A01 +1,AP959450A03,AP959450A03,NYU_BMS_Melanoma_13059_P1,O3,iTru7_108_12,TGTTCGAG,iTru5_04_B,CGTCAAGA,NYU_BMS_Melanoma_13059,pool1,AP959450A03 +1,SP464350A04,SP464350A04,NYU_BMS_Melanoma_13059_P1,A5,iTru7_109_01,CTCGTCTT,iTru5_05_B,AAGCATCG,NYU_BMS_Melanoma_13059,pool2,SP464350A04 +1,C9,C9,NYU_BMS_Melanoma_13059_P1,C5,iTru7_109_02,CGAACTGT,iTru5_06_B,TACTCCAG,NYU_BMS_Melanoma_13059,pool1,C9 +1,ep256643b01,ep256643b01,NYU_BMS_Melanoma_13059_P1,E5,iTru7_109_03,CATTCGGT,iTru5_07_B,GATACCTG,NYU_BMS_Melanoma_13059,pool2,ep256643b01 +1,EP121011B01,EP121011B01,NYU_BMS_Melanoma_13059_P1,G5,iTru7_109_04,TCGGTTAC,iTru5_08_B,ACCTCTTC,NYU_BMS_Melanoma_13059,pool1,EP121011B01 +1,AP616837B04,AP616837B04,NYU_BMS_Melanoma_13059_P1,I5,iTru7_109_05,AAGTCGAG,iTru5_09_B,ACGGACTT,NYU_BMS_Melanoma_13059,pool2,AP616837B04 +1,SP506933A04,SP506933A04,NYU_BMS_Melanoma_13059_P1,K5,iTru7_109_06,TATCGGTC,iTru5_10_B,CATGTGTG,NYU_BMS_Melanoma_13059,pool1,SP506933A04 +1,EP159695B01,EP159695B01,NYU_BMS_Melanoma_13059_P1,M5,iTru7_109_07,TATTCGCC,iTru5_11_B,TGCCTCAA,NYU_BMS_Melanoma_13059,pool2,EP159695B01 +1,EP256644B01,EP256644B01,NYU_BMS_Melanoma_13059_P1,O5,iTru7_109_08,GTATTGGC,iTru5_12_B,ATCTGACC,NYU_BMS_Melanoma_13059,pool1,EP256644B01 +1,SP511289A02,SP511289A02,NYU_BMS_Melanoma_13059_P1,A7,iTru7_109_09,AGTCGCTT,iTru5_01_C,CACAGACT,NYU_BMS_Melanoma_13059,pool2,SP511289A02 +1,EP305735B04,EP305735B04,NYU_BMS_Melanoma_13059_P1,C7,iTru7_109_10,TGGCACTA,iTru5_02_C,CACTGTAG,NYU_BMS_Melanoma_13059,pool1,EP305735B04 +1,SP415030A01,SP415030A01,NYU_BMS_Melanoma_13059_P1,E7,iTru7_109_11,GGTTGTCA,iTru5_03_C,CACAGGAA,NYU_BMS_Melanoma_13059,pool2,SP415030A01 +1,AP549681B02,AP549681B02,NYU_BMS_Melanoma_13059_P1,G7,iTru7_109_12,AACCTCCT,iTru5_04_C,CCATGAAC,NYU_BMS_Melanoma_13059,pool1,AP549681B02 +1,AP549678B01,AP549678B01,NYU_BMS_Melanoma_13059_P1,I7,iTru7_110_01,ATGACCAG,iTru5_05_C,GCCAATAC,NYU_BMS_Melanoma_13059,pool2,AP549678B01 +1,EP260544B04,EP260544B04,NYU_BMS_Melanoma_13059_P1,K7,iTru7_110_02,AACCGTTC,iTru5_06_C,AGCTACCA,NYU_BMS_Melanoma_13059,pool1,EP260544B04 +1,EP202452B01,EP202452B01,NYU_BMS_Melanoma_13059_P1,M7,iTru7_110_03,TCCAATCG,iTru5_07_C,AACCGAAC,NYU_BMS_Melanoma_13059,pool2,EP202452B01 +1,EP282276B04,EP282276B04,NYU_BMS_Melanoma_13059_P1,O7,iTru7_110_04,CTGCACTT,iTru5_08_C,ATCGCAAC,NYU_BMS_Melanoma_13059,pool1,EP282276B04 +1,SP531696A04,SP531696A04,NYU_BMS_Melanoma_13059_P1,A9,iTru7_110_05,CGCTTAAC,iTru5_09_C,GTTGCTGT,NYU_BMS_Melanoma_13059,pool2,SP531696A04 +1,SP515443A04,SP515443A04,NYU_BMS_Melanoma_13059_P1,C9,iTru7_110_06,CACCACTA,iTru5_10_C,TCTAGTCC,NYU_BMS_Melanoma_13059,pool1,SP515443A04 +1,SP515763A04,SP515763A04,NYU_BMS_Melanoma_13059_P1,E9,iTru7_110_07,ACAGCAAC,iTru5_11_C,GACGAACT,NYU_BMS_Melanoma_13059,pool2,SP515763A04 +1,EP184255B04,EP184255B04,NYU_BMS_Melanoma_13059_P1,G9,iTru7_110_08,GGAAGGAT,iTru5_12_C,TTCGTACG,NYU_BMS_Melanoma_13059,pool1,EP184255B04 +1,SP503615A02,SP503615A02,NYU_BMS_Melanoma_13059_P1,I9,iTru7_110_09,GGCGTTAT,iTru5_01_D,CGACACTT,NYU_BMS_Melanoma_13059,pool2,SP503615A02 +1,EP260543B04,EP260543B04,NYU_BMS_Melanoma_13059_P1,K9,iTru7_110_10,CTGTTGAC,iTru5_02_D,AGACGCTA,NYU_BMS_Melanoma_13059,pool1,EP260543B04 +1,EP768748A04,EP768748A04,NYU_BMS_Melanoma_13059_P1,M9,iTru7_110_11,GTCATCGA,iTru5_03_D,TGACAACC,NYU_BMS_Melanoma_13059,pool2,EP768748A04 +1,AP309872B03,AP309872B03,NYU_BMS_Melanoma_13059_P1,O9,iTru7_110_12,TGACTTCG,iTru5_04_D,GGTACTTC,NYU_BMS_Melanoma_13059,pool1,AP309872B03 +1,AP568785B04,AP568785B04,NYU_BMS_Melanoma_13059_P1,A11,iTru7_111_01,CGATAGAG,iTru5_05_D,CTGTATGC,NYU_BMS_Melanoma_13059,pool2,AP568785B04 +1,EP721390A04,EP721390A04,NYU_BMS_Melanoma_13059_P1,C11,iTru7_111_02,TTCGTTGG,iTru5_06_D,TCGACAAG,NYU_BMS_Melanoma_13059,pool1,EP721390A04 +1,EP940013A01,EP940013A01,NYU_BMS_Melanoma_13059_P1,E11,iTru7_111_03,TGGAGAGT,iTru5_07_D,GCTGAATC,NYU_BMS_Melanoma_13059,pool2,EP940013A01 +1,EP291979B04,EP291979B04,NYU_BMS_Melanoma_13059_P1,G11,iTru7_111_04,TCAGACGA,iTru5_08_D,AGTTGTGC,NYU_BMS_Melanoma_13059,pool1,EP291979B04 +1,EP182065B04,EP182065B04,NYU_BMS_Melanoma_13059_P1,I11,iTru7_111_05,GACGAATG,iTru5_09_D,TGTCGACT,NYU_BMS_Melanoma_13059,pool2,EP182065B04 +1,EP128904B02,EP128904B02,NYU_BMS_Melanoma_13059_P1,K11,iTru7_111_06,CATGAGGA,iTru5_10_D,AAGGCTCT,NYU_BMS_Melanoma_13059,pool1,EP128904B02 +1,EP915769A04,EP915769A04,NYU_BMS_Melanoma_13059_P1,M11,iTru7_111_07,CGGTTGTT,iTru5_11_D,CCTAACAG,NYU_BMS_Melanoma_13059,pool2,EP915769A04 +1,SP464352A03,SP464352A03,NYU_BMS_Melanoma_13059_P1,O11,iTru7_111_08,TCCGTATG,iTru5_12_D,AAGACGAG,NYU_BMS_Melanoma_13059,pool1,SP464352A03 +1,SP365864A04,SP365864A04,NYU_BMS_Melanoma_13059_P1,A13,iTru7_111_09,TGTGGTAC,iTru5_01_E,GACTTGTG,NYU_BMS_Melanoma_13059,pool2,SP365864A04 +1,SP511294A04,SP511294A04,NYU_BMS_Melanoma_13059_P1,C13,iTru7_111_10,AGAACGAG,iTru5_02_E,CAACTCCA,NYU_BMS_Melanoma_13059,pool1,SP511294A04 +1,EP061002B01,EP061002B01,NYU_BMS_Melanoma_13059_P1,E13,iTru7_111_11,CTTCGTTC,iTru5_03_E,TGTTCCGT,NYU_BMS_Melanoma_13059,pool2,EP061002B01 +1,SP410793A01,SP410793A01,NYU_BMS_Melanoma_13059_P1,G13,iTru7_111_12,CCAATAGG,iTru5_04_E,ACCGCTAT,NYU_BMS_Melanoma_13059,pool1,SP410793A01 +1,SP232077A04,SP232077A04,NYU_BMS_Melanoma_13059_P1,I13,iTru7_112_01,ACCATCCA,iTru5_05_E,CTTAGGAC,NYU_BMS_Melanoma_13059,pool2,SP232077A04 +1,EP128910B01,EP128910B01,NYU_BMS_Melanoma_13059_P1,K13,iTru7_112_02,CACACATG,iTru5_06_E,TATGACCG,NYU_BMS_Melanoma_13059,pool1,EP128910B01 +1,AP531397B04,AP531397B04,NYU_BMS_Melanoma_13059_P1,M13,iTru7_112_03,CTTGTCGA,iTru5_07_E,AGCTAGTG,NYU_BMS_Melanoma_13059,pool2,AP531397B04 +1,EP043583B01,EP043583B01,NYU_BMS_Melanoma_13059_P1,O13,iTru7_112_04,AGTCTCAC,iTru5_08_E,GAACGAAG,NYU_BMS_Melanoma_13059,pool1,EP043583B01 +1,EP230245B01,EP230245B01,NYU_BMS_Melanoma_13059_P1,A15,iTru7_112_05,AGTTGGCT,iTru5_09_E,CGTCTAAC,NYU_BMS_Melanoma_13059,pool2,EP230245B01 +1,EP606652B04,EP606652B04,NYU_BMS_Melanoma_13059_P1,C15,iTru7_112_06,CCGGAATT,iTru5_10_E,AACCAGAG,NYU_BMS_Melanoma_13059,pool1,EP606652B04 +1,EP207041B01,EP207041B01,NYU_BMS_Melanoma_13059_P1,E15,iTru7_112_07,CAGTGAAG,iTru5_11_E,CGCCTTAT,NYU_BMS_Melanoma_13059,pool2,EP207041B01 +1,EP727972A04,EP727972A04,NYU_BMS_Melanoma_13059_P1,G15,iTru7_112_08,CCTACTGA,iTru5_12_E,CTCGTTCT,NYU_BMS_Melanoma_13059,pool1,EP727972A04 +1,EP291980B04,EP291980B04,NYU_BMS_Melanoma_13059_P1,I15,iTru7_112_09,TGTGAAGC,iTru5_01_F,GTGAGACT,NYU_BMS_Melanoma_13059,pool2,EP291980B04 +1,EP087938B02,EP087938B02,NYU_BMS_Melanoma_13059_P1,K15,iTru7_112_10,GTCTGATC,iTru5_02_F,AACACGCT,NYU_BMS_Melanoma_13059,pool1,EP087938B02 +1,SP471496A04,SP471496A04,NYU_BMS_Melanoma_13059_P1,M15,iTru7_112_11,TTCAGGAG,iTru5_03_F,CCTAGAGA,NYU_BMS_Melanoma_13059,pool2,SP471496A04 +1,SP573823A04,SP573823A04,NYU_BMS_Melanoma_13059_P1,O15,iTru7_112_12,ACGATGAC,iTru5_04_F,TTCCAGGT,NYU_BMS_Melanoma_13059,pool1,SP573823A04 +1,EP393718B01,EP393718B01,NYU_BMS_Melanoma_13059_P1,A17,iTru7_113_01,CGTTATGC,iTru5_05_F,TCAGCCTT,NYU_BMS_Melanoma_13059,pool2,EP393718B01 +1,SP612496A01,SP612496A01,NYU_BMS_Melanoma_13059_P1,C17,iTru7_113_02,GATACTGG,iTru5_06_F,AGCCAACT,NYU_BMS_Melanoma_13059,pool1,SP612496A01 +1,EP032410B02,EP032410B02,NYU_BMS_Melanoma_13059_P1,E17,iTru7_113_03,CTACTTGG,iTru5_07_F,CTAGCTCA,NYU_BMS_Melanoma_13059,pool2,EP032410B02 +1,EP073216B01,EP073216B01,NYU_BMS_Melanoma_13059_P1,G17,iTru7_113_04,CATACCAC,iTru5_08_F,GGAAGAGA,NYU_BMS_Melanoma_13059,pool1,EP073216B01 +1,EP410046B01,EP410046B01,NYU_BMS_Melanoma_13059_P1,I17,iTru7_113_05,ACATTGCG,iTru5_09_F,AACACTGG,NYU_BMS_Melanoma_13059,pool2,EP410046B01 +1,SP561451A04,SP561451A04,NYU_BMS_Melanoma_13059_P1,K17,iTru7_113_06,TGATCGGA,iTru5_10_F,ACTATCGC,NYU_BMS_Melanoma_13059,pool1,SP561451A04 +1,EP320438B01,EP320438B01,NYU_BMS_Melanoma_13059_P1,M17,iTru7_113_07,AAGTGTCG,iTru5_11_F,ACAACAGC,NYU_BMS_Melanoma_13059,pool2,EP320438B01 +1,SP612495A04,SP612495A04,NYU_BMS_Melanoma_13059_P1,O17,iTru7_113_08,GAACGCTT,iTru5_12_F,TGTGGCTT,NYU_BMS_Melanoma_13059,pool1,SP612495A04 +1,EP446604B03,EP446604B03,NYU_BMS_Melanoma_13059_P1,A19,iTru7_113_09,TCAAGGAC,iTru5_01_G,GTTCCATG,NYU_BMS_Melanoma_13059,pool2,EP446604B03 +1,EP446602B01,EP446602B01,NYU_BMS_Melanoma_13059_P1,C19,iTru7_113_10,TCAACTGG,iTru5_02_G,TGGATGGT,NYU_BMS_Melanoma_13059,pool1,EP446602B01 +1,EP182243B02,EP182243B02,NYU_BMS_Melanoma_13059_P1,E19,iTru7_113_11,GGTTGATG,iTru5_03_G,GCATAACG,NYU_BMS_Melanoma_13059,pool2,EP182243B02 +1,EP333541B04,EP333541B04,NYU_BMS_Melanoma_13059_P1,G19,iTru7_113_12,AAGGACAC,iTru5_04_G,TCGAACCT,NYU_BMS_Melanoma_13059,pool1,EP333541B04 +1,EP238034B01,EP238034B01,NYU_BMS_Melanoma_13059_P1,I19,iTru7_114_01,TTGATCCG,iTru5_05_G,ACATGCCA,NYU_BMS_Melanoma_13059,pool2,EP238034B01 +1,AP298002B02,AP298002B02,NYU_BMS_Melanoma_13059_P1,K19,iTru7_114_02,GGTGATTC,iTru5_06_G,GATCTTGC,NYU_BMS_Melanoma_13059,pool1,AP298002B02 +1,EP455759B04,EP455759B04,NYU_BMS_Melanoma_13059_P1,M19,iTru7_114_03,GATTGCTC,iTru5_07_G,GTTAAGCG,NYU_BMS_Melanoma_13059,pool2,EP455759B04 +1,EP207042B04,EP207042B04,NYU_BMS_Melanoma_13059_P1,O19,iTru7_114_04,ACCTGGAA,iTru5_08_G,GTCATCGT,NYU_BMS_Melanoma_13059,pool1,EP207042B04 +1,LP128479A01,LP128479A01,NYU_BMS_Melanoma_13059_P1,A21,iTru7_114_05,CATCTACG,iTru5_09_G,TCAGACAC,NYU_BMS_Melanoma_13059,pool2,LP128479A01 +1,LP128476A01,LP128476A01,NYU_BMS_Melanoma_13059_P1,C21,iTru7_114_06,CCGTATCT,iTru5_10_G,GTCCTAAG,NYU_BMS_Melanoma_13059,pool1,LP128476A01 +1,EP316863B03,EP316863B03,NYU_BMS_Melanoma_13059_P1,E21,iTru7_114_07,CGGAATAC,iTru5_11_G,AGACCTTG,NYU_BMS_Melanoma_13059,pool2,EP316863B03 +1,C20,C20,NYU_BMS_Melanoma_13059_P1,G21,iTru7_114_08,CTCCTAGA,iTru5_12_G,AGACATGC,NYU_BMS_Melanoma_13059,pool1,C20 +1,lp127896a01,lp127896a01,NYU_BMS_Melanoma_13059_P1,I21,iTru7_114_09,TGGTAGCT,iTru5_01_H,TAGCTGAG,NYU_BMS_Melanoma_13059,pool2,lp127896a01 +1,SP491907A02,SP491907A02,NYU_BMS_Melanoma_13059_P1,K21,iTru7_114_10,TCGAAGGT,iTru5_02_H,TTCGAAGC,NYU_BMS_Melanoma_13059,pool1,SP491907A02 +1,EP182060B03,EP182060B03,NYU_BMS_Melanoma_13059_P1,M21,iTru7_114_11,ACATAGGC,iTru5_03_H,CAGTGCTT,NYU_BMS_Melanoma_13059,pool2,EP182060B03 +1,EP422407B01,EP422407B01,NYU_BMS_Melanoma_13059_P1,O21,iTru7_114_12,CTCAGAGT,iTru5_04_H,TAGTGCCA,NYU_BMS_Melanoma_13059,pool1,EP422407B01 +1,SP573859A04,SP573859A04,NYU_BMS_Melanoma_13059_P1,A23,iTru7_201_01,CTTGGATG,iTru5_05_H,GATGGAGT,NYU_BMS_Melanoma_13059,pool2,SP573859A04 +1,SP584547A02,SP584547A02,NYU_BMS_Melanoma_13059_P1,C23,iTru7_201_02,CAGTTGGA,iTru5_06_H,CCTCGTTA,NYU_BMS_Melanoma_13059,pool1,SP584547A02 +1,EP182346B04,EP182346B04,NYU_BMS_Melanoma_13059_P1,E23,iTru7_201_03,GATAGGCT,iTru5_07_H,CGATTGGA,NYU_BMS_Melanoma_13059,pool2,EP182346B04 +1,AP668631B04,AP668631B04,NYU_BMS_Melanoma_13059_P1,G23,iTru7_201_04,TTGACAGG,iTru5_08_H,CCAACGAA,NYU_BMS_Melanoma_13059,pool1,AP668631B04 +1,EP451428B04,EP451428B04,NYU_BMS_Melanoma_13059_P1,I23,iTru7_201_05,AGAATGCC,iTru5_09_H,AGAAGGAC,NYU_BMS_Melanoma_13059,pool2,EP451428B04 +1,LP128538A01,LP128538A01,NYU_BMS_Melanoma_13059_P1,K23,iTru7_201_06,CTACATCC,iTru5_10_H,TGACCGTT,NYU_BMS_Melanoma_13059,pool1,LP128538A01 +1,SP490298A02,SP490298A02,NYU_BMS_Melanoma_13059_P1,M23,iTru7_201_07,TCATGGTG,iTru5_11_H,GCGTTAGA,NYU_BMS_Melanoma_13059,pool2,SP490298A02 +1,SP573860A01,SP573860A01,NYU_BMS_Melanoma_13059_P1,O23,iTru7_201_08,TACACGCT,iTru5_12_H,TCTAGGAG,NYU_BMS_Melanoma_13059,pool1,SP573860A01 +1,EP032412B02,EP032412B02,NYU_BMS_Melanoma_13059_P2,A2,iTru7_201_09,TACGGTTG,iTru5_13_A,GGTATAGG,NYU_BMS_Melanoma_13059,pool2,EP032412B02 +1,EP163771B01,EP163771B01,NYU_BMS_Melanoma_13059_P2,C2,iTru7_201_10,GGATACCA,iTru5_14_A,TCCGATCA,NYU_BMS_Melanoma_13059,pool1,EP163771B01 +1,LP169879A01,LP169879A01,NYU_BMS_Melanoma_13059_P2,E2,iTru7_201_11,TCGACATC,iTru5_15_A,CGACCTAA,NYU_BMS_Melanoma_13059,pool2,LP169879A01 +1,EP729433A02,EP729433A02,NYU_BMS_Melanoma_13059_P2,G2,iTru7_201_12,GTTGTAGC,iTru5_16_A,GACATCTC,NYU_BMS_Melanoma_13059,pool1,EP729433A02 +1,EP447940B04,EP447940B04,NYU_BMS_Melanoma_13059_P2,I2,iTru7_202_01,ATACGACC,iTru5_17_A,CCAGTATC,NYU_BMS_Melanoma_13059,pool2,EP447940B04 +1,SP584551A08,SP584551A08,NYU_BMS_Melanoma_13059_P2,K2,iTru7_202_02,TTCCAAGG,iTru5_18_A,ACGCTTCT,NYU_BMS_Melanoma_13059,pool1,SP584551A08 +1,EP216516B04,EP216516B04,NYU_BMS_Melanoma_13059_P2,M2,iTru7_202_03,TTGCAGAC,iTru5_19_A,AACGCACA,NYU_BMS_Melanoma_13059,pool2,EP216516B04 +1,EP023808B02,EP023808B02,NYU_BMS_Melanoma_13059_P2,O2,iTru7_202_04,TGCCATTC,iTru5_20_A,TGATCACG,NYU_BMS_Melanoma_13059,pool1,EP023808B02 +1,BLANK2_2A,BLANK2.2A,NYU_BMS_Melanoma_13059_P2,A4,iTru7_202_05,GATGTGTG,iTru5_21_A,GCGTATCA,NYU_BMS_Melanoma_13059,pool2,BLANK2.2A +1,BLANK2_2B,BLANK2.2B,NYU_BMS_Melanoma_13059_P2,C4,iTru7_202_06,ACTCTCGA,iTru5_22_A,GTGTCCTT,NYU_BMS_Melanoma_13059,pool1,BLANK2.2B +1,BLANK2_2C,BLANK2.2C,NYU_BMS_Melanoma_13059_P2,E4,iTru7_202_07,GAGTCTCT,iTru5_23_A,GGTAACGT,NYU_BMS_Melanoma_13059,pool2,BLANK2.2C +1,BLANK2_2D,BLANK2.2D,NYU_BMS_Melanoma_13059_P2,G4,iTru7_202_08,CAACACCT,iTru5_24_A,CGAGAGAA,NYU_BMS_Melanoma_13059,pool1,BLANK2.2D +1,BLANK2_2E,BLANK2.2E,NYU_BMS_Melanoma_13059_P2,I4,iTru7_202_09,CAGTCTTC,iTru5_13_B,CATTGACG,NYU_BMS_Melanoma_13059,pool2,BLANK2.2E +1,BLANK2_2F,BLANK2.2F,NYU_BMS_Melanoma_13059_P2,K4,iTru7_202_10,GGACTGTT,iTru5_14_B,GGTGATGA,NYU_BMS_Melanoma_13059,pool1,BLANK2.2F +1,BLANK2_2G,BLANK2.2G,NYU_BMS_Melanoma_13059_P2,M4,iTru7_202_11,CTTAGTGG,iTru5_15_B,AACCGTGT,NYU_BMS_Melanoma_13059,pool2,BLANK2.2G +1,BLANK2_2H,BLANK2.2H,NYU_BMS_Melanoma_13059_P2,O4,iTru7_202_12,ATTGCGTG,iTru5_16_B,CCTATTGG,NYU_BMS_Melanoma_13059,pool1,BLANK2.2H +1,SP573843A04,SP573843A04,NYU_BMS_Melanoma_13059_P2,A6,iTru7_203_01,GTAACGAC,iTru5_17_B,TCAGTAGG,NYU_BMS_Melanoma_13059,pool2,SP573843A04 +1,EP683835A01,EP683835A01,NYU_BMS_Melanoma_13059_P2,C6,iTru7_203_02,CTTGCTGT,iTru5_18_B,TATGCGGT,NYU_BMS_Melanoma_13059,pool1,EP683835A01 +1,SP573824A04,SP573824A04,NYU_BMS_Melanoma_13059_P2,E6,iTru7_203_03,GTTGTTCG,iTru5_19_B,ATGCCTAG,NYU_BMS_Melanoma_13059,pool2,SP573824A04 +1,SP335002A04,SP335002A04,NYU_BMS_Melanoma_13059_P2,G6,iTru7_203_04,CGTTGAGT,iTru5_20_B,CTAGCAGT,NYU_BMS_Melanoma_13059,pool1,SP335002A04 +1,SP478193A02,SP478193A02,NYU_BMS_Melanoma_13059_P2,I6,iTru7_203_05,TCGAACCA,iTru5_21_B,AGGTCAAC,NYU_BMS_Melanoma_13059,pool2,SP478193A02 +1,SP232311A04,SP232311A04,NYU_BMS_Melanoma_13059_P2,K6,iTru7_203_06,AGACCGTA,iTru5_22_B,GAACGTGA,NYU_BMS_Melanoma_13059,pool1,SP232311A04 +1,SP415021A02,SP415021A02,NYU_BMS_Melanoma_13059_P2,M6,iTru7_203_07,CAGAGTGT,iTru5_23_B,ATCATGCG,NYU_BMS_Melanoma_13059,pool2,SP415021A02 +1,SP231630A02,SP231630A02,NYU_BMS_Melanoma_13059_P2,O6,iTru7_203_08,GACAAGAG,iTru5_24_B,CAACGAGT,NYU_BMS_Melanoma_13059,pool1,SP231630A02 +1,SP641029A02,SP641029A02,NYU_BMS_Melanoma_13059_P2,A8,iTru7_203_09,GAACACAC,iTru5_13_C,CGCAATGT,NYU_BMS_Melanoma_13059,pool2,SP641029A02 +1,SP232310A04,SP232310A04,NYU_BMS_Melanoma_13059_P2,C8,iTru7_203_10,GCTTAGCT,iTru5_14_C,AACAAGGC,NYU_BMS_Melanoma_13059,pool1,SP232310A04 +1,EP617442B01,EP617442B01,NYU_BMS_Melanoma_13059_P2,E8,iTru7_203_11,GAAGGAAG,iTru5_15_C,ACCATGTC,NYU_BMS_Melanoma_13059,pool2,EP617442B01 +1,EP587478B04,EP587478B04,NYU_BMS_Melanoma_13059_P2,G8,iTru7_203_12,CAGTTCTG,iTru5_16_C,AATCCAGC,NYU_BMS_Melanoma_13059,pool1,EP587478B04 +1,EP447928B04,EP447928B04,NYU_BMS_Melanoma_13059_P2,I8,iTru7_204_01,CAGGAGAT,iTru5_17_C,TTGCAACG,NYU_BMS_Melanoma_13059,pool2,EP447928B04 +1,EP587475B04,EP587475B04,NYU_BMS_Melanoma_13059_P2,K8,iTru7_204_02,GTAGCATC,iTru5_18_C,ACCTTCGA,NYU_BMS_Melanoma_13059,pool1,EP587475B04 +1,EP675042B01,EP675042B01,NYU_BMS_Melanoma_13059_P2,M8,iTru7_204_03,TCGTTCGT,iTru5_19_C,CATACGGA,NYU_BMS_Melanoma_13059,pool2,EP675042B01 +1,EP554513B02,EP554513B02,NYU_BMS_Melanoma_13059_P2,O8,iTru7_204_04,GGCAAGTT,iTru5_20_C,GACCGATA,NYU_BMS_Melanoma_13059,pool1,EP554513B02 +1,EP702221B04,EP702221B04,NYU_BMS_Melanoma_13059_P2,A10,iTru7_204_05,ACCATGTG,iTru5_21_C,AAGCTGGT,NYU_BMS_Melanoma_13059,pool2,EP702221B04 +1,AP568787B02,AP568787B02,NYU_BMS_Melanoma_13059_P2,C10,iTru7_204_06,CAACGGAT,iTru5_22_C,ACACCTCA,NYU_BMS_Melanoma_13059,pool1,AP568787B02 +1,EP054632B01,EP054632B01,NYU_BMS_Melanoma_13059_P2,E10,iTru7_204_07,CAATCGAC,iTru5_23_C,CGGAGTAT,NYU_BMS_Melanoma_13059,pool2,EP054632B01 +1,EP121013B01,EP121013B01,NYU_BMS_Melanoma_13059_P2,G10,iTru7_204_08,GTGTTCCT,iTru5_24_C,CTCGACTT,NYU_BMS_Melanoma_13059,pool1,EP121013B01 +1,EP649418A02,EP649418A02,NYU_BMS_Melanoma_13059_P2,I10,iTru7_204_09,AGGAACCT,iTru5_13_D,ATCCACGA,NYU_BMS_Melanoma_13059,pool2,EP649418A02 +1,EP573313B01,EP573313B01,NYU_BMS_Melanoma_13059_P2,K10,iTru7_204_10,ACCTTCTC,iTru5_14_D,ACAGTTCG,NYU_BMS_Melanoma_13059,pool1,EP573313B01 +1,LP154981A01,LP154981A01,NYU_BMS_Melanoma_13059_P2,M10,iTru7_204_11,CCGTAAGA,iTru5_15_D,ACAAGACG,NYU_BMS_Melanoma_13059,pool2,LP154981A01 +1,AP470859B01,AP470859B01,NYU_BMS_Melanoma_13059_P2,O10,iTru7_204_12,ATCGGTGT,iTru5_16_D,ATCGTGGT,NYU_BMS_Melanoma_13059,pool1,AP470859B01 +1,LP154986A01,LP154986A01,NYU_BMS_Melanoma_13059_P2,A12,iTru7_205_01,AGCTCCTA,iTru5_17_D,AGTCAGGT,NYU_BMS_Melanoma_13059,pool2,LP154986A01 +1,AP732307B04,AP732307B04,NYU_BMS_Melanoma_13059_P2,C12,iTru7_205_02,CCTTGATC,iTru5_18_D,CATCAACC,NYU_BMS_Melanoma_13059,pool1,AP732307B04 +1,EP533426B03,EP533426B03,NYU_BMS_Melanoma_13059_P2,E12,iTru7_205_03,CCATTCAC,iTru5_19_D,GGTCACTA,NYU_BMS_Melanoma_13059,pool2,EP533426B03 +1,EP587476B04,EP587476B04,NYU_BMS_Melanoma_13059_P2,G12,iTru7_205_04,GGACAATC,iTru5_20_D,CGGCATTA,NYU_BMS_Melanoma_13059,pool1,EP587476B04 +1,AP696363B02,AP696363B02,NYU_BMS_Melanoma_13059_P2,I12,iTru7_205_05,AAGGCGTT,iTru5_21_D,ACTCGATC,NYU_BMS_Melanoma_13059,pool2,AP696363B02 +1,EP587477B04,EP587477B04,NYU_BMS_Melanoma_13059_P2,K12,iTru7_205_06,GCCATAAC,iTru5_22_D,ATAGGTCC,NYU_BMS_Melanoma_13059,pool1,EP587477B04 +1,SP683466A02,SP683466A02,NYU_BMS_Melanoma_13059_P2,M12,iTru7_205_07,GAAGTTGG,iTru5_23_D,CAGTCACA,NYU_BMS_Melanoma_13059,pool2,SP683466A02 +1,EP554518B04,EP554518B04,NYU_BMS_Melanoma_13059_P2,O12,iTru7_205_08,AGCCAAGT,iTru5_24_D,TAGTGGTG,NYU_BMS_Melanoma_13059,pool1,EP554518B04 +1,EP533429B04,EP533429B04,NYU_BMS_Melanoma_13059_P2,A14,iTru7_205_09,TGACTGAC,iTru5_13_E,CTCCTGAA,NYU_BMS_Melanoma_13059,pool2,EP533429B04 +1,EP431570B01,EP431570B01,NYU_BMS_Melanoma_13059_P2,C14,iTru7_205_10,CACCTGTT,iTru5_14_E,AATCGCTG,NYU_BMS_Melanoma_13059,pool1,EP431570B01 +1,EP202095B04,EP202095B04,NYU_BMS_Melanoma_13059_P2,E14,iTru7_205_11,ATCCGGTA,iTru5_15_E,TGATAGGC,NYU_BMS_Melanoma_13059,pool2,EP202095B04 +1,EP504030B04,EP504030B04,NYU_BMS_Melanoma_13059_P2,G14,iTru7_205_12,ATCTGTCC,iTru5_16_E,ATGCGTCA,NYU_BMS_Melanoma_13059,pool1,EP504030B04 +1,EP207036B01,EP207036B01,NYU_BMS_Melanoma_13059_P2,I14,iTru7_206_01,CCAAGACT,iTru5_17_E,CAGCATAC,NYU_BMS_Melanoma_13059,pool2,EP207036B01 +1,EP393717B01,EP393717B01,NYU_BMS_Melanoma_13059_P2,K14,iTru7_206_02,ATGGCGAA,iTru5_18_E,AAGTGCAG,NYU_BMS_Melanoma_13059,pool1,EP393717B01 +1,SP491898A02,SP491898A02,NYU_BMS_Melanoma_13059_P2,M14,iTru7_206_03,GGTAGTGT,iTru5_19_E,GTATTCCG,NYU_BMS_Melanoma_13059,pool2,SP491898A02 +1,EP484973B04,EP484973B04,NYU_BMS_Melanoma_13059_P2,O14,iTru7_206_04,TCGCTGTT,iTru5_20_E,GTGATCCA,NYU_BMS_Melanoma_13059,pool1,EP484973B04 +1,EP479794B02,EP479794B02,NYU_BMS_Melanoma_13059_P2,A16,iTru7_206_05,AACGTGGA,iTru5_21_E,TATGGCAC,NYU_BMS_Melanoma_13059,pool2,EP479794B02 +1,EP554515B04,EP554515B04,NYU_BMS_Melanoma_13059_P2,C16,iTru7_206_06,AACGACGT,iTru5_22_E,ACCATAGG,NYU_BMS_Melanoma_13059,pool1,EP554515B04 +1,SP631994A04,SP631994A04,NYU_BMS_Melanoma_13059_P2,E16,iTru7_206_07,AACAGGAC,iTru5_23_E,CTCCAATC,NYU_BMS_Melanoma_13059,pool2,SP631994A04 +1,EP921593A04,EP921593A04,NYU_BMS_Melanoma_13059_P2,G16,iTru7_206_08,AAGCGCAT,iTru5_24_E,AGATACGG,NYU_BMS_Melanoma_13059,pool1,EP921593A04 +1,AP787247B04,AP787247B04,NYU_BMS_Melanoma_13059_P2,I16,iTru7_206_09,CACTGACA,iTru5_13_F,TCGATGAC,NYU_BMS_Melanoma_13059,pool2,AP787247B04 +1,EP090129B04,EP090129B04,NYU_BMS_Melanoma_13059_P2,K16,iTru7_206_10,AGGTCACT,iTru5_14_F,CCAACACT,NYU_BMS_Melanoma_13059,pool1,EP090129B04 +1,EP447975B02,EP447975B02,NYU_BMS_Melanoma_13059_P2,M16,iTru7_206_11,GTCACTGT,iTru5_15_F,CTTCACTG,NYU_BMS_Melanoma_13059,pool2,EP447975B02 +1,EP212214B01,EP212214B01,NYU_BMS_Melanoma_13059_P2,O16,iTru7_206_12,ATGCCAAC,iTru5_16_F,CGATGTTC,NYU_BMS_Melanoma_13059,pool1,EP212214B01 +1,EP410042B01,EP410042B01,NYU_BMS_Melanoma_13059_P2,A18,iTru7_207_01,CACGTTGT,iTru5_17_F,ACCGGTTA,NYU_BMS_Melanoma_13059,pool2,EP410042B01 +1,SP404409A02,SP404409A02,NYU_BMS_Melanoma_13059_P2,C18,iTru7_207_02,TATTCCGG,iTru5_18_F,CTTACAGC,NYU_BMS_Melanoma_13059,pool1,SP404409A02 +1,SP247340A04,SP247340A04,NYU_BMS_Melanoma_13059_P2,E18,iTru7_207_03,TGCTTCCA,iTru5_19_F,TGGCTCTT,NYU_BMS_Melanoma_13059,pool2,SP247340A04 +1,AP029018B01,AP029018B01,NYU_BMS_Melanoma_13059_P2,G18,iTru7_207_04,GTCTAGGT,iTru5_20_F,AAGACCGT,NYU_BMS_Melanoma_13059,pool1,AP029018B01 +1,EP872341A01,EP872341A01,NYU_BMS_Melanoma_13059_P2,I18,iTru7_207_05,GTTCAACC,iTru5_21_F,GGACATCA,NYU_BMS_Melanoma_13059,pool2,EP872341A01 +1,AP062219B03,AP062219B03,NYU_BMS_Melanoma_13059_P2,K18,iTru7_207_06,CGCAATCT,iTru5_22_F,TTGGTGCA,NYU_BMS_Melanoma_13059,pool1,AP062219B03 +1,EP790020A02,EP790020A02,NYU_BMS_Melanoma_13059_P2,M18,iTru7_207_07,TTAAGCGG,iTru5_23_F,AAGCGTTC,NYU_BMS_Melanoma_13059,pool2,EP790020A02 +1,EP808112A04,EP808112A04,NYU_BMS_Melanoma_13059_P2,O18,iTru7_207_08,TGCTTGGT,iTru5_24_F,ACTCTCCA,NYU_BMS_Melanoma_13059,pool1,EP808112A04 +1,SP404403A02,SP404403A02,NYU_BMS_Melanoma_13059_P2,A20,iTru7_207_09,ACACACTC,iTru5_13_G,GAACCTTC,NYU_BMS_Melanoma_13059,pool2,SP404403A02 +1,EP073160B01,EP073160B01,NYU_BMS_Melanoma_13059_P2,C20,iTru7_207_10,CCACTTCT,iTru5_14_G,GGAACATG,NYU_BMS_Melanoma_13059,pool1,EP073160B01 +1,EP012991B03,EP012991B03,NYU_BMS_Melanoma_13059_P2,E20,iTru7_207_11,TTGGTCTC,iTru5_15_G,GCCTATGT,NYU_BMS_Melanoma_13059,pool2,EP012991B03 +1,SP317297A02,SP317297A02,NYU_BMS_Melanoma_13059_P2,G20,iTru7_207_12,CTCATCAG,iTru5_16_G,CCGTAACT,NYU_BMS_Melanoma_13059,pool1,SP317297A02 +1,EP656055A04,EP656055A04,NYU_BMS_Melanoma_13059_P2,I20,iTru7_208_01,ATGACGTC,iTru5_17_G,CGGATCAA,NYU_BMS_Melanoma_13059,pool2,EP656055A04 +1,EP649623A01,EP649623A01,NYU_BMS_Melanoma_13059_P2,K20,iTru7_208_02,AACCTTGG,iTru5_18_G,CCACATTG,NYU_BMS_Melanoma_13059,pool1,EP649623A01 +1,EP790019A01,EP790019A01,NYU_BMS_Melanoma_13059_P2,M20,iTru7_208_03,GTCTTGCA,iTru5_19_G,CTCTATCG,NYU_BMS_Melanoma_13059,pool2,EP790019A01 +1,SP257519A04,SP257519A04,NYU_BMS_Melanoma_13059_P2,O20,iTru7_208_04,CAAGTGCA,iTru5_20_G,TGTGTCAG,NYU_BMS_Melanoma_13059,pool1,SP257519A04 +1,EP808104A01,EP808104A01,NYU_BMS_Melanoma_13059_P2,A22,iTru7_208_05,TCCGAGTT,iTru5_21_G,CGCAACTA,NYU_BMS_Melanoma_13059,pool2,EP808104A01 +1,EP808106A01,EP808106A01,NYU_BMS_Melanoma_13059_P2,C22,iTru7_208_06,ACCTAAGG,iTru5_22_G,GATCAGAC,NYU_BMS_Melanoma_13059,pool1,EP808106A01 +1,SP231629A02,SP231629A02,NYU_BMS_Melanoma_13059_P2,E22,iTru7_208_07,TTGGACGT,iTru5_23_G,ATTCCGCT,NYU_BMS_Melanoma_13059,pool2,SP231629A02 +1,EP675044A01,EP675044A01,NYU_BMS_Melanoma_13059_P2,G22,iTru7_208_08,GATAGCGA,iTru5_24_G,ATCCTTCC,NYU_BMS_Melanoma_13059,pool1,EP675044A01 +1,EP657260A01,EP657260A01,NYU_BMS_Melanoma_13059_P2,I22,iTru7_208_09,TTGGTGAG,iTru5_13_H,GCTTCACA,NYU_BMS_Melanoma_13059,pool2,EP657260A01 +1,EP808110A04,EP808110A04,NYU_BMS_Melanoma_13059_P2,K22,iTru7_208_10,AACTGGTG,iTru5_14_H,CTTCGGTT,NYU_BMS_Melanoma_13059,pool1,EP808110A04 +1,AP032413B04,AP032413B04,NYU_BMS_Melanoma_13059_P2,M22,iTru7_208_11,TAGCCGAA,iTru5_15_H,CATGGATC,NYU_BMS_Melanoma_13059,pool2,AP032413B04 +1,EP843906A04,EP843906A04,NYU_BMS_Melanoma_13059_P2,O22,iTru7_208_12,TGCGAACT,iTru5_16_H,GTCAACAG,NYU_BMS_Melanoma_13059,pool1,EP843906A04 +1,AP173305B04,AP173305B04,NYU_BMS_Melanoma_13059_P2,A24,iTru7_209_01,GACTTAGG,iTru5_17_H,AATTCCGG,NYU_BMS_Melanoma_13059,pool2,AP173305B04 +1,SP231628A02,SP231628A02,NYU_BMS_Melanoma_13059_P2,C24,iTru7_209_02,ACACCAGT,iTru5_18_H,GGCGAATA,NYU_BMS_Melanoma_13059,pool1,SP231628A02 +1,AP173301B04,AP173301B04,NYU_BMS_Melanoma_13059_P2,E24,iTru7_209_03,CCTGATTG,iTru5_19_H,AGGAGGTT,NYU_BMS_Melanoma_13059,pool2,AP173301B04 +1,SP404405A02,SP404405A02,NYU_BMS_Melanoma_13059_P2,G24,iTru7_209_04,TTGTGTGC,iTru5_20_H,ACTCTGAG,NYU_BMS_Melanoma_13059,pool1,SP404405A02 +1,EP649653A04,EP649653A04,NYU_BMS_Melanoma_13059_P2,I24,iTru7_209_05,TACCACAG,iTru5_21_H,GCCTTCTT,NYU_BMS_Melanoma_13059,pool2,EP649653A04 +1,EP718687A04,EP718687A04,NYU_BMS_Melanoma_13059_P2,K24,iTru7_209_06,ATTCGAGG,iTru5_22_H,TGGACCAT,NYU_BMS_Melanoma_13059,pool1,EP718687A04 +1,AP905750A02,AP905750A02,NYU_BMS_Melanoma_13059_P2,M24,iTru7_209_07,GCACGTAA,iTru5_23_H,GCATAGTC,NYU_BMS_Melanoma_13059,pool2,AP905750A02 +1,EP738468A01,EP738468A01,NYU_BMS_Melanoma_13059_P2,O24,iTru7_209_08,GTGTGACA,iTru5_24_H,TACACACG,NYU_BMS_Melanoma_13059,pool1,EP738468A01 +1,C6,C6,NYU_BMS_Melanoma_13059_P3,B1,iTru7_209_09,CTGGTTCT,iTru5_101_A,AACAACCG,NYU_BMS_Melanoma_13059,pool2,C6 +1,EP890157A02,EP890157A02,NYU_BMS_Melanoma_13059_P3,D1,iTru7_209_10,ACTGTGTC,iTru5_102_A,AAGCCTGA,NYU_BMS_Melanoma_13059,pool1,EP890157A02 +1,SP353893A02,SP353893A02,NYU_BMS_Melanoma_13059_P3,F1,iTru7_209_11,CCATACGT,iTru5_103_A,AAGGACCA,NYU_BMS_Melanoma_13059,pool2,SP353893A02 +1,EP944059A02,EP944059A02,NYU_BMS_Melanoma_13059_P3,H1,iTru7_209_12,GGTACTAC,iTru5_104_A,ACAACGTG,NYU_BMS_Melanoma_13059,pool1,EP944059A02 +1,EP970005A01,EP970005A01,NYU_BMS_Melanoma_13059_P3,J1,iTru7_210_01,CAGTCCAA,iTru5_105_A,ACGAACGA,NYU_BMS_Melanoma_13059,pool2,EP970005A01 +1,EP927461A04,EP927461A04,NYU_BMS_Melanoma_13059_P3,L1,iTru7_210_02,TCGTAGTC,iTru5_106_A,ACGTCCAA,NYU_BMS_Melanoma_13059,pool1,EP927461A04 +1,EP808111A03,EP808111A03,NYU_BMS_Melanoma_13059_P3,N1,iTru7_210_03,TCGAGTGA,iTru5_107_A,ACTGGTGT,NYU_BMS_Melanoma_13059,pool2,EP808111A03 +1,EP927459A04,EP927459A04,NYU_BMS_Melanoma_13059_P3,P1,iTru7_210_04,TGTAGCCA,iTru5_108_A,AGATCGTC,NYU_BMS_Melanoma_13059,pool1,EP927459A04 +1,SP317293A02,SP317293A02,NYU_BMS_Melanoma_13059_P3,B3,iTru7_210_05,TGCAGGTA,iTru5_109_A,AGCGAGAT,NYU_BMS_Melanoma_13059,pool2,SP317293A02 +1,SP235186A04,SP235186A04,NYU_BMS_Melanoma_13059_P3,D3,iTru7_210_06,CTAGGTGA,iTru5_110_A,AGGATAGC,NYU_BMS_Melanoma_13059,pool1,SP235186A04 +1,SP399724A04,SP399724A04,NYU_BMS_Melanoma_13059_P3,F3,iTru7_210_07,CTCCATGT,iTru5_111_A,AGGTGTTG,NYU_BMS_Melanoma_13059,pool2,SP399724A04 +1,EP738469A01,EP738469A01,NYU_BMS_Melanoma_13059_P3,H3,iTru7_210_08,CTTACAGC,iTru5_112_A,AGTCTTGG,NYU_BMS_Melanoma_13059,pool1,EP738469A01 +1,SP284095A03,SP284095A03,NYU_BMS_Melanoma_13059_P3,J3,iTru7_210_09,CGTATTCG,iTru5_101_B,GGTTGGTA,NYU_BMS_Melanoma_13059,pool2,SP284095A03 +1,C5,C5,NYU_BMS_Melanoma_13059_P3,L3,iTru7_210_10,ATTCTGGC,iTru5_102_B,GGAGGAAT,NYU_BMS_Melanoma_13059,pool1,C5 +1,EP337325B04,EP337325B04,NYU_BMS_Melanoma_13059_P3,N3,iTru7_210_11,TACCAGGA,iTru5_103_B,GTAAGGTG,NYU_BMS_Melanoma_13059,pool2,EP337325B04 +1,EP759450A04,EP759450A04,NYU_BMS_Melanoma_13059_P3,P3,iTru7_210_12,TACATCGG,iTru5_104_B,GGTGTACA,NYU_BMS_Melanoma_13059,pool1,EP759450A04 +1,BLANK3_3A,BLANK3.3A,NYU_BMS_Melanoma_13059_P3,B5,iTru7_301_01,GTGGTGTT,iTru5_105_B,GGATGTAG,NYU_BMS_Melanoma_13059,pool2,BLANK3.3A +1,BLANK3_3B,BLANK3.3B,NYU_BMS_Melanoma_13059_P3,D5,iTru7_301_02,CGCATGAT,iTru5_106_B,GTCCTGTT,NYU_BMS_Melanoma_13059,pool1,BLANK3.3B +1,BLANK3_3C,BLANK3.3C,NYU_BMS_Melanoma_13059_P3,F5,iTru7_301_03,AGTCGACA,iTru5_107_B,GTACCACA,NYU_BMS_Melanoma_13059,pool2,BLANK3.3C +1,BLANK3_3D,BLANK3.3D,NYU_BMS_Melanoma_13059_P3,H5,iTru7_301_04,GTGAGCTT,iTru5_108_B,GATCTCAG,NYU_BMS_Melanoma_13059,pool1,BLANK3.3D +1,BLANK3_3E,BLANK3.3E,NYU_BMS_Melanoma_13059_P3,J5,iTru7_301_05,GACATTCC,iTru5_109_B,GAGCTCTA,NYU_BMS_Melanoma_13059,pool2,BLANK3.3E +1,BLANK3_3F,BLANK3.3F,NYU_BMS_Melanoma_13059_P3,L5,iTru7_301_06,AGTTCGTC,iTru5_110_B,TACTAGCG,NYU_BMS_Melanoma_13059,pool1,BLANK3.3F +1,BLANK3_3G,BLANK3.3G,NYU_BMS_Melanoma_13059_P3,N5,iTru7_301_07,TAATGCCG,iTru5_111_B,GCACACAA,NYU_BMS_Melanoma_13059,pool2,BLANK3.3G +1,BLANK3_3H,BLANK3.3H,NYU_BMS_Melanoma_13059_P3,P5,iTru7_301_08,CGACCATT,iTru5_112_B,GAATCACC,NYU_BMS_Melanoma_13059,pool1,BLANK3.3H +1,AP006367B02,AP006367B02,NYU_BMS_Melanoma_13059_P3,B7,iTru7_301_09,CTGAAGCT,iTru5_101_C,AACAGCGA,NYU_BMS_Melanoma_13059,pool2,AP006367B02 +1,EP929277A02,EP929277A02,NYU_BMS_Melanoma_13059_P3,D7,iTru7_301_10,TTGAGGCA,iTru5_102_C,AAGCGACT,NYU_BMS_Melanoma_13059,pool1,EP929277A02 +1,AP324642B04,AP324642B04,NYU_BMS_Melanoma_13059_P3,F7,iTru7_301_11,GATCGAGT,iTru5_103_C,AAGGCGTA,NYU_BMS_Melanoma_13059,pool2,AP324642B04 +1,EP786631A04,EP786631A04,NYU_BMS_Melanoma_13059_P3,H7,iTru7_301_12,ATACTCCG,iTru5_104_C,ACACCGAT,NYU_BMS_Melanoma_13059,pool1,EP786631A04 +1,EP657385A04,EP657385A04,NYU_BMS_Melanoma_13059_P3,J7,iTru7_302_01,AAGTCCGT,iTru5_105_C,ACGAATCC,NYU_BMS_Melanoma_13059,pool2,EP657385A04 +1,SP235189A01,SP235189A01,NYU_BMS_Melanoma_13059_P3,L7,iTru7_302_02,TAGCGTCT,iTru5_106_C,ACTACGGT,NYU_BMS_Melanoma_13059,pool1,SP235189A01 +1,EP448041B04,EP448041B04,NYU_BMS_Melanoma_13059_P3,N7,iTru7_302_03,TGACGCAT,iTru5_107_C,AGAAGCCT,NYU_BMS_Melanoma_13059,pool2,EP448041B04 +1,SP231631A02,SP231631A02,NYU_BMS_Melanoma_13059_P3,P7,iTru7_302_04,AGCGTGTT,iTru5_108_C,AGATTGCG,NYU_BMS_Melanoma_13059,pool1,SP231631A02 +1,SP280481A02,SP280481A02,NYU_BMS_Melanoma_13059_P3,B9,iTru7_302_05,TGCACCAA,iTru5_109_C,AGCGTGTA,NYU_BMS_Melanoma_13059,pool2,SP280481A02 +1,AP032412B04,AP032412B04,NYU_BMS_Melanoma_13059_P3,D9,iTru7_302_06,ATCACACG,iTru5_110_C,AGGCTGAA,NYU_BMS_Melanoma_13059,pool1,AP032412B04 +1,EP649737A03,EP649737A03,NYU_BMS_Melanoma_13059_P3,F9,iTru7_302_07,ATGCCTGT,iTru5_111_C,AGGTTCCT,NYU_BMS_Melanoma_13059,pool2,EP649737A03 +1,AP967057A04,AP967057A04,NYU_BMS_Melanoma_13059_P3,H9,iTru7_302_08,ACCTGACT,iTru5_112_C,AGTGACCT,NYU_BMS_Melanoma_13059,pool1,AP967057A04 +1,EP876243A04,EP876243A04,NYU_BMS_Melanoma_13059_P3,J9,iTru7_302_09,GCTTCGAA,iTru5_101_D,GGTTAGCT,NYU_BMS_Melanoma_13059,pool2,EP876243A04 +1,SP229387A04,SP229387A04,NYU_BMS_Melanoma_13059_P3,L9,iTru7_302_10,CGGTCATA,iTru5_102_D,GTAGCGTA,NYU_BMS_Melanoma_13059,pool1,SP229387A04 +1,EP667743A04,EP667743A04,NYU_BMS_Melanoma_13059_P3,N9,iTru7_302_11,GTTAGACG,iTru5_103_D,GGACTACT,NYU_BMS_Melanoma_13059,pool2,EP667743A04 +1,SP246941A01,SP246941A01,NYU_BMS_Melanoma_13059_P3,P9,iTru7_302_12,TCTAACGC,iTru5_104_D,TGGTTCGA,NYU_BMS_Melanoma_13059,pool1,SP246941A01 +1,AP745799A04,AP745799A04,NYU_BMS_Melanoma_13059_P3,B11,iTru7_303_01,ATAGCGGT,iTru5_105_D,GGAGTCTT,NYU_BMS_Melanoma_13059,pool2,AP745799A04 +1,SP205732A02,SP205732A02,NYU_BMS_Melanoma_13059_P3,D11,iTru7_303_02,GGACCTAT,iTru5_106_D,GGATTCAC,NYU_BMS_Melanoma_13059,pool1,SP205732A02 +1,SP230382A04,SP230382A04,NYU_BMS_Melanoma_13059_P3,F11,iTru7_303_03,CGATGCTT,iTru5_107_D,TCGGATTC,NYU_BMS_Melanoma_13059,pool2,SP230382A04 +1,SP230380A02,SP230380A02,NYU_BMS_Melanoma_13059_P3,H11,iTru7_303_04,GAGCTTGT,iTru5_108_D,GAGCAATC,NYU_BMS_Melanoma_13059,pool1,SP230380A02 +1,SP230381A01,SP230381A01,NYU_BMS_Melanoma_13059_P3,J11,iTru7_303_05,GTGAAGTG,iTru5_109_D,GATCCACT,NYU_BMS_Melanoma_13059,pool2,SP230381A01 +1,SP205754A01,SP205754A01,NYU_BMS_Melanoma_13059_P3,L11,iTru7_303_06,GAGTGGTT,iTru5_110_D,GAAGACTG,NYU_BMS_Melanoma_13059,pool1,SP205754A01 +1,EP606662B04,EP606662B04,NYU_BMS_Melanoma_13059_P3,N11,iTru7_303_07,TGATACGC,iTru5_111_D,GCCACTTA,NYU_BMS_Melanoma_13059,pool2,EP606662B04 +1,AP780167B02,AP780167B02,NYU_BMS_Melanoma_13059_P3,P11,iTru7_303_08,AGCAGATG,iTru5_112_D,TCCATTGC,NYU_BMS_Melanoma_13059,pool1,AP780167B02 +1,EP447927B04,EP447927B04,NYU_BMS_Melanoma_13059_P3,B13,iTru7_303_09,CCAGTGTT,iTru5_101_E,AACAGTCC,NYU_BMS_Melanoma_13059,pool2,EP447927B04 +1,C18,C18,NYU_BMS_Melanoma_13059_P3,D13,iTru7_303_10,ATTCCTCC,iTru5_102_E,AAGCTCAC,NYU_BMS_Melanoma_13059,pool1,C18 +1,LP191039A01,LP191039A01,NYU_BMS_Melanoma_13059_P3,F13,iTru7_303_11,CTAACTCG,iTru5_103_E,AAGTCCTC,NYU_BMS_Melanoma_13059,pool2,LP191039A01 +1,EP606663B04,EP606663B04,NYU_BMS_Melanoma_13059_P3,H13,iTru7_303_12,GATGAGAC,iTru5_104_E,ACACTCTG,NYU_BMS_Melanoma_13059,pool1,EP606663B04 +1,EP573296B01,EP573296B01,NYU_BMS_Melanoma_13059_P3,J13,iTru7_304_01,TCAGGCTT,iTru5_105_E,ACGGTACA,NYU_BMS_Melanoma_13059,pool2,EP573296B01 +1,EP447926B04,EP447926B04,NYU_BMS_Melanoma_13059_P3,L13,iTru7_304_02,GTTCTCGT,iTru5_106_E,ACTCCTAC,NYU_BMS_Melanoma_13059,pool1,EP447926B04 +1,LP127767A01,LP127767A01,NYU_BMS_Melanoma_13059_P3,N13,iTru7_304_03,ATCGATCG,iTru5_107_E,AGAGGATG,NYU_BMS_Melanoma_13059,pool2,LP127767A01 +1,EP479266B04,EP479266B04,NYU_BMS_Melanoma_13059_P3,P13,iTru7_304_04,CCTCAGTT,iTru5_108_E,AGCCGTAA,NYU_BMS_Melanoma_13059,pool1,EP479266B04 +1,LP128543A01,LP128543A01,NYU_BMS_Melanoma_13059_P3,B15,iTru7_304_05,ACTGCTAG,iTru5_109_E,AGCTTCAG,NYU_BMS_Melanoma_13059,pool2,LP128543A01 +1,EP479270B03,EP479270B03,NYU_BMS_Melanoma_13059_P3,D15,iTru7_304_06,TCCGTGAA,iTru5_110_E,AGGTAGGA,NYU_BMS_Melanoma_13059,pool1,EP479270B03 +1,EP921594A04,EP921594A04,NYU_BMS_Melanoma_13059_P3,F15,iTru7_304_07,GGATTCGT,iTru5_111_E,AGTACACG,NYU_BMS_Melanoma_13059,pool2,EP921594A04 +1,EP554501B04,EP554501B04,NYU_BMS_Melanoma_13059_P3,H15,iTru7_304_08,GGTCAGAT,iTru5_112_E,AGTGCATC,NYU_BMS_Melanoma_13059,pool1,EP554501B04 +1,EP542577B04,EP542577B04,NYU_BMS_Melanoma_13059_P3,J15,iTru7_304_09,TCGTGGAT,iTru5_101_F,TTGGACTG,NYU_BMS_Melanoma_13059,pool2,EP542577B04 +1,EP487995B04,EP487995B04,NYU_BMS_Melanoma_13059_P3,L15,iTru7_304_10,CGTGTGTA,iTru5_102_F,GTCGATTG,NYU_BMS_Melanoma_13059,pool1,EP487995B04 +1,EP542578B04,EP542578B04,NYU_BMS_Melanoma_13059_P3,N15,iTru7_304_11,GTGTCTGA,iTru5_103_F,GGCATTCT,NYU_BMS_Melanoma_13059,pool2,EP542578B04 +1,EP573310B01,EP573310B01,NYU_BMS_Melanoma_13059_P3,P15,iTru7_304_12,GAATCGTG,iTru5_104_F,TGGTATCC,NYU_BMS_Melanoma_13059,pool1,EP573310B01 +1,EP244366B01,EP244366B01,NYU_BMS_Melanoma_13059_P3,B17,iTru7_305_01,GCGATAGT,iTru5_105_F,GGCAAGTT,NYU_BMS_Melanoma_13059,pool2,EP244366B01 +1,EP533389B03,EP533389B03,NYU_BMS_Melanoma_13059_P3,D17,iTru7_305_02,GGCTATTG,iTru5_106_F,GTCTGAGT,NYU_BMS_Melanoma_13059,pool1,EP533389B03 +1,EP244360B01,EP244360B01,NYU_BMS_Melanoma_13059_P3,F17,iTru7_305_03,AGTTACGG,iTru5_107_F,TCTACGCA,NYU_BMS_Melanoma_13059,pool2,EP244360B01 +1,AP911328B01,AP911328B01,NYU_BMS_Melanoma_13059_P3,H17,iTru7_305_04,CGTACGAA,iTru5_108_F,GAGGCATT,NYU_BMS_Melanoma_13059,pool1,AP911328B01 +1,AP481403B02,AP481403B02,NYU_BMS_Melanoma_13059_P3,J17,iTru7_305_05,ACCACGAT,iTru5_109_F,GCTAAGGA,NYU_BMS_Melanoma_13059,pool2,AP481403B02 +1,22_001_801_552_503_00,22.001.801.552.503.00,NYU_BMS_Melanoma_13059_P3,L17,iTru7_305_06,GATTACCG,iTru5_110_F,GCCAGAAT,NYU_BMS_Melanoma_13059,pool1,22_001_801_552_503_00 +1,EP372981B04,EP372981B04,NYU_BMS_Melanoma_13059_P3,N17,iTru7_305_07,GAGATACG,iTru5_111_F,TAAGTGGC,NYU_BMS_Melanoma_13059,pool2,EP372981B04 +1,EP447929B04,EP447929B04,NYU_BMS_Melanoma_13059_P3,P17,iTru7_305_08,CGACGTTA,iTru5_112_F,GCAATGAG,NYU_BMS_Melanoma_13059,pool1,EP447929B04 +1,SP573849A04,SP573849A04,NYU_BMS_Melanoma_13059_P3,B19,iTru7_305_09,GAGATGTC,iTru5_101_G,AACTGAGG,NYU_BMS_Melanoma_13059,pool2,SP573849A04 +1,SP577399A02,SP577399A02,NYU_BMS_Melanoma_13059_P3,D19,iTru7_305_10,GATTGGAG,iTru5_102_G,AAGGAAGG,NYU_BMS_Melanoma_13059,pool1,SP577399A02 +1,EP606656B03,EP606656B03,NYU_BMS_Melanoma_13059_P3,F19,iTru7_305_11,GCAATTCG,iTru5_103_G,AATGGTCG,NYU_BMS_Melanoma_13059,pool2,EP606656B03 +1,LP166715A01,LP166715A01,NYU_BMS_Melanoma_13059_P3,H19,iTru7_305_12,CGTCAATG,iTru5_104_G,ACAGCAAG,NYU_BMS_Melanoma_13059,pool1,LP166715A01 +1,AP668628B04,AP668628B04,NYU_BMS_Melanoma_13059_P3,J19,iTru7_401_01,ATGCACGA,iTru5_105_G,ACGTATGG,NYU_BMS_Melanoma_13059,pool2,AP668628B04 +1,C14,C14,NYU_BMS_Melanoma_13059_P3,L19,iTru7_401_02,ATCGCCAT,iTru5_106_G,ACTGCACT,NYU_BMS_Melanoma_13059,pool1,C14 +1,EP446610B02,EP446610B02,NYU_BMS_Melanoma_13059_P3,N19,iTru7_401_03,TCTCGCAA,iTru5_107_G,AGAGTCCA,NYU_BMS_Melanoma_13059,pool2,EP446610B02 +1,EP339061B02,EP339061B02,NYU_BMS_Melanoma_13059_P3,P19,iTru7_401_04,ACGACAGA,iTru5_108_G,AGCCTATC,NYU_BMS_Melanoma_13059,pool1,EP339061B02 +1,SP681591A04,SP681591A04,NYU_BMS_Melanoma_13059_P3,B21,iTru7_401_05,TTACGGCT,iTru5_109_G,AGGAACAC,NYU_BMS_Melanoma_13059,pool2,SP681591A04 +1,EP393712B02,EP393712B02,NYU_BMS_Melanoma_13059_P3,D21,iTru7_401_06,GAGGACTT,iTru5_110_G,AGGTCTGT,NYU_BMS_Melanoma_13059,pool1,EP393712B02 +1,EP410041B01,EP410041B01,NYU_BMS_Melanoma_13059_P3,F21,iTru7_401_07,GGCATACT,iTru5_111_G,AGTATGCC,NYU_BMS_Melanoma_13059,pool2,EP410041B01 +1,SP453872A01,SP453872A01,NYU_BMS_Melanoma_13059_P3,H21,iTru7_401_08,CGTAGGTT,iTru5_112_G,AGTTCGCA,NYU_BMS_Melanoma_13059,pool1,SP453872A01 +1,22_001_710_503_791_00,22.001.710.503.791.00,NYU_BMS_Melanoma_13059_P3,J21,iTru7_401_09,ATATGCGC,iTru5_101_H,TGGAAGCA,NYU_BMS_Melanoma_13059,pool2,22_001_710_503_791_00 +1,LP128540A01,LP128540A01,NYU_BMS_Melanoma_13059_P3,L21,iTru7_401_10,GGATGTAG,iTru5_102_H,GTCAGTCA,NYU_BMS_Melanoma_13059,pool1,LP128540A01 +1,EP339053B02,EP339053B02,NYU_BMS_Melanoma_13059_P3,N21,iTru7_401_11,CCTGTCAT,iTru5_103_H,GTAACCGA,NYU_BMS_Melanoma_13059,pool2,EP339053B02 +1,EP617443B01,EP617443B01,NYU_BMS_Melanoma_13059_P3,P21,iTru7_401_12,TGCTCATG,iTru5_104_H,GTTATGGC,NYU_BMS_Melanoma_13059,pool1,EP617443B01 +1,EP190307B01,EP190307B01,NYU_BMS_Melanoma_13059_P3,B23,iTru7_402_01,TGAAGACG,iTru5_105_H,GTAAGCAC,NYU_BMS_Melanoma_13059,pool2,EP190307B01 +1,AP795068B04,AP795068B04,NYU_BMS_Melanoma_13059_P3,D23,iTru7_402_02,GTTACGCA,iTru5_106_H,GGAATGTC,NYU_BMS_Melanoma_13059,pool1,AP795068B04 +1,LP128541A01,LP128541A01,NYU_BMS_Melanoma_13059_P3,F23,iTru7_402_03,ACTCAGAC,iTru5_107_H,GAGAAGGT,NYU_BMS_Melanoma_13059,pool2,LP128541A01 +1,EP584756B04,EP584756B04,NYU_BMS_Melanoma_13059_P3,H23,iTru7_402_04,GTCCACAT,iTru5_108_H,GAGTAGAG,NYU_BMS_Melanoma_13059,pool1,EP584756B04 +1,SP284096A02,SP284096A02,NYU_BMS_Melanoma_13059_P3,J23,iTru7_402_05,CGCTAGTA,iTru5_109_H,GCATTGGT,NYU_BMS_Melanoma_13059,pool2,SP284096A02 +1,EP431562B04,EP431562B04,NYU_BMS_Melanoma_13059_P3,L23,iTru7_402_06,GAATCCGA,iTru5_110_H,TCCAGCAA,NYU_BMS_Melanoma_13059,pool1,EP431562B04 +1,EP685640B01,EP685640B01,NYU_BMS_Melanoma_13059_P3,N23,iTru7_402_07,GAGACGAT,iTru5_111_H,GAATCCGT,NYU_BMS_Melanoma_13059,pool2,EP685640B01 +1,EP339059B02,EP339059B02,NYU_BMS_Melanoma_13059_P3,P23,iTru7_402_08,TAAGTGGC,iTru5_112_H,TACATCGG,NYU_BMS_Melanoma_13059,pool1,EP339059B02 +1,EP431575B01,EP431575B01,NYU_BMS_Melanoma_13059_P4,B2,iTru7_402_09,ACTGAGGT,iTru5_113_A,ATAACGCC,NYU_BMS_Melanoma_13059,pool2,EP431575B01 +1,EP379938B01,EP379938B01,NYU_BMS_Melanoma_13059_P4,D2,iTru7_402_10,TGTACCGT,iTru5_114_A,ATGACAGG,NYU_BMS_Melanoma_13059,pool1,EP379938B01 +1,EP529635B02,EP529635B02,NYU_BMS_Melanoma_13059_P4,F2,iTru7_402_11,AGCAAGCA,iTru5_115_A,CAACACAG,NYU_BMS_Melanoma_13059,pool2,EP529635B02 +1,EP554506B04,EP554506B04,NYU_BMS_Melanoma_13059_P4,H2,iTru7_402_12,TCTCGTGT,iTru5_116_A,CACCAGTT,NYU_BMS_Melanoma_13059,pool1,EP554506B04 +1,EP455757B04,EP455757B04,NYU_BMS_Melanoma_13059_P4,J2,iTru7_115_01,CAAGGTCT,iTru5_117_A,CAGAGTGA,NYU_BMS_Melanoma_13059,pool2,EP455757B04 +1,SP491900A02,SP491900A02,NYU_BMS_Melanoma_13059_P4,L2,iTru7_115_02,TAGACGTG,iTru5_118_A,CCGATGTA,NYU_BMS_Melanoma_13059,pool1,SP491900A02 +1,LP196272A01,LP196272A01,NYU_BMS_Melanoma_13059_P4,N2,iTru7_115_03,TGAGCTAG,iTru5_119_A,CCTTCCAT,NYU_BMS_Melanoma_13059,pool2,LP196272A01 +1,SP704319A04,SP704319A04,NYU_BMS_Melanoma_13059_P4,P2,iTru7_115_04,CTGACACA,iTru5_120_A,CGGTAATC,NYU_BMS_Melanoma_13059,pool1,SP704319A04 +1,EP617441B01,EP617441B01,NYU_BMS_Melanoma_13059_P4,B4,iTru7_115_05,ACGGTCTT,iTru5_121_A,CTAGGTTG,NYU_BMS_Melanoma_13059,pool2,EP617441B01 +1,AP687591B04,AP687591B04,NYU_BMS_Melanoma_13059_P4,D4,iTru7_115_06,GCTGTTGT,iTru5_122_A,CTCGGTAA,NYU_BMS_Melanoma_13059,pool1,AP687591B04 +1,SP640978A02,SP640978A02,NYU_BMS_Melanoma_13059_P4,F4,iTru7_115_07,CACTAGCT,iTru5_123_A,CTGTGGTA,NYU_BMS_Melanoma_13059,pool2,SP640978A02 +1,EP981129A02,EP981129A02,NYU_BMS_Melanoma_13059_P4,H4,iTru7_115_08,TGGTACAG,iTru5_124_A,GTACGATC,NYU_BMS_Melanoma_13059,pool1,EP981129A02 +1,EP455763B04,EP455763B04,NYU_BMS_Melanoma_13059_P4,J4,iTru7_115_09,AGCACTTC,iTru5_113_B,TCTGTCGT,NYU_BMS_Melanoma_13059,pool2,EP455763B04 +1,EP339057B02,EP339057B02,NYU_BMS_Melanoma_13059_P4,L4,iTru7_115_10,GCATACAG,iTru5_114_B,GAATGGCA,NYU_BMS_Melanoma_13059,pool1,EP339057B02 +1,SP491897A02,SP491897A02,NYU_BMS_Melanoma_13059_P4,N4,iTru7_115_11,CTTAGGAC,iTru5_115_B,GTGTGTTC,NYU_BMS_Melanoma_13059,pool2,SP491897A02 +1,EP980752B04,EP980752B04,NYU_BMS_Melanoma_13059_P4,P4,iTru7_211_01,GCTTCTTG,iTru5_116_B,GGTTGAAC,NYU_BMS_Melanoma_13059,pool1,EP980752B04 +1,LP128539A01,LP128539A01,NYU_BMS_Melanoma_13059_P4,B6,iTru7_101_01,ACGTTACC,iTru5_117_B,GGCTCAAT,NYU_BMS_Melanoma_13059,pool2,LP128539A01 +1,EP996831B04,EP996831B04,NYU_BMS_Melanoma_13059_P4,D6,iTru7_101_02,CTGTGTTG,iTru5_118_B,TTCGCCAT,NYU_BMS_Melanoma_13059,pool1,EP996831B04 +1,EP273332B04,EP273332B04,NYU_BMS_Melanoma_13059_P4,F6,iTru7_101_03,TGAGGTGT,iTru5_119_B,GTCCTTGA,NYU_BMS_Melanoma_13059,pool2,EP273332B04 +1,EP483291B04,EP483291B04,NYU_BMS_Melanoma_13059_P4,H6,iTru7_101_04,GATCCATG,iTru5_120_B,TAACGTCG,NYU_BMS_Melanoma_13059,pool1,EP483291B04 +1,EP393715B01,EP393715B01,NYU_BMS_Melanoma_13059_P4,J6,iTru7_101_05,GCCTATCA,iTru5_121_B,GAGACCAA,NYU_BMS_Melanoma_13059,pool2,EP393715B01 +1,EP617440B01,EP617440B01,NYU_BMS_Melanoma_13059_P4,L6,iTru7_101_06,AACAACCG,iTru5_122_B,GATCAAGG,NYU_BMS_Melanoma_13059,pool1,EP617440B01 +1,EP729434A01,EP729434A01,NYU_BMS_Melanoma_13059_P4,N6,iTru7_101_07,ACTCGTTG,iTru5_123_B,GCAACCAT,NYU_BMS_Melanoma_13059,pool2,EP729434A01 +1,SP645141A03,SP645141A03,NYU_BMS_Melanoma_13059_P4,P6,iTru7_101_08,CCTATGGT,iTru5_124_B,AAGGAGAC,NYU_BMS_Melanoma_13059,pool1,SP645141A03 +1,BLANK4_4A,BLANK4.4A,NYU_BMS_Melanoma_13059_P4,B8,iTru7_101_09,TGTACACC,iTru5_113_C,ATCGGAGA,NYU_BMS_Melanoma_13059,pool2,BLANK4.4A +1,BLANK4_4B,BLANK4.4B,NYU_BMS_Melanoma_13059_P4,D8,iTru7_101_10,GTATGCTG,iTru5_114_C,ATGCGCTT,NYU_BMS_Melanoma_13059,pool1,BLANK4.4B +1,BLANK4_4C,BLANK4.4C,NYU_BMS_Melanoma_13059_P4,F8,iTru7_101_11,TGATGTCC,iTru5_115_C,CAACCGTA,NYU_BMS_Melanoma_13059,pool2,BLANK4.4C +1,BLANK4_4D,BLANK4.4D,NYU_BMS_Melanoma_13059_P4,H8,iTru7_101_12,GTCCTTCT,iTru5_116_C,CACTTCAC,NYU_BMS_Melanoma_13059,pool1,BLANK4.4D +1,BLANK4_4E,BLANK4.4E,NYU_BMS_Melanoma_13059_P4,J8,iTru7_102_01,ATAAGGCG,iTru5_117_C,CAGCTAGA,NYU_BMS_Melanoma_13059,pool2,BLANK4.4E +1,BLANK4_4F,BLANK4.4F,NYU_BMS_Melanoma_13059_P4,L8,iTru7_102_02,CTTACCTG,iTru5_118_C,CCGTTATG,NYU_BMS_Melanoma_13059,pool1,BLANK4.4F +1,BLANK4_4G,BLANK4.4G,NYU_BMS_Melanoma_13059_P4,N8,iTru7_102_03,CGTTGCAA,iTru5_119_C,CGAACAAC,NYU_BMS_Melanoma_13059,pool2,BLANK4.4G +1,BLANK4_4H,BLANK4.4H,NYU_BMS_Melanoma_13059_P4,P8,iTru7_102_04,GATTCAGC,iTru5_120_C,CGTAGATG,NYU_BMS_Melanoma_13059,pool1,BLANK4.4H +1,SP232114A04,SP232114A04,NYU_BMS_Melanoma_13059_P4,B10,iTru7_102_05,TCACGTTC,iTru5_121_C,CTATGCCT,NYU_BMS_Melanoma_13059,pool2,SP232114A04 +1,EP393714B01,EP393714B01,NYU_BMS_Melanoma_13059_P4,D10,iTru7_102_06,TGTGCGTT,iTru5_122_C,CTGATGAG,NYU_BMS_Melanoma_13059,pool1,EP393714B01 +1,EP533388B01,EP533388B01,NYU_BMS_Melanoma_13059_P4,F10,iTru7_102_07,TAGTTGCG,iTru5_123_C,CTTCCTTC,NYU_BMS_Melanoma_13059,pool2,EP533388B01 +1,EP724905B01,EP724905B01,NYU_BMS_Melanoma_13059_P4,H10,iTru7_102_08,AAGAGCCA,iTru5_124_C,GTCTCATC,NYU_BMS_Melanoma_13059,pool1,EP724905B01 +1,EP282108B01,EP282108B01,NYU_BMS_Melanoma_13059_P4,J10,iTru7_102_09,ACAGCTCA,iTru5_113_D,GCGCATAT,NYU_BMS_Melanoma_13059,pool2,EP282108B01 +1,EP282107B01,EP282107B01,NYU_BMS_Melanoma_13059_P4,L10,iTru7_102_10,GTTAAGGC,iTru5_114_D,GAAGATCC,NYU_BMS_Melanoma_13059,pool1,EP282107B01 +1,EP001625B01,EP001625B01,NYU_BMS_Melanoma_13059_P4,N10,iTru7_102_11,AAGCCACA,iTru5_115_D,GTTGGCAT,NYU_BMS_Melanoma_13059,pool2,EP001625B01 +1,EP073209B02,EP073209B02,NYU_BMS_Melanoma_13059_P4,P10,iTru7_102_12,ACACGGTT,iTru5_116_D,GTGAATGG,NYU_BMS_Melanoma_13059,pool1,EP073209B02 +1,SP232079A01,SP232079A01,NYU_BMS_Melanoma_13059_P4,B12,iTru7_103_01,CAGCGATT,iTru5_117_D,GTATCGAG,NYU_BMS_Melanoma_13059,pool2,SP232079A01 +1,EP772145A02,EP772145A02,NYU_BMS_Melanoma_13059_P4,D12,iTru7_103_02,TAGTGACC,iTru5_118_D,TGCAAGAC,NYU_BMS_Melanoma_13059,pool1,EP772145A02 +1,AP771472A04,AP771472A04,NYU_BMS_Melanoma_13059_P4,F12,iTru7_103_03,CGAGACTA,iTru5_119_D,GAGTGTGT,NYU_BMS_Melanoma_13059,pool2,AP771472A04 +1,AP223470B01,AP223470B01,NYU_BMS_Melanoma_13059_P4,H12,iTru7_103_04,GACATGGT,iTru5_120_D,TAAGCGCA,NYU_BMS_Melanoma_13059,pool1,AP223470B01 +1,SP404412A02,SP404412A02,NYU_BMS_Melanoma_13059_P4,J12,iTru7_103_05,GCATGTCT,iTru5_121_D,TAGCAGGA,NYU_BMS_Melanoma_13059,pool2,SP404412A02 +1,EP772143A02,EP772143A02,NYU_BMS_Melanoma_13059_P4,L12,iTru7_103_06,ACTCCATC,iTru5_122_D,GACTACGA,NYU_BMS_Melanoma_13059,pool1,EP772143A02 +1,SP408629A01,SP408629A01,NYU_BMS_Melanoma_13059_P4,N12,iTru7_103_07,TGTGACTG,iTru5_123_D,GACGTCAT,NYU_BMS_Melanoma_13059,pool2,SP408629A01 +1,EP749735A07,EP749735A07,NYU_BMS_Melanoma_13059_P4,P12,iTru7_103_08,CGAAGAAC,iTru5_124_D,AAGAGGCA,NYU_BMS_Melanoma_13059,pool1,EP749735A07 +1,EP846485A01,EP846485A01,NYU_BMS_Melanoma_13059_P4,B14,iTru7_103_09,GGTGTCTT,iTru5_113_E,ATCGTCTC,NYU_BMS_Melanoma_13059,pool2,EP846485A01 +1,EP808109A01,EP808109A01,NYU_BMS_Melanoma_13059_P4,D14,iTru7_103_10,AAGAAGGC,iTru5_114_E,ATGGCGAT,NYU_BMS_Melanoma_13059,pool1,EP808109A01 +1,SP416130A04,SP416130A04,NYU_BMS_Melanoma_13059_P4,F14,iTru7_103_11,AGGTTCGA,iTru5_115_E,CAAGAAGC,NYU_BMS_Melanoma_13059,pool2,SP416130A04 +1,EP882752A01,EP882752A01,NYU_BMS_Melanoma_13059_P4,H14,iTru7_103_12,CATGTTCC,iTru5_116_E,CAGAACTG,NYU_BMS_Melanoma_13059,pool1,EP882752A01 +1,AP953594A02,AP953594A02,NYU_BMS_Melanoma_13059_P4,J14,iTru7_104_01,GTGCCATA,iTru5_117_E,CAGGTAAG,NYU_BMS_Melanoma_13059,pool2,AP953594A02 +1,AP046324B02,AP046324B02,NYU_BMS_Melanoma_13059_P4,L14,iTru7_104_02,CCTTGTAG,iTru5_118_E,CCTACCTA,NYU_BMS_Melanoma_13059,pool1,AP046324B02 +1,AP891020A04,AP891020A04,NYU_BMS_Melanoma_13059_P4,N14,iTru7_104_03,GCTGGATT,iTru5_119_E,CGAAGTCA,NYU_BMS_Melanoma_13059,pool2,AP891020A04 +1,EP790023A01,EP790023A01,NYU_BMS_Melanoma_13059_P4,P14,iTru7_104_04,TAACGAGG,iTru5_120_E,CGTCTTCA,NYU_BMS_Melanoma_13059,pool1,EP790023A01 +1,EP657386A01,EP657386A01,NYU_BMS_Melanoma_13059_P4,B16,iTru7_104_05,ATGGTTGC,iTru5_121_E,CTCAAGCT,NYU_BMS_Melanoma_13059,pool2,EP657386A01 +1,EP805337A01,EP805337A01,NYU_BMS_Melanoma_13059_P4,D16,iTru7_104_06,CCTATACC,iTru5_122_E,CTGCCATA,NYU_BMS_Melanoma_13059,pool1,EP805337A01 +1,EP927458A04,EP927458A04,NYU_BMS_Melanoma_13059_P4,F16,iTru7_104_07,TTAGGTCG,iTru5_123_E,CTTGCTAG,NYU_BMS_Melanoma_13059,pool2,EP927458A04 +1,AP173299B04,AP173299B04,NYU_BMS_Melanoma_13059_P4,H16,iTru7_104_08,GCAAGATC,iTru5_124_E,GTCTGCAA,NYU_BMS_Melanoma_13059,pool1,AP173299B04 +1,EP768164A02,EP768164A02,NYU_BMS_Melanoma_13059_P4,J16,iTru7_104_09,AGAGCCTT,iTru5_113_F,GCTACTCT,NYU_BMS_Melanoma_13059,pool2,EP768164A02 +1,EP886422A01,EP886422A01,NYU_BMS_Melanoma_13059_P4,L16,iTru7_104_10,GCAATGGA,iTru5_114_F,TACAGAGC,NYU_BMS_Melanoma_13059,pool1,EP886422A01 +1,AP103463B01,AP103463B01,NYU_BMS_Melanoma_13059_P4,N16,iTru7_104_11,CTGGAGTA,iTru5_115_F,GGTCGTAT,NYU_BMS_Melanoma_13059,pool2,AP103463B01 +1,AP744361A02,AP744361A02,NYU_BMS_Melanoma_13059_P4,P16,iTru7_104_12,GAACATCG,iTru5_116_F,GTCGTTAC,NYU_BMS_Melanoma_13059,pool1,AP744361A02 +1,AP065292B01,AP065292B01,NYU_BMS_Melanoma_13059_P4,B18,iTru7_105_01,GCACAACT,iTru5_117_F,TTCACGGA,NYU_BMS_Melanoma_13059,pool2,AP065292B01 +1,SP257517A04,SP257517A04,NYU_BMS_Melanoma_13059_P4,D18,iTru7_105_02,TTCTCTCG,iTru5_118_F,TGCTTGCT,NYU_BMS_Melanoma_13059,pool1,SP257517A04 +1,EP790021A04,EP790021A04,NYU_BMS_Melanoma_13059_P4,F18,iTru7_105_03,AACGGTCA,iTru5_119_F,TCTTACGG,NYU_BMS_Melanoma_13059,pool2,EP790021A04 +1,EP675075A04,EP675075A04,NYU_BMS_Melanoma_13059_P4,H18,iTru7_105_04,ACAGACCT,iTru5_120_F,TCCTCATG,NYU_BMS_Melanoma_13059,pool1,EP675075A04 +1,SP388683A02,SP388683A02,NYU_BMS_Melanoma_13059_P4,J18,iTru7_105_05,TCTCTTCC,iTru5_121_F,GATGTCGA,NYU_BMS_Melanoma_13059,pool2,SP388683A02 +1,SP232309A01,SP232309A01,NYU_BMS_Melanoma_13059_P4,L18,iTru7_105_06,AGTGTTGG,iTru5_122_F,GAAGTGCT,NYU_BMS_Melanoma_13059,pool1,SP232309A01 +1,EP899038A04,EP899038A04,NYU_BMS_Melanoma_13059_P4,N18,iTru7_105_07,TGGCATGT,iTru5_123_F,TCACTCGA,NYU_BMS_Melanoma_13059,pool2,EP899038A04 +1,EP636802A01,EP636802A01,NYU_BMS_Melanoma_13059_P4,P18,iTru7_105_08,AGAAGCGT,iTru5_124_F,ACGCAGTA,NYU_BMS_Melanoma_13059,pool1,EP636802A01 +1,AP046327B02,AP046327B02,NYU_BMS_Melanoma_13059_P4,B20,iTru7_105_09,AGCGGAAT,iTru5_113_G,ATCTCCTG,NYU_BMS_Melanoma_13059,pool2,AP046327B02 +1,EP905975A04,EP905975A04,NYU_BMS_Melanoma_13059_P4,D20,iTru7_105_10,TAACCGGT,iTru5_114_G,ATGTGGAC,NYU_BMS_Melanoma_13059,pool1,EP905975A04 +1,SP410796A02,SP410796A02,NYU_BMS_Melanoma_13059_P4,F20,iTru7_105_11,CATGGAAC,iTru5_115_G,CAAGCCAA,NYU_BMS_Melanoma_13059,pool2,SP410796A02 +1,EP784608A01,EP784608A01,NYU_BMS_Melanoma_13059_P4,H20,iTru7_105_12,ATGGTCCA,iTru5_116_G,CAGACGTT,NYU_BMS_Melanoma_13059,pool1,EP784608A01 +1,EP808105A01,EP808105A01,NYU_BMS_Melanoma_13059_P4,J20,iTru7_106_01,CTTCTGAG,iTru5_117_G,CATACTCG,NYU_BMS_Melanoma_13059,pool2,EP808105A01 +1,SP331134A04,SP331134A04,NYU_BMS_Melanoma_13059_P4,L20,iTru7_106_02,AACCGAAG,iTru5_118_G,CCTGTCAA,NYU_BMS_Melanoma_13059,pool1,SP331134A04 +1,EP718688A01,EP718688A01,NYU_BMS_Melanoma_13059_P4,N20,iTru7_106_03,TTCGTACC,iTru5_119_G,CGAGTTAG,NYU_BMS_Melanoma_13059,pool2,EP718688A01 +1,SP232270A02,SP232270A02,NYU_BMS_Melanoma_13059_P4,P20,iTru7_106_04,CTGTTAGG,iTru5_120_G,CTAACCTG,NYU_BMS_Melanoma_13059,pool1,SP232270A02 +1,EP970001A01,EP970001A01,NYU_BMS_Melanoma_13059_P4,B22,iTru7_106_05,CACAAGTC,iTru5_121_G,CTCCTAGT,NYU_BMS_Melanoma_13059,pool2,EP970001A01 +1,EP001624B01,EP001624B01,NYU_BMS_Melanoma_13059_P4,D22,iTru7_106_06,TCTTGACG,iTru5_122_G,CTGTACCA,NYU_BMS_Melanoma_13059,pool1,EP001624B01 +1,EP868682A01,EP868682A01,NYU_BMS_Melanoma_13059_P4,F22,iTru7_106_07,CGTCTTGT,iTru5_123_G,GCTACAAC,NYU_BMS_Melanoma_13059,pool2,EP868682A01 +1,EP927462A02,EP927462A02,NYU_BMS_Melanoma_13059_P4,H22,iTru7_106_08,CGTGATCA,iTru5_124_G,GTTCTTCG,NYU_BMS_Melanoma_13059,pool1,EP927462A02 +1,C3,C3,NYU_BMS_Melanoma_13059_P4,J22,iTru7_106_09,CCAAGTTG,iTru5_113_H,GAGAGTAC,NYU_BMS_Melanoma_13059,pool2,C3 +1,EP890158A02,EP890158A02,NYU_BMS_Melanoma_13059_P4,L22,iTru7_106_10,GTACCTTG,iTru5_114_H,GACACAGT,NYU_BMS_Melanoma_13059,pool1,EP890158A02 +1,EP023801B04,EP023801B04,NYU_BMS_Melanoma_13059_P4,N22,iTru7_106_11,GACTATGC,iTru5_115_H,TTGCTTGG,NYU_BMS_Melanoma_13059,pool2,EP023801B04 +1,EP400447B04,EP400447B04,NYU_BMS_Melanoma_13059_P4,P22,iTru7_106_12,TGGATCAC,iTru5_116_H,GTAGTACC,NYU_BMS_Melanoma_13059,pool1,EP400447B04 +1,EP385379B01,EP385379B01,NYU_BMS_Melanoma_13059_P4,B24,iTru7_107_01,CTCTGGTT,iTru5_117_H,TTCGGCTA,NYU_BMS_Melanoma_13059,pool2,EP385379B01 +1,EP385387B01,EP385387B01,NYU_BMS_Melanoma_13059_P4,D24,iTru7_107_02,GTTCATGG,iTru5_118_H,TGCACTTG,NYU_BMS_Melanoma_13059,pool1,EP385387B01 +1,EP385384B01,EP385384B01,NYU_BMS_Melanoma_13059_P4,F24,iTru7_107_03,GCTGTAAG,iTru5_119_H,TAGAACGC,NYU_BMS_Melanoma_13059,pool2,EP385384B01 +1,SP754514A04,SP754514A04,NYU_BMS_Melanoma_13059_P4,H24,iTru7_107_04,GTCGAAGA,iTru5_120_H,GATTGTCC,NYU_BMS_Melanoma_13059,pool1,SP754514A04 +1,SP415025A01,SP415025A01,NYU_BMS_Melanoma_13059_P4,J24,iTru7_107_05,GAGCTCAA,iTru5_121_H,GATGCTAC,NYU_BMS_Melanoma_13059,pool2,SP415025A01 +1,SP415023A02,SP415023A02,NYU_BMS_Melanoma_13059_P4,L24,iTru7_107_06,TGAACCTG,iTru5_122_H,GAACGGTT,NYU_BMS_Melanoma_13059,pool1,SP415023A02 +1,EP400448B04,EP400448B04,NYU_BMS_Melanoma_13059_P4,N24,iTru7_107_07,CCGACTAT,iTru5_123_H,CTCTTGTC,NYU_BMS_Melanoma_13059,pool2,EP400448B04 +1,EP479894B04,EP479894B04,NYU_BMS_Melanoma_13059_P4,P24,iTru7_107_08,AGCTAACC,iTru5_124_H,AACGCCTT,NYU_BMS_Melanoma_13059,pool1,EP479894B04 +,,,,,,,,,,, +[Bioinformatics],,,,,,,,,,, +Sample_Project,QiitaID,BarcodesAreRC,ForwardAdapter,ReverseAdapter,HumanFiltering,library_construction_protocol,experiment_design_description,,,, +NYU_BMS_Melanoma_13059,13059,FALSE,AACC,GGTT,FALSE,Nextera,Equipment,,,, +Feist_11661,11661,FALSE,AACC,GGTT,FALSE,Nextera,Equipment,,,, +Gerwick_6123,6123,FALSE,AACC,GGTT,TRUE,Nextera,Equipment,,,, +,,,,,,,,,,, +[Contact],,,,,,,,,,, +Email,Sample_Project,,,,,,,,,, +test@lol.com,Feist_11661,,,,,,,,,, +,,,,,,,,,,, +[SampleContext],,,,,,,,,,, +sample_name,sample_type,primary_qiita_study,secondary_qiita_studies,,,,,,,, +CDPH-SAL.Salmonella.Typhi.MDL-154,control blank,11661,13059,,,,,,,, \ No newline at end of file diff --git a/tests/data/good_sheet_w_replicates.csv b/tests/data/good_sheet_w_replicates.csv new file mode 100644 index 00000000..28ba68a9 --- /dev/null +++ b/tests/data/good_sheet_w_replicates.csv @@ -0,0 +1,92 @@ +[Header],,,,,,,,,,, +IEMFileVersion,4,,,,,,,,,, +SheetType,standard_metag,,,,,,,,,, +SheetVersion,100,,,,,,,,,, +Investigator Name,Knight,,,,,,,,,, +Experiment Name,RKL0042,,,,,,,,,, +Date,2020-02-26,,,,,,,,,, +Workflow,GenerateFASTQ,,,,,,,,,, +Application,FASTQ Only,,,,,,,,,, +Assay,Metagenomic,,,,,,,,,, +Description,,,,,,,,,,, +Chemistry,Default,,,,,,,,,, +,,,,,,,,,,, +[Reads],,,,,,,,,,, +150,,,,,,,,,,, +150,,,,,,,,,,, +,,,,,,,,,,, +[Settings],,,,,,,,,,, +ReverseComplement,0,,,,,,,,,, +,,,,,,,,,,, +[Data],,,,,,,,,,, +Lane,orig_name,Sample_ID,Sample_Name,source_well_384,destination_well_384,Sample_Plate,well_id_384,I7_Index_ID,index,I5_Index_ID,index2,Sample_Project,Well_description +1,BLANK.43.12G,BLANK_43_12G_A1,BLANK.43.12G.A1,A1,A1,Feist_11661_P43,A1,iTru7_114_08,CCGACTAT,iTru5_01_A,AAGGCTGA,Feist_11661,blue_quadrant +1,BLANK.43.12H,BLANK_43_12H_A3,BLANK.43.12H.A3,A3,A3,Feist_11661_P43,A3,iTru7_114_09,ACCGACAA,iTru5_02_A,CGATCGAT,Feist_11661,blue_quadrant +1,RMA.KHP.rpoS.Mage.Q97D,RMA_KHP_rpoS_Mage_Q97D_A5,RMA.KHP.rpoS.Mage.Q97D.A5,A5,A5,Feist_11661_P43,A5,iTru7_114_10,CCGACTAT,iTru5_03_A,TTACCGAG,Feist_11661,blue_quadrant +1,RMA.KHP.rpoS.Mage.Q97L,RMA_KHP_rpoS_Mage_Q97L_A7,RMA.KHP.rpoS.Mage.Q97L.A7,A7,A7,Feist_11661_P43,A7,iTru7_114_11,CTTCGCAA,iTru5_04_A,AAGACACC,Feist_11661,blue_quadrant +1,RMA.KHP.rpoS.Mage.Q97N,RMA_KHP_rpoS_Mage_Q97N_A9,RMA.KHP.rpoS.Mage.Q97N.A9,A9,A9,Feist_11661_P43,A9,iTru7_114_12,GCCTTGTT,iTru5_05_A,GTCCTAAG,Feist_11661,blue_quadrant +1,RMA.KHP.rpoS.Mage.Q97E,RMA_KHP_rpoS_Mage_Q97E_A11,RMA.KHP.rpoS.Mage.Q97E.A11,A11,A11,Feist_11661_P43,A11,iTru7_201_01,AACACCAC,iTru5_06_A,CATCTGCT,Feist_11661,blue_quadrant +1,JBI.KHP.HGL.021,JBI_KHP_HGL_021_A13,JBI.KHP.HGL.021.A13,A13,A13,Feist_11661_P43,A13,iTru7_201_02,AACTTGCC,iTru5_07_A,GAAGGTTC,Feist_11661,blue_quadrant +1,JBI.KHP.HGL.022,JBI_KHP_HGL_022_A15,JBI.KHP.HGL.022.A15,A15,A15,Feist_11661_P43,A15,iTru7_201_03,CGTATCTC,iTru5_08_A,CTCTCAGA,Feist_11661,blue_quadrant 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+1,SP464350A04,SP464350A04_C14,SP464350A04.C14,C13,C14,NYU_BMS_Melanoma_13059_P1,C14,iTru7_109_01,ATCGTCTT,iTru5_05_B,AAGAATCG,NYU_BMS_Melanoma_13059,green_quadrant +1,EP121011B01,EP121011B01_C16,EP121011B01.C16,C15,C16,NYU_BMS_Melanoma_13059_P1,C16,iTru7_109_04,ACGGTTAC,iTru5_08_B,ACCACTTC,NYU_BMS_Melanoma_13059,green_quadrant +1,BLANK.43.12G,BLANK_43_12G_B2,BLANK.43.12G.B2,A1,B2,Feist_11661_P43,B2,iTru7_114_08,AATTCGGT,iTru5_01_A,GTATTAGC,Feist_11661,yellow_quadrant +1,BLANK.43.12H,BLANK_43_12H_B4,BLANK.43.12H.B4,A3,B4,Feist_11661_P43,B4,iTru7_114_09,TCGGACTT,iTru5_02_A,CACTGAAG,Feist_11661,yellow_quadrant +1,RMA.KHP.rpoS.Mage.Q97D,RMA_KHP_rpoS_Mage_Q97D_B6,RMA.KHP.rpoS.Mage.Q97D.B6,A5,B6,Feist_11661_P43,B6,iTru7_114_10,TCGGTAAC,iTru5_03_A,AGTCGCTT,Feist_11661,yellow_quadrant +1,RMA.KHP.rpoS.Mage.Q97L,RMA_KHP_rpoS_Mage_Q97L_B8,RMA.KHP.rpoS.Mage.Q97L.B8,A7,B8,Feist_11661_P43,B8,iTru7_114_11,CATGTGTG,iTru5_04_A,CACAGGAA,Feist_11661,yellow_quadrant +1,RMA.KHP.rpoS.Mage.Q97N,RMA_KHP_rpoS_Mage_Q97N_B10,RMA.KHP.rpoS.Mage.Q97N.B10,A9,B10,Feist_11661_P43,B10,iTru7_114_12,AAGTCGAG,iTru5_05_A,TGGCACTA,Feist_11661,yellow_quadrant +1,RMA.KHP.rpoS.Mage.Q97E,RMA_KHP_rpoS_Mage_Q97E_B12,RMA.KHP.rpoS.Mage.Q97E.B12,A11,B12,Feist_11661_P43,B12,iTru7_201_01,TGCCTCAA,iTru5_06_A,CCATGAAC,Feist_11661,yellow_quadrant +1,JBI.KHP.HGL.021,JBI_KHP_HGL_021_B14,JBI.KHP.HGL.021.B14,A13,B14,Feist_11661_P43,B14,iTru7_201_02,TATCGGTC,iTru5_07_A,GGTTGTCA,Feist_11661,yellow_quadrant +1,JBI.KHP.HGL.022,JBI_KHP_HGL_022_B16,JBI.KHP.HGL.022.B16,A15,B16,Feist_11661_P43,B16,iTru7_201_03,ATCTGACC,iTru5_08_A,GCCAATAC,Feist_11661,yellow_quadrant +1,JBI.KHP.HGL.023,JBI_KHP_HGL_023_B18,JBI.KHP.HGL.023.B18,A17,B18,Feist_11661_P43,B18,iTru7_201_04,TATTCGCC,iTru5_09_A,AACCTCCT,Feist_11661,yellow_quadrant +1,JBI.KHP.HGL.024,JBI_KHP_HGL_024_B20,JBI.KHP.HGL.024.B20,A19,B20,Feist_11661_P43,B20,iTru7_201_05,CACAGACT,iTru5_10_A,AGCTACCA,Feist_11661,yellow_quadrant 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+1,EP987683A01,EP987683A01_D10,EP987683A01.D10,C9,D10,NYU_BMS_Melanoma_13059_P1,D10,iTru7_108_11,GCAAGCAA,iTru5_03_B,TGAGCTGT,NYU_BMS_Melanoma_13059,yellow_quadrant +1,AP959450A03,AP959450A03_D12,AP959450A03.D12,C11,D12,NYU_BMS_Melanoma_13059_P1,D12,iTru7_108_12,GGTTCGAG,iTru5_04_B,CGTCAAGA,NYU_BMS_Melanoma_13059,yellow_quadrant +1,SP464350A04,SP464350A04_D14,SP464350A04.D14,C13,D14,NYU_BMS_Melanoma_13059_P1,D14,iTru7_109_01,GTCGTCTT,iTru5_05_B,AAGCATCG,NYU_BMS_Melanoma_13059,yellow_quadrant +1,EP121011B01,EP121011B01_D16,EP121011B01.D16,C15,D16,NYU_BMS_Melanoma_13059_P1,D16,iTru7_109_04,GCGGTTAC,iTru5_08_B,ACCTCTTC,NYU_BMS_Melanoma_13059,yellow_quadrant,,,,,,,,,,, +[Bioinformatics],,,,,,,,,,, +Sample_Project,QiitaID,BarcodesAreRC,ForwardAdapter,ReverseAdapter,HumanFiltering,library_construction_protocol,experiment_design_description,contains_replicates,,, +Feist_11661,11661,False,AACC,GGTT,False,Nextera,Equipment,True,,, +NYU_BMS_Melanoma_13059,13059,False,AACC,GGTT,False,Knight Lab Kapa HP,Equipment,True,,, +,,,,,,,,,,, +[Contact],,,,,,,,,,, +Email,Sample_Project,,,,,,,,,, +person@domain.edu,Feist_11661,,,,,,,,,, +another_person@domain.edu,NYU_BMS_Melanoma_13059,,,,,,,,,, +,,,,,,,,,,, diff --git a/tests/data/mf-duplicate-sample.txt b/tests/data/mf-duplicate-sample.txt new file mode 100644 index 00000000..0fa0a0c1 --- /dev/null +++ b/tests/data/mf-duplicate-sample.txt @@ -0,0 +1,387 @@ +sample_name barcode center_name Barcode center_project_name experiment_design_description extraction_robot extractionkit_lot instrument_model library_construction_protocol linker mastermix_lot orig_name pcr_primers platform plating primer primer_date primer_plate processing_robot project_name qiita_prep_id run_center run_date run_prefix runid sample_plate sequencing_meth target_gene target_subfragment tm1000_8_tool tm300_8_tool tm50_8_tool water_lot well_description well_id_96 +11.1.21.RK.FH TATGCCAGAGAT UCSDMI TATGCCAGAGAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.1.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.1.21.RK.FH_C4 C4 +11.1.21.RK.LH ATCTAGTGGCAA UCSDMI ATCTAGTGGCAA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.1.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.1.21.RK.LH_D4 D4 +11.1.21.RK.FH TATGCCAGAGAT UCSDMI TATGCCAGAGAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.1.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.1.21.RK.FH_C4 C4 +11.1.21.RK.LH ATCTAGTGGCAA UCSDMI ATCTAGTGGCAA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.1.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.1.21.RK.LH_D4 D4 +11.1.21.RK.RH TTCCTTAGTAGT UCSDMI TTCCTTAGTAGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.1.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.1.21.RK.RH_B4 B4 +11.10.21.RK.FH GTGGAGTCTCAT UCSDMI GTGGAGTCTCAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.10.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.10.21.RK.FH_D1 D1 +11.10.21.RK.LH TGATGTGCTAAG UCSDMI TGATGTGCTAAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.10.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.10.21.RK.LH_E1 E1 +11.10.21.RK.RH TGACTAATGGCC UCSDMI TGACTAATGGCC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.10.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.10.21.RK.RH_C1 C1 +11.12.21.RK.FH GTAGTAGACCAT UCSDMI GTAGTAGACCAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.12.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.12.21.RK.FH_E2 E2 +11.12.21.RK.LH CCGGACAAGAAG UCSDMI CCGGACAAGAAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.12.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.12.21.RK.LH_F2 F2 +11.12.21.RK.RH ACCTTACACCTT UCSDMI ACCTTACACCTT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.12.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.12.21.RK.RH_D2 D2 +11.13.21.RK.FH CGCGCCTTAAAC UCSDMI CGCGCCTTAAAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.13.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.13.21.RK.FH_A5 A5 +11.13.21.RK.LH CGTCCGTATGAA UCSDMI CGTCCGTATGAA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.13.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.13.21.RK.LH_B5 B5 +11.13.21.RK.RH GACTCTGCTCAG UCSDMI GACTCTGCTCAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.13.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.13.21.RK.RH_H4 H4 +11.17.21.RK.FH TCCATACCGGAA UCSDMI TCCATACCGGAA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.17.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.17.21.RK.FH_A2 A2 +11.17.21.RK.LH ATGCTGCAACAC UCSDMI ATGCTGCAACAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.17.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.17.21.RK.LH_B2 B2 +11.17.21.RK.RH CGGGACACCCGA UCSDMI CGGGACACCCGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.17.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.17.21.RK.RH_C2 C2 +11.2.21.RK.FH TGTGCACGCCAT UCSDMI TGTGCACGCCAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.2.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.2.21.RK.FH_F1 F1 +11.2.21.RK.LH CTATGTATTAGT UCSDMI CTATGTATTAGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.2.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.2.21.RK.LH_H1 H1 +11.2.21.RK.RH GGTGAGCAAGCA UCSDMI GGTGAGCAAGCA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.2.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.2.21.RK.RH_G1 G1 +11.3.21.RK.FH TAAATATACCCT UCSDMI TAAATATACCCT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.3.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.3.21.RK.FH_G2 G2 +11.3.21.RK.LH ACTCCCGTGTGA UCSDMI ACTCCCGTGTGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.3.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.3.21.RK.LH_H2 H2 +11.3.21.RK.RH CCTAACGGTCCA UCSDMI CCTAACGGTCCA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.3.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.3.21.RK.RH_A4 A4 +11.4.21.RK.FH CTCGCCCTCGCC UCSDMI CTCGCCCTCGCC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.4.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.4.21.RK.FH_E4 E4 +11.4.21.RK.LH TACTAACGCGGT UCSDMI TACTAACGCGGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.4.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.4.21.RK.LH_F4 F4 +11.4.21.RK.RH GTCGTCCAAATG UCSDMI GTCGTCCAAATG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.4.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.4.21.RK.RH_G4 G4 +11.5.21.RK.FH GTCATGCTCCAG UCSDMI GTCATGCTCCAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.5.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.5.21.RK.FH_H5 H5 +11.5.21.RK.LH GCGATCACACCT UCSDMI GCGATCACACCT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.5.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.5.21.RK.LH_F5 F5 +11.5.21.RK.RH TGCACAGTCGCT UCSDMI TGCACAGTCGCT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.5.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.5.21.RK.RH_G5 G5 +11.6.21.RK.FH TATGGTACCCAG UCSDMI TATGGTACCCAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.6.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.6.21.RK.FH_A6 A6 +11.6.21.RK.LH ACGTGAGGAACG UCSDMI ACGTGAGGAACG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.6.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.6.21.RK.LH_B6 B6 +11.6.21.RK.RH AAGAACTCATGA UCSDMI AAGAACTCATGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.6.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.6.21.RK.RH_C6 C6 +11.7.21.RK.FH ACGCTTAACGAC UCSDMI ACGCTTAACGAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.7.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.7.21.RK.FH_D5 D5 +11.7.21.RK.LH CGTTTGGAATGA UCSDMI CGTTTGGAATGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.7.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.7.21.RK.LH_C5 C5 +11.7.21.RK.RH TCTCTTTCGACA UCSDMI TCTCTTTCGACA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.7.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.7.21.RK.RH_E5 E5 +11.8.21.RK.FH AGCCTTCGTCGC UCSDMI AGCCTTCGTCGC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.8.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.8.21.RK.FH_A1 A1 +11.8.21.RK.LH CGTATAAATGCG UCSDMI CGTATAAATGCG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.8.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_11.8.21.RK.LH_B1 B1 +5.1.22.RK.FH CAAATTCGGGAT UCSDMI CAAATTCGGGAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V72" GT 1331807 5.1.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.1.22.RK.FH_A4 A4 +5.1.22.RK.LH GTTAACTTACTA UCSDMI GTTAACTTACTA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V154" GT 1331807 5.1.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.1.22.RK.LH_H2 H2 +5.1.22.RK.RH CTCAGCGGGACG UCSDMI CTCAGCGGGACG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V142" GT 1331807 5.1.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.1.22.RK.RH_G2 G2 +5.10.22.RK.RH CGCGCAAGTATT UCSDMI CGCGCAAGTATT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V81" GT 1331807 5.10.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.10.22.RK.RH_B1 B1 +5.11.22.RK.FH CCTCCGTCATGG UCSDMI CCTCCGTCATGG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.11.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.11.22.RK.FH_B12 B12 +5.11.22.RK.LH AGATGTCCGTCA UCSDMI AGATGTCCGTCA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V8" GT 1331807 5.11.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.11.22.RK.LH_C12 C12 +5.11.22.RK.RH TACAGCGCATAC UCSDMI TACAGCGCATAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V67" GT 1331807 5.11.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.11.22.RK.RH_H11 H11 +5.12.22.RK.FH GTTTGAAACACG UCSDMI GTTTGAAACACG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V55" GT 1331807 5.12.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.12.22.RK.FH_G11 G11 +5.12.22.RK.LH GTCAGGTGCGGC UCSDMI GTCAGGTGCGGC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V31" GT 1331807 5.12.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.12.22.RK.LH_E11 E11 +5.12.22.RK.RH TTCCAATACTCA UCSDMI TTCCAATACTCA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V43" GT 1331807 5.12.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.12.22.RK.RH_F11 F11 +5.13.22.RK.FH GGAGAACGACAC UCSDMI GGAGAACGACAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.13.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.13.22.RK.FH_B8 B8 +5.13.22.RK.LH GGTAGTTCATAG UCSDMI GGTAGTTCATAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V63" GT 1331807 5.13.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.13.22.RK.LH_H7 H7 +5.13.22.RK.RH ACCTACTTGTCT UCSDMI ACCTACTTGTCT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.13.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.13.22.RK.RH_A8 A8 +5.14.22.RK.FH CCTCACTAGCGA UCSDMI CCTCACTAGCGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V15" GT 1331807 5.14.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.14.22.RK.FH_D7 D7 +5.14.22.RK.LH TCCACAGGGTTC UCSDMI TCCACAGGGTTC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.14.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.14.22.RK.LH_B7 B7 +5.14.22.RK.RH AGATCGTGCCTA UCSDMI AGATCGTGCCTA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.14.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.14.22.RK.RH_C7 C7 +5.15.22.RK.FH TAGTTCGGTGAC UCSDMI TAGTTCGGTGAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V27" GT 1331807 5.15.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.15.22.RK.FH_E7 E7 +5.15.22.RK.LH ACTAAAGCAAAC UCSDMI ACTAAAGCAAAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V39" GT 1331807 5.15.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.15.22.RK.LH_F7 F7 +5.15.22.RK.RH CTTGCTCATAAT UCSDMI CTTGCTCATAAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V51" GT 1331807 5.15.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.15.22.RK.RH_G7 G7 +5.16.22.RK.FH ACGACAACGGGC UCSDMI ACGACAACGGGC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V52" GT 1331807 5.16.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.16.22.RK.FH_G8 G8 +5.16.22.RK.LH TAGGAACTCACC UCSDMI TAGGAACTCACC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V40" GT 1331807 5.16.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.16.22.RK.LH_F8 F8 +5.16.22.RK.RH CGATGAATATCG UCSDMI CGATGAATATCG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V64" GT 1331807 5.16.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.16.22.RK.RH_H8 H8 +5.17.22.RK.FH TTAATGGATCGG UCSDMI TTAATGGATCGG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V28" GT 1331807 5.17.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.17.22.RK.FH_E8 E8 +5.17.22.RK.LH CTAATCAGAGTG UCSDMI CTAATCAGAGTG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V16" GT 1331807 5.17.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.17.22.RK.LH_D8 D8 +5.17.22.RK.RH AATTAATATGTA UCSDMI AATTAATATGTA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.17.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.17.22.RK.RH_C8 C8 +5.18.22.RK.FH AGCGCGGCGAAT UCSDMI AGCGCGGCGAAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V19" GT 1331807 5.18.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.18.22.RK.FH_D11 D11 +5.18.22.RK.LH GCAACGAACGAG UCSDMI GCAACGAACGAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V7" GT 1331807 5.18.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.18.22.RK.LH_C11 C11 +5.18.22.RK.RH GTTCTAAGGTGA UCSDMI GTTCTAAGGTGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V65" GT 1331807 5.18.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.18.22.RK.RH_H9 H9 +5.19.22.RK.FH CTAGCGTGCGTT UCSDMI CTAGCGTGCGTT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V53" GT 1331807 5.19.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.19.22.RK.FH_G9 G9 +5.19.22.RK.LH CATGTCTTCCAT UCSDMI CATGTCTTCCAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.19.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.19.22.RK.LH_A11 A11 +5.19.22.RK.RH TAATCCATAATC UCSDMI TAATCCATAATC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.19.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.19.22.RK.RH_B11 B11 +5.2.22.RK.FH TACGGTCTGGAT UCSDMI TACGGTCTGGAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V84" GT 1331807 5.2.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.2.22.RK.FH_B4 B4 +5.2.22.RK.LH ACGTATTCGAAG UCSDMI ACGTATTCGAAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V96" GT 1331807 5.2.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.2.22.RK.LH_C4 C4 +5.2.22.RK.RH TTACTTATCCGA UCSDMI TTACTTATCCGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V108" GT 1331807 5.2.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.2.22.RK.RH_D4 D4 +5.20.22.RK.FH TCAAGTCCGCAC UCSDMI TCAAGTCCGCAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V29" GT 1331807 5.20.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.20.22.RK.FH_E9 E9 +5.20.22.RK.LH CTACTCCACGAG UCSDMI CTACTCCACGAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V17" GT 1331807 5.20.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.20.22.RK.LH_D9 D9 +5.20.22.RK.RH GTCCGTCCTGGT UCSDMI GTCCGTCCTGGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V41" GT 1331807 5.20.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.20.22.RK.RH_F9 F9 +5.21.22.RK.FH CCTACCATTGTT UCSDMI CCTACCATTGTT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.21.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.21.22.RK.FH_B9 B9 +5.21.22.RK.LH ACTGTGACGTCC UCSDMI ACTGTGACGTCC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.21.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.21.22.RK.LH_A9 A9 +5.21.22.RK.RH CATTTCGCACTT UCSDMI CATTTCGCACTT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V5" GT 1331807 5.21.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.21.22.RK.RH_C9 C9 +5.22.22.RK.FH GGCGTAACGGCA UCSDMI GGCGTAACGGCA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V70" GT 1331807 5.22.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.22.22.RK.FH_A2 A2 +5.22.22.RK.LH GATCTAATCGAG UCSDMI GATCTAATCGAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V94" GT 1331807 5.22.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.22.22.RK.LH_C2 C2 +5.22.22.RK.RH AATACAGACCTG UCSDMI AATACAGACCTG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V82" GT 1331807 5.22.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.22.22.RK.RH_B2 B2 +5.23.22.RK.FH GATGCCTAATGA UCSDMI GATGCCTAATGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V132" GT 1331807 5.23.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.23.22.RK.FH_F4 F4 +5.23.22.RK.LH AGTTGTAGTCCG UCSDMI AGTTGTAGTCCG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V120" GT 1331807 5.23.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.23.22.RK.LH_E4 E4 +5.23.22.RK.RH TTAGTTTGTCAC UCSDMI TTAGTTTGTCAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V144" GT 1331807 5.23.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.23.22.RK.RH_G4 G4 +5.24.22.RK.FH CCGCAGCCGCAG UCSDMI CCGCAGCCGCAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V106" GT 1331807 5.24.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.24.22.RK.FH_D2 D2 +5.24.22.RK.LH GAACCGTGCAGG UCSDMI GAACCGTGCAGG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V118" GT 1331807 5.24.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.24.22.RK.LH_E2 E2 +5.24.22.RK.RH ACTAAGTACCCG UCSDMI ACTAAGTACCCG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V130" GT 1331807 5.24.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.24.22.RK.RH_F2 F2 +5.27.22.RK.FH ACGGTACCCTAC UCSDMI ACGGTACCCTAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.27.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.27.22.RK.FH_A6 A6 +5.27.22.RK.LH CGACACGGAGAA UCSDMI CGACACGGAGAA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.27.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.27.22.RK.LH_B6 B6 +5.27.22.RK.RH GCGTTTGCTAGC UCSDMI GCGTTTGCTAGC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.27.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.27.22.RK.RH_C6 C6 +5.29.22.RK.FH CGTTCTGGTGGT UCSDMI CGTTCTGGTGGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V26" GT 1331807 5.29.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.29.22.RK.FH_E6 E6 +5.29.22.RK.LH CCGGCGACAGAA UCSDMI CCGGCGACAGAA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V14" GT 1331807 5.29.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.29.22.RK.LH_D6 D6 +5.29.22.RK.RH ATCGTAGTGGTC UCSDMI ATCGTAGTGGTC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V38" GT 1331807 5.29.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.29.22.RK.RH_F6 F6 +5.3.22.RK.FH GTACGTCACTGA UCSDMI GTACGTCACTGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V133" GT 1331807 5.3.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.3.22.RK.FH_F5 F5 +5.3.22.RK.LH GCCGCCAGGGTC UCSDMI GCCGCCAGGGTC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V157" GT 1331807 5.3.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.3.22.RK.LH_H5 H5 +5.3.22.RK.RH CCGGCCGCGTGC UCSDMI CCGGCCGCGTGC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V145" GT 1331807 5.3.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.3.22.RK.RH_G5 G5 +5.30.22.RK.FH TTAAGTTAAGTT UCSDMI TTAAGTTAAGTT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V61" GT 1331807 5.30.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.30.22.RK.FH_H5 H5 +5.30.22.RK.LH TGCGGCGTCAGG UCSDMI TGCGGCGTCAGG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V49" GT 1331807 5.30.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.30.22.RK.LH_G5 G5 +5.30.22.RK.RH GCATAAACGACT UCSDMI GCATAAACGACT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V37" GT 1331807 5.30.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.30.22.RK.RH_F5 F5 +5.31.22.RK.FH CGCTGTGGATTA UCSDMI CGCTGTGGATTA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V50" GT 1331807 5.31.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.31.22.RK.FH_G6 G6 +5.31.22.RK.LH AGCCGCGGGTCC UCSDMI AGCCGCGGGTCC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V62" GT 1331807 5.31.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.31.22.RK.LH_H6 H6 +5.31.22.RK.RH TGAGTCATTGAG UCSDMI TGAGTCATTGAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.31.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.31.22.RK.RH_A7 A7 +5.4.22.RK.FH GACGTTAAGAAT UCSDMI GACGTTAAGAAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V97" GT 1331807 5.4.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.4.22.RK.FH_C5 C5 +5.4.22.RK.LH AGGGACTTCAAT UCSDMI AGGGACTTCAAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V121" GT 1331807 5.4.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.4.22.RK.LH_E5 E5 +5.4.22.RK.RH ATGGGACCTTCA UCSDMI ATGGGACCTTCA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V109" GT 1331807 5.4.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.4.22.RK.RH_D5 D5 +5.5.22.RK.FH AGGGTGACTTTA UCSDMI AGGGTGACTTTA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V156" GT 1331807 5.5.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.5.22.RK.FH_H4 H4 +5.5.22.RK.LH TTGTGTCTCCCT UCSDMI TTGTGTCTCCCT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V73" GT 1331807 5.5.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.5.22.RK.LH_A5 A5 +5.5.22.RK.RH TTCAGTTCGTTA UCSDMI TTCAGTTCGTTA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V85" GT 1331807 5.5.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.5.22.RK.RH_B5 B5 +5.6.22.RK.FH ACGGCGTTATGT UCSDMI ACGGCGTTATGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V117" GT 1331807 5.6.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.6.22.RK.FH_E1 E1 +5.6.22.RK.LH AAGGCGCTCCTT UCSDMI AAGGCGCTCCTT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V93" GT 1331807 5.6.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.6.22.RK.LH_C1 C1 +5.6.22.RK.RH CGCAATGAGGGA UCSDMI CGCAATGAGGGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V105" GT 1331807 5.6.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.6.22.RK.RH_D1 D1 +5.7.22.RK.FH GCTGCGTATACC UCSDMI GCTGCGTATACC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V141" GT 1331807 5.7.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.7.22.RK.FH_G1 G1 +5.7.22.RK.LH GAGAAGCTTATA UCSDMI GAGAAGCTTATA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V153" GT 1331807 5.7.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.7.22.RK.LH_H1 H1 +5.7.22.RK.RH CATTTGACGACG UCSDMI CATTTGACGACG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V129" GT 1331807 5.7.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.7.22.RK.RH_F1 F1 +5.8.22.RK.FH AACTCAATAGCG UCSDMI AACTCAATAGCG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V44" GT 1331807 5.8.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.8.22.RK.FH_F12 F12 +5.8.22.RK.LH TTGAACAAGCCA UCSDMI TTGAACAAGCCA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V32" GT 1331807 5.8.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.8.22.RK.LH_E12 E12 +5.8.22.RK.RH TAGCAGTTGCGT UCSDMI TAGCAGTTGCGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V20" GT 1331807 5.8.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.8.22.RK.RH_D12 D12 +5.9.22.RK.FH ACCTCAGTCAAG UCSDMI ACCTCAGTCAAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V56" GT 1331807 5.9.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.9.22.RK.FH_G12 G12 +5.9.22.RK.LH CCTCGCATGACC UCSDMI CCTCGCATGACC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V69" GT 1331807 5.9.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_5.9.22.RK.LH_A1 A1 +5.9.22.RK.RH AACAGTAAACAA UCSDMI AACAGTAAACAA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.9.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_5.9.22.RK.RH_A12 A12 +6.1.22.RK.FH GCATATGCACTG UCSDMI GCATATGCACTG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V13" GT 1331807 6.1.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.1.22.RK.FH_D5 D5 +6.1.22.RK.LH GCTGCCCACCTA UCSDMI GCTGCCCACCTA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.1.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.1.22.RK.LH_C5 C5 +6.1.22.RK.RH GTCACTCCGAAC UCSDMI GTCACTCCGAAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V25" GT 1331807 6.1.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.1.22.RK.RH_E5 E5 +6.10.22.RK.FH ACTCTTACTTAG UCSDMI ACTCTTACTTAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.10.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.10.22.RK.FH_H12 H12 +6.10.22.RK.LH TCGTTATTCAGT UCSDMI TCGTTATTCAGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V9" GT 1331807 6.10.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.10.22.RK.LH_D1 D1 +6.10.22.RK.RH TGTCAAAGTGAC UCSDMI TGTCAAAGTGAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.10.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.10.22.RK.RH_G12 G12 +6.11.22.RK.FH GTGCCGGCCGAC UCSDMI GTGCCGGCCGAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.11.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.11.22.RK.FH_B2 B2 +6.11.22.RK.LH CTTGGAGGCTTA UCSDMI CTTGGAGGCTTA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.11.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.11.22.RK.LH_A2 A2 +6.11.22.RK.RH TCATTAGCGTGG UCSDMI TCATTAGCGTGG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V57" GT 1331807 6.11.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.11.22.RK.RH_H1 H1 +6.12.22.RK.FH AGCTCTAGAAAC UCSDMI AGCTCTAGAAAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.12.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.12.22.RK.FH_C3 C3 +6.12.22.RK.LH CCTTGACCGATG UCSDMI CCTTGACCGATG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.12.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.12.22.RK.LH_B3 B3 +6.12.22.RK.RH TATCATATTACG UCSDMI TATCATATTACG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.12.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.12.22.RK.RH_A3 A3 +6.13.22.RK.FH GAACCAGTACTC UCSDMI GAACCAGTACTC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.13.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.13.22.RK.FH_H9 H9 +6.13.22.RK.LH CTTATTAAACGT UCSDMI CTTATTAAACGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.13.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.13.22.RK.LH_G9 G9 +6.13.22.RK.RH GCCTCTACGTCG UCSDMI GCCTCTACGTCG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.13.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.13.22.RK.RH_A10 A10 +6.14.22.RK.FH TTACACAAAGGC UCSDMI TTACACAAAGGC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.14.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.14.22.RK.FH_F9 F9 +6.14.22.RK.LH TGAGACCCTACA UCSDMI TGAGACCCTACA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.14.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.14.22.RK.LH_E9 E9 +6.14.22.RK.RH AATCTTGCGCCG UCSDMI AATCTTGCGCCG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.14.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.14.22.RK.RH_D9 D9 +6.15.22.RK.FH AATTCACCTCCT UCSDMI AATTCACCTCCT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.15.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.15.22.RK.FH_A12 A12 +6.15.22.RK.LH GAGATACAGTTC UCSDMI GAGATACAGTTC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.15.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.15.22.RK.LH_C12 C12 +6.15.22.RK.RH TAATCGGTGCCA UCSDMI TAATCGGTGCCA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.15.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.15.22.RK.RH_B12 B12 +6.16.22.RK.FH AGAGCCAAGAGC UCSDMI AGAGCCAAGAGC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.16.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.16.22.RK.FH_F12 F12 +6.16.22.RK.LH CACGCAGTCTAC UCSDMI CACGCAGTCTAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.16.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.16.22.RK.LH_E12 E12 +6.16.22.RK.RH TATTGCAGCAGC UCSDMI TATTGCAGCAGC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.16.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.16.22.RK.RH_D12 D12 +6.17.22.RK.FH AATAACTAGGGT UCSDMI AATAACTAGGGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.17.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.17.22.RK.FH_D11 D11 +6.17.22.RK.LH ATTACGTATCAT UCSDMI ATTACGTATCAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.17.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.17.22.RK.LH_E11 E11 +6.17.22.RK.RH GAAATCTTGAAG UCSDMI GAAATCTTGAAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.17.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.17.22.RK.RH_C11 C11 +6.18.22.RK.FH CAAGTGAAGGGA UCSDMI CAAGTGAAGGGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.18.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.18.22.RK.FH_B10 B10 +6.18.22.RK.LH CTTGATTCTTGA UCSDMI CTTGATTCTTGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.18.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.18.22.RK.LH_C10 C10 +6.18.22.RK.RH AGGATCAGGGAA UCSDMI AGGATCAGGGAA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.18.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.18.22.RK.RH_D10 D10 +6.19.22.RK.FH TATCCAAGCGCA UCSDMI TATCCAAGCGCA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.19.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.19.22.RK.FH_F11 F11 +6.19.22.RK.LH TATTTGATTGGT UCSDMI TATTTGATTGGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.19.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.19.22.RK.LH_G11 G11 +6.19.22.RK.RH GTGCCATAATCG UCSDMI GTGCCATAATCG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.19.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.19.22.RK.RH_H11 H11 +6.2.22.RK.FH ACCGAACAATCC UCSDMI ACCGAACAATCC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.2.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.2.22.RK.FH_A5 A5 +6.2.22.RK.LH CCAACCCAGATC UCSDMI CCAACCCAGATC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V60" GT 1331807 6.2.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.2.22.RK.LH_H4 H4 +6.2.22.RK.RH TCGAGAGTTTGC UCSDMI TCGAGAGTTTGC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.2.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.2.22.RK.RH_B5 B5 +6.20.22.RK.FH TCATGGCCTCCG UCSDMI TCATGGCCTCCG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V22" GT 1331807 6.20.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.20.22.RK.FH_E2 E2 +6.20.22.RK.LH AGAGGGTGATCG UCSDMI AGAGGGTGATCG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.20.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.20.22.RK.LH_C2 C2 +6.20.22.RK.RH GGATACTCGCAT UCSDMI GGATACTCGCAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V10" GT 1331807 6.20.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.20.22.RK.RH_D2 D2 +6.21.22.RK.FH ATACATGCAAGA UCSDMI ATACATGCAAGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.21.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.21.22.RK.FH_D7 D7 +6.21.22.RK.LH TGATATCGTCTT UCSDMI TGATATCGTCTT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.21.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.21.22.RK.LH_C7 C7 +6.21.22.RK.RH GGTTGCCCTGTA UCSDMI GGTTGCCCTGTA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.21.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.21.22.RK.RH_B7 B7 +6.22.22.RK.FH GGTTCATGAACA UCSDMI GGTTCATGAACA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.22.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.22.22.RK.FH_G7 G7 +6.22.22.RK.LH GTTGATACGATG UCSDMI GTTGATACGATG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.22.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.22.22.RK.LH_E7 E7 +6.22.22.RK.RH GAAGAGGGTTGA UCSDMI GAAGAGGGTTGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.22.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.22.22.RK.RH_F7 F7 +6.23.22.RK.FH AATGGTTCAGCA UCSDMI AATGGTTCAGCA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.23.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.23.22.RK.FH_H8 H8 +6.23.22.RK.LH.A TAACAATAATTC UCSDMI TAACAATAATTC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.23.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.23.22.RK.LH_G8 G8 +6.23.22.RK.LH.B GCTCGAAGATTC UCSDMI GCTCGAAGATTC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.23.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.23.22.RK.LH_G10 G10 +6.24.22.RK.FH ACGACGCATTTG UCSDMI ACGACGCATTTG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.24.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.24.22.RK.FH_F10 F10 +6.24.22.RK.RH ACTTGGTGTAAG UCSDMI ACTTGGTGTAAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.24.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.24.22.RK.RH_E10 E10 +6.25.22.RK.FH ACTACTGAGGAT UCSDMI ACTACTGAGGAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.25.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.25.22.RK.FH_A11 A11 +6.25.22.RK.LH CACGTTTATTCC UCSDMI CACGTTTATTCC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.25.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.25.22.RK.LH_B11 B11 +6.25.22.RK.RH CGCACCCATACA UCSDMI CGCACCCATACA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.25.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.25.22.RK.RH_H10 H10 +6.26.22.RK.FH CGGTGACCTACT UCSDMI CGGTGACCTACT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.26.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.26.22.RK.FH_C8 C8 +6.26.22.RK.LH CTTAGTGCAGAA UCSDMI CTTAGTGCAGAA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.26.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.26.22.RK.LH_D8 D8 +6.26.22.RK.RH.A GTCAACGCTGTC UCSDMI GTCAACGCTGTC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.26.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.26.22.RK.RH_E8 E8 +6.26.22.RK.RH.B TGAGTGGTCTGT UCSDMI TGAGTGGTCTGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.26.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.26.22.RK.RH_F8 F8 +6.27.22.RK.FH CATATAGCCCGA UCSDMI CATATAGCCCGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.27.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.27.22.RK.FH_B8 B8 +6.27.22.RK.LH TGAGTATGAGTA UCSDMI TGAGTATGAGTA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.27.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.27.22.RK.LH_H7 H7 +6.27.22.RK.RH AATTTAGGTAGG UCSDMI AATTTAGGTAGG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.27.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.27.22.RK.RH_A8 A8 +6.28.22.RK.FH TTACTGTGGCCG UCSDMI TTACTGTGGCCG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.28.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.28.22.RK.FH_G6 G6 +6.28.22.RK.LH TACGGATTATGG UCSDMI TACGGATTATGG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.28.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.28.22.RK.LH_D6 D6 +6.28.22.RK.RH ACATACTGAGCA UCSDMI ACATACTGAGCA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.28.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.28.22.RK.RH_E6 E6 +6.29.22.RK.FH GCCTATGAGATC UCSDMI GCCTATGAGATC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.29.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.29.22.RK.FH_B9 B9 +6.29.22.RK.LH GACTCAACCAGT UCSDMI GACTCAACCAGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.29.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.29.22.RK.LH_A9 A9 +6.29.22.RK.RH AATGCGCGTATA UCSDMI AATGCGCGTATA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.29.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.29.22.RK.RH_C9 C9 +6.3.22.RK.FH ATGTGCTGCTCG UCSDMI ATGTGCTGCTCG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V34" GT 1331807 6.3.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.3.22.RK.FH_F2 F2 +6.3.22.RK.LH CGCCGTACTTGC UCSDMI CGCCGTACTTGC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V58" GT 1331807 6.3.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.3.22.RK.LH_H2 H2 +6.3.22.RK.RH CCACGAGCAGGC UCSDMI CCACGAGCAGGC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V46" GT 1331807 6.3.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.3.22.RK.RH_G2 G2 +6.30.22.RK.FH TACCGAAGGTAT UCSDMI TACCGAAGGTAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.30.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.30.22.RK.FH_H6 H6 +6.30.22.RK.LH TACAATATCTGT UCSDMI TACAATATCTGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.30.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.30.22.RK.LH_A7 A7 +6.30.22.RK.RH CAAACGCACTAA UCSDMI CAAACGCACTAA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.30.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_6.30.22.RK.RH_F6 F6 +6.4.22.RK.FH CAGGAACCAGGA UCSDMI CAGGAACCAGGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V36" GT 1331807 6.4.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.4.22.RK.FH_F4 F4 +6.4.22.RK.LH CAAAGGAGCCCG UCSDMI CAAAGGAGCCCG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V48" GT 1331807 6.4.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.4.22.RK.LH_G4 G4 +6.4.22.RK.RH GTTGGACGAAGG UCSDMI GTTGGACGAAGG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V24" GT 1331807 6.4.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.4.22.RK.RH_E4 E4 +6.5.22.RK.FH CAAACTGCGTTG UCSDMI CAAACTGCGTTG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.5.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.5.22.RK.FH_B4 B4 +6.5.22.RK.LH CTGACACGAATA UCSDMI CTGACACGAATA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.5.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.5.22.RK.LH_C4 C4 +6.5.22.RK.RH AGCAGTGCGGTG UCSDMI AGCAGTGCGGTG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V12" GT 1331807 6.5.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.5.22.RK.RH_D4 D4 +6.6.22.RK.FH GCGTGCCCGGCC UCSDMI GCGTGCCCGGCC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V47" GT 1331807 6.6.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.6.22.RK.FH_G3 G3 +6.6.22.RK.LH CTATATTATCCG UCSDMI CTATATTATCCG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.6.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.6.22.RK.LH_A4 A4 +6.6.22.RK.RH TAAACCTGGACA UCSDMI TAAACCTGGACA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V59" GT 1331807 6.6.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.6.22.RK.RH_H3 H3 +6.7.22.RK.FH CAATCATAGGTG UCSDMI CAATCATAGGTG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V23" GT 1331807 6.7.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.7.22.RK.FH_E3 E3 +6.7.22.RK.LH AATGTTCAACTT UCSDMI AATGTTCAACTT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V11" GT 1331807 6.7.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.7.22.RK.LH_D3 D3 +6.7.22.RK.RH CCGATAAAGGTT UCSDMI CCGATAAAGGTT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V35" GT 1331807 6.7.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.7.22.RK.RH_F3 F3 +6.8.22.RK.FH CTACAGGGTCTC UCSDMI CTACAGGGTCTC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.8.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.8.22.RK.FH_A1 A1 +6.8.22.RK.LH TTCGATGCCGCA UCSDMI TTCGATGCCGCA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.8.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.8.22.RK.LH_C1 C1 +6.8.22.RK.RH GTTCATTAAACT UCSDMI GTTCATTAAACT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.8.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.8.22.RK.RH_B1 B1 +6.9.22.RK.FH TCAGACCAACTG UCSDMI TCAGACCAACTG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V45" GT 1331807 6.9.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.9.22.RK.FH_G1 G1 +6.9.22.RK.LH ATATGTTCTCAA UCSDMI ATATGTTCTCAA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V33" GT 1331807 6.9.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.9.22.RK.LH_F1 F1 +6.9.22.RK.RH ACTCTGTAATTA UCSDMI ACTCTGTAATTA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V21" GT 1331807 6.9.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_6.9.22.RK.RH_E1 E1 +9.1.22.RK.FH AGAATCCACCAC UCSDMI AGAATCCACCAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V116" GT 1331807 9.1.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.1.22.RK.FH_D12 D12 +9.1.22.RK.LH TGACAGAATCCA UCSDMI TGACAGAATCCA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V68" GT 1331807 9.1.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_9.1.22.RK.LH_H12 H12 +9.1.22.RK.RH TCGTTGGGACTA UCSDMI TCGTTGGGACTA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V164" GT 1331807 9.1.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.1.22.RK.RH_H12 H12 +9.10.22.RK.FH AGTGCAGGAGCC UCSDMI AGTGCAGGAGCC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V138" GT 1331807 9.10.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.10.22.RK.FH_F10 F10 +9.10.22.RK.LH AGTGTTTCGGAC UCSDMI AGTGTTTCGGAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V126" GT 1331807 9.10.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.10.22.RK.LH_E10 E10 +9.10.22.RK.RH GTTGCTGAGTCC UCSDMI GTTGCTGAGTCC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V150" GT 1331807 9.10.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.10.22.RK.RH_G10 G10 +9.11.22.RK.FH TTGCCGCTCTGG UCSDMI TTGCCGCTCTGG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V89" GT 1331807 9.11.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.11.22.RK.FH_B9 B9 +9.11.22.RK.LH CCAGGACAGGAA UCSDMI CCAGGACAGGAA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V77" GT 1331807 9.11.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.11.22.RK.LH_A9 A9 +9.11.22.RK.RH CCACAACGATCA UCSDMI CCACAACGATCA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V101" GT 1331807 9.11.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.11.22.RK.RH_C9 C9 +9.12.22.RK.FH ACACACCCTGAC UCSDMI ACACACCCTGAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V159" GT 1331807 9.12.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.12.22.RK.FH_H7 H7 +9.12.22.RK.LH AGATTCGCTCGA UCSDMI AGATTCGCTCGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V88" GT 1331807 9.12.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.12.22.RK.LH_B8 B8 +9.12.22.RK.RH AACTTTCAGGAG UCSDMI AACTTTCAGGAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V76" GT 1331807 9.12.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.12.22.RK.RH_A8 A8 +9.13.22.RK.FH CATAAGGGAGGC UCSDMI CATAAGGGAGGC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V201" GT 1331807 9.13.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.13.22.RK.FH_D1 D1 +9.13.22.RK.LH TATATAGTATCC UCSDMI TATATAGTATCC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V189" GT 1331807 9.13.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.13.22.RK.LH_C1 C1 +9.13.22.RK.RH GTGCAACCAATC UCSDMI GTGCAACCAATC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V213" GT 1331807 9.13.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.13.22.RK.RH_E1 E1 +9.14.22.RK.FH GAGCCATCTGTA UCSDMI GAGCCATCTGTA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V103" GT 1331807 9.14.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.14.22.RK.FH_C11 C11 +9.14.22.RK.LH ATTTCCGCTAAT UCSDMI ATTTCCGCTAAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V127" GT 1331807 9.14.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.14.22.RK.LH_E11 E11 +9.14.22.RK.RH TTCCACACGTGG UCSDMI TTCCACACGTGG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V115" GT 1331807 9.14.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.14.22.RK.RH_D11 D11 +9.15.22.RK.FH AAGTCACACACA UCSDMI AAGTCACACACA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V111" GT 1331807 9.15.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.15.22.RK.FH_D7 D7 +9.15.22.RK.LH CCGAGGTATAAT UCSDMI CCGAGGTATAAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V87" GT 1331807 9.15.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.15.22.RK.LH_B7 B7 +9.15.22.RK.RH TTAACAAGGCAA UCSDMI TTAACAAGGCAA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V99" GT 1331807 9.15.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.15.22.RK.RH_C7 C7 +9.16.22.RK.FH TCGCTACAGATG UCSDMI TCGCTACAGATG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V134" GT 1331807 9.16.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.16.22.RK.FH_F6 F6 +9.16.22.RK.LH CGGCCAGAAGCA UCSDMI CGGCCAGAAGCA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V122" GT 1331807 9.16.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.16.22.RK.LH_E6 E6 +9.16.22.RK.RH TCCGATAATCGG UCSDMI TCCGATAATCGG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V110" GT 1331807 9.16.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.16.22.RK.RH_D6 D6 +9.17.22.RK.FH ATTATGATTATG UCSDMI ATTATGATTATG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V146" GT 1331807 9.17.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.17.22.RK.FH_G6 G6 +9.17.22.RK.LH AACCACTAACCG UCSDMI AACCACTAACCG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V75" GT 1331807 9.17.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.17.22.RK.LH_A7 A7 +9.17.22.RK.RH GCCACCGCCGGA UCSDMI GCCACCGCCGGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V158" GT 1331807 9.17.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.17.22.RK.RH_H6 H6 +9.19.22.RK.FH CAATGTAGACAC UCSDMI CAATGTAGACAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V74" GT 1331807 9.19.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.19.22.RK.FH_A6 A6 +9.19.22.RK.LH CCGCGTCTCAAC UCSDMI CCGCGTCTCAAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V86" GT 1331807 9.19.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.19.22.RK.LH_B6 B6 +9.19.22.RK.RH TGGTGGAGTTTC UCSDMI TGGTGGAGTTTC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V98" GT 1331807 9.19.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.19.22.RK.RH_C6 C6 +9.2.22.RK.FH GCCTACTCTCGG UCSDMI GCCTACTCTCGG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V251" GT 1331807 9.2.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.2.22.RK.FH_H3 H3 +9.2.22.RK.LH CTCCGAACAACA UCSDMI CTCCGAACAACA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V168" GT 1331807 9.2.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.2.22.RK.LH_A4 A4 +9.2.22.RK.RH CCACTGCCCACC UCSDMI CCACTGCCCACC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V180" GT 1331807 9.2.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.2.22.RK.RH_B4 B4 +9.20.22.RK.FH ACACCGCACAAT UCSDMI ACACCGCACAAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V151" GT 1331807 9.20.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.20.22.RK.FH_G11 G11 +9.20.22.RK.LH CAGCCCTACCCA UCSDMI CAGCCCTACCCA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V163" GT 1331807 "9.20.22.RK,LH" FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 "ABTX_20230208_11052_Plate_240_9.20.22.RK,LH_H11" H11 +9.20.22.RK.RH GTACTCGAACCA UCSDMI GTACTCGAACCA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V139" GT 1331807 9.20.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.20.22.RK.RH_F11 F11 +9.21.22.RK.FH ATAGTCCTTTAA UCSDMI ATAGTCCTTTAA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V136" GT 1331807 9.21.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.21.22.RK.FH_F8 F8 +9.21.22.RK.LH TATAGGCTCCGC UCSDMI TATAGGCTCCGC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V160" GT 1331807 9.21.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.21.22.RK.LH_H8 H8 +9.21.22.RK.RH TCTTATAACGCT UCSDMI TCTTATAACGCT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V148" GT 1331807 9.21.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.21.22.RK.RH_G8 G8 +9.22.22.RK.FH CCGGCTTATGTG UCSDMI CCGGCTTATGTG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V135" GT 1331807 9.22.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.22.22.RK.FH_F7 F7 +9.22.22.RK.LH CGAATACTGACA UCSDMI CGAATACTGACA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V147" GT 1331807 9.22.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.22.22.RK.LH_G7 G7 +9.22.22.RK.RH TGGCAGCGAGCC UCSDMI TGGCAGCGAGCC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V123" GT 1331807 9.22.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.22.22.RK.RH_E7 E7 +9.23.22.RK.FH GAAGTAGCGAGC UCSDMI GAAGTAGCGAGC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V112" GT 1331807 9.23.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.23.22.RK.FH_D8 D8 +9.23.22.RK.LH GTGAATGTTCGA UCSDMI GTGAATGTTCGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V124" GT 1331807 9.23.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.23.22.RK.LH_E8 E8 +9.23.22.RK.RH AACCGCATAAGT UCSDMI AACCGCATAAGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V100" GT 1331807 9.23.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.23.22.RK.RH_C8 C8 +9.24.22.RK.FH GATATACCAGTG UCSDMI GATATACCAGTG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V104" GT 1331807 9.24.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.24.22.RK.FH_C12 C12 +9.24.22.RK.LH CTATCTCCTGTC UCSDMI CTATCTCCTGTC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V92" GT 1331807 9.24.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.24.22.RK.LH_B12 B12 +9.24.22.RK.RH TCCGCCTAGTCG UCSDMI TCCGCCTAGTCG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V80" GT 1331807 9.24.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.24.22.RK.RH_A12 A12 +9.25.22.RK.FH ATAGGAATAACC UCSDMI ATAGGAATAACC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V140" GT 1331807 9.25.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.25.22.RK.FH_F12 F12 +9.25.22.RK.LH CAAACCTATGGC UCSDMI CAAACCTATGGC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V128" GT 1331807 9.25.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.25.22.RK.LH_E12 E12 +9.26.22.RK.FH GTGTCGAGGGCA UCSDMI GTGTCGAGGGCA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V114" GT 1331807 9.26.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.26.22.RK.FH_D10 D10 +9.26.22.RK.LH AGTTCTCATTAA UCSDMI AGTTCTCATTAA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V102" GT 1331807 9.26.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.26.22.RK.LH_C10 C10 +9.26.22.RK.RH AGACTTCTCAGG UCSDMI AGACTTCTCAGG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V90" GT 1331807 9.26.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.26.22.RK.RH_B10 B10 +9.27.22.RK.FH GCGCGGCGTTGC UCSDMI GCGCGGCGTTGC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V78" GT 1331807 9.27.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.27.22.RK.FH_A10 A10 +9.27.22.RK.LH ATAATTGCCGAG UCSDMI ATAATTGCCGAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V161" GT 1331807 9.27.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.27.22.RK.LH_H9 H9 +9.27.22.RK.RH TAAGGTCGATAA UCSDMI TAAGGTCGATAA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V149" GT 1331807 9.27.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.27.22.RK.RH_G9 G9 +9.29.22.RK.FH CTAGAGCTCCCA UCSDMI CTAGAGCTCCCA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V249" GT 1331807 9.29.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.29.22.RK.FH_H1 H1 +9.29.22.RK.LH TACTGTACTGTT UCSDMI TACTGTACTGTT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V237" GT 1331807 9.29.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.29.22.RK.LH_G1 G1 +9.29.22.RK.RH CTCACCTAGGAA UCSDMI CTCACCTAGGAA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V225" GT 1331807 9.29.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.29.22.RK.RH_F1 F1 +9.3.22.RK.FH ACAGTTGTACGC UCSDMI ACAGTTGTACGC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V203" GT 1331807 9.3.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.3.22.RK.FH_D3 D3 +9.3.22.RK.LH ATTTACAATTGA UCSDMI ATTTACAATTGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V179" GT 1331807 9.3.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.3.22.RK.LH_B3 B3 +9.3.22.RK.RH GTCACGGACATT UCSDMI GTCACGGACATT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V191" GT 1331807 9.3.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.3.22.RK.RH_C3 C3 +9.30.22.RK.FH GTTTGGCCACAC UCSDMI GTTTGGCCACAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V177" GT 1331807 9.30.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.30.22.RK.FH_B1 B1 +9.30.22.RK.LH CACAACCACAAC UCSDMI CACAACCACAAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V152" GT 1331807 9.30.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.30.22.RK.LH_G12 G12 +9.30.22.RK.RH TAGGACGGGAGT UCSDMI TAGGACGGGAGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V165" GT 1331807 9.30.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.30.22.RK.RH_A1 A1 +9.4.22.RK.FH TTGCACCGTCGA UCSDMI TTGCACCGTCGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V167" GT 1331807 9.4.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.4.22.RK.FH_A3 A3 +9.4.22.RK.LH GGTCTTAGCACC UCSDMI GGTCTTAGCACC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V250" GT 1331807 9.4.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.4.22.RK.LH_H2 H2 +9.4.22.RK.RH TCTCGCACTGGA UCSDMI TCTCGCACTGGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V238" GT 1331807 9.4.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.4.22.RK.RH_G2 G2 +9.5.22.RK.FH ACCCAAGCGTTA UCSDMI ACCCAAGCGTTA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V214" GT 1331807 9.5.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.5.22.RK.FH_E2 E2 +9.5.22.RK.LH AGATGCAATGAT UCSDMI AGATGCAATGAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V226" GT 1331807 9.5.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.5.22.RK.LH_F2 F2 +9.5.22.RK.RH CAGGCCACTCTC UCSDMI CAGGCCACTCTC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V202" GT 1331807 9.5.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.5.22.RK.RH_D2 D2 +9.6.22.RK.FH TCTTGCGGAGTC UCSDMI TCTTGCGGAGTC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V91" GT 1331807 9.6.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.6.22.RK.FH_B11 B11 +9.6.22.RK.LH CGGAGAGACATG UCSDMI CGGAGAGACATG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V162" GT 1331807 9.6.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.6.22.RK.LH_H10 H10 +9.6.22.RK.RH GTCGCTTGCACA UCSDMI GTCGCTTGCACA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V79" GT 1331807 9.6.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.6.22.RK.RH_A11 A11 +9.7.22.RK.FH TATGTTGACGGC UCSDMI TATGTTGACGGC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V125" GT 1331807 9.7.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.7.22.RK.FH_E9 E9 +9.7.22.RK.LH TCGAGCCGATCT UCSDMI TCGAGCCGATCT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V137" GT 1331807 9.7.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.7.22.RK.LH_F9 F9 +9.7.22.RK.RH CACCATCTCCGG UCSDMI CACCATCTCCGG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V113" GT 1331807 9.7.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_9.7.22.RK.RH_D9 D9 +9.8.22.RK.FH ACTGGCAAACCT UCSDMI ACTGGCAAACCT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V215" GT 1331807 9.8.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.8.22.RK.FH_E3 E3 +9.8.22.RK.LH ACCAGTGACTCA UCSDMI ACCAGTGACTCA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V239" GT 1331807 9.8.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.8.22.RK.LH_G3 G3 +9.8.22.RK.RH GCATTCGGCGTT UCSDMI GCATTCGGCGTT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V227" GT 1331807 9.8.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.8.22.RK.RH_F3 F3 +9.9.22.RK.FH GTCCTACACAGC UCSDMI GTCCTACACAGC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V178" GT 1331807 9.9.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.9.22.RK.FH_B2 B2 +9.9.22.RK.LH AAGTCTTATCTC UCSDMI AAGTCTTATCTC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V166" GT 1331807 9.9.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.9.22.RK.LH_A2 A2 +9.9.22.RK.RH ACTGTTTACTGT UCSDMI ACTGTTTACTGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V190" GT 1331807 9.9.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_9.9.22.RK.RH_C2 C2 +BLANK.242.4C GAATATACCTGG UCSDMI GAATATACCTGG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V192" GT 1331807 BLANK.242.4C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK.242.4C_C4 C4 +BLANK238.3A AGCCCTGCTACA UCSDMI AGCCCTGCTACA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 BLANK238.3A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3A_A3 A3 +BLANK238.3B ACTCGCTCGCTG UCSDMI ACTCGCTCGCTG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 BLANK238.3B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3B_B3 B3 +BLANK238.3C CTGTCTATACTA UCSDMI CTGTCTATACTA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 BLANK238.3C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3C_C3 C3 +BLANK238.3D TAATCTCGCCGG UCSDMI TAATCTCGCCGG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 BLANK238.3D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3D_D3 D3 +BLANK238.3E AGTAAAGATCGT UCSDMI AGTAAAGATCGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 BLANK238.3E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3E_E3 E3 +BLANK238.3F TTGCTGGACGCT UCSDMI TTGCTGGACGCT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 BLANK238.3F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3F_F3 F3 +BLANK238.3G TTGCGGACCCTA UCSDMI TTGCGGACCCTA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 BLANK238.3G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3G_G3 G3 +BLANK238.3H CGGTATAGCAAT UCSDMI CGGTATAGCAAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 BLANK238.3H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3H_H3 H3 +BLANK239.10A CTCTGAGGTAAC UCSDMI CTCTGAGGTAAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 BLANK239.10A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10A_A10 A10 +BLANK239.10B TCCGGCGGGCAA UCSDMI TCCGGCGGGCAA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 BLANK239.10B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10B_B10 B10 +BLANK239.10C ACATGATATTCT UCSDMI ACATGATATTCT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V6" GT 1331807 BLANK239.10C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10C_C10 C10 +BLANK239.10D TAAGGCATCGCT UCSDMI TAAGGCATCGCT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V18" GT 1331807 BLANK239.10D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10D_D10 D10 +BLANK239.10E CACACAAAGTCA UCSDMI CACACAAAGTCA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V30" GT 1331807 BLANK239.10E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10E_E10 E10 +BLANK239.10F CGAGGCGAGTCA UCSDMI CGAGGCGAGTCA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V42" GT 1331807 BLANK239.10F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10F_F10 F10 +BLANK239.10G TAGTCTAAGGGT UCSDMI TAGTCTAAGGGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V54" GT 1331807 BLANK239.10G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10G_G10 G10 +BLANK239.10H ATGACTAAGATG UCSDMI ATGACTAAGATG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V66" GT 1331807 BLANK239.10H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10H_H10 H10 +BLANK240.3A GCGAGGAAGTCC UCSDMI GCGAGGAAGTCC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V71" GT 1331807 BLANK240.3A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3A_A3 A3 +BLANK240.3B GGACAAGTGCGA UCSDMI GGACAAGTGCGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V83" GT 1331807 BLANK240.3B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3B_B3 B3 +BLANK240.3C CTGATGTACACG UCSDMI CTGATGTACACG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V95" GT 1331807 BLANK240.3C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3C_C3 C3 +BLANK240.3D TGGAGCCTTGTC UCSDMI TGGAGCCTTGTC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V107" GT 1331807 BLANK240.3D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3D_D3 D3 +BLANK240.3E ACGTGCCTTAGA UCSDMI ACGTGCCTTAGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V119" GT 1331807 BLANK240.3E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3E_E3 E3 +BLANK240.3F CACCCTTGCGAC UCSDMI CACCCTTGCGAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V131" GT 1331807 BLANK240.3F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3F_F3 F3 +BLANK240.3G ATGCCTCGTAAG UCSDMI ATGCCTCGTAAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V143" GT 1331807 BLANK240.3G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3G_G3 G3 +BLANK240.3H GTTGTTCTGGGA UCSDMI GTTGTTCTGGGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V155" GT 1331807 BLANK240.3H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3H_H3 H3 +BLANK242.10A TGCTACAGACGT UCSDMI TGCTACAGACGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V174" GT 1331807 BLANK242.10A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10A_A10 A10 +BLANK242.10B GATCCCACGTAC UCSDMI GATCCCACGTAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V186" GT 1331807 BLANK242.10B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10B_B10 B10 +BLANK242.10C CGCTAGGATGTT UCSDMI CGCTAGGATGTT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V198" GT 1331807 BLANK242.10C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10C_C10 C10 +BLANK242.10D CTACTTACATCC UCSDMI CTACTTACATCC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V210" GT 1331807 BLANK242.10D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10D_D10 D10 +BLANK242.10E ACCACCGTAACC UCSDMI ACCACCGTAACC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V222" GT 1331807 BLANK242.10E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10E_E10 E10 +BLANK242.10F CGGTTGGCGGGT UCSDMI CGGTTGGCGGGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V234" GT 1331807 BLANK242.10F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10F_F10 F10 +BLANK242.10G CCACCGGGCCGA UCSDMI CCACCGGGCCGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V246" GT 1331807 BLANK242.10G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10G_G10 G10 +BLANK242.10H TATGTGCCGGCT UCSDMI TATGTGCCGGCT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V258" GT 1331807 BLANK242.10H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10H_H10 H10 +BLANK242.11A AGGTGAGTTCTA UCSDMI AGGTGAGTTCTA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V175" GT 1331807 BLANK242.11A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11A_A11 A11 +BLANK242.11B CCGCCAGCTTTG UCSDMI CCGCCAGCTTTG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V187" GT 1331807 BLANK242.11B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11B_B11 B11 +BLANK242.11C AGCGGTAGCGGT UCSDMI AGCGGTAGCGGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V199" GT 1331807 BLANK242.11C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11C_C11 C11 +BLANK242.11D CGCACGTACCTC UCSDMI CGCACGTACCTC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V211" GT 1331807 BLANK242.11D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11D_D11 D11 +BLANK242.11E AGGAAGTAACTT UCSDMI AGGAAGTAACTT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V223" GT 1331807 BLANK242.11E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11E_E11 E11 +BLANK242.11F CGATTCCTTAAT UCSDMI CGATTCCTTAAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V235" GT 1331807 BLANK242.11F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11F_F11 F11 +BLANK242.11G AATCCGGTCACC UCSDMI AATCCGGTCACC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V247" GT 1331807 BLANK242.11G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11G_G11 G11 +BLANK242.11H ATACCGTCTTTC UCSDMI ATACCGTCTTTC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V259" GT 1331807 BLANK242.11H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11H_H11 H11 +BLANK242.12A AACGATCATAGA UCSDMI AACGATCATAGA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V176" GT 1331807 BLANK242.12A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12A_A12 A12 +BLANK242.12B TCATCTTGATTG UCSDMI TCATCTTGATTG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V188" GT 1331807 BLANK242.12B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12B_B12 B12 +BLANK242.12C GTCAGTATGGCT UCSDMI GTCAGTATGGCT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V200" GT 1331807 BLANK242.12C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12C_C12 C12 +BLANK242.12D GTCCTCGCGACT UCSDMI GTCCTCGCGACT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V212" GT 1331807 BLANK242.12D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12D_D12 D12 +BLANK242.12E CGTTCGCTAGCC UCSDMI CGTTCGCTAGCC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V224" GT 1331807 BLANK242.12E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12E_E12 E12 +BLANK242.12F TGCCTGCTCGAC UCSDMI TGCCTGCTCGAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V236" GT 1331807 BLANK242.12F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12F_F12 F12 +BLANK242.12G TCTTACCCATAA UCSDMI TCTTACCCATAA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V248" GT 1331807 BLANK242.12G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12G_G12 G12 +BLANK242.12H TGTGCTTGTAGG UCSDMI TGTGCTTGTAGG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V260" GT 1331807 BLANK242.12H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12H_H12 H12 +BLANK242.4D ACCAGAAATGTC UCSDMI ACCAGAAATGTC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V204" GT 1331807 BLANK242.4D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.4D_D4 D4 +BLANK242.4E AACACCATCGAC UCSDMI AACACCATCGAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V216" GT 1331807 BLANK242.4E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.4E_E4 E4 +BLANK242.4F TCTACATACATA UCSDMI TCTACATACATA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V228" GT 1331807 BLANK242.4F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.4F_F4 F4 +BLANK242.4G TGGCGCACGGAC UCSDMI TGGCGCACGGAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V240" GT 1331807 BLANK242.4G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.4G_G4 G4 +BLANK242.4H ACTGCCCGATAC UCSDMI ACTGCCCGATAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V252" GT 1331807 BLANK242.4H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.4H_H4 H4 +BLANK242.5A TCTGGCTACGAC UCSDMI TCTGGCTACGAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V169" GT 1331807 BLANK242.5A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5A_A5 A5 +BLANK242.5B ATAGTTAGGGCT UCSDMI ATAGTTAGGGCT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V181" GT 1331807 BLANK242.5B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5B_B5 B5 +BLANK242.5C GAATCTGACAAC UCSDMI GAATCTGACAAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V193" GT 1331807 BLANK242.5C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5C_C5 C5 +BLANK242.5D CTCATCATGTTC UCSDMI CTCATCATGTTC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V205" GT 1331807 BLANK242.5D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5D_D5 D5 +BLANK242.5E TTATCCAGTCCT UCSDMI TTATCCAGTCCT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V217" GT 1331807 BLANK242.5E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5E_E5 E5 +BLANK242.5F GAGTCTTGGTAA UCSDMI GAGTCTTGGTAA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V229" GT 1331807 BLANK242.5F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5F_F5 F5 +BLANK242.5G CATTTACATCAC UCSDMI CATTTACATCAC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V241" GT 1331807 BLANK242.5G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5G_G5 G5 +BLANK242.5H TTCTTAACGCCT UCSDMI TTCTTAACGCCT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V253" GT 1331807 BLANK242.5H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5H_H5 H5 +BLANK242.6A AGTAGTTTCCTT UCSDMI AGTAGTTTCCTT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V170" GT 1331807 BLANK242.6A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6A_A6 A6 +BLANK242.6B GACCCGTTTCGC UCSDMI GACCCGTTTCGC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V182" GT 1331807 BLANK242.6B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6B_B6 B6 +BLANK242.6C ATTGCCTTGATT UCSDMI ATTGCCTTGATT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V194" GT 1331807 BLANK242.6C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6C_C6 C6 +BLANK242.6D TTAGGATTCTAT UCSDMI TTAGGATTCTAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V206" GT 1331807 BLANK242.6D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6D_D6 D6 +BLANK242.6E GTTTATCTTAAG UCSDMI GTTTATCTTAAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V218" GT 1331807 BLANK242.6E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6E_E6 E6 +BLANK242.6F CAGTCTAGTACG UCSDMI CAGTCTAGTACG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V230" GT 1331807 BLANK242.6F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6F_F6 F6 +BLANK242.6G GTGGGACTGCGC UCSDMI GTGGGACTGCGC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V242" GT 1331807 BLANK242.6G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6G_G6 G6 +BLANK242.6H CTCCCGAGCTCC UCSDMI CTCCCGAGCTCC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V254" GT 1331807 BLANK242.6H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6H_H6 H6 +BLANK242.7A CAGATCCCAACC UCSDMI CAGATCCCAACC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V171" GT 1331807 BLANK242.7A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7A_A7 A7 +BLANK242.7B TGACTGCGTTAG UCSDMI TGACTGCGTTAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V183" GT 1331807 BLANK242.7B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7B_B7 B7 +BLANK242.7C GAGCCCAAAGAG UCSDMI GAGCCCAAAGAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V195" GT 1331807 BLANK242.7C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7C_C7 C7 +BLANK242.7D CAACGAACCATC UCSDMI CAACGAACCATC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V207" GT 1331807 BLANK242.7D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7D_D7 D7 +BLANK242.7E GTTCGCCGCATC UCSDMI GTTCGCCGCATC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V219" GT 1331807 BLANK242.7E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7E_E7 E7 +BLANK242.7F GTTCGAGTGAAT UCSDMI GTTCGAGTGAAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V231" GT 1331807 BLANK242.7F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7F_F7 F7 +BLANK242.7G CGGCCTAAGTTC UCSDMI CGGCCTAAGTTC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V243" GT 1331807 BLANK242.7G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7G_G7 G7 +BLANK242.7H TAGACTTCAGAG UCSDMI TAGACTTCAGAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V255" GT 1331807 BLANK242.7H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7H_H7 H7 +BLANK242.8A GATAGCACTCGT UCSDMI GATAGCACTCGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V172" GT 1331807 BLANK242.8A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8A_A8 A8 +BLANK242.8B ACGTTAATATTC UCSDMI ACGTTAATATTC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V184" GT 1331807 BLANK242.8B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8B_B8 B8 +BLANK242.8C CCATGTGGCTCC UCSDMI CCATGTGGCTCC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V196" GT 1331807 BLANK242.8C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8C_C8 C8 +BLANK242.8D ACACGTTTGGGT UCSDMI ACACGTTTGGGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V208" GT 1331807 BLANK242.8D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8D_D8 D8 +BLANK242.8E AGACTATTTCAT UCSDMI AGACTATTTCAT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V220" GT 1331807 BLANK242.8E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8E_E8 E8 +BLANK242.8F AGTCCGAGTTGT UCSDMI AGTCCGAGTTGT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V232" GT 1331807 BLANK242.8F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8F_F8 F8 +BLANK242.8G GCTGAGCCTTTG UCSDMI GCTGAGCCTTTG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V244" GT 1331807 BLANK242.8G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8G_G8 G8 +BLANK242.8H ACTTAGACTCTT UCSDMI ACTTAGACTCTT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V256" GT 1331807 BLANK242.8H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8H_H8 H8 +BLANK242.9A GTAATTGTAATT UCSDMI GTAATTGTAATT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V173" GT 1331807 BLANK242.9A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9A_A9 A9 +BLANK242.9B TCTAACGAGTGC UCSDMI TCTAACGAGTGC Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V185" GT 1331807 BLANK242.9B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9B_B9 B9 +BLANK242.9C CGTTCCTTGTTA UCSDMI CGTTCCTTGTTA Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V197" GT 1331807 BLANK242.9C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9C_C9 C9 +BLANK242.9D CGTCGCAGCCTT UCSDMI CGTCGCAGCCTT Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V209" GT 1331807 BLANK242.9D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9D_D9 D9 +BLANK242.9E AGCGATTCCTCG UCSDMI AGCGATTCCTCG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V221" GT 1331807 BLANK242.9E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9E_E9 E9 +BLANK242.9F CGTGAGGACCAG UCSDMI CGTGAGGACCAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V233" GT 1331807 BLANK242.9F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9F_F9 F9 +BLANK242.9G AGAGACGCGTAG UCSDMI AGAGACGCGTAG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V245" GT 1331807 BLANK242.9G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9G_G9 G9 +BLANK242.9H GGACCTGGATGG UCSDMI GGACCTGGATGG Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V257" GT 1331807 BLANK242.9H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9H_H9 H9 diff --git a/tests/data/mf-missing-column.txt b/tests/data/mf-missing-column.txt new file mode 100644 index 00000000..9466ec62 --- /dev/null +++ b/tests/data/mf-missing-column.txt @@ -0,0 +1,385 @@ +sample_name barcode center_name center_project_name experiment_design_description extraction_robot extractionkit_lot instrument_model library_construction_protocol linker mastermix_lot orig_name pcr_primers platform plating primer primer_date primer_plate processing_robot project_name qiita_prep_id run_center run_date run_prefix runid sample_plate sequencing_meth target_gene target_subfragment tm1000_8_tool tm300_8_tool water_lot well_description well_id_96 +11.1.21.RK.FH TATGCCAGAGAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.1.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.1.21.RK.FH_C4 C4 +11.1.21.RK.LH ATCTAGTGGCAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.1.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.1.21.RK.LH_D4 D4 +11.1.21.RK.RH TTCCTTAGTAGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.1.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.1.21.RK.RH_B4 B4 +11.10.21.RK.FH GTGGAGTCTCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.10.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.10.21.RK.FH_D1 D1 +11.10.21.RK.LH TGATGTGCTAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.10.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.10.21.RK.LH_E1 E1 +11.10.21.RK.RH TGACTAATGGCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.10.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.10.21.RK.RH_C1 C1 +11.12.21.RK.FH GTAGTAGACCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.12.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.12.21.RK.FH_E2 E2 +11.12.21.RK.LH CCGGACAAGAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.12.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.12.21.RK.LH_F2 F2 +11.12.21.RK.RH ACCTTACACCTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.12.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.12.21.RK.RH_D2 D2 +11.13.21.RK.FH CGCGCCTTAAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.13.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.13.21.RK.FH_A5 A5 +11.13.21.RK.LH CGTCCGTATGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.13.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.13.21.RK.LH_B5 B5 +11.13.21.RK.RH GACTCTGCTCAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.13.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.13.21.RK.RH_H4 H4 +11.17.21.RK.FH TCCATACCGGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.17.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.17.21.RK.FH_A2 A2 +11.17.21.RK.LH ATGCTGCAACAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.17.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.17.21.RK.LH_B2 B2 +11.17.21.RK.RH CGGGACACCCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.17.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.17.21.RK.RH_C2 C2 +11.2.21.RK.FH TGTGCACGCCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.2.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.2.21.RK.FH_F1 F1 +11.2.21.RK.LH CTATGTATTAGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.2.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.2.21.RK.LH_H1 H1 +11.2.21.RK.RH GGTGAGCAAGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.2.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.2.21.RK.RH_G1 G1 +11.3.21.RK.FH TAAATATACCCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.3.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.3.21.RK.FH_G2 G2 +11.3.21.RK.LH ACTCCCGTGTGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.3.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.3.21.RK.LH_H2 H2 +11.3.21.RK.RH CCTAACGGTCCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.3.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.3.21.RK.RH_A4 A4 +11.4.21.RK.FH CTCGCCCTCGCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.4.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.4.21.RK.FH_E4 E4 +11.4.21.RK.LH TACTAACGCGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.4.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.4.21.RK.LH_F4 F4 +11.4.21.RK.RH GTCGTCCAAATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.4.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.4.21.RK.RH_G4 G4 +11.5.21.RK.FH GTCATGCTCCAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.5.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.5.21.RK.FH_H5 H5 +11.5.21.RK.LH GCGATCACACCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.5.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.5.21.RK.LH_F5 F5 +11.5.21.RK.RH TGCACAGTCGCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.5.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.5.21.RK.RH_G5 G5 +11.6.21.RK.FH TATGGTACCCAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.6.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.6.21.RK.FH_A6 A6 +11.6.21.RK.LH ACGTGAGGAACG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.6.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.6.21.RK.LH_B6 B6 +11.6.21.RK.RH AAGAACTCATGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.6.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.6.21.RK.RH_C6 C6 +11.7.21.RK.FH ACGCTTAACGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.7.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.7.21.RK.FH_D5 D5 +11.7.21.RK.LH CGTTTGGAATGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.7.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.7.21.RK.LH_C5 C5 +11.7.21.RK.RH TCTCTTTCGACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.7.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.7.21.RK.RH_E5 E5 +11.8.21.RK.FH AGCCTTCGTCGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.8.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.8.21.RK.FH_A1 A1 +11.8.21.RK.LH CGTATAAATGCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 11.8.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_11.8.21.RK.LH_B1 B1 +5.1.22.RK.FH CAAATTCGGGAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V72" GT 1331807 5.1.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.1.22.RK.FH_A4 A4 +5.1.22.RK.LH GTTAACTTACTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V154" GT 1331807 5.1.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.1.22.RK.LH_H2 H2 +5.1.22.RK.RH CTCAGCGGGACG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V142" GT 1331807 5.1.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.1.22.RK.RH_G2 G2 +5.10.22.RK.RH CGCGCAAGTATT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V81" GT 1331807 5.10.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.10.22.RK.RH_B1 B1 +5.11.22.RK.FH CCTCCGTCATGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.11.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.11.22.RK.FH_B12 B12 +5.11.22.RK.LH AGATGTCCGTCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V8" GT 1331807 5.11.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.11.22.RK.LH_C12 C12 +5.11.22.RK.RH TACAGCGCATAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V67" GT 1331807 5.11.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.11.22.RK.RH_H11 H11 +5.12.22.RK.FH GTTTGAAACACG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V55" GT 1331807 5.12.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.12.22.RK.FH_G11 G11 +5.12.22.RK.LH GTCAGGTGCGGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V31" GT 1331807 5.12.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.12.22.RK.LH_E11 E11 +5.12.22.RK.RH TTCCAATACTCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V43" GT 1331807 5.12.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.12.22.RK.RH_F11 F11 +5.13.22.RK.FH GGAGAACGACAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.13.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.13.22.RK.FH_B8 B8 +5.13.22.RK.LH GGTAGTTCATAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V63" GT 1331807 5.13.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.13.22.RK.LH_H7 H7 +5.13.22.RK.RH ACCTACTTGTCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.13.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.13.22.RK.RH_A8 A8 +5.14.22.RK.FH CCTCACTAGCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V15" GT 1331807 5.14.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.14.22.RK.FH_D7 D7 +5.14.22.RK.LH TCCACAGGGTTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.14.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.14.22.RK.LH_B7 B7 +5.14.22.RK.RH AGATCGTGCCTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.14.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.14.22.RK.RH_C7 C7 +5.15.22.RK.FH TAGTTCGGTGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V27" GT 1331807 5.15.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.15.22.RK.FH_E7 E7 +5.15.22.RK.LH ACTAAAGCAAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V39" GT 1331807 5.15.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.15.22.RK.LH_F7 F7 +5.15.22.RK.RH CTTGCTCATAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V51" GT 1331807 5.15.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.15.22.RK.RH_G7 G7 +5.16.22.RK.FH ACGACAACGGGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V52" GT 1331807 5.16.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.16.22.RK.FH_G8 G8 +5.16.22.RK.LH TAGGAACTCACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V40" GT 1331807 5.16.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.16.22.RK.LH_F8 F8 +5.16.22.RK.RH CGATGAATATCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V64" GT 1331807 5.16.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.16.22.RK.RH_H8 H8 +5.17.22.RK.FH TTAATGGATCGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V28" GT 1331807 5.17.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.17.22.RK.FH_E8 E8 +5.17.22.RK.LH CTAATCAGAGTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V16" GT 1331807 5.17.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.17.22.RK.LH_D8 D8 +5.17.22.RK.RH AATTAATATGTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.17.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.17.22.RK.RH_C8 C8 +5.18.22.RK.FH AGCGCGGCGAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V19" GT 1331807 5.18.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.18.22.RK.FH_D11 D11 +5.18.22.RK.LH GCAACGAACGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V7" GT 1331807 5.18.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.18.22.RK.LH_C11 C11 +5.18.22.RK.RH GTTCTAAGGTGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V65" GT 1331807 5.18.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.18.22.RK.RH_H9 H9 +5.19.22.RK.FH CTAGCGTGCGTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V53" GT 1331807 5.19.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.19.22.RK.FH_G9 G9 +5.19.22.RK.LH CATGTCTTCCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.19.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.19.22.RK.LH_A11 A11 +5.19.22.RK.RH TAATCCATAATC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.19.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.19.22.RK.RH_B11 B11 +5.2.22.RK.FH TACGGTCTGGAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V84" GT 1331807 5.2.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.2.22.RK.FH_B4 B4 +5.2.22.RK.LH ACGTATTCGAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V96" GT 1331807 5.2.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.2.22.RK.LH_C4 C4 +5.2.22.RK.RH TTACTTATCCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V108" GT 1331807 5.2.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.2.22.RK.RH_D4 D4 +5.20.22.RK.FH TCAAGTCCGCAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V29" GT 1331807 5.20.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.20.22.RK.FH_E9 E9 +5.20.22.RK.LH CTACTCCACGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V17" GT 1331807 5.20.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.20.22.RK.LH_D9 D9 +5.20.22.RK.RH GTCCGTCCTGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V41" GT 1331807 5.20.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.20.22.RK.RH_F9 F9 +5.21.22.RK.FH CCTACCATTGTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.21.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.21.22.RK.FH_B9 B9 +5.21.22.RK.LH ACTGTGACGTCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.21.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.21.22.RK.LH_A9 A9 +5.21.22.RK.RH CATTTCGCACTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V5" GT 1331807 5.21.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.21.22.RK.RH_C9 C9 +5.22.22.RK.FH GGCGTAACGGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V70" GT 1331807 5.22.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.22.22.RK.FH_A2 A2 +5.22.22.RK.LH GATCTAATCGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V94" GT 1331807 5.22.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.22.22.RK.LH_C2 C2 +5.22.22.RK.RH AATACAGACCTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V82" GT 1331807 5.22.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.22.22.RK.RH_B2 B2 +5.23.22.RK.FH GATGCCTAATGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V132" GT 1331807 5.23.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.23.22.RK.FH_F4 F4 +5.23.22.RK.LH AGTTGTAGTCCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V120" GT 1331807 5.23.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.23.22.RK.LH_E4 E4 +5.23.22.RK.RH TTAGTTTGTCAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V144" GT 1331807 5.23.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.23.22.RK.RH_G4 G4 +5.24.22.RK.FH CCGCAGCCGCAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V106" GT 1331807 5.24.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.24.22.RK.FH_D2 D2 +5.24.22.RK.LH GAACCGTGCAGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V118" GT 1331807 5.24.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.24.22.RK.LH_E2 E2 +5.24.22.RK.RH ACTAAGTACCCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V130" GT 1331807 5.24.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.24.22.RK.RH_F2 F2 +5.27.22.RK.FH ACGGTACCCTAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.27.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.27.22.RK.FH_A6 A6 +5.27.22.RK.LH CGACACGGAGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.27.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.27.22.RK.LH_B6 B6 +5.27.22.RK.RH GCGTTTGCTAGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.27.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.27.22.RK.RH_C6 C6 +5.29.22.RK.FH CGTTCTGGTGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V26" GT 1331807 5.29.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.29.22.RK.FH_E6 E6 +5.29.22.RK.LH CCGGCGACAGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V14" GT 1331807 5.29.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.29.22.RK.LH_D6 D6 +5.29.22.RK.RH ATCGTAGTGGTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V38" GT 1331807 5.29.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.29.22.RK.RH_F6 F6 +5.3.22.RK.FH GTACGTCACTGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V133" GT 1331807 5.3.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.3.22.RK.FH_F5 F5 +5.3.22.RK.LH GCCGCCAGGGTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V157" GT 1331807 5.3.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.3.22.RK.LH_H5 H5 +5.3.22.RK.RH CCGGCCGCGTGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V145" GT 1331807 5.3.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.3.22.RK.RH_G5 G5 +5.30.22.RK.FH TTAAGTTAAGTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V61" GT 1331807 5.30.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.30.22.RK.FH_H5 H5 +5.30.22.RK.LH TGCGGCGTCAGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V49" GT 1331807 5.30.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.30.22.RK.LH_G5 G5 +5.30.22.RK.RH GCATAAACGACT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V37" GT 1331807 5.30.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.30.22.RK.RH_F5 F5 +5.31.22.RK.FH CGCTGTGGATTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V50" GT 1331807 5.31.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.31.22.RK.FH_G6 G6 +5.31.22.RK.LH AGCCGCGGGTCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V62" GT 1331807 5.31.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.31.22.RK.LH_H6 H6 +5.31.22.RK.RH TGAGTCATTGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.31.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.31.22.RK.RH_A7 A7 +5.4.22.RK.FH GACGTTAAGAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V97" GT 1331807 5.4.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.4.22.RK.FH_C5 C5 +5.4.22.RK.LH AGGGACTTCAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V121" GT 1331807 5.4.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.4.22.RK.LH_E5 E5 +5.4.22.RK.RH ATGGGACCTTCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V109" GT 1331807 5.4.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.4.22.RK.RH_D5 D5 +5.5.22.RK.FH AGGGTGACTTTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V156" GT 1331807 5.5.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.5.22.RK.FH_H4 H4 +5.5.22.RK.LH TTGTGTCTCCCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V73" GT 1331807 5.5.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.5.22.RK.LH_A5 A5 +5.5.22.RK.RH TTCAGTTCGTTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V85" GT 1331807 5.5.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.5.22.RK.RH_B5 B5 +5.6.22.RK.FH ACGGCGTTATGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V117" GT 1331807 5.6.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.6.22.RK.FH_E1 E1 +5.6.22.RK.LH AAGGCGCTCCTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V93" GT 1331807 5.6.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.6.22.RK.LH_C1 C1 +5.6.22.RK.RH CGCAATGAGGGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V105" GT 1331807 5.6.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.6.22.RK.RH_D1 D1 +5.7.22.RK.FH GCTGCGTATACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V141" GT 1331807 5.7.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.7.22.RK.FH_G1 G1 +5.7.22.RK.LH GAGAAGCTTATA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V153" GT 1331807 5.7.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.7.22.RK.LH_H1 H1 +5.7.22.RK.RH CATTTGACGACG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V129" GT 1331807 5.7.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.7.22.RK.RH_F1 F1 +5.8.22.RK.FH AACTCAATAGCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V44" GT 1331807 5.8.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.8.22.RK.FH_F12 F12 +5.8.22.RK.LH TTGAACAAGCCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V32" GT 1331807 5.8.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.8.22.RK.LH_E12 E12 +5.8.22.RK.RH TAGCAGTTGCGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V20" GT 1331807 5.8.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.8.22.RK.RH_D12 D12 +5.9.22.RK.FH ACCTCAGTCAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V56" GT 1331807 5.9.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.9.22.RK.FH_G12 G12 +5.9.22.RK.LH CCTCGCATGACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V69" GT 1331807 5.9.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_5.9.22.RK.LH_A1 A1 +5.9.22.RK.RH AACAGTAAACAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 5.9.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_5.9.22.RK.RH_A12 A12 +6.1.22.RK.FH GCATATGCACTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V13" GT 1331807 6.1.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.1.22.RK.FH_D5 D5 +6.1.22.RK.LH GCTGCCCACCTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.1.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.1.22.RK.LH_C5 C5 +6.1.22.RK.RH GTCACTCCGAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V25" GT 1331807 6.1.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.1.22.RK.RH_E5 E5 +6.10.22.RK.FH ACTCTTACTTAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.10.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.10.22.RK.FH_H12 H12 +6.10.22.RK.LH TCGTTATTCAGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V9" GT 1331807 6.10.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.10.22.RK.LH_D1 D1 +6.10.22.RK.RH TGTCAAAGTGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.10.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.10.22.RK.RH_G12 G12 +6.11.22.RK.FH GTGCCGGCCGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.11.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.11.22.RK.FH_B2 B2 +6.11.22.RK.LH CTTGGAGGCTTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.11.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.11.22.RK.LH_A2 A2 +6.11.22.RK.RH TCATTAGCGTGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V57" GT 1331807 6.11.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.11.22.RK.RH_H1 H1 +6.12.22.RK.FH AGCTCTAGAAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.12.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.12.22.RK.FH_C3 C3 +6.12.22.RK.LH CCTTGACCGATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.12.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.12.22.RK.LH_B3 B3 +6.12.22.RK.RH TATCATATTACG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.12.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.12.22.RK.RH_A3 A3 +6.13.22.RK.FH GAACCAGTACTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.13.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.13.22.RK.FH_H9 H9 +6.13.22.RK.LH CTTATTAAACGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.13.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.13.22.RK.LH_G9 G9 +6.13.22.RK.RH GCCTCTACGTCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.13.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.13.22.RK.RH_A10 A10 +6.14.22.RK.FH TTACACAAAGGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.14.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.14.22.RK.FH_F9 F9 +6.14.22.RK.LH TGAGACCCTACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.14.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.14.22.RK.LH_E9 E9 +6.14.22.RK.RH AATCTTGCGCCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.14.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.14.22.RK.RH_D9 D9 +6.15.22.RK.FH AATTCACCTCCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.15.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.15.22.RK.FH_A12 A12 +6.15.22.RK.LH GAGATACAGTTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.15.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.15.22.RK.LH_C12 C12 +6.15.22.RK.RH TAATCGGTGCCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.15.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.15.22.RK.RH_B12 B12 +6.16.22.RK.FH AGAGCCAAGAGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.16.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.16.22.RK.FH_F12 F12 +6.16.22.RK.LH CACGCAGTCTAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.16.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.16.22.RK.LH_E12 E12 +6.16.22.RK.RH TATTGCAGCAGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.16.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.16.22.RK.RH_D12 D12 +6.17.22.RK.FH AATAACTAGGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.17.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.17.22.RK.FH_D11 D11 +6.17.22.RK.LH ATTACGTATCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.17.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.17.22.RK.LH_E11 E11 +6.17.22.RK.RH GAAATCTTGAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.17.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.17.22.RK.RH_C11 C11 +6.18.22.RK.FH CAAGTGAAGGGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.18.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.18.22.RK.FH_B10 B10 +6.18.22.RK.LH CTTGATTCTTGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.18.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.18.22.RK.LH_C10 C10 +6.18.22.RK.RH AGGATCAGGGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.18.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.18.22.RK.RH_D10 D10 +6.19.22.RK.FH TATCCAAGCGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.19.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.19.22.RK.FH_F11 F11 +6.19.22.RK.LH TATTTGATTGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.19.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.19.22.RK.LH_G11 G11 +6.19.22.RK.RH GTGCCATAATCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.19.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.19.22.RK.RH_H11 H11 +6.2.22.RK.FH ACCGAACAATCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.2.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.2.22.RK.FH_A5 A5 +6.2.22.RK.LH CCAACCCAGATC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V60" GT 1331807 6.2.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.2.22.RK.LH_H4 H4 +6.2.22.RK.RH TCGAGAGTTTGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.2.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.2.22.RK.RH_B5 B5 +6.20.22.RK.FH TCATGGCCTCCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V22" GT 1331807 6.20.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.20.22.RK.FH_E2 E2 +6.20.22.RK.LH AGAGGGTGATCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.20.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.20.22.RK.LH_C2 C2 +6.20.22.RK.RH GGATACTCGCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V10" GT 1331807 6.20.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.20.22.RK.RH_D2 D2 +6.21.22.RK.FH ATACATGCAAGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.21.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.21.22.RK.FH_D7 D7 +6.21.22.RK.LH TGATATCGTCTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.21.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.21.22.RK.LH_C7 C7 +6.21.22.RK.RH GGTTGCCCTGTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.21.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.21.22.RK.RH_B7 B7 +6.22.22.RK.FH GGTTCATGAACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.22.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.22.22.RK.FH_G7 G7 +6.22.22.RK.LH GTTGATACGATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.22.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.22.22.RK.LH_E7 E7 +6.22.22.RK.RH GAAGAGGGTTGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.22.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.22.22.RK.RH_F7 F7 +6.23.22.RK.FH AATGGTTCAGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.23.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.23.22.RK.FH_H8 H8 +6.23.22.RK.LH.A TAACAATAATTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.23.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.23.22.RK.LH_G8 G8 +6.23.22.RK.LH.B GCTCGAAGATTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.23.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.23.22.RK.LH_G10 G10 +6.24.22.RK.FH ACGACGCATTTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.24.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.24.22.RK.FH_F10 F10 +6.24.22.RK.RH ACTTGGTGTAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.24.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.24.22.RK.RH_E10 E10 +6.25.22.RK.FH ACTACTGAGGAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.25.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.25.22.RK.FH_A11 A11 +6.25.22.RK.LH CACGTTTATTCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.25.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.25.22.RK.LH_B11 B11 +6.25.22.RK.RH CGCACCCATACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.25.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.25.22.RK.RH_H10 H10 +6.26.22.RK.FH CGGTGACCTACT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.26.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.26.22.RK.FH_C8 C8 +6.26.22.RK.LH CTTAGTGCAGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.26.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.26.22.RK.LH_D8 D8 +6.26.22.RK.RH.A GTCAACGCTGTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.26.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.26.22.RK.RH_E8 E8 +6.26.22.RK.RH.B TGAGTGGTCTGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.26.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.26.22.RK.RH_F8 F8 +6.27.22.RK.FH CATATAGCCCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.27.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.27.22.RK.FH_B8 B8 +6.27.22.RK.LH TGAGTATGAGTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.27.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.27.22.RK.LH_H7 H7 +6.27.22.RK.RH AATTTAGGTAGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.27.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.27.22.RK.RH_A8 A8 +6.28.22.RK.FH TTACTGTGGCCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.28.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.28.22.RK.FH_G6 G6 +6.28.22.RK.LH TACGGATTATGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.28.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.28.22.RK.LH_D6 D6 +6.28.22.RK.RH ACATACTGAGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.28.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.28.22.RK.RH_E6 E6 +6.29.22.RK.FH GCCTATGAGATC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.29.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.29.22.RK.FH_B9 B9 +6.29.22.RK.LH GACTCAACCAGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.29.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.29.22.RK.LH_A9 A9 +6.29.22.RK.RH AATGCGCGTATA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.29.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.29.22.RK.RH_C9 C9 +6.3.22.RK.FH ATGTGCTGCTCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V34" GT 1331807 6.3.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.3.22.RK.FH_F2 F2 +6.3.22.RK.LH CGCCGTACTTGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V58" GT 1331807 6.3.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.3.22.RK.LH_H2 H2 +6.3.22.RK.RH CCACGAGCAGGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V46" GT 1331807 6.3.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.3.22.RK.RH_G2 G2 +6.30.22.RK.FH TACCGAAGGTAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.30.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.30.22.RK.FH_H6 H6 +6.30.22.RK.LH TACAATATCTGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.30.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.30.22.RK.LH_A7 A7 +6.30.22.RK.RH CAAACGCACTAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.30.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_6.30.22.RK.RH_F6 F6 +6.4.22.RK.FH CAGGAACCAGGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V36" GT 1331807 6.4.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.4.22.RK.FH_F4 F4 +6.4.22.RK.LH CAAAGGAGCCCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V48" GT 1331807 6.4.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.4.22.RK.LH_G4 G4 +6.4.22.RK.RH GTTGGACGAAGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V24" GT 1331807 6.4.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.4.22.RK.RH_E4 E4 +6.5.22.RK.FH CAAACTGCGTTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.5.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.5.22.RK.FH_B4 B4 +6.5.22.RK.LH CTGACACGAATA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.5.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.5.22.RK.LH_C4 C4 +6.5.22.RK.RH AGCAGTGCGGTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V12" GT 1331807 6.5.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.5.22.RK.RH_D4 D4 +6.6.22.RK.FH GCGTGCCCGGCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V47" GT 1331807 6.6.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.6.22.RK.FH_G3 G3 +6.6.22.RK.LH CTATATTATCCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.6.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.6.22.RK.LH_A4 A4 +6.6.22.RK.RH TAAACCTGGACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V59" GT 1331807 6.6.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.6.22.RK.RH_H3 H3 +6.7.22.RK.FH CAATCATAGGTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V23" GT 1331807 6.7.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.7.22.RK.FH_E3 E3 +6.7.22.RK.LH AATGTTCAACTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V11" GT 1331807 6.7.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.7.22.RK.LH_D3 D3 +6.7.22.RK.RH CCGATAAAGGTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V35" GT 1331807 6.7.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.7.22.RK.RH_F3 F3 +6.8.22.RK.FH CTACAGGGTCTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.8.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.8.22.RK.FH_A1 A1 +6.8.22.RK.LH TTCGATGCCGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.8.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.8.22.RK.LH_C1 C1 +6.8.22.RK.RH GTTCATTAAACT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 6.8.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.8.22.RK.RH_B1 B1 +6.9.22.RK.FH TCAGACCAACTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V45" GT 1331807 6.9.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.9.22.RK.FH_G1 G1 +6.9.22.RK.LH ATATGTTCTCAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V33" GT 1331807 6.9.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.9.22.RK.LH_F1 F1 +6.9.22.RK.RH ACTCTGTAATTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V21" GT 1331807 6.9.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_6.9.22.RK.RH_E1 E1 +9.1.22.RK.FH AGAATCCACCAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V116" GT 1331807 9.1.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.1.22.RK.FH_D12 D12 +9.1.22.RK.LH TGACAGAATCCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V68" GT 1331807 9.1.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_9.1.22.RK.LH_H12 H12 +9.1.22.RK.RH TCGTTGGGACTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V164" GT 1331807 9.1.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.1.22.RK.RH_H12 H12 +9.10.22.RK.FH AGTGCAGGAGCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V138" GT 1331807 9.10.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.10.22.RK.FH_F10 F10 +9.10.22.RK.LH AGTGTTTCGGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V126" GT 1331807 9.10.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.10.22.RK.LH_E10 E10 +9.10.22.RK.RH GTTGCTGAGTCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V150" GT 1331807 9.10.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.10.22.RK.RH_G10 G10 +9.11.22.RK.FH TTGCCGCTCTGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V89" GT 1331807 9.11.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.11.22.RK.FH_B9 B9 +9.11.22.RK.LH CCAGGACAGGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V77" GT 1331807 9.11.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.11.22.RK.LH_A9 A9 +9.11.22.RK.RH CCACAACGATCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V101" GT 1331807 9.11.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.11.22.RK.RH_C9 C9 +9.12.22.RK.FH ACACACCCTGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V159" GT 1331807 9.12.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.12.22.RK.FH_H7 H7 +9.12.22.RK.LH AGATTCGCTCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V88" GT 1331807 9.12.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.12.22.RK.LH_B8 B8 +9.12.22.RK.RH AACTTTCAGGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V76" GT 1331807 9.12.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.12.22.RK.RH_A8 A8 +9.13.22.RK.FH CATAAGGGAGGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V201" GT 1331807 9.13.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.13.22.RK.FH_D1 D1 +9.13.22.RK.LH TATATAGTATCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V189" GT 1331807 9.13.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.13.22.RK.LH_C1 C1 +9.13.22.RK.RH GTGCAACCAATC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V213" GT 1331807 9.13.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.13.22.RK.RH_E1 E1 +9.14.22.RK.FH GAGCCATCTGTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V103" GT 1331807 9.14.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.14.22.RK.FH_C11 C11 +9.14.22.RK.LH ATTTCCGCTAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V127" GT 1331807 9.14.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.14.22.RK.LH_E11 E11 +9.14.22.RK.RH TTCCACACGTGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V115" GT 1331807 9.14.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.14.22.RK.RH_D11 D11 +9.15.22.RK.FH AAGTCACACACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V111" GT 1331807 9.15.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.15.22.RK.FH_D7 D7 +9.15.22.RK.LH CCGAGGTATAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V87" GT 1331807 9.15.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.15.22.RK.LH_B7 B7 +9.15.22.RK.RH TTAACAAGGCAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V99" GT 1331807 9.15.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.15.22.RK.RH_C7 C7 +9.16.22.RK.FH TCGCTACAGATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V134" GT 1331807 9.16.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.16.22.RK.FH_F6 F6 +9.16.22.RK.LH CGGCCAGAAGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V122" GT 1331807 9.16.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.16.22.RK.LH_E6 E6 +9.16.22.RK.RH TCCGATAATCGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V110" GT 1331807 9.16.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.16.22.RK.RH_D6 D6 +9.17.22.RK.FH ATTATGATTATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V146" GT 1331807 9.17.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.17.22.RK.FH_G6 G6 +9.17.22.RK.LH AACCACTAACCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V75" GT 1331807 9.17.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.17.22.RK.LH_A7 A7 +9.17.22.RK.RH GCCACCGCCGGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V158" GT 1331807 9.17.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.17.22.RK.RH_H6 H6 +9.19.22.RK.FH CAATGTAGACAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V74" GT 1331807 9.19.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.19.22.RK.FH_A6 A6 +9.19.22.RK.LH CCGCGTCTCAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V86" GT 1331807 9.19.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.19.22.RK.LH_B6 B6 +9.19.22.RK.RH TGGTGGAGTTTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V98" GT 1331807 9.19.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.19.22.RK.RH_C6 C6 +9.2.22.RK.FH GCCTACTCTCGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V251" GT 1331807 9.2.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.2.22.RK.FH_H3 H3 +9.2.22.RK.LH CTCCGAACAACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V168" GT 1331807 9.2.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.2.22.RK.LH_A4 A4 +9.2.22.RK.RH CCACTGCCCACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V180" GT 1331807 9.2.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.2.22.RK.RH_B4 B4 +9.20.22.RK.FH ACACCGCACAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V151" GT 1331807 9.20.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.20.22.RK.FH_G11 G11 +9.20.22.RK.LH CAGCCCTACCCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V163" GT 1331807 "9.20.22.RK,LH" FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 "ABTX_20230208_11052_Plate_240_9.20.22.RK,LH_H11" H11 +9.20.22.RK.RH GTACTCGAACCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V139" GT 1331807 9.20.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.20.22.RK.RH_F11 F11 +9.21.22.RK.FH ATAGTCCTTTAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V136" GT 1331807 9.21.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.21.22.RK.FH_F8 F8 +9.21.22.RK.LH TATAGGCTCCGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V160" GT 1331807 9.21.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.21.22.RK.LH_H8 H8 +9.21.22.RK.RH TCTTATAACGCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V148" GT 1331807 9.21.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.21.22.RK.RH_G8 G8 +9.22.22.RK.FH CCGGCTTATGTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V135" GT 1331807 9.22.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.22.22.RK.FH_F7 F7 +9.22.22.RK.LH CGAATACTGACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V147" GT 1331807 9.22.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.22.22.RK.LH_G7 G7 +9.22.22.RK.RH TGGCAGCGAGCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V123" GT 1331807 9.22.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.22.22.RK.RH_E7 E7 +9.23.22.RK.FH GAAGTAGCGAGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V112" GT 1331807 9.23.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.23.22.RK.FH_D8 D8 +9.23.22.RK.LH GTGAATGTTCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V124" GT 1331807 9.23.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.23.22.RK.LH_E8 E8 +9.23.22.RK.RH AACCGCATAAGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V100" GT 1331807 9.23.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.23.22.RK.RH_C8 C8 +9.24.22.RK.FH GATATACCAGTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V104" GT 1331807 9.24.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.24.22.RK.FH_C12 C12 +9.24.22.RK.LH CTATCTCCTGTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V92" GT 1331807 9.24.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.24.22.RK.LH_B12 B12 +9.24.22.RK.RH TCCGCCTAGTCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V80" GT 1331807 9.24.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.24.22.RK.RH_A12 A12 +9.25.22.RK.FH ATAGGAATAACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V140" GT 1331807 9.25.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.25.22.RK.FH_F12 F12 +9.25.22.RK.LH CAAACCTATGGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V128" GT 1331807 9.25.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.25.22.RK.LH_E12 E12 +9.26.22.RK.FH GTGTCGAGGGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V114" GT 1331807 9.26.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.26.22.RK.FH_D10 D10 +9.26.22.RK.LH AGTTCTCATTAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V102" GT 1331807 9.26.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.26.22.RK.LH_C10 C10 +9.26.22.RK.RH AGACTTCTCAGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V90" GT 1331807 9.26.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.26.22.RK.RH_B10 B10 +9.27.22.RK.FH GCGCGGCGTTGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V78" GT 1331807 9.27.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.27.22.RK.FH_A10 A10 +9.27.22.RK.LH ATAATTGCCGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V161" GT 1331807 9.27.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.27.22.RK.LH_H9 H9 +9.27.22.RK.RH TAAGGTCGATAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V149" GT 1331807 9.27.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.27.22.RK.RH_G9 G9 +9.29.22.RK.FH CTAGAGCTCCCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V249" GT 1331807 9.29.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.29.22.RK.FH_H1 H1 +9.29.22.RK.LH TACTGTACTGTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V237" GT 1331807 9.29.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.29.22.RK.LH_G1 G1 +9.29.22.RK.RH CTCACCTAGGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V225" GT 1331807 9.29.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.29.22.RK.RH_F1 F1 +9.3.22.RK.FH ACAGTTGTACGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V203" GT 1331807 9.3.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.3.22.RK.FH_D3 D3 +9.3.22.RK.LH ATTTACAATTGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V179" GT 1331807 9.3.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.3.22.RK.LH_B3 B3 +9.3.22.RK.RH GTCACGGACATT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V191" GT 1331807 9.3.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.3.22.RK.RH_C3 C3 +9.30.22.RK.FH GTTTGGCCACAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V177" GT 1331807 9.30.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.30.22.RK.FH_B1 B1 +9.30.22.RK.LH CACAACCACAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V152" GT 1331807 9.30.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.30.22.RK.LH_G12 G12 +9.30.22.RK.RH TAGGACGGGAGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V165" GT 1331807 9.30.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.30.22.RK.RH_A1 A1 +9.4.22.RK.FH TTGCACCGTCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V167" GT 1331807 9.4.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.4.22.RK.FH_A3 A3 +9.4.22.RK.LH GGTCTTAGCACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V250" GT 1331807 9.4.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.4.22.RK.LH_H2 H2 +9.4.22.RK.RH TCTCGCACTGGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V238" GT 1331807 9.4.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.4.22.RK.RH_G2 G2 +9.5.22.RK.FH ACCCAAGCGTTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V214" GT 1331807 9.5.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.5.22.RK.FH_E2 E2 +9.5.22.RK.LH AGATGCAATGAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V226" GT 1331807 9.5.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.5.22.RK.LH_F2 F2 +9.5.22.RK.RH CAGGCCACTCTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V202" GT 1331807 9.5.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.5.22.RK.RH_D2 D2 +9.6.22.RK.FH TCTTGCGGAGTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V91" GT 1331807 9.6.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.6.22.RK.FH_B11 B11 +9.6.22.RK.LH CGGAGAGACATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V162" GT 1331807 9.6.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.6.22.RK.LH_H10 H10 +9.6.22.RK.RH GTCGCTTGCACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V79" GT 1331807 9.6.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.6.22.RK.RH_A11 A11 +9.7.22.RK.FH TATGTTGACGGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V125" GT 1331807 9.7.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.7.22.RK.FH_E9 E9 +9.7.22.RK.LH TCGAGCCGATCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V137" GT 1331807 9.7.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.7.22.RK.LH_F9 F9 +9.7.22.RK.RH CACCATCTCCGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V113" GT 1331807 9.7.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_9.7.22.RK.RH_D9 D9 +9.8.22.RK.FH ACTGGCAAACCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V215" GT 1331807 9.8.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.8.22.RK.FH_E3 E3 +9.8.22.RK.LH ACCAGTGACTCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V239" GT 1331807 9.8.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.8.22.RK.LH_G3 G3 +9.8.22.RK.RH GCATTCGGCGTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V227" GT 1331807 9.8.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.8.22.RK.RH_F3 F3 +9.9.22.RK.FH GTCCTACACAGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V178" GT 1331807 9.9.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.9.22.RK.FH_B2 B2 +9.9.22.RK.LH AAGTCTTATCTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V166" GT 1331807 9.9.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.9.22.RK.LH_A2 A2 +9.9.22.RK.RH ACTGTTTACTGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V190" GT 1331807 9.9.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_9.9.22.RK.RH_C2 C2 +BLANK.242.4C GAATATACCTGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V192" GT 1331807 BLANK.242.4C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK.242.4C_C4 C4 +BLANK238.3A AGCCCTGCTACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 BLANK238.3A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3A_A3 A3 +BLANK238.3B ACTCGCTCGCTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 BLANK238.3B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3B_B3 B3 +BLANK238.3C CTGTCTATACTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 BLANK238.3C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3C_C3 C3 +BLANK238.3D TAATCTCGCCGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 BLANK238.3D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3D_D3 D3 +BLANK238.3E AGTAAAGATCGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 BLANK238.3E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3E_E3 E3 +BLANK238.3F TTGCTGGACGCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 BLANK238.3F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3F_F3 F3 +BLANK238.3G TTGCGGACCCTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 BLANK238.3G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3G_G3 G3 +BLANK238.3H CGGTATAGCAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 BLANK238.3H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_238_BLANK238.3H_H3 H3 +BLANK239.10A CTCTGAGGTAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 BLANK239.10A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10A_A10 A10 +BLANK239.10B TCCGGCGGGCAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT 1331807 BLANK239.10B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10B_B10 B10 +BLANK239.10C ACATGATATTCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V6" GT 1331807 BLANK239.10C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10C_C10 C10 +BLANK239.10D TAAGGCATCGCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V18" GT 1331807 BLANK239.10D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10D_D10 D10 +BLANK239.10E CACACAAAGTCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V30" GT 1331807 BLANK239.10E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10E_E10 E10 +BLANK239.10F CGAGGCGAGTCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V42" GT 1331807 BLANK239.10F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10F_F10 F10 +BLANK239.10G TAGTCTAAGGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V54" GT 1331807 BLANK239.10G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10G_G10 G10 +BLANK239.10H ATGACTAAGATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V66" GT 1331807 BLANK239.10H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_239_BLANK239.10H_H10 H10 +BLANK240.3A GCGAGGAAGTCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V71" GT 1331807 BLANK240.3A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3A_A3 A3 +BLANK240.3B GGACAAGTGCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V83" GT 1331807 BLANK240.3B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3B_B3 B3 +BLANK240.3C CTGATGTACACG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V95" GT 1331807 BLANK240.3C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3C_C3 C3 +BLANK240.3D TGGAGCCTTGTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V107" GT 1331807 BLANK240.3D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3D_D3 D3 +BLANK240.3E ACGTGCCTTAGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V119" GT 1331807 BLANK240.3E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3E_E3 E3 +BLANK240.3F CACCCTTGCGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V131" GT 1331807 BLANK240.3F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3F_F3 F3 +BLANK240.3G ATGCCTCGTAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V143" GT 1331807 BLANK240.3G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3G_G3 G3 +BLANK240.3H GTTGTTCTGGGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V155" GT 1331807 BLANK240.3H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_240_BLANK240.3H_H3 H3 +BLANK242.10A TGCTACAGACGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V174" GT 1331807 BLANK242.10A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10A_A10 A10 +BLANK242.10B GATCCCACGTAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V186" GT 1331807 BLANK242.10B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10B_B10 B10 +BLANK242.10C CGCTAGGATGTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V198" GT 1331807 BLANK242.10C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10C_C10 C10 +BLANK242.10D CTACTTACATCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V210" GT 1331807 BLANK242.10D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10D_D10 D10 +BLANK242.10E ACCACCGTAACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V222" GT 1331807 BLANK242.10E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10E_E10 E10 +BLANK242.10F CGGTTGGCGGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V234" GT 1331807 BLANK242.10F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10F_F10 F10 +BLANK242.10G CCACCGGGCCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V246" GT 1331807 BLANK242.10G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10G_G10 G10 +BLANK242.10H TATGTGCCGGCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V258" GT 1331807 BLANK242.10H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.10H_H10 H10 +BLANK242.11A AGGTGAGTTCTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V175" GT 1331807 BLANK242.11A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11A_A11 A11 +BLANK242.11B CCGCCAGCTTTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V187" GT 1331807 BLANK242.11B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11B_B11 B11 +BLANK242.11C AGCGGTAGCGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V199" GT 1331807 BLANK242.11C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11C_C11 C11 +BLANK242.11D CGCACGTACCTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V211" GT 1331807 BLANK242.11D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11D_D11 D11 +BLANK242.11E AGGAAGTAACTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V223" GT 1331807 BLANK242.11E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11E_E11 E11 +BLANK242.11F CGATTCCTTAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V235" GT 1331807 BLANK242.11F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11F_F11 F11 +BLANK242.11G AATCCGGTCACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V247" GT 1331807 BLANK242.11G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11G_G11 G11 +BLANK242.11H ATACCGTCTTTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V259" GT 1331807 BLANK242.11H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.11H_H11 H11 +BLANK242.12A AACGATCATAGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V176" GT 1331807 BLANK242.12A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12A_A12 A12 +BLANK242.12B TCATCTTGATTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V188" GT 1331807 BLANK242.12B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12B_B12 B12 +BLANK242.12C GTCAGTATGGCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V200" GT 1331807 BLANK242.12C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12C_C12 C12 +BLANK242.12D GTCCTCGCGACT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V212" GT 1331807 BLANK242.12D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12D_D12 D12 +BLANK242.12E CGTTCGCTAGCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V224" GT 1331807 BLANK242.12E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12E_E12 E12 +BLANK242.12F TGCCTGCTCGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V236" GT 1331807 BLANK242.12F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12F_F12 F12 +BLANK242.12G TCTTACCCATAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V248" GT 1331807 BLANK242.12G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12G_G12 G12 +BLANK242.12H TGTGCTTGTAGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V260" GT 1331807 BLANK242.12H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.12H_H12 H12 +BLANK242.4D ACCAGAAATGTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V204" GT 1331807 BLANK242.4D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.4D_D4 D4 +BLANK242.4E AACACCATCGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V216" GT 1331807 BLANK242.4E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.4E_E4 E4 +BLANK242.4F TCTACATACATA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V228" GT 1331807 BLANK242.4F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.4F_F4 F4 +BLANK242.4G TGGCGCACGGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V240" GT 1331807 BLANK242.4G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.4G_G4 G4 +BLANK242.4H ACTGCCCGATAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V252" GT 1331807 BLANK242.4H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.4H_H4 H4 +BLANK242.5A TCTGGCTACGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V169" GT 1331807 BLANK242.5A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5A_A5 A5 +BLANK242.5B ATAGTTAGGGCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V181" GT 1331807 BLANK242.5B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5B_B5 B5 +BLANK242.5C GAATCTGACAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V193" GT 1331807 BLANK242.5C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5C_C5 C5 +BLANK242.5D CTCATCATGTTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V205" GT 1331807 BLANK242.5D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5D_D5 D5 +BLANK242.5E TTATCCAGTCCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V217" GT 1331807 BLANK242.5E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5E_E5 E5 +BLANK242.5F GAGTCTTGGTAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V229" GT 1331807 BLANK242.5F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5F_F5 F5 +BLANK242.5G CATTTACATCAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V241" GT 1331807 BLANK242.5G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5G_G5 G5 +BLANK242.5H TTCTTAACGCCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V253" GT 1331807 BLANK242.5H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.5H_H5 H5 +BLANK242.6A AGTAGTTTCCTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V170" GT 1331807 BLANK242.6A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6A_A6 A6 +BLANK242.6B GACCCGTTTCGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V182" GT 1331807 BLANK242.6B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6B_B6 B6 +BLANK242.6C ATTGCCTTGATT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V194" GT 1331807 BLANK242.6C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6C_C6 C6 +BLANK242.6D TTAGGATTCTAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V206" GT 1331807 BLANK242.6D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6D_D6 D6 +BLANK242.6E GTTTATCTTAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V218" GT 1331807 BLANK242.6E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6E_E6 E6 +BLANK242.6F CAGTCTAGTACG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V230" GT 1331807 BLANK242.6F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6F_F6 F6 +BLANK242.6G GTGGGACTGCGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V242" GT 1331807 BLANK242.6G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6G_G6 G6 +BLANK242.6H CTCCCGAGCTCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V254" GT 1331807 BLANK242.6H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.6H_H6 H6 +BLANK242.7A CAGATCCCAACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V171" GT 1331807 BLANK242.7A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7A_A7 A7 +BLANK242.7B TGACTGCGTTAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V183" GT 1331807 BLANK242.7B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7B_B7 B7 +BLANK242.7C GAGCCCAAAGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V195" GT 1331807 BLANK242.7C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7C_C7 C7 +BLANK242.7D CAACGAACCATC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V207" GT 1331807 BLANK242.7D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7D_D7 D7 +BLANK242.7E GTTCGCCGCATC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V219" GT 1331807 BLANK242.7E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7E_E7 E7 +BLANK242.7F GTTCGAGTGAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V231" GT 1331807 BLANK242.7F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7F_F7 F7 +BLANK242.7G CGGCCTAAGTTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V243" GT 1331807 BLANK242.7G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7G_G7 G7 +BLANK242.7H TAGACTTCAGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V255" GT 1331807 BLANK242.7H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.7H_H7 H7 +BLANK242.8A GATAGCACTCGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V172" GT 1331807 BLANK242.8A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8A_A8 A8 +BLANK242.8B ACGTTAATATTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V184" GT 1331807 BLANK242.8B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8B_B8 B8 +BLANK242.8C CCATGTGGCTCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V196" GT 1331807 BLANK242.8C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8C_C8 C8 +BLANK242.8D ACACGTTTGGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V208" GT 1331807 BLANK242.8D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8D_D8 D8 +BLANK242.8E AGACTATTTCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V220" GT 1331807 BLANK242.8E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8E_E8 E8 +BLANK242.8F AGTCCGAGTTGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V232" GT 1331807 BLANK242.8F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8F_F8 F8 +BLANK242.8G GCTGAGCCTTTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V244" GT 1331807 BLANK242.8G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8G_G8 G8 +BLANK242.8H ACTTAGACTCTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V256" GT 1331807 BLANK242.8H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.8H_H8 H8 +BLANK242.9A GTAATTGTAATT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V173" GT 1331807 BLANK242.9A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9A_A9 A9 +BLANK242.9B TCTAACGAGTGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V185" GT 1331807 BLANK242.9B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9B_B9 B9 +BLANK242.9C CGTTCCTTGTTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V197" GT 1331807 BLANK242.9C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9C_C9 C9 +BLANK242.9D CGTCGCAGCCTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V209" GT 1331807 BLANK242.9D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9D_D9 D9 +BLANK242.9E AGCGATTCCTCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V221" GT 1331807 BLANK242.9E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9E_E9 E9 +BLANK242.9F CGTGAGGACCAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V233" GT 1331807 BLANK242.9F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9F_F9 F9 +BLANK242.9G AGAGACGCGTAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V245" GT 1331807 BLANK242.9G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9G_G9 G9 +BLANK242.9H GGACCTGGATGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V257" GT 1331807 BLANK242.9H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 ABTX_20230208_ABTX_11052 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_11052_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA 1317793 ABTX_20230208_11052_Plate_242_BLANK242.9H_H9 H9 diff --git a/tests/data/mgv90_test_sheet.csv b/tests/data/mgv90_test_sheet.csv new file mode 100644 index 00000000..ded82519 --- /dev/null +++ b/tests/data/mgv90_test_sheet.csv @@ -0,0 +1,40 @@ +[Header],,,,,,,,,, +IEMFileVersion,4,,,,,,,,, +SheetType,standard_metag,,,,,,,,, +SheetVersion,90,,,,,,,,, +Investigator Name,Caballero,,,,,,,,, +Experiment Name,RKL0042,,,,,,,,, +Date,2/26/20,,,,,,,,, +Workflow,GenerateFASTQ,,,,,,,,, +Application,FASTQ Only,,,,,,,,, +Assay,Metagenomic,,,,,,,,, +Description,,,,,,,,,, +Chemistry,Default,,,,,,,,, +,,,,,,,,,, +[Reads],,,,,,,,,, +150,,,,,,,,,, +150,,,,,,,,,, +,,,,,,,,,, +[Settings],,,,,,,,,, +ReverseComplement,0,,,,,,,,, +,,,,,,,,,, +[Data],,,,,,,,,, +Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,I5_Index_ID,index2,Sample_Project,Well_description +1,sample1,sample1,FooBar_666_p1,A1,iTru7_107_07,CCGACTAT,iTru5_01_A,ACCGACAA,Project_1111,s1 +1,sample2,sample2,FooBar_666_p1,A2,iTru7_107_08,CCGACTAT,iTru5_01_A,CTTCGCAA,Project_1111,s2 +3,sample1,sample1,FooBar_666_p1,A3,iTru7_107_09,GCCTTGTT,iTru5_01_A,AACACCAC,Project_1111,s1 +3,sample2,sample2,FooBar_666_p1,A4,iTru7_107_10,AACTTGCC,iTru5_01_A,CGTATCTC,Project_1111,s2 +3,sample3,sample3,FooBar_666_p1,A5,iTru7_107_11,CAATGTGG,iTru5_01_A,GGTACGAA,Trojecp_666,s5 +3,sample4,sample4,FooBar_666_p1,B6,iTru7_107_12,AAGGCTGA,iTru5_01_A,CGATCGAT,Trojecp_666,s6 +3,sample5,sample5,FooBar_666_p1,B8,iTru7_107_13,TTACCGAG,iTru5_01_A,AAGACACC,Trojecp_666,s7 +,,,,,,,,,, +[Bioinformatics],,,,,,,,,, +Sample_Project,QiitaID,BarcodesAreRC,ForwardAdapter,ReverseAdapter,HumanFiltering,library_construction_protocol,experiment_design_description,,, +Project_1111,1111,False,AACC,GGTT,False,Knight Lab Kapa HP,Eqiiperiment,,, +Trojecp_666,666,False,AACC,GGTT,False,Knight Lab Kapa HP,SomethingWitty,,, +,,,,,,,,,, +[Contact],,,,,,,,,, +Email,Sample_Project,,,,,,,,, +test@lol.com,Project_1111,,,,,,,,, +tester@rofl.com,Trojecp_666,,,,,,,,, +,,,,,,,,,, diff --git a/tests/data/multi-project-sheet.csv b/tests/data/multi-project-sheet.csv new file mode 100644 index 00000000..10b41110 --- /dev/null +++ b/tests/data/multi-project-sheet.csv @@ -0,0 +1,39 @@ +[Header],,,,,,,,,,, +IEMFileVersion,4,,,,,,,,,, +SheetType,standard_metag,,,,,,,,,, +SheetVersion,100,,,,,,,,,, +Investigator Name,Knight,,,,,,,,,, +Experiment Name,RKL0042,,,,,,,,,, +Date,2020-02-26,,,,,,,,,, +Workflow,GenerateFASTQ,,,,,,,,,, +Application,FASTQ Only,,,,,,,,,, +Assay,Metagenomic,,,,,,,,,, +Description,,,,,,,,,,, +Chemistry,Default,,,,,,,,,, +,,,,,,,,,,, +[Reads],,,,,,,,,,, +150,,,,,,,,,,, +150,,,,,,,,,,, +,,,,,,,,,,, +[Settings],,,,,,,,,,, +ReverseComplement,0,,,,,,,,,, +,,,,,,,,,,, +[Data],,,,,,,,,,, +Lane,Sample_ID,Sample_Name,Sample_Plate,well_id_384,I7_Index_ID,index,I5_Index_ID,index2,Sample_Project,syndna_pool_number,Well_description +1,3A,3A,Something,I23,iTru7_201_03,GATAGGCT,iTru5_09_H,AGAAGGAC,Wisconsin_U19_15445,pool1,3A +1,4A,4A,Something,K23,iTru7_201_04,TTGACAGG,iTru5_10_H,TGACCGTT,Wisconsin_U19_15445,pool1,4A +1,5B,5B,Something,I24,iTru7_209_03,CCTGATTG,iTru5_21_H,GCCTTCTT,Wisconsin_U19_15445,pool1,5B +1,6A,6A,Something,K24,iTru7_209_04,TTGTGTGC,iTru5_22_H,TGGACCAT,Wisconsin_U19_NA_15446,pool1,6A +1,7A,7A,Something,J23,iTru7_402_03,ACTCAGAC,iTru5_109_H,GCATTGGT,Wisconsin_U19_NA_15446,pool1,7A +1,8A,8A,Something,L23,iTru7_402_04,GTCCACAT,iTru5_110_H,TCCAGCAA,Wisconsin_U19_NA_15446,pool1,8A +,,,,,,,,,,, +[Bioinformatics],,,,,,,,,,, +Sample_Project,QiitaID,BarcodesAreRC,ForwardAdapter,ReverseAdapter,HumanFiltering,library_construction_protocol,experiment_design_description,,,, +Wisconsin_U19_15445,15445,False,AACC,GGTT,True,Nextera,Equipment,,,, +Wisconsin_U19_NA_15446,15446,False,AACC,GGTT,True,Nextera,Equipment,,,, +,,,,,,,,,,, +[Contact],,,,,,,,,,, +Email,Sample_Project,,,,,,,,,, +test@lol.com,Wisconsin_U19_15445,,,,,,,,,, +test@lol.com,Wisconsin_U19_NA_15446,,,,,,,,,, +,,,,,,,,,,, diff --git a/tests/data/multiqc-bclconvert-config.yaml b/tests/data/multiqc-bclconvert-config.yaml new file mode 100644 index 00000000..8a9ce440 --- /dev/null +++ b/tests/data/multiqc-bclconvert-config.yaml @@ -0,0 +1,87 @@ +title: "Sequence processing summaries" +output_fn_name: "index.html" +show_analysis_paths: False +show_analysis_time: False + +run_modules: + - bclconvert + - fastqc + - fastp + +# including BLANKs in reports is now default operation for the pipeline +sample_names_ignore: +# - "blank*" +# - "BLANK*" + +# This can optionally be set to True. When version-checking is enabled, +# a message will appear in stdout as well as in the log-file. If these are not +# reviewed then the effort will be wasted. Note FastQCJob calls multiqc +# multiple times, once for each project specified in the sample-sheet. +no_version_check: False + +# How to plot graphs. Different templates can override these settings, but +# the default template can use interactive plots (Javascript using HighCharts) +# or flat plots (images, using MatPlotLib). With interactive plots, the report +# can prevent automatically rendering all graphs if there are lots of samples +# to prevent the browser being locked up when the report opens. + +# Try to use only interactive javascript graphs +plots_force_interactive: True +# If interactive, don't plot on load if > this number of datasets +num_datasets_plot_limit: 1 +# Swap tables for a beeswarm plot above this +max_table_rows: 10000 + +# Overwrite the defaults of which table columns are visible by default +table_columns_visible: + # "Base Calling": False # total: True + "Sequence Quality (bclconvert raw)": + percent_fails: False + percent_duplicates: False + percent_gc: False + avg_sequence_length: True + total_sequences: True + Trimming: + # R1 and R2 being stored in the same file + input_format: False + avg_sequence_length: False + total_record_count: False + mean_sequence_length: False + fraction_bp_trimmed: False + fraction_records_with_adapters: False + "Sequence Quality (trimmed)": + percent_fails: False + percent_duplicates: False + percent_gc: False + avg_sequence_length: True + total_sequences: True + "Human Filtering": + overall_alignment_rate: True + "Sequence Quality (filtered)": + percent_fails: False + percent_duplicates: False + percent_gc: False + avg_sequence_length: True + total_sequences: True + +module_order: + - bclconvert: + name: 'Base Calling' + # TODO: make sure we can split Stats.json files on a per-project basis + info: 'Conversion from BCL files to FASTQ files. Note this section currently includes samples generated in other projects, this is a known bug that will be addressed in the near future. ' + - fastqc: + name: 'Sequence Quality (raw)' + info: 'Sequence quality and summary statistics for raw sequences.' + path_filters: + - '*fastqc.zip' + - '*.csv' + - fastp: + name: 'Sequence Quality (adapter trimmed)' + info: 'Summary statistics from adapter trimming and quality control with fastp.' + fn: '*.json' + - fastqc: + name: 'Sequence Quality (trimmed)' + info: 'Sequence quality and summary statistics after quality-control and adapter trimming.' + path_filters: + - '*trimmed_fastqc.zip' + - '*fastp_fastqc.zip' diff --git a/tests/data/no-project-name-sample-sheet.csv b/tests/data/no-project-name-sample-sheet.csv new file mode 100644 index 00000000..a64b42f0 --- /dev/null +++ b/tests/data/no-project-name-sample-sheet.csv @@ -0,0 +1,813 @@ +[Header],,,,,,,,,, +IEMFileVersion,4,,,,,,,,, +Investigator Name,Knight,,,,,,,,, +Experiment Name,RKL0042,,,,,,,,, +Date,2020-02-26,,,,,,,,, +Workflow,GenerateFASTQ,,,,,,,,, +Application,FASTQ Only,,,,,,,,, +Assay,Metagenomic,,,,,,,,, +Description,,,,,,,,,, +Chemistry,Default,,,,,,,,, +,,,,,,,,,, +[Reads],,,,,,,,,, +150,,,,,,,,,, +150,,,,,,,,,, +,,,,,,,,,, +[Settings],,,,,,,,,, +ReverseComplement,0,,,,,,,,, +,,,,,,,,,, +[Data],,,,,,,,,, +Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,I5_Index_ID,index2,Not_A_Sample_Project,Well_description +1,CDPH-SAL_Salmonella_Typhi_MDL-143,CDPH-SAL_Salmonella_Typhi_MDL-143,Feist_11661_P40,A1,iTru7_107_07,CCGACTAT,iTru5_01_A,ACCGACAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-143 +1,CDPH-SAL_Salmonella_Typhi_MDL-144,CDPH-SAL_Salmonella_Typhi_MDL-144,Feist_11661_P40,C1,iTru7_107_08,CCGACTAT,iTru5_02_A,CTTCGCAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-144 +1,CDPH-SAL_Salmonella_Typhi_MDL-145,CDPH-SAL_Salmonella_Typhi_MDL-145,Feist_11661_P40,E1,iTru7_107_09,GCCTTGTT,iTru5_03_A,AACACCAC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-145 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+1,stALE_E_coli_A8_F20_I1_R1,stALE_E_coli_A8_F20_I1_R1,Feist_11661_P40,M15,iTru7_112_09,TGTGAAGC,iTru5_03_F,CCTAGAGA,Feist_11661,stALE_E. coli_A8.F20.I1.R1 +1,stALE_E_coli_A8_F42_I1_R1,stALE_E_coli_A8_F42_I1_R1,Feist_11661_P40,O15,iTru7_112_10,GTCTGATC,iTru5_04_F,TTCCAGGT,Feist_11661,stALE_E. coli_A8.F42.I1.R1 +1,stALE_E_coli_A9_F21_I1_R1,stALE_E_coli_A9_F21_I1_R1,Feist_11661_P40,A17,iTru7_112_11,TTCAGGAG,iTru5_05_F,TCAGCCTT,Feist_11661,stALE_E. coli_A9.F21.I1.R1 +1,stALE_E_coli_A9_F44_I1_R1,stALE_E_coli_A9_F44_I1_R1,Feist_11661_P40,C17,iTru7_112_12,ACGATGAC,iTru5_06_F,AGCCAACT,Feist_11661,stALE_E. coli_A9.F44.I1.R1 +1,stALE_E_coli_A10_F21_I1_R1,stALE_E_coli_A10_F21_I1_R1,Feist_11661_P40,E17,iTru7_113_01,CGTTATGC,iTru5_07_F,CTAGCTCA,Feist_11661,stALE_E. coli_A10.F21.I1.R1 +1,stALE_E_coli_A10_F43_I1_R1,stALE_E_coli_A10_F43_I1_R1,Feist_11661_P40,G17,iTru7_113_02,GATACTGG,iTru5_08_F,GGAAGAGA,Feist_11661,stALE_E. coli_A10.F43.I1.R1 +1,stALE_E_coli_A10_F131_I1_R1,stALE_E_coli_A10_F131_I1_R1,Feist_11661_P40,I17,iTru7_113_03,CTACTTGG,iTru5_09_F,AACACTGG,Feist_11661,stALE_E. coli_A10.F131.I1.R1 +1,stALE_E_coli_A11_F21_I1_R1,stALE_E_coli_A11_F21_I1_R1,Feist_11661_P40,K17,iTru7_113_04,CATACCAC,iTru5_10_F,ACTATCGC,Feist_11661,stALE_E. coli_A11.F21.I1.R1 +1,stALE_E_coli_A11_F43_I1_R1,stALE_E_coli_A11_F43_I1_R1,Feist_11661_P40,M17,iTru7_113_05,ACATTGCG,iTru5_11_F,ACAACAGC,Feist_11661,stALE_E. coli_A11.F43.I1.R1 +1,stALE_E_coli_A11_F119_I1_R1,stALE_E_coli_A11_F119_I1_R1,Feist_11661_P40,O17,iTru7_113_06,TGATCGGA,iTru5_12_F,TGTGGCTT,Feist_11661,stALE_E. coli_A11.F119.I1.R1 +1,stALE_E_coli_A12_F21_I1_R1,stALE_E_coli_A12_F21_I1_R1,Feist_11661_P40,A19,iTru7_113_07,AAGTGTCG,iTru5_01_G,GTTCCATG,Feist_11661,stALE_E. coli_A12.F21.I1.R1 +1,stALE_E_coli_A12_F43_I1_R1,stALE_E_coli_A12_F43_I1_R1,Feist_11661_P40,C19,iTru7_113_08,GAACGCTT,iTru5_02_G,TGGATGGT,Feist_11661,stALE_E. coli_A12.F43.I1.R1 +1,stALE_E_coli_A12_F136_I1_R1,stALE_E_coli_A12_F136_I1_R1,Feist_11661_P40,E19,iTru7_113_09,TCAAGGAC,iTru5_03_G,GCATAACG,Feist_11661,stALE_E. coli_A12.F136.I1.R1 +1,stALE_E_coli_A13_F20_I1_R1,stALE_E_coli_A13_F20_I1_R1,Feist_11661_P40,G19,iTru7_113_10,TCAACTGG,iTru5_04_G,TCGAACCT,Feist_11661,stALE_E. coli_A13.F20.I1.R1 +1,stALE_E_coli_A13_F42_I1_R1,stALE_E_coli_A13_F42_I1_R1,Feist_11661_P40,I19,iTru7_113_11,GGTTGATG,iTru5_05_G,ACATGCCA,Feist_11661,stALE_E. coli_A13.F42.I1.R1 +1,stALE_E_coli_A13_F121_I1_R1,stALE_E_coli_A13_F121_I1_R1,Feist_11661_P40,K19,iTru7_113_12,AAGGACAC,iTru5_06_G,GATCTTGC,Feist_11661,stALE_E. coli_A13.F121.I1.R1 +1,stALE_E_coli_A14_F20_I1_R1,stALE_E_coli_A14_F20_I1_R1,Feist_11661_P40,M19,iTru7_114_01,TTGATCCG,iTru5_07_G,GTTAAGCG,Feist_11661,stALE_E. coli_A14.F20.I1.R1 +1,stALE_E_coli_A14_F42_I1_R1,stALE_E_coli_A14_F42_I1_R1,Feist_11661_P40,O19,iTru7_114_02,GGTGATTC,iTru5_08_G,GTCATCGT,Feist_11661,stALE_E. coli_A14.F42.I1.R1 +1,stALE_E_coli_A14_F133_I1_R1,stALE_E_coli_A14_F133_I1_R1,Feist_11661_P40,A21,iTru7_114_03,GATTGCTC,iTru5_09_G,TCAGACAC,Feist_11661,stALE_E. coli_A14.F133.I1.R1 +1,stALE_E_coli_A15_F21_I1_R1,stALE_E_coli_A15_F21_I1_R1,Feist_11661_P40,C21,iTru7_114_04,ACCTGGAA,iTru5_10_G,GTCCTAAG,Feist_11661,stALE_E. coli_A15.F21.I1.R1 +1,stALE_E_coli_A15_F42_I1_R1,stALE_E_coli_A15_F42_I1_R1,Feist_11661_P40,E21,iTru7_114_05,CATCTACG,iTru5_11_G,AGACCTTG,Feist_11661,stALE_E. coli_A15.F42.I1.R1 +1,stALE_E_coli_A15_F117_I1_R1,stALE_E_coli_A15_F117_I1_R1,Feist_11661_P40,G21,iTru7_114_06,CCGTATCT,iTru5_12_G,AGACATGC,Feist_11661,stALE_E. coli_A15.F117.I1.R1 +1,stALE_E_coli_A16_F20_I1_R1,stALE_E_coli_A16_F20_I1_R1,Feist_11661_P40,I21,iTru7_114_07,CGGAATAC,iTru5_01_H,TAGCTGAG,Feist_11661,stALE_E. coli_A16.F20.I1.R1 +1,stALE_E_coli_A16_F42_I1_R1,stALE_E_coli_A16_F42_I1_R1,Feist_11661_P40,K21,iTru7_114_08,CTCCTAGA,iTru5_02_H,TTCGAAGC,Feist_11661,stALE_E. coli_A16.F42.I1.R1 +1,stALE_E_coli_A16_F134_I1_R1,stALE_E_coli_A16_F134_I1_R1,Feist_11661_P40,M21,iTru7_114_09,TGGTAGCT,iTru5_03_H,CAGTGCTT,Feist_11661,stALE_E. coli_A16.F134.I1.R1 +1,stALE_E_coli_A17_F21_I1_R1,stALE_E_coli_A17_F21_I1_R1,Feist_11661_P40,O21,iTru7_114_10,TCGAAGGT,iTru5_04_H,TAGTGCCA,Feist_11661,stALE_E. coli_A17.F21.I1.R1 +1,stALE_E_coli_A17_F118_I1_R1,stALE_E_coli_A17_F118_I1_R1,Feist_11661_P40,A23,iTru7_114_11,ACATAGGC,iTru5_05_H,GATGGAGT,Feist_11661,stALE_E. coli_A17.F118.I1.R1 +1,stALE_E_coli_A18_F18_I1_R1,stALE_E_coli_A18_F18_I1_R1,Feist_11661_P40,C23,iTru7_114_12,CTCAGAGT,iTru5_06_H,CCTCGTTA,Feist_11661,stALE_E. coli_A18.F18.I1.R1 +1,stALE_E_coli_A18_F39_I1_R1,stALE_E_coli_A18_F39_I1_R1,Feist_11661_P40,E23,iTru7_201_01,CTTGGATG,iTru5_07_H,CGATTGGA,Feist_11661,stALE_E. coli_A18.F39.I1.R1 +1,stALE_E_coli_A18_F130_I1_R1,stALE_E_coli_A18_F130_I1_R1,Feist_11661_P40,G23,iTru7_201_02,CAGTTGGA,iTru5_08_H,CCAACGAA,Feist_11661,stALE_E. coli_A18.F130.I1.R1 +1,3A,3A,Gerwick_tubes,I23,iTru7_201_03,GATAGGCT,iTru5_09_H,AGAAGGAC,Gerwick,3A +1,4A,4A,Gerwick_tubes,K23,iTru7_201_04,TTGACAGG,iTru5_10_H,TGACCGTT,Gerwick,4A +1,BLANK_40_12G,BLANK_40_12G,Feist_11661_P40,M23,iTru7_201_05,AGAATGCC,iTru5_11_H,GCGTTAGA,Feist_11661,BLANK.40.12G +1,BLANK_40_12H,BLANK_40_12H,Feist_11661_P40,O23,iTru7_201_06,CTACATCC,iTru5_12_H,TCTAGGAG,Feist_11661,BLANK.40.12H +1,Pputida_JBEI__HGL_Pputida_107_BP6,Pputida_JBEI__HGL_Pputida_107_BP6,Feist_11661_P41,A2,iTru7_201_07,TCATGGTG,iTru5_13_A,GGTATAGG,Feist_11661,Pputida_JBEI__HGL_Pputida_107_BP6 +1,Pputida_JBEI__HGL_Pputida_108_BP7,Pputida_JBEI__HGL_Pputida_108_BP7,Feist_11661_P41,C2,iTru7_201_08,TACACGCT,iTru5_14_A,TCCGATCA,Feist_11661,Pputida_JBEI__HGL_Pputida_108_BP7 +1,Pputida_JBEI__HGL_Pputida_109_BP8,Pputida_JBEI__HGL_Pputida_109_BP8,Feist_11661_P41,E2,iTru7_201_09,TACGGTTG,iTru5_15_A,CGACCTAA,Feist_11661,Pputida_JBEI__HGL_Pputida_109_BP8 +1,Pputida_JBEI__HGL_Pputida_110_M2,Pputida_JBEI__HGL_Pputida_110_M2,Feist_11661_P41,G2,iTru7_201_10,GGATACCA,iTru5_16_A,GACATCTC,Feist_11661,Pputida_JBEI__HGL_Pputida_110_M2 +1,Pputida_JBEI__HGL_Pputida_111_M5,Pputida_JBEI__HGL_Pputida_111_M5,Feist_11661_P41,I2,iTru7_201_11,TCGACATC,iTru5_17_A,CCAGTATC,Feist_11661,Pputida_JBEI__HGL_Pputida_111_M5 +1,Pputida_TALE__HGL_Pputida_112,Pputida_TALE__HGL_Pputida_112,Feist_11661_P41,K2,iTru7_201_12,GTTGTAGC,iTru5_18_A,ACGCTTCT,Feist_11661,Pputida_TALE__HGL_Pputida_112 +1,Pputida_TALE__HGL_Pputida_113,Pputida_TALE__HGL_Pputida_113,Feist_11661_P41,M2,iTru7_202_01,ATACGACC,iTru5_19_A,AACGCACA,Feist_11661,Pputida_TALE__HGL_Pputida_113 +1,Pputida_TALE__HGL_Pputida_114,Pputida_TALE__HGL_Pputida_114,Feist_11661_P41,O2,iTru7_202_02,TTCCAAGG,iTru5_20_A,TGATCACG,Feist_11661,Pputida_TALE__HGL_Pputida_114 +1,Pputida_TALE__HGL_Pputida_115,Pputida_TALE__HGL_Pputida_115,Feist_11661_P41,A4,iTru7_202_03,TTGCAGAC,iTru5_21_A,GCGTATCA,Feist_11661,Pputida_TALE__HGL_Pputida_115 +1,Pputida_TALE__HGL_Pputida_116,Pputida_TALE__HGL_Pputida_116,Feist_11661_P41,C4,iTru7_202_04,TGCCATTC,iTru5_22_A,GTGTCCTT,Feist_11661,Pputida_TALE__HGL_Pputida_116 +1,Pputida_TALE__HGL_Pputida_117,Pputida_TALE__HGL_Pputida_117,Feist_11661_P41,E4,iTru7_202_05,GATGTGTG,iTru5_23_A,GGTAACGT,Feist_11661,Pputida_TALE__HGL_Pputida_117 +1,Pputida_TALE__HGL_Pputida_118,Pputida_TALE__HGL_Pputida_118,Feist_11661_P41,G4,iTru7_202_06,ACTCTCGA,iTru5_24_A,CGAGAGAA,Feist_11661,Pputida_TALE__HGL_Pputida_118 +1,Pputida_TALE__HGL_Pputida_119,Pputida_TALE__HGL_Pputida_119,Feist_11661_P41,I4,iTru7_202_07,GAGTCTCT,iTru5_13_B,CATTGACG,Feist_11661,Pputida_TALE__HGL_Pputida_119 +1,Pputida_TALE__HGL_Pputida_120,Pputida_TALE__HGL_Pputida_120,Feist_11661_P41,K4,iTru7_202_08,CAACACCT,iTru5_14_B,GGTGATGA,Feist_11661,Pputida_TALE__HGL_Pputida_120 +1,Pputida_TALE__HGL_Pputida_121,Pputida_TALE__HGL_Pputida_121,Feist_11661_P41,M4,iTru7_202_09,CAGTCTTC,iTru5_15_B,AACCGTGT,Feist_11661,Pputida_TALE__HGL_Pputida_121 +1,Pputida_TALE__HGL_Pputida_122,Pputida_TALE__HGL_Pputida_122,Feist_11661_P41,O4,iTru7_202_10,GGACTGTT,iTru5_16_B,CCTATTGG,Feist_11661,Pputida_TALE__HGL_Pputida_122 +1,Pputida_TALE__HGL_Pputida_123,Pputida_TALE__HGL_Pputida_123,Feist_11661_P41,A6,iTru7_202_11,CTTAGTGG,iTru5_17_B,TCAGTAGG,Feist_11661,Pputida_TALE__HGL_Pputida_123 +1,Pputida_TALE__HGL_Pputida_124,Pputida_TALE__HGL_Pputida_124,Feist_11661_P41,C6,iTru7_202_12,ATTGCGTG,iTru5_18_B,TATGCGGT,Feist_11661,Pputida_TALE__HGL_Pputida_124 +1,Pputida_TALE__HGL_Pputida_125,Pputida_TALE__HGL_Pputida_125,Feist_11661_P41,E6,iTru7_203_01,GTAACGAC,iTru5_19_B,ATGCCTAG,Feist_11661,Pputida_TALE__HGL_Pputida_125 +1,Pputida_TALE__HGL_Pputida_126,Pputida_TALE__HGL_Pputida_126,Feist_11661_P41,G6,iTru7_203_02,CTTGCTGT,iTru5_20_B,CTAGCAGT,Feist_11661,Pputida_TALE__HGL_Pputida_126 +1,Pputida_TALE__HGL_Pputida_127,Pputida_TALE__HGL_Pputida_127,Feist_11661_P41,I6,iTru7_203_03,GTTGTTCG,iTru5_21_B,AGGTCAAC,Feist_11661,Pputida_TALE__HGL_Pputida_127 +1,Pputida_TALE__HGL_Pputida_128,Pputida_TALE__HGL_Pputida_128,Feist_11661_P41,K6,iTru7_203_04,CGTTGAGT,iTru5_22_B,GAACGTGA,Feist_11661,Pputida_TALE__HGL_Pputida_128 +1,Pputida_TALE__HGL_Pputida_129,Pputida_TALE__HGL_Pputida_129,Feist_11661_P41,M6,iTru7_203_05,TCGAACCA,iTru5_23_B,ATCATGCG,Feist_11661,Pputida_TALE__HGL_Pputida_129 +1,Pputida_TALE__HGL_Pputida_130,Pputida_TALE__HGL_Pputida_130,Feist_11661_P41,O6,iTru7_203_06,AGACCGTA,iTru5_24_B,CAACGAGT,Feist_11661,Pputida_TALE__HGL_Pputida_130 +1,Pputida_TALE__HGL_Pputida_131,Pputida_TALE__HGL_Pputida_131,Feist_11661_P41,A8,iTru7_203_07,CAGAGTGT,iTru5_13_C,CGCAATGT,Feist_11661,Pputida_TALE__HGL_Pputida_131 +1,Pputida_TALE__HGL_Pputida_132,Pputida_TALE__HGL_Pputida_132,Feist_11661_P41,C8,iTru7_203_08,GACAAGAG,iTru5_14_C,AACAAGGC,Feist_11661,Pputida_TALE__HGL_Pputida_132 +1,Pputida_TALE__HGL_Pputida_133,Pputida_TALE__HGL_Pputida_133,Feist_11661_P41,E8,iTru7_203_09,GAACACAC,iTru5_15_C,ACCATGTC,Feist_11661,Pputida_TALE__HGL_Pputida_133 +1,Pputida_TALE__HGL_Pputida_134,Pputida_TALE__HGL_Pputida_134,Feist_11661_P41,G8,iTru7_203_10,GCTTAGCT,iTru5_16_C,AATCCAGC,Feist_11661,Pputida_TALE__HGL_Pputida_134 +1,Pputida_TALE__HGL_Pputida_135,Pputida_TALE__HGL_Pputida_135,Feist_11661_P41,I8,iTru7_203_11,GAAGGAAG,iTru5_17_C,TTGCAACG,Feist_11661,Pputida_TALE__HGL_Pputida_135 +1,Pputida_TALE__HGL_Pputida_136,Pputida_TALE__HGL_Pputida_136,Feist_11661_P41,K8,iTru7_203_12,CAGTTCTG,iTru5_18_C,ACCTTCGA,Feist_11661,Pputida_TALE__HGL_Pputida_136 +1,Pputida_TALE__HGL_Pputida_137,Pputida_TALE__HGL_Pputida_137,Feist_11661_P41,M8,iTru7_204_01,CAGGAGAT,iTru5_19_C,CATACGGA,Feist_11661,Pputida_TALE__HGL_Pputida_137 +1,Pputida_TALE__HGL_Pputida_138,Pputida_TALE__HGL_Pputida_138,Feist_11661_P41,O8,iTru7_204_02,GTAGCATC,iTru5_20_C,GACCGATA,Feist_11661,Pputida_TALE__HGL_Pputida_138 +1,Pputida_TALE__HGL_Pputida_139,Pputida_TALE__HGL_Pputida_139,Feist_11661_P41,A10,iTru7_204_03,TCGTTCGT,iTru5_21_C,AAGCTGGT,Feist_11661,Pputida_TALE__HGL_Pputida_139 +1,Pputida_TALE__HGL_Pputida_140,Pputida_TALE__HGL_Pputida_140,Feist_11661_P41,C10,iTru7_204_04,GGCAAGTT,iTru5_22_C,ACACCTCA,Feist_11661,Pputida_TALE__HGL_Pputida_140 +1,Pputida_TALE__HGL_Pputida_141,Pputida_TALE__HGL_Pputida_141,Feist_11661_P41,E10,iTru7_204_05,ACCATGTG,iTru5_23_C,CGGAGTAT,Feist_11661,Pputida_TALE__HGL_Pputida_141 +1,Pputida_TALE__HGL_Pputida_142,Pputida_TALE__HGL_Pputida_142,Feist_11661_P41,G10,iTru7_204_06,CAACGGAT,iTru5_24_C,CTCGACTT,Feist_11661,Pputida_TALE__HGL_Pputida_142 +1,Pputida_TALE__HGL_Pputida_143,Pputida_TALE__HGL_Pputida_143,Feist_11661_P41,I10,iTru7_204_07,CAATCGAC,iTru5_13_D,ATCCACGA,Feist_11661,Pputida_TALE__HGL_Pputida_143 +1,Pputida_TALE__HGL_Pputida_144,Pputida_TALE__HGL_Pputida_144,Feist_11661_P41,K10,iTru7_204_08,GTGTTCCT,iTru5_14_D,ACAGTTCG,Feist_11661,Pputida_TALE__HGL_Pputida_144 +1,Pputida_PALE__HGL_Pputida_145,Pputida_PALE__HGL_Pputida_145,Feist_11661_P41_diluted,M10,iTru7_204_09,AGGAACCT,iTru5_15_D,ACAAGACG,Feist_11661,Pputida_PALE__HGL_Pputida_145 +1,Pputida_PALE__HGL_Pputida_146,Pputida_PALE__HGL_Pputida_146,Feist_11661_P41_diluted,O10,iTru7_204_10,ACCTTCTC,iTru5_16_D,ATCGTGGT,Feist_11661,Pputida_PALE__HGL_Pputida_146 +1,Pputida_PALE__HGL_Pputida_147,Pputida_PALE__HGL_Pputida_147,Feist_11661_P41_diluted,A12,iTru7_204_11,CCGTAAGA,iTru5_17_D,AGTCAGGT,Feist_11661,Pputida_PALE__HGL_Pputida_147 +1,Pputida_PALE__HGL_Pputida_148,Pputida_PALE__HGL_Pputida_148,Feist_11661_P41_diluted,C12,iTru7_204_12,ATCGGTGT,iTru5_18_D,CATCAACC,Feist_11661,Pputida_PALE__HGL_Pputida_148 +1,Pputida_PALE__HGL_Pputida_149,Pputida_PALE__HGL_Pputida_149,Feist_11661_P41_diluted,E12,iTru7_205_01,AGCTCCTA,iTru5_19_D,GGTCACTA,Feist_11661,Pputida_PALE__HGL_Pputida_149 +1,Pputida_PALE__HGL_Pputida_150,Pputida_PALE__HGL_Pputida_150,Feist_11661_P41,G12,iTru7_205_02,CCTTGATC,iTru5_20_D,CGGCATTA,Feist_11661,Pputida_PALE__HGL_Pputida_150 +1,Pputida_PALE__HGL_Pputida_151,Pputida_PALE__HGL_Pputida_151,Feist_11661_P41_diluted,I12,iTru7_205_03,CCATTCAC,iTru5_21_D,ACTCGATC,Feist_11661,Pputida_PALE__HGL_Pputida_151 +1,Pputida_PALE__HGL_Pputida_152,Pputida_PALE__HGL_Pputida_152,Feist_11661_P41,K12,iTru7_205_04,GGACAATC,iTru5_22_D,ATAGGTCC,Feist_11661,Pputida_PALE__HGL_Pputida_152 +1,Pputida_PALE__HGL_Pputida_153,Pputida_PALE__HGL_Pputida_153,Feist_11661_P41,M12,iTru7_205_05,AAGGCGTT,iTru5_23_D,CAGTCACA,Feist_11661,Pputida_PALE__HGL_Pputida_153 +1,Pputida_PALE__HGL_Pputida_154,Pputida_PALE__HGL_Pputida_154,Feist_11661_P41_diluted,O12,iTru7_205_06,GCCATAAC,iTru5_24_D,TAGTGGTG,Feist_11661,Pputida_PALE__HGL_Pputida_154 +1,Pputida_PALE__HGL_Pputida_155,Pputida_PALE__HGL_Pputida_155,Feist_11661_P41_diluted,A14,iTru7_205_07,GAAGTTGG,iTru5_13_E,CTCCTGAA,Feist_11661,Pputida_PALE__HGL_Pputida_155 +1,Pputida_PALE__HGL_Pputida_156,Pputida_PALE__HGL_Pputida_156,Feist_11661_P41_diluted,C14,iTru7_205_08,AGCCAAGT,iTru5_14_E,AATCGCTG,Feist_11661,Pputida_PALE__HGL_Pputida_156 +1,Pputida_PALE__HGL_Pputida_157,Pputida_PALE__HGL_Pputida_157,Feist_11661_P41,E14,iTru7_205_09,TGACTGAC,iTru5_15_E,TGATAGGC,Feist_11661,Pputida_PALE__HGL_Pputida_157 +1,Pputida_PALE__HGL_Pputida_158,Pputida_PALE__HGL_Pputida_158,Feist_11661_P41_diluted,G14,iTru7_205_10,CACCTGTT,iTru5_16_E,ATGCGTCA,Feist_11661,Pputida_PALE__HGL_Pputida_158 +1,Pputida_PALE__HGL_Pputida_159,Pputida_PALE__HGL_Pputida_159,Feist_11661_P41,I14,iTru7_205_11,ATCCGGTA,iTru5_17_E,CAGCATAC,Feist_11661,Pputida_PALE__HGL_Pputida_159 +1,Pputida_PALE__HGL_Pputida_160,Pputida_PALE__HGL_Pputida_160,Feist_11661_P41,K14,iTru7_205_12,ATCTGTCC,iTru5_18_E,AAGTGCAG,Feist_11661,Pputida_PALE__HGL_Pputida_160 +1,Pputida_PALE__HGL_Pputida_161,Pputida_PALE__HGL_Pputida_161,Feist_11661_P41_diluted,M14,iTru7_206_01,CCAAGACT,iTru5_19_E,GTATTCCG,Feist_11661,Pputida_PALE__HGL_Pputida_161 +1,Pputida_PALE__HGL_Pputida_162,Pputida_PALE__HGL_Pputida_162,Feist_11661_P41_diluted,O14,iTru7_206_02,ATGGCGAA,iTru5_20_E,GTGATCCA,Feist_11661,Pputida_PALE__HGL_Pputida_162 +1,Pputida_PALE__HGL_Pputida_163,Pputida_PALE__HGL_Pputida_163,Feist_11661_P41_diluted,A16,iTru7_206_03,GGTAGTGT,iTru5_21_E,TATGGCAC,Feist_11661,Pputida_PALE__HGL_Pputida_163 +1,Pputida_PALE__HGL_Pputida_164,Pputida_PALE__HGL_Pputida_164,Feist_11661_P41,C16,iTru7_206_04,TCGCTGTT,iTru5_22_E,ACCATAGG,Feist_11661,Pputida_PALE__HGL_Pputida_164 +1,Pputida_PALE__HGL_Pputida_165,Pputida_PALE__HGL_Pputida_165,Feist_11661_P41_diluted,E16,iTru7_206_05,AACGTGGA,iTru5_23_E,CTCCAATC,Feist_11661,Pputida_PALE__HGL_Pputida_165 +1,Pputida_PALE__HGL_Pputida_166,Pputida_PALE__HGL_Pputida_166,Feist_11661_P41,G16,iTru7_206_06,AACGACGT,iTru5_24_E,AGATACGG,Feist_11661,Pputida_PALE__HGL_Pputida_166 +1,Pputida_PALE__HGL_Pputida_167,Pputida_PALE__HGL_Pputida_167,Feist_11661_P41,I16,iTru7_206_07,AACAGGAC,iTru5_13_F,TCGATGAC,Feist_11661,Pputida_PALE__HGL_Pputida_167 +1,Pputida_PALE__HGL_Pputida_168,Pputida_PALE__HGL_Pputida_168,Feist_11661_P41,K16,iTru7_206_08,AAGCGCAT,iTru5_14_F,CCAACACT,Feist_11661,Pputida_PALE__HGL_Pputida_168 +1,Pputida_PALE__HGL_Pputida_169,Pputida_PALE__HGL_Pputida_169,Feist_11661_P41,M16,iTru7_206_09,CACTGACA,iTru5_15_F,CTTCACTG,Feist_11661,Pputida_PALE__HGL_Pputida_169 +1,Pputida_PALE__HGL_Pputida_170,Pputida_PALE__HGL_Pputida_170,Feist_11661_P41,O16,iTru7_206_10,AGGTCACT,iTru5_16_F,CGATGTTC,Feist_11661,Pputida_PALE__HGL_Pputida_170 +1,Pputida_PALE__HGL_Pputida_171,Pputida_PALE__HGL_Pputida_171,Feist_11661_P41,A18,iTru7_206_11,GTCACTGT,iTru5_17_F,ACCGGTTA,Feist_11661,Pputida_PALE__HGL_Pputida_171 +1,Pputida_PALE__HGL_Pputida_172,Pputida_PALE__HGL_Pputida_172,Feist_11661_P41,C18,iTru7_206_12,ATGCCAAC,iTru5_18_F,CTTACAGC,Feist_11661,Pputida_PALE__HGL_Pputida_172 +1,Pputida_PALE__HGL_Pputida_173,Pputida_PALE__HGL_Pputida_173,Feist_11661_P41,E18,iTru7_207_01,CACGTTGT,iTru5_19_F,TGGCTCTT,Feist_11661,Pputida_PALE__HGL_Pputida_173 +1,Pputida_PALE__HGL_Pputida_174,Pputida_PALE__HGL_Pputida_174,Feist_11661_P41_diluted,G18,iTru7_207_02,TATTCCGG,iTru5_20_F,AAGACCGT,Feist_11661,Pputida_PALE__HGL_Pputida_174 +1,Pputida_PALE__HGL_Pputida_175,Pputida_PALE__HGL_Pputida_175,Feist_11661_P41,I18,iTru7_207_03,TGCTTCCA,iTru5_21_F,GGACATCA,Feist_11661,Pputida_PALE__HGL_Pputida_175 +1,Pputida_PALE__HGL_Pputida_176,Pputida_PALE__HGL_Pputida_176,Feist_11661_P41_diluted,K18,iTru7_207_04,GTCTAGGT,iTru5_22_F,TTGGTGCA,Feist_11661,Pputida_PALE__HGL_Pputida_176 +1,JM-Metabolic__GN0_2005,JM-Metabolic__GN0_2005,Feist_11661_P41,M18,iTru7_207_05,GTTCAACC,iTru5_23_F,AAGCGTTC,Feist_11661,JM-Metabolic__GN0_2005 +1,JM-Metabolic__GN0_2007,JM-Metabolic__GN0_2007,Feist_11661_P41,O18,iTru7_207_06,CGCAATCT,iTru5_24_F,ACTCTCCA,Feist_11661,JM-Metabolic__GN0_2007 +1,JM-Metabolic__GN0_2009,JM-Metabolic__GN0_2009,Feist_11661_P41,A20,iTru7_207_07,TTAAGCGG,iTru5_13_G,GAACCTTC,Feist_11661,JM-Metabolic__GN0_2009 +1,JM-Metabolic__GN0_2094,JM-Metabolic__GN0_2094,Feist_11661_P41_diluted,C20,iTru7_207_08,TGCTTGGT,iTru5_14_G,GGAACATG,Feist_11661,JM-Metabolic__GN0_2094 +1,JM-Metabolic__GN0_2099,JM-Metabolic__GN0_2099,Feist_11661_P41_diluted,E20,iTru7_207_09,ACACACTC,iTru5_15_G,GCCTATGT,Feist_11661,JM-Metabolic__GN0_2099 +1,JM-Metabolic__GN0_2148,JM-Metabolic__GN0_2148,Feist_11661_P41_diluted,G20,iTru7_207_10,CCACTTCT,iTru5_16_G,CCGTAACT,Feist_11661,JM-Metabolic__GN0_2148 +1,JM-Metabolic__GN0_2165,JM-Metabolic__GN0_2165,Feist_11661_P41_diluted,I20,iTru7_207_11,TTGGTCTC,iTru5_17_G,CGGATCAA,Feist_11661,JM-Metabolic__GN0_2165 +1,JM-Metabolic__GN0_2169,JM-Metabolic__GN0_2169,Feist_11661_P41,K20,iTru7_207_12,CTCATCAG,iTru5_18_G,CCACATTG,Feist_11661,JM-Metabolic__GN0_2169 +1,JM-Metabolic__GN0_2172,JM-Metabolic__GN0_2172,Feist_11661_P41,M20,iTru7_208_01,ATGACGTC,iTru5_19_G,CTCTATCG,Feist_11661,JM-Metabolic__GN0_2172 +1,JM-Metabolic__GN0_2175,JM-Metabolic__GN0_2175,Feist_11661_P41,O20,iTru7_208_02,AACCTTGG,iTru5_20_G,TGTGTCAG,Feist_11661,JM-Metabolic__GN0_2175 +1,JM-Metabolic__GN0_2183,JM-Metabolic__GN0_2183,Feist_11661_P41_diluted,A22,iTru7_208_03,GTCTTGCA,iTru5_21_G,CGCAACTA,Feist_11661,JM-Metabolic__GN0_2183 +1,JM-Metabolic__GN0_2215,JM-Metabolic__GN0_2215,Feist_11661_P41_diluted,C22,iTru7_208_04,CAAGTGCA,iTru5_22_G,GATCAGAC,Feist_11661,JM-Metabolic__GN0_2215 +1,JM-Metabolic__GN0_2254,JM-Metabolic__GN0_2254,Feist_11661_P41_diluted,E22,iTru7_208_05,TCCGAGTT,iTru5_23_G,ATTCCGCT,Feist_11661,JM-Metabolic__GN0_2254 +1,JM-Metabolic__GN0_2277,JM-Metabolic__GN0_2277,Feist_11661_P41_diluted,G22,iTru7_208_06,ACCTAAGG,iTru5_24_G,ATCCTTCC,Feist_11661,JM-Metabolic__GN0_2277 +1,JM-Metabolic__GN0_2290,JM-Metabolic__GN0_2290,Feist_11661_P41,I22,iTru7_208_07,TTGGACGT,iTru5_13_H,GCTTCACA,Feist_11661,JM-Metabolic__GN0_2290 +1,JM-Metabolic__GN0_2337,JM-Metabolic__GN0_2337,Feist_11661_P41_diluted,K22,iTru7_208_08,GATAGCGA,iTru5_14_H,CTTCGGTT,Feist_11661,JM-Metabolic__GN0_2337 +1,JM-Metabolic__GN0_2317,JM-Metabolic__GN0_2317,Feist_11661_P41_diluted,M22,iTru7_208_09,TTGGTGAG,iTru5_15_H,CATGGATC,Feist_11661,JM-Metabolic__GN0_2317 +1,JM-Metabolic__GN0_2354,JM-Metabolic__GN0_2354,Feist_11661_P41_diluted,O22,iTru7_208_10,AACTGGTG,iTru5_16_H,GTCAACAG,Feist_11661,JM-Metabolic__GN0_2354 +1,JM-Metabolic__GN0_2375,JM-Metabolic__GN0_2375,Feist_11661_P41_diluted,A24,iTru7_208_11,TAGCCGAA,iTru5_17_H,AATTCCGG,Feist_11661,JM-Metabolic__GN0_2375 +1,JM-Metabolic__GN0_2380,JM-Metabolic__GN0_2380,Feist_11661_P41_diluted,C24,iTru7_208_12,TGCGAACT,iTru5_18_H,GGCGAATA,Feist_11661,JM-Metabolic__GN0_2380 +1,JM-Metabolic__GN0_2393,JM-Metabolic__GN0_2393,Feist_11661_P41_diluted,E24,iTru7_209_01,GACTTAGG,iTru5_19_H,AGGAGGTT,Feist_11661,JM-Metabolic__GN0_2393 +1,JM-Metabolic__GN0_2404,JM-Metabolic__GN0_2404,Feist_11661_P41_diluted,G24,iTru7_209_02,ACACCAGT,iTru5_20_H,ACTCTGAG,Feist_11661,JM-Metabolic__GN0_2404 +1,5B,5B,Gerwick_tubes,I24,iTru7_209_03,CCTGATTG,iTru5_21_H,GCCTTCTT,Gerwick,5B +1,6A,6A,Gerwick_tubes,K24,iTru7_209_04,TTGTGTGC,iTru5_22_H,TGGACCAT,Gerwick,6A +1,BLANK_41_12G,BLANK_41_12G,Feist_11661_P41,M24,iTru7_209_05,TACCACAG,iTru5_23_H,GCATAGTC,Gerwick,BLANK.41.12G +1,BLANK_41_12H,BLANK_41_12H,Feist_11661_P41,O24,iTru7_209_06,ATTCGAGG,iTru5_24_H,TACACACG,Feist_11661,BLANK.41.12H +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_14,Deoxyribose_PALE_ALE__MG1655_BOP27_4_14,Feist_11661_P42,B1,iTru7_209_07,GCACGTAA,iTru5_101_A,AACAACCG,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_4_14 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_23,Deoxyribose_PALE_ALE__MG1655_BOP27_4_23,Feist_11661_P42,D1,iTru7_209_08,GTGTGACA,iTru5_102_A,AAGCCTGA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_4_23 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_48,Deoxyribose_PALE_ALE__MG1655_BOP27_4_48,Feist_11661_P42,F1,iTru7_209_09,CTGGTTCT,iTru5_103_A,AAGGACCA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_4_48 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_6_21,Deoxyribose_PALE_ALE__MG1655_BOP27_6_21,Feist_11661_P42,H1,iTru7_209_10,ACTGTGTC,iTru5_104_A,ACAACGTG,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_6_21 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_6_35,Deoxyribose_PALE_ALE__MG1655_BOP27_6_35,Feist_11661_P42,J1,iTru7_209_11,CCATACGT,iTru5_105_A,ACGAACGA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_6_35 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_13,Deoxyribose_PALE_ALE__MG1655_BOP27_10_13,Feist_11661_P42,L1,iTru7_209_12,GGTACTAC,iTru5_106_A,ACGTCCAA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_10_13 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_28,Deoxyribose_PALE_ALE__MG1655_BOP27_10_28,Feist_11661_P42,N1,iTru7_210_01,CAGTCCAA,iTru5_107_A,ACTGGTGT,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_10_28 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_51,Deoxyribose_PALE_ALE__MG1655_BOP27_10_51,Feist_11661_P42,P1,iTru7_210_02,TCGTAGTC,iTru5_108_A,AGATCGTC,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_10_51 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_19,Deoxyribose_PALE_ALE__MG1655_Lib4_18_19,Feist_11661_P42,B3,iTru7_210_03,TCGAGTGA,iTru5_109_A,AGCGAGAT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_18_19 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_59,Deoxyribose_PALE_ALE__MG1655_Lib4_18_59,Feist_11661_P42,D3,iTru7_210_04,TGTAGCCA,iTru5_110_A,AGGATAGC,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_18_59 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_35,Deoxyribose_PALE_ALE__MG1655_Lib4_18_35,Feist_11661_P42,F3,iTru7_210_05,TGCAGGTA,iTru5_111_A,AGGTGTTG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_18_35 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_16,Deoxyribose_PALE_ALE__MG1655_Lib4_20_16,Feist_11661_P42,H3,iTru7_210_06,CTAGGTGA,iTru5_112_A,AGTCTTGG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_20_16 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_43,Deoxyribose_PALE_ALE__MG1655_Lib4_20_43,Feist_11661_P42,J3,iTru7_210_07,CTCCATGT,iTru5_101_B,GGTTGGTA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_20_43 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_71,Deoxyribose_PALE_ALE__MG1655_Lib4_20_71,Feist_11661_P42,L3,iTru7_210_08,CTTACAGC,iTru5_102_B,GGAGGAAT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_20_71 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_16,Deoxyribose_PALE_ALE__MG1655_Lib4_22_16,Feist_11661_P42,N3,iTru7_210_09,CGTATTCG,iTru5_103_B,GTAAGGTG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_22_16 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_28,Deoxyribose_PALE_ALE__MG1655_Lib4_22_28,Feist_11661_P42,P3,iTru7_210_10,ATTCTGGC,iTru5_104_B,GGTGTACA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_22_28 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_52,Deoxyribose_PALE_ALE__MG1655_Lib4_22_52,Feist_11661_P42,B5,iTru7_210_11,TACCAGGA,iTru5_105_B,GGATGTAG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_22_52 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_9,Deoxyribose_PALE_ALE__MG1655_Lib4_24_9,Feist_11661_P42,D5,iTru7_210_12,TACATCGG,iTru5_106_B,GTCCTGTT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_24_9 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_24,Deoxyribose_PALE_ALE__MG1655_Lib4_24_24,Feist_11661_P42,F5,iTru7_301_01,GTGGTGTT,iTru5_107_B,GTACCACA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_24_24 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_52,Deoxyribose_PALE_ALE__MG1655_Lib4_24_52,Feist_11661_P42,H5,iTru7_301_02,CGCATGAT,iTru5_108_B,GATCTCAG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_24_52 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_6,Deoxyribose_PALE_ALE__MG1655_Lib4_26_6,Feist_11661_P42,J5,iTru7_301_03,AGTCGACA,iTru5_109_B,GAGCTCTA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_26_6 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_27,Deoxyribose_PALE_ALE__MG1655_Lib4_26_27,Feist_11661_P42,L5,iTru7_301_04,GTGAGCTT,iTru5_110_B,TACTAGCG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_26_27 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_69,Deoxyribose_PALE_ALE__MG1655_Lib4_26_69,Feist_11661_P42,N5,iTru7_301_05,GACATTCC,iTru5_111_B,GCACACAA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_26_69 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_13,Deoxyribose_PALE_ALE__MG1655_Lib4_28_13,Feist_11661_P42,P5,iTru7_301_06,AGTTCGTC,iTru5_112_B,GAATCACC,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_28_13 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_28,Deoxyribose_PALE_ALE__MG1655_Lib4_28_28,Feist_11661_P42,B7,iTru7_301_07,TAATGCCG,iTru5_101_C,AACAGCGA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_28_28 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_53,Deoxyribose_PALE_ALE__MG1655_Lib4_28_53,Feist_11661_P42,D7,iTru7_301_08,CGACCATT,iTru5_102_C,AAGCGACT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_28_53 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_7,Deoxyribose_PALE_ALE__MG1655_Lib4_30_7,Feist_11661_P42,F7,iTru7_301_09,CTGAAGCT,iTru5_103_C,AAGGCGTA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_30_7 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_22,Deoxyribose_PALE_ALE__MG1655_Lib4_30_22,Feist_11661_P42,H7,iTru7_301_10,TTGAGGCA,iTru5_104_C,ACACCGAT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_30_22 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_60,Deoxyribose_PALE_ALE__MG1655_Lib4_30_60,Feist_11661_P42,J7,iTru7_301_11,GATCGAGT,iTru5_105_C,ACGAATCC,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_30_60 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_6,Deoxyribose_PALE_ALE__MG1655_Lib4_32_6,Feist_11661_P42,L7,iTru7_301_12,ATACTCCG,iTru5_106_C,ACTACGGT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_32_6 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_20,Deoxyribose_PALE_ALE__MG1655_Lib4_32_20,Feist_11661_P42,N7,iTru7_302_01,AAGTCCGT,iTru5_107_C,AGAAGCCT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_32_20 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_56,Deoxyribose_PALE_ALE__MG1655_Lib4_32_56,Feist_11661_P42,P7,iTru7_302_02,TAGCGTCT,iTru5_108_C,AGATTGCG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_32_56 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24,Feist_11661_P42,B9,iTru7_302_03,TGACGCAT,iTru5_109_C,AGCGTGTA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_24 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57,Feist_11661_P42,D9,iTru7_302_04,AGCGTGTT,iTru5_110_C,AGGCTGAA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_57 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69,Feist_11661_P42,F9,iTru7_302_05,TGCACCAA,iTru5_111_C,AGGTTCCT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_69 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23,Feist_11661_P42,H9,iTru7_302_06,ATCACACG,iTru5_112_C,AGTGACCT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50,Feist_11661_P42,J9,iTru7_302_07,ATGCCTGT,iTru5_101_D,GGTTAGCT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_50 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61,Feist_11661_P42,L9,iTru7_302_08,ACCTGACT,iTru5_102_D,GTAGCGTA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_61 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22,Feist_11661_P42,N9,iTru7_302_09,GCTTCGAA,iTru5_103_D,GGACTACT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_22 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36,Feist_11661_P42,P9,iTru7_302_10,CGGTCATA,iTru5_104_D,TGGTTCGA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_36 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46,Feist_11661_P42,B11,iTru7_302_11,GTTAGACG,iTru5_105_D,GGAGTCTT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_46 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23,Feist_11661_P42,D11,iTru7_302_12,TCTAACGC,iTru5_106_D,GGATTCAC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41,Feist_11661_P42,F11,iTru7_303_01,ATAGCGGT,iTru5_107_D,TCGGATTC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_41 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51,Feist_11661_P42,H11,iTru7_303_02,GGACCTAT,iTru5_108_D,GAGCAATC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_51 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25,Feist_11661_P42,J11,iTru7_303_03,CGATGCTT,iTru5_109_D,GATCCACT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58,Feist_11661_P42,L11,iTru7_303_04,GAGCTTGT,iTru5_110_D,GAAGACTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_58 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64,Feist_11661_P42,N11,iTru7_303_05,GTGAAGTG,iTru5_111_D,GCCACTTA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_64 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25,Feist_11661_P42,P11,iTru7_303_06,GAGTGGTT,iTru5_112_D,TCCATTGC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55,Feist_11661_P42,B13,iTru7_303_07,TGATACGC,iTru5_101_E,AACAGTCC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_55 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63,Feist_11661_P42,D13,iTru7_303_08,AGCAGATG,iTru5_102_E,AAGCTCAC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_63 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23,Feist_11661_P42,F13,iTru7_303_09,CCAGTGTT,iTru5_103_E,AAGTCCTC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46,Feist_11661_P42,H13,iTru7_303_10,ATTCCTCC,iTru5_104_E,ACACTCTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_46 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51,Feist_11661_P42,J13,iTru7_303_11,CTAACTCG,iTru5_105_E,ACGGTACA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_51 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25,Feist_11661_P42,L13,iTru7_303_12,GATGAGAC,iTru5_106_E,ACTCCTAC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49,Feist_11661_P42,N13,iTru7_304_01,TCAGGCTT,iTru5_107_E,AGAGGATG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_49 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57,Feist_11661_P42,P13,iTru7_304_02,GTTCTCGT,iTru5_108_E,AGCCGTAA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_57 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24,Feist_11661_P42,B15,iTru7_304_03,ATCGATCG,iTru5_109_E,AGCTTCAG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_24 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42,Feist_11661_P42,D15,iTru7_304_04,CCTCAGTT,iTru5_110_E,AGGTAGGA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_42 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62,Feist_11661_P42,F15,iTru7_304_05,ACTGCTAG,iTru5_111_E,AGTACACG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_62 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21,Feist_11661_P42,H15,iTru7_304_06,TCCGTGAA,iTru5_112_E,AGTGCATC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_21 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41,Feist_11661_P42,J15,iTru7_304_07,GGATTCGT,iTru5_101_F,TTGGACTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_41 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50,Feist_11661_P42,L15,iTru7_304_08,GGTCAGAT,iTru5_102_F,GTCGATTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_50 +1,JM-Metabolic__GN02514,JM-Metabolic__GN02514,Feist_11661_P42,N15,iTru7_304_09,TCGTGGAT,iTru5_103_F,GGCATTCT,Feist_11661,JM-Metabolic__GN02514 +1,JM-Metabolic__GN02529,JM-Metabolic__GN02529,Feist_11661_P42_diluted,P15,iTru7_304_10,CGTGTGTA,iTru5_104_F,TGGTATCC,Feist_11661,JM-Metabolic__GN02529 +1,JM-Metabolic__GN02531,JM-Metabolic__GN02531,Feist_11661_P42_diluted,B17,iTru7_304_11,GTGTCTGA,iTru5_105_F,GGCAAGTT,Feist_11661,JM-Metabolic__GN02531 +1,JM-Metabolic__GN02567,JM-Metabolic__GN02567,Feist_11661_P42,D17,iTru7_304_12,GAATCGTG,iTru5_106_F,GTCTGAGT,Feist_11661,JM-Metabolic__GN02567 +1,JM-Metabolic__GN02590,JM-Metabolic__GN02590,Feist_11661_P42_diluted,F17,iTru7_305_01,GCGATAGT,iTru5_107_F,TCTACGCA,Feist_11661,JM-Metabolic__GN02590 +1,JM-Metabolic__GN02657,JM-Metabolic__GN02657,Feist_11661_P42_diluted,H17,iTru7_305_02,GGCTATTG,iTru5_108_F,GAGGCATT,Feist_11661,JM-Metabolic__GN02657 +1,JM-Metabolic__GN02748,JM-Metabolic__GN02748,Feist_11661_P42,J17,iTru7_305_03,AGTTACGG,iTru5_109_F,GCTAAGGA,Feist_11661,JM-Metabolic__GN02748 +1,JM-Metabolic__GN02766,JM-Metabolic__GN02766,Feist_11661_P42_diluted,L17,iTru7_305_04,CGTACGAA,iTru5_110_F,GCCAGAAT,Feist_11661,JM-Metabolic__GN02766 +1,JM-Metabolic__GN02769,JM-Metabolic__GN02769,Feist_11661_P42_diluted,N17,iTru7_305_05,ACCACGAT,iTru5_111_F,TAAGTGGC,Feist_11661,JM-Metabolic__GN02769 +1,JM-Metabolic__GN02787,JM-Metabolic__GN02787,Feist_11661_P42_diluted,P17,iTru7_305_06,GATTACCG,iTru5_112_F,GCAATGAG,Feist_11661,JM-Metabolic__GN02787 +1,JM-Metabolic__GN03132,JM-Metabolic__GN03132,Feist_11661_P42,B19,iTru7_305_07,GAGATACG,iTru5_101_G,AACTGAGG,Feist_11661,JM-Metabolic__GN03132 +1,JM-Metabolic__GN03218,JM-Metabolic__GN03218,Feist_11661_P42_diluted,D19,iTru7_305_08,CGACGTTA,iTru5_102_G,AAGGAAGG,Feist_11661,JM-Metabolic__GN03218 +1,JM-Metabolic__GN03252,JM-Metabolic__GN03252,Feist_11661_P42_diluted,F19,iTru7_305_09,GAGATGTC,iTru5_103_G,AATGGTCG,Feist_11661,JM-Metabolic__GN03252 +1,JM-Metabolic__GN03409,JM-Metabolic__GN03409,Feist_11661_P42_diluted,H19,iTru7_305_10,GATTGGAG,iTru5_104_G,ACAGCAAG,Feist_11661,JM-Metabolic__GN03409 +1,JM-Metabolic__GN04014,JM-Metabolic__GN04014,Feist_11661_P42_diluted,J19,iTru7_305_11,GCAATTCG,iTru5_105_G,ACGTATGG,Feist_11661,JM-Metabolic__GN04014 +1,JM-Metabolic__GN04094,JM-Metabolic__GN04094,Feist_11661_P42_diluted,L19,iTru7_305_12,CGTCAATG,iTru5_106_G,ACTGCACT,Feist_11661,JM-Metabolic__GN04094 +1,JM-Metabolic__GN04255,JM-Metabolic__GN04255,Feist_11661_P42_diluted,N19,iTru7_401_01,ATGCACGA,iTru5_107_G,AGAGTCCA,Feist_11661,JM-Metabolic__GN04255 +1,JM-Metabolic__GN04306,JM-Metabolic__GN04306,Feist_11661_P42_diluted,P19,iTru7_401_02,ATCGCCAT,iTru5_108_G,AGCCTATC,Feist_11661,JM-Metabolic__GN04306 +1,JM-Metabolic__GN04428,JM-Metabolic__GN04428,Feist_11661_P42_diluted,B21,iTru7_401_03,TCTCGCAA,iTru5_109_G,AGGAACAC,Feist_11661,JM-Metabolic__GN04428 +1,JM-Metabolic__GN04488,JM-Metabolic__GN04488,Feist_11661_P42_diluted,D21,iTru7_401_04,ACGACAGA,iTru5_110_G,AGGTCTGT,Feist_11661,JM-Metabolic__GN04488 +1,JM-Metabolic__GN04540,JM-Metabolic__GN04540,Feist_11661_P42_diluted,F21,iTru7_401_05,TTACGGCT,iTru5_111_G,AGTATGCC,Feist_11661,JM-Metabolic__GN04540 +1,JM-Metabolic__GN04563,JM-Metabolic__GN04563,Feist_11661_P42_diluted,H21,iTru7_401_06,GAGGACTT,iTru5_112_G,AGTTCGCA,Feist_11661,JM-Metabolic__GN04563 +1,JM-Metabolic__GN04612,JM-Metabolic__GN04612,Feist_11661_P42_diluted,J21,iTru7_401_07,GGCATACT,iTru5_101_H,TGGAAGCA,Feist_11661,JM-Metabolic__GN04612 +1,JM-Metabolic__GN04665,JM-Metabolic__GN04665,Feist_11661_P42_diluted,L21,iTru7_401_08,CGTAGGTT,iTru5_102_H,GTCAGTCA,Feist_11661,JM-Metabolic__GN04665 +1,JM-Metabolic__GN04682,JM-Metabolic__GN04682,Feist_11661_P42_diluted,N21,iTru7_401_09,ATATGCGC,iTru5_103_H,GTAACCGA,Feist_11661,JM-Metabolic__GN04682 +1,JM-Metabolic__GN05002,JM-Metabolic__GN05002,Feist_11661_P42_diluted,P21,iTru7_401_10,GGATGTAG,iTru5_104_H,GTTATGGC,Feist_11661,JM-Metabolic__GN05002 +1,JM-Metabolic__GN05109,JM-Metabolic__GN05109,Feist_11661_P42_diluted,B23,iTru7_401_11,CCTGTCAT,iTru5_105_H,GTAAGCAC,Feist_11661,JM-Metabolic__GN05109 +1,JM-Metabolic__GN05128,JM-Metabolic__GN05128,Feist_11661_P42_diluted,D23,iTru7_401_12,TGCTCATG,iTru5_106_H,GGAATGTC,Feist_11661,JM-Metabolic__GN05128 +1,JM-Metabolic__GN05367,JM-Metabolic__GN05367,Feist_11661_P42_diluted,F23,iTru7_402_01,TGAAGACG,iTru5_107_H,GAGAAGGT,Feist_11661,JM-Metabolic__GN05367 +1,JM-Metabolic__GN05377,JM-Metabolic__GN05377,Feist_11661_P42_diluted,H23,iTru7_402_02,GTTACGCA,iTru5_108_H,GAGTAGAG,Feist_11661,JM-Metabolic__GN05377 +1,7A,7A,Gerwick_tubes,J23,iTru7_402_03,ACTCAGAC,iTru5_109_H,GCATTGGT,Gerwick,7A +1,8A,8A,Gerwick_tubes,L23,iTru7_402_04,GTCCACAT,iTru5_110_H,TCCAGCAA,Gerwick,8A +1,BLANK_42_12G,BLANK_42_12G,Feist_11661_P42,N23,iTru7_402_05,CGCTAGTA,iTru5_111_H,GAATCCGT,Feist_11661,BLANK.42.12G +1,BLANK_42_12H,BLANK_42_12H,Feist_11661_P42,P23,iTru7_402_06,GAATCCGA,iTru5_112_H,TACATCGG,Feist_11661,BLANK.42.12H +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326,Feist_11661_P43,B2,iTru7_402_07,GAGACGAT,iTru5_113_A,ATAACGCC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0326 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327,Feist_11661_P43,D2,iTru7_402_08,TAAGTGGC,iTru5_114_A,ATGACAGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0327 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328,Feist_11661_P43,F2,iTru7_402_09,ACTGAGGT,iTru5_115_A,CAACACAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0328 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329,Feist_11661_P43,H2,iTru7_402_10,TGTACCGT,iTru5_116_A,CACCAGTT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0329 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330,Feist_11661_P43,J2,iTru7_402_11,AGCAAGCA,iTru5_117_A,CAGAGTGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0330 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352,Feist_11661_P43,L2,iTru7_402_12,TCTCGTGT,iTru5_118_A,CCGATGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0352 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353,Feist_11661_P43,N2,iTru7_115_01,CAAGGTCT,iTru5_119_A,CCTTCCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0353 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354,Feist_11661_P43,P2,iTru7_115_02,TAGACGTG,iTru5_120_A,CGGTAATC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0354 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355,Feist_11661_P43,B4,iTru7_115_03,TGAGCTAG,iTru5_121_A,CTAGGTTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0355 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356,Feist_11661_P43,D4,iTru7_115_04,CTGACACA,iTru5_122_A,CTCGGTAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0356 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357,Feist_11661_P43,F4,iTru7_115_05,ACGGTCTT,iTru5_123_A,CTGTGGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0357 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364,Feist_11661_P43,H4,iTru7_115_06,GCTGTTGT,iTru5_124_A,GTACGATC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0364 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366,Feist_11661_P43,J4,iTru7_115_07,CACTAGCT,iTru5_113_B,TCTGTCGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0366 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367,Feist_11661_P43,L4,iTru7_115_08,TGGTACAG,iTru5_114_B,GAATGGCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0367 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368,Feist_11661_P43,N4,iTru7_115_09,AGCACTTC,iTru5_115_B,GTGTGTTC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0368 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369,Feist_11661_P43,P4,iTru7_115_10,GCATACAG,iTru5_116_B,GGTTGAAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0369 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370,Feist_11661_P43,B6,iTru7_115_11,CTTAGGAC,iTru5_117_B,GGCTCAAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0370 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371,Feist_11661_P43,D6,iTru7_211_01,GCTTCTTG,iTru5_118_B,TTCGCCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0371 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372,Feist_11661_P43,F6,iTru7_101_01,ACGTTACC,iTru5_119_B,GTCCTTGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0372 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373,Feist_11661_P43,H6,iTru7_101_02,CTGTGTTG,iTru5_120_B,TAACGTCG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0373 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374,Feist_11661_P43,J6,iTru7_101_03,TGAGGTGT,iTru5_121_B,GAGACCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0374 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375,Feist_11661_P43,L6,iTru7_101_04,GATCCATG,iTru5_122_B,GATCAAGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0375 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376,Feist_11661_P43,N6,iTru7_101_05,GCCTATCA,iTru5_123_B,GCAACCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0376 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377,Feist_11661_P43,P6,iTru7_101_06,AACAACCG,iTru5_124_B,AAGGAGAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0377 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378,Feist_11661_P43,B8,iTru7_101_07,ACTCGTTG,iTru5_113_C,ATCGGAGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0378 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380,Feist_11661_P43,D8,iTru7_101_08,CCTATGGT,iTru5_114_C,ATGCGCTT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0380 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381,Feist_11661_P43,F8,iTru7_101_09,TGTACACC,iTru5_115_C,CAACCGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0381 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382,Feist_11661_P43,H8,iTru7_101_10,GTATGCTG,iTru5_116_C,CACTTCAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0382 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383,Feist_11661_P43,J8,iTru7_101_11,TGATGTCC,iTru5_117_C,CAGCTAGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0383 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384,Feist_11661_P43,L8,iTru7_101_12,GTCCTTCT,iTru5_118_C,CCGTTATG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0384 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385,Feist_11661_P43,N8,iTru7_102_01,ATAAGGCG,iTru5_119_C,CGAACAAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0385 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386,Feist_11661_P43,P8,iTru7_102_02,CTTACCTG,iTru5_120_C,CGTAGATG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0386 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387,Feist_11661_P43,B10,iTru7_102_03,CGTTGCAA,iTru5_121_C,CTATGCCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0387 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388,Feist_11661_P43,D10,iTru7_102_04,GATTCAGC,iTru5_122_C,CTGATGAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0388 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389,Feist_11661_P43,F10,iTru7_102_05,TCACGTTC,iTru5_123_C,CTTCCTTC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0389 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390,Feist_11661_P43,H10,iTru7_102_06,TGTGCGTT,iTru5_124_C,GTCTCATC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0390 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391,Feist_11661_P43,J10,iTru7_102_07,TAGTTGCG,iTru5_113_D,GCGCATAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0391 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392,Feist_11661_P43,L10,iTru7_102_08,AAGAGCCA,iTru5_114_D,GAAGATCC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0392 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393,Feist_11661_P43,N10,iTru7_102_09,ACAGCTCA,iTru5_115_D,GTTGGCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0393 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394,Feist_11661_P43,P10,iTru7_102_10,GTTAAGGC,iTru5_116_D,GTGAATGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0394 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395,Feist_11661_P43,B12,iTru7_102_11,AAGCCACA,iTru5_117_D,GTATCGAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0395 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396,Feist_11661_P43,D12,iTru7_102_12,ACACGGTT,iTru5_118_D,TGCAAGAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0396 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397,Feist_11661_P43,F12,iTru7_103_01,CAGCGATT,iTru5_119_D,GAGTGTGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0397 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398,Feist_11661_P43,H12,iTru7_103_02,TAGTGACC,iTru5_120_D,TAAGCGCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0398 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399,Feist_11661_P43,J12,iTru7_103_03,CGAGACTA,iTru5_121_D,TAGCAGGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0399 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400,Feist_11661_P43,L12,iTru7_103_04,GACATGGT,iTru5_122_D,GACTACGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0400 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401,Feist_11661_P43,N12,iTru7_103_05,GCATGTCT,iTru5_123_D,GACGTCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0401 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402,Feist_11661_P43,P12,iTru7_103_06,ACTCCATC,iTru5_124_D,AAGAGGCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0402 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403,Feist_11661_P43,B14,iTru7_103_07,TGTGACTG,iTru5_113_E,ATCGTCTC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0403 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404,Feist_11661_P43,D14,iTru7_103_08,CGAAGAAC,iTru5_114_E,ATGGCGAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0404 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405,Feist_11661_P43,F14,iTru7_103_09,GGTGTCTT,iTru5_115_E,CAAGAAGC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0405 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406,Feist_11661_P43,H14,iTru7_103_10,AAGAAGGC,iTru5_116_E,CAGAACTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0406 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407,Feist_11661_P43,J14,iTru7_103_11,AGGTTCGA,iTru5_117_E,CAGGTAAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0407 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408,Feist_11661_P43,L14,iTru7_103_12,CATGTTCC,iTru5_118_E,CCTACCTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0408 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409,Feist_11661_P43,N14,iTru7_104_01,GTGCCATA,iTru5_119_E,CGAAGTCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0409 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417,Feist_11661_P43,P14,iTru7_104_02,CCTTGTAG,iTru5_120_E,CGTCTTCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0417 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418,Feist_11661_P43,B16,iTru7_104_03,GCTGGATT,iTru5_121_E,CTCAAGCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0418 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419,Feist_11661_P43,D16,iTru7_104_04,TAACGAGG,iTru5_122_E,CTGCCATA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0419 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420,Feist_11661_P43,F16,iTru7_104_05,ATGGTTGC,iTru5_123_E,CTTGCTAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0420 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421,Feist_11661_P43,H16,iTru7_104_06,CCTATACC,iTru5_124_E,GTCTGCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0421 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473,Feist_11661_P43,J16,iTru7_104_07,TTAGGTCG,iTru5_113_F,GCTACTCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0473 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474,Feist_11661_P43,L16,iTru7_104_08,GCAAGATC,iTru5_114_F,TACAGAGC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0474 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483,Feist_11661_P43,N16,iTru7_104_09,AGAGCCTT,iTru5_115_F,GGTCGTAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0483 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484,Feist_11661_P43,P16,iTru7_104_10,GCAATGGA,iTru5_116_F,GTCGTTAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0484 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485,Feist_11661_P43,B18,iTru7_104_11,CTGGAGTA,iTru5_117_F,TTCACGGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0485 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486,Feist_11661_P43,D18,iTru7_104_12,GAACATCG,iTru5_118_F,TGCTTGCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0486 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516,Feist_11661_P43,F18,iTru7_105_01,GCACAACT,iTru5_119_F,TCTTACGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0516 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517,Feist_11661_P43,H18,iTru7_105_02,TTCTCTCG,iTru5_120_F,TCCTCATG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0517 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518,Feist_11661_P43,J18,iTru7_105_03,AACGGTCA,iTru5_121_F,GATGTCGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0518 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519,Feist_11661_P43,L18,iTru7_105_04,ACAGACCT,iTru5_122_F,GAAGTGCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0519 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520,Feist_11661_P43,N18,iTru7_105_05,TCTCTTCC,iTru5_123_F,TCACTCGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0520 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521,Feist_11661_P43,P18,iTru7_105_06,AGTGTTGG,iTru5_124_F,ACGCAGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0521 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522,Feist_11661_P43,B20,iTru7_105_07,TGGCATGT,iTru5_113_G,ATCTCCTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0522 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523,Feist_11661_P43,D20,iTru7_105_08,AGAAGCGT,iTru5_114_G,ATGTGGAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0523 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524,Feist_11661_P43,F20,iTru7_105_09,AGCGGAAT,iTru5_115_G,CAAGCCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0524 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525,Feist_11661_P43,H20,iTru7_105_10,TAACCGGT,iTru5_116_G,CAGACGTT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0525 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624,Feist_11661_P43,J20,iTru7_105_11,CATGGAAC,iTru5_117_G,CATACTCG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R08624 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704,Feist_11661_P43,L20,iTru7_105_12,ATGGTCCA,iTru5_118_G,CCTGTCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R08704 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727,JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727,Feist_11661_P43,N20,iTru7_106_01,CTTCTGAG,iTru5_119_G,CGAGTTAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R10727 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044,Feist_11661_P43,P20,iTru7_106_02,AACCGAAG,iTru5_120_G,CTAACCTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11044 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078,Feist_11661_P43,B22,iTru7_106_03,TTCGTACC,iTru5_121_G,CTCCTAGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11078 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101,Feist_11661_P43,D22,iTru7_106_04,CTGTTAGG,iTru5_122_G,CTGTACCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11101 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102,Feist_11661_P43,F22,iTru7_106_05,CACAAGTC,iTru5_123_G,GCTACAAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11102 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103,Feist_11661_P43,H22,iTru7_106_06,TCTTGACG,iTru5_124_G,GTTCTTCG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11103 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135,Feist_11661_P43,J22,iTru7_106_07,CGTCTTGT,iTru5_113_H,GAGAGTAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11135 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153,Feist_11661_P43,L22,iTru7_106_08,CGTGATCA,iTru5_114_H,GACACAGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11153 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154,Feist_11661_P43,N22,iTru7_106_09,CCAAGTTG,iTru5_115_H,TTGCTTGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11154 +1,JM-Metabolic__GN02424,JM-Metabolic__GN02424,Feist_11661_P43,P22,iTru7_106_10,GTACCTTG,iTru5_116_H,GTAGTACC,Feist_11661,JM-Metabolic__GN02424 +1,JM-Metabolic__GN02446,JM-Metabolic__GN02446,Feist_11661_P43,B24,iTru7_106_11,GACTATGC,iTru5_117_H,TTCGGCTA,Feist_11661,JM-Metabolic__GN02446 +1,JM-Metabolic__GN02449,JM-Metabolic__GN02449,Feist_11661_P43,D24,iTru7_106_12,TGGATCAC,iTru5_118_H,TGCACTTG,Feist_11661,JM-Metabolic__GN02449 +1,JM-Metabolic__GN02487,JM-Metabolic__GN02487,Feist_11661_P43_diluted,F24,iTru7_107_01,CTCTGGTT,iTru5_119_H,TAGAACGC,Feist_11661,JM-Metabolic__GN02487 +1,JM-Metabolic__GN02501,JM-Metabolic__GN02501,Feist_11661_P43,H24,iTru7_107_02,GTTCATGG,iTru5_120_H,GATTGTCC,Feist_11661,JM-Metabolic__GN02501 +1,ISB,ISB,Gerwick_tubes,J24,iTru7_107_03,GCTGTAAG,iTru5_121_H,GATGCTAC,Gerwick,ISB +1,GFR,GFR,Gerwick_tubes,L24,iTru7_107_04,GTCGAAGA,iTru5_122_H,GAACGGTT,Gerwick,GFR +1,BLANK_43_12G,BLANK_43_12G,Feist_11661_P43,N24,iTru7_107_05,GAGCTCAA,iTru5_123_H,CTCTTGTC,Feist_11661,BLANK.43.12G +1,BLANK_43_12H,BLANK_43_12H,Feist_11661_P43,P24,iTru7_107_06,TGAACCTG,iTru5_124_H,AACGCCTT,Feist_11661,BLANK.43.12H +1,RMA_KHP_rpoS_Mage_Q97D,RMA_KHP_rpoS_Mage_Q97D,,,12,CTTGTAAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97D +1,RMA_KHP_rpoS_Mage_Q97L,RMA_KHP_rpoS_Mage_Q97L,,,13,AGTCAAAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97L +1,RMA_KHP_rpoS_Mage_Q97N,RMA_KHP_rpoS_Mage_Q97N,,,14,AGTTCCAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97N +1,RMA_KHP_rpoS_Mage_Q97E,RMA_KHP_rpoS_Mage_Q97E,,,15,ATGTCAAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97E +1,JBI_KHP_HGL_021,JBI_KHP_HGL_021,,,1,ATCACGAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_021 +1,JBI_KHP_HGL_022,JBI_KHP_HGL_022,,,2,CGATGTAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_022 +1,JBI_KHP_HGL_023,JBI_KHP_HGL_023,,,3,TTAGGCAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_023 +1,JBI_KHP_HGL_024,JBI_KHP_HGL_024,,,4,TGACCAAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_024 +1,JBI_KHP_HGL_025,JBI_KHP_HGL_025,,,5,ACAGTGAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_025 +1,JBI_KHP_HGL_026,JBI_KHP_HGL_026,,,6,GCCAATAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_026 +1,JBI_KHP_HGL_027,JBI_KHP_HGL_027,,,7,CAGATCAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_027 +1,JBI_KHP_HGL_028_Amitesh_soxR,JBI_KHP_HGL_028_Amitesh_soxR,,,8,ACTTGAAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_028_Amitesh_soxR +1,JBI_KHP_HGL_029_Amitesh_oxyR,JBI_KHP_HGL_029_Amitesh_oxyR,,,9,GATCAGAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_029_Amitesh_oxyR +1,JBI_KHP_HGL_030_Amitesh_soxR_oxyR,JBI_KHP_HGL_030_Amitesh_soxR_oxyR,,,10,TAGCTTAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_030_Amitesh_soxR_oxyR +1,JBI_KHP_HGL_031_Amitesh_rpoS,JBI_KHP_HGL_031_Amitesh_rpoS,,,11,GGCTACAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_031_Amitesh_rpoS +1,BLANK1_1A,BLANK1_1A,NYU_BMS_Melanoma_13059_P1,A1,iTru7_107_09,GCCTTGTT,iTru5_01_A,ACCGACAA,NYU_BMS_Melanoma_13059,BLANK1.1A +1,BLANK1_1B,BLANK1_1B,NYU_BMS_Melanoma_13059_P1,C1,iTru7_107_10,AACTTGCC,iTru5_02_A,CTTCGCAA,NYU_BMS_Melanoma_13059,BLANK1.1B +1,BLANK1_1C,BLANK1_1C,NYU_BMS_Melanoma_13059_P1,E1,iTru7_107_11,CAATGTGG,iTru5_03_A,AACACCAC,NYU_BMS_Melanoma_13059,BLANK1.1C +1,BLANK1_1D,BLANK1_1D,NYU_BMS_Melanoma_13059_P1,G1,iTru7_107_12,AAGGCTGA,iTru5_04_A,CGTATCTC,NYU_BMS_Melanoma_13059,BLANK1.1D +1,BLANK1_1E,BLANK1_1E,NYU_BMS_Melanoma_13059_P1,I1,iTru7_108_01,TTACCGAG,iTru5_05_A,GGTACGAA,NYU_BMS_Melanoma_13059,BLANK1.1E +1,BLANK1_1F,BLANK1_1F,NYU_BMS_Melanoma_13059_P1,K1,iTru7_108_02,GTCCTAAG,iTru5_06_A,CGATCGAT,NYU_BMS_Melanoma_13059,BLANK1.1F +1,BLANK1_1G,BLANK1_1G,NYU_BMS_Melanoma_13059_P1,M1,iTru7_108_03,GAAGGTTC,iTru5_07_A,AAGACACC,NYU_BMS_Melanoma_13059,BLANK1.1G +1,BLANK1_1H,BLANK1_1H,NYU_BMS_Melanoma_13059_P1,O1,iTru7_108_04,GAAGAGGT,iTru5_08_A,CATCTGCT,NYU_BMS_Melanoma_13059,BLANK1.1H +1,AP581451B02,AP581451B02,NYU_BMS_Melanoma_13059_P1,A3,iTru7_108_05,TCTGAGAG,iTru5_09_A,CTCTCAGA,NYU_BMS_Melanoma_13059,AP581451B02 +1,EP256645B01,EP256645B01,NYU_BMS_Melanoma_13059_P1,C3,iTru7_108_06,ACCGCATA,iTru5_10_A,TCGTCTGA,NYU_BMS_Melanoma_13059,EP256645B01 +1,EP112567B02,EP112567B02,NYU_BMS_Melanoma_13059_P1,E3,iTru7_108_07,GAAGTACC,iTru5_11_A,CAATAGCC,NYU_BMS_Melanoma_13059,EP112567B02 +1,EP337425B01,EP337425B01,NYU_BMS_Melanoma_13059_P1,G3,iTru7_108_08,CAGGTATC,iTru5_12_A,CATTCGTC,NYU_BMS_Melanoma_13059,EP337425B01 +1,LP127890A01,LP127890A01,NYU_BMS_Melanoma_13059_P1,I3,iTru7_108_09,TCTCTAGG,iTru5_01_B,AGTGGCAA,NYU_BMS_Melanoma_13059,LP127890A01 +1,EP159692B04,EP159692B04,NYU_BMS_Melanoma_13059_P1,K3,iTru7_108_10,AAGCACTG,iTru5_02_B,GTGGTATG,NYU_BMS_Melanoma_13059,EP159692B04 +1,EP987683A01,EP987683A01,NYU_BMS_Melanoma_13059_P1,M3,iTru7_108_11,CCAAGCAA,iTru5_03_B,TGAGCTGT,NYU_BMS_Melanoma_13059,EP987683A01 +1,AP959450A03,AP959450A03,NYU_BMS_Melanoma_13059_P1,O3,iTru7_108_12,TGTTCGAG,iTru5_04_B,CGTCAAGA,NYU_BMS_Melanoma_13059,AP959450A03 +1,SP464350A04,SP464350A04,NYU_BMS_Melanoma_13059_P1,A5,iTru7_109_01,CTCGTCTT,iTru5_05_B,AAGCATCG,NYU_BMS_Melanoma_13059,SP464350A04 +1,C9,C9,NYU_BMS_Melanoma_13059_P1,C5,iTru7_109_02,CGAACTGT,iTru5_06_B,TACTCCAG,NYU_BMS_Melanoma_13059,C9 +1,ep256643b01,ep256643b01,NYU_BMS_Melanoma_13059_P1,E5,iTru7_109_03,CATTCGGT,iTru5_07_B,GATACCTG,NYU_BMS_Melanoma_13059,ep256643b01 +1,EP121011B01,EP121011B01,NYU_BMS_Melanoma_13059_P1,G5,iTru7_109_04,TCGGTTAC,iTru5_08_B,ACCTCTTC,NYU_BMS_Melanoma_13059,EP121011B01 +1,AP616837B04,AP616837B04,NYU_BMS_Melanoma_13059_P1,I5,iTru7_109_05,AAGTCGAG,iTru5_09_B,ACGGACTT,NYU_BMS_Melanoma_13059,AP616837B04 +1,SP506933A04,SP506933A04,NYU_BMS_Melanoma_13059_P1,K5,iTru7_109_06,TATCGGTC,iTru5_10_B,CATGTGTG,NYU_BMS_Melanoma_13059,SP506933A04 +1,EP159695B01,EP159695B01,NYU_BMS_Melanoma_13059_P1,M5,iTru7_109_07,TATTCGCC,iTru5_11_B,TGCCTCAA,NYU_BMS_Melanoma_13059,EP159695B01 +1,EP256644B01,EP256644B01,NYU_BMS_Melanoma_13059_P1,O5,iTru7_109_08,GTATTGGC,iTru5_12_B,ATCTGACC,NYU_BMS_Melanoma_13059,EP256644B01 +1,SP511289A02,SP511289A02,NYU_BMS_Melanoma_13059_P1,A7,iTru7_109_09,AGTCGCTT,iTru5_01_C,CACAGACT,NYU_BMS_Melanoma_13059,SP511289A02 +1,EP305735B04,EP305735B04,NYU_BMS_Melanoma_13059_P1,C7,iTru7_109_10,TGGCACTA,iTru5_02_C,CACTGTAG,NYU_BMS_Melanoma_13059,EP305735B04 +1,SP415030A01,SP415030A01,NYU_BMS_Melanoma_13059_P1,E7,iTru7_109_11,GGTTGTCA,iTru5_03_C,CACAGGAA,NYU_BMS_Melanoma_13059,SP415030A01 +1,AP549681B02,AP549681B02,NYU_BMS_Melanoma_13059_P1,G7,iTru7_109_12,AACCTCCT,iTru5_04_C,CCATGAAC,NYU_BMS_Melanoma_13059,AP549681B02 +1,AP549678B01,AP549678B01,NYU_BMS_Melanoma_13059_P1,I7,iTru7_110_01,ATGACCAG,iTru5_05_C,GCCAATAC,NYU_BMS_Melanoma_13059,AP549678B01 +1,EP260544B04,EP260544B04,NYU_BMS_Melanoma_13059_P1,K7,iTru7_110_02,AACCGTTC,iTru5_06_C,AGCTACCA,NYU_BMS_Melanoma_13059,EP260544B04 +1,EP202452B01,EP202452B01,NYU_BMS_Melanoma_13059_P1,M7,iTru7_110_03,TCCAATCG,iTru5_07_C,AACCGAAC,NYU_BMS_Melanoma_13059,EP202452B01 +1,EP282276B04,EP282276B04,NYU_BMS_Melanoma_13059_P1,O7,iTru7_110_04,CTGCACTT,iTru5_08_C,ATCGCAAC,NYU_BMS_Melanoma_13059,EP282276B04 +1,SP531696A04,SP531696A04,NYU_BMS_Melanoma_13059_P1,A9,iTru7_110_05,CGCTTAAC,iTru5_09_C,GTTGCTGT,NYU_BMS_Melanoma_13059,SP531696A04 +1,SP515443A04,SP515443A04,NYU_BMS_Melanoma_13059_P1,C9,iTru7_110_06,CACCACTA,iTru5_10_C,TCTAGTCC,NYU_BMS_Melanoma_13059,SP515443A04 +1,SP515763A04,SP515763A04,NYU_BMS_Melanoma_13059_P1,E9,iTru7_110_07,ACAGCAAC,iTru5_11_C,GACGAACT,NYU_BMS_Melanoma_13059,SP515763A04 +1,EP184255B04,EP184255B04,NYU_BMS_Melanoma_13059_P1,G9,iTru7_110_08,GGAAGGAT,iTru5_12_C,TTCGTACG,NYU_BMS_Melanoma_13059,EP184255B04 +1,SP503615A02,SP503615A02,NYU_BMS_Melanoma_13059_P1,I9,iTru7_110_09,GGCGTTAT,iTru5_01_D,CGACACTT,NYU_BMS_Melanoma_13059,SP503615A02 +1,EP260543B04,EP260543B04,NYU_BMS_Melanoma_13059_P1,K9,iTru7_110_10,CTGTTGAC,iTru5_02_D,AGACGCTA,NYU_BMS_Melanoma_13059,EP260543B04 +1,EP768748A04,EP768748A04,NYU_BMS_Melanoma_13059_P1,M9,iTru7_110_11,GTCATCGA,iTru5_03_D,TGACAACC,NYU_BMS_Melanoma_13059,EP768748A04 +1,AP309872B03,AP309872B03,NYU_BMS_Melanoma_13059_P1,O9,iTru7_110_12,TGACTTCG,iTru5_04_D,GGTACTTC,NYU_BMS_Melanoma_13059,AP309872B03 +1,AP568785B04,AP568785B04,NYU_BMS_Melanoma_13059_P1,A11,iTru7_111_01,CGATAGAG,iTru5_05_D,CTGTATGC,NYU_BMS_Melanoma_13059,AP568785B04 +1,EP721390A04,EP721390A04,NYU_BMS_Melanoma_13059_P1,C11,iTru7_111_02,TTCGTTGG,iTru5_06_D,TCGACAAG,NYU_BMS_Melanoma_13059,EP721390A04 +1,EP940013A01,EP940013A01,NYU_BMS_Melanoma_13059_P1,E11,iTru7_111_03,TGGAGAGT,iTru5_07_D,GCTGAATC,NYU_BMS_Melanoma_13059,EP940013A01 +1,EP291979B04,EP291979B04,NYU_BMS_Melanoma_13059_P1,G11,iTru7_111_04,TCAGACGA,iTru5_08_D,AGTTGTGC,NYU_BMS_Melanoma_13059,EP291979B04 +1,EP182065B04,EP182065B04,NYU_BMS_Melanoma_13059_P1,I11,iTru7_111_05,GACGAATG,iTru5_09_D,TGTCGACT,NYU_BMS_Melanoma_13059,EP182065B04 +1,EP128904B02,EP128904B02,NYU_BMS_Melanoma_13059_P1,K11,iTru7_111_06,CATGAGGA,iTru5_10_D,AAGGCTCT,NYU_BMS_Melanoma_13059,EP128904B02 +1,EP915769A04,EP915769A04,NYU_BMS_Melanoma_13059_P1,M11,iTru7_111_07,CGGTTGTT,iTru5_11_D,CCTAACAG,NYU_BMS_Melanoma_13059,EP915769A04 +1,SP464352A03,SP464352A03,NYU_BMS_Melanoma_13059_P1,O11,iTru7_111_08,TCCGTATG,iTru5_12_D,AAGACGAG,NYU_BMS_Melanoma_13059,SP464352A03 +1,SP365864A04,SP365864A04,NYU_BMS_Melanoma_13059_P1,A13,iTru7_111_09,TGTGGTAC,iTru5_01_E,GACTTGTG,NYU_BMS_Melanoma_13059,SP365864A04 +1,SP511294A04,SP511294A04,NYU_BMS_Melanoma_13059_P1,C13,iTru7_111_10,AGAACGAG,iTru5_02_E,CAACTCCA,NYU_BMS_Melanoma_13059,SP511294A04 +1,EP061002B01,EP061002B01,NYU_BMS_Melanoma_13059_P1,E13,iTru7_111_11,CTTCGTTC,iTru5_03_E,TGTTCCGT,NYU_BMS_Melanoma_13059,EP061002B01 +1,SP410793A01,SP410793A01,NYU_BMS_Melanoma_13059_P1,G13,iTru7_111_12,CCAATAGG,iTru5_04_E,ACCGCTAT,NYU_BMS_Melanoma_13059,SP410793A01 +1,SP232077A04,SP232077A04,NYU_BMS_Melanoma_13059_P1,I13,iTru7_112_01,ACCATCCA,iTru5_05_E,CTTAGGAC,NYU_BMS_Melanoma_13059,SP232077A04 +1,EP128910B01,EP128910B01,NYU_BMS_Melanoma_13059_P1,K13,iTru7_112_02,CACACATG,iTru5_06_E,TATGACCG,NYU_BMS_Melanoma_13059,EP128910B01 +1,AP531397B04,AP531397B04,NYU_BMS_Melanoma_13059_P1,M13,iTru7_112_03,CTTGTCGA,iTru5_07_E,AGCTAGTG,NYU_BMS_Melanoma_13059,AP531397B04 +1,EP043583B01,EP043583B01,NYU_BMS_Melanoma_13059_P1,O13,iTru7_112_04,AGTCTCAC,iTru5_08_E,GAACGAAG,NYU_BMS_Melanoma_13059,EP043583B01 +1,EP230245B01,EP230245B01,NYU_BMS_Melanoma_13059_P1,A15,iTru7_112_05,AGTTGGCT,iTru5_09_E,CGTCTAAC,NYU_BMS_Melanoma_13059,EP230245B01 +1,EP606652B04,EP606652B04,NYU_BMS_Melanoma_13059_P1,C15,iTru7_112_06,CCGGAATT,iTru5_10_E,AACCAGAG,NYU_BMS_Melanoma_13059,EP606652B04 +1,EP207041B01,EP207041B01,NYU_BMS_Melanoma_13059_P1,E15,iTru7_112_07,CAGTGAAG,iTru5_11_E,CGCCTTAT,NYU_BMS_Melanoma_13059,EP207041B01 +1,EP727972A04,EP727972A04,NYU_BMS_Melanoma_13059_P1,G15,iTru7_112_08,CCTACTGA,iTru5_12_E,CTCGTTCT,NYU_BMS_Melanoma_13059,EP727972A04 +1,EP291980B04,EP291980B04,NYU_BMS_Melanoma_13059_P1,I15,iTru7_112_09,TGTGAAGC,iTru5_01_F,GTGAGACT,NYU_BMS_Melanoma_13059,EP291980B04 +1,EP087938B02,EP087938B02,NYU_BMS_Melanoma_13059_P1,K15,iTru7_112_10,GTCTGATC,iTru5_02_F,AACACGCT,NYU_BMS_Melanoma_13059,EP087938B02 +1,SP471496A04,SP471496A04,NYU_BMS_Melanoma_13059_P1,M15,iTru7_112_11,TTCAGGAG,iTru5_03_F,CCTAGAGA,NYU_BMS_Melanoma_13059,SP471496A04 +1,SP573823A04,SP573823A04,NYU_BMS_Melanoma_13059_P1,O15,iTru7_112_12,ACGATGAC,iTru5_04_F,TTCCAGGT,NYU_BMS_Melanoma_13059,SP573823A04 +1,EP393718B01,EP393718B01,NYU_BMS_Melanoma_13059_P1,A17,iTru7_113_01,CGTTATGC,iTru5_05_F,TCAGCCTT,NYU_BMS_Melanoma_13059,EP393718B01 +1,SP612496A01,SP612496A01,NYU_BMS_Melanoma_13059_P1,C17,iTru7_113_02,GATACTGG,iTru5_06_F,AGCCAACT,NYU_BMS_Melanoma_13059,SP612496A01 +1,EP032410B02,EP032410B02,NYU_BMS_Melanoma_13059_P1,E17,iTru7_113_03,CTACTTGG,iTru5_07_F,CTAGCTCA,NYU_BMS_Melanoma_13059,EP032410B02 +1,EP073216B01,EP073216B01,NYU_BMS_Melanoma_13059_P1,G17,iTru7_113_04,CATACCAC,iTru5_08_F,GGAAGAGA,NYU_BMS_Melanoma_13059,EP073216B01 +1,EP410046B01,EP410046B01,NYU_BMS_Melanoma_13059_P1,I17,iTru7_113_05,ACATTGCG,iTru5_09_F,AACACTGG,NYU_BMS_Melanoma_13059,EP410046B01 +1,SP561451A04,SP561451A04,NYU_BMS_Melanoma_13059_P1,K17,iTru7_113_06,TGATCGGA,iTru5_10_F,ACTATCGC,NYU_BMS_Melanoma_13059,SP561451A04 +1,EP320438B01,EP320438B01,NYU_BMS_Melanoma_13059_P1,M17,iTru7_113_07,AAGTGTCG,iTru5_11_F,ACAACAGC,NYU_BMS_Melanoma_13059,EP320438B01 +1,SP612495A04,SP612495A04,NYU_BMS_Melanoma_13059_P1,O17,iTru7_113_08,GAACGCTT,iTru5_12_F,TGTGGCTT,NYU_BMS_Melanoma_13059,SP612495A04 +1,EP446604B03,EP446604B03,NYU_BMS_Melanoma_13059_P1,A19,iTru7_113_09,TCAAGGAC,iTru5_01_G,GTTCCATG,NYU_BMS_Melanoma_13059,EP446604B03 +1,EP446602B01,EP446602B01,NYU_BMS_Melanoma_13059_P1,C19,iTru7_113_10,TCAACTGG,iTru5_02_G,TGGATGGT,NYU_BMS_Melanoma_13059,EP446602B01 +1,EP182243B02,EP182243B02,NYU_BMS_Melanoma_13059_P1,E19,iTru7_113_11,GGTTGATG,iTru5_03_G,GCATAACG,NYU_BMS_Melanoma_13059,EP182243B02 +1,EP333541B04,EP333541B04,NYU_BMS_Melanoma_13059_P1,G19,iTru7_113_12,AAGGACAC,iTru5_04_G,TCGAACCT,NYU_BMS_Melanoma_13059,EP333541B04 +1,EP238034B01,EP238034B01,NYU_BMS_Melanoma_13059_P1,I19,iTru7_114_01,TTGATCCG,iTru5_05_G,ACATGCCA,NYU_BMS_Melanoma_13059,EP238034B01 +1,AP298002B02,AP298002B02,NYU_BMS_Melanoma_13059_P1,K19,iTru7_114_02,GGTGATTC,iTru5_06_G,GATCTTGC,NYU_BMS_Melanoma_13059,AP298002B02 +1,EP455759B04,EP455759B04,NYU_BMS_Melanoma_13059_P1,M19,iTru7_114_03,GATTGCTC,iTru5_07_G,GTTAAGCG,NYU_BMS_Melanoma_13059,EP455759B04 +1,EP207042B04,EP207042B04,NYU_BMS_Melanoma_13059_P1,O19,iTru7_114_04,ACCTGGAA,iTru5_08_G,GTCATCGT,NYU_BMS_Melanoma_13059,EP207042B04 +1,LP128479A01,LP128479A01,NYU_BMS_Melanoma_13059_P1,A21,iTru7_114_05,CATCTACG,iTru5_09_G,TCAGACAC,NYU_BMS_Melanoma_13059,LP128479A01 +1,LP128476A01,LP128476A01,NYU_BMS_Melanoma_13059_P1,C21,iTru7_114_06,CCGTATCT,iTru5_10_G,GTCCTAAG,NYU_BMS_Melanoma_13059,LP128476A01 +1,EP316863B03,EP316863B03,NYU_BMS_Melanoma_13059_P1,E21,iTru7_114_07,CGGAATAC,iTru5_11_G,AGACCTTG,NYU_BMS_Melanoma_13059,EP316863B03 +1,C20,C20,NYU_BMS_Melanoma_13059_P1,G21,iTru7_114_08,CTCCTAGA,iTru5_12_G,AGACATGC,NYU_BMS_Melanoma_13059,C20 +1,lp127896a01,lp127896a01,NYU_BMS_Melanoma_13059_P1,I21,iTru7_114_09,TGGTAGCT,iTru5_01_H,TAGCTGAG,NYU_BMS_Melanoma_13059,lp127896a01 +1,SP491907A02,SP491907A02,NYU_BMS_Melanoma_13059_P1,K21,iTru7_114_10,TCGAAGGT,iTru5_02_H,TTCGAAGC,NYU_BMS_Melanoma_13059,SP491907A02 +1,EP182060B03,EP182060B03,NYU_BMS_Melanoma_13059_P1,M21,iTru7_114_11,ACATAGGC,iTru5_03_H,CAGTGCTT,NYU_BMS_Melanoma_13059,EP182060B03 +1,EP422407B01,EP422407B01,NYU_BMS_Melanoma_13059_P1,O21,iTru7_114_12,CTCAGAGT,iTru5_04_H,TAGTGCCA,NYU_BMS_Melanoma_13059,EP422407B01 +1,SP573859A04,SP573859A04,NYU_BMS_Melanoma_13059_P1,A23,iTru7_201_01,CTTGGATG,iTru5_05_H,GATGGAGT,NYU_BMS_Melanoma_13059,SP573859A04 +1,SP584547A02,SP584547A02,NYU_BMS_Melanoma_13059_P1,C23,iTru7_201_02,CAGTTGGA,iTru5_06_H,CCTCGTTA,NYU_BMS_Melanoma_13059,SP584547A02 +1,EP182346B04,EP182346B04,NYU_BMS_Melanoma_13059_P1,E23,iTru7_201_03,GATAGGCT,iTru5_07_H,CGATTGGA,NYU_BMS_Melanoma_13059,EP182346B04 +1,AP668631B04,AP668631B04,NYU_BMS_Melanoma_13059_P1,G23,iTru7_201_04,TTGACAGG,iTru5_08_H,CCAACGAA,NYU_BMS_Melanoma_13059,AP668631B04 +1,EP451428B04,EP451428B04,NYU_BMS_Melanoma_13059_P1,I23,iTru7_201_05,AGAATGCC,iTru5_09_H,AGAAGGAC,NYU_BMS_Melanoma_13059,EP451428B04 +1,LP128538A01,LP128538A01,NYU_BMS_Melanoma_13059_P1,K23,iTru7_201_06,CTACATCC,iTru5_10_H,TGACCGTT,NYU_BMS_Melanoma_13059,LP128538A01 +1,SP490298A02,SP490298A02,NYU_BMS_Melanoma_13059_P1,M23,iTru7_201_07,TCATGGTG,iTru5_11_H,GCGTTAGA,NYU_BMS_Melanoma_13059,SP490298A02 +1,SP573860A01,SP573860A01,NYU_BMS_Melanoma_13059_P1,O23,iTru7_201_08,TACACGCT,iTru5_12_H,TCTAGGAG,NYU_BMS_Melanoma_13059,SP573860A01 +1,EP032412B02,EP032412B02,NYU_BMS_Melanoma_13059_P2,A2,iTru7_201_09,TACGGTTG,iTru5_13_A,GGTATAGG,NYU_BMS_Melanoma_13059,EP032412B02 +1,EP163771B01,EP163771B01,NYU_BMS_Melanoma_13059_P2,C2,iTru7_201_10,GGATACCA,iTru5_14_A,TCCGATCA,NYU_BMS_Melanoma_13059,EP163771B01 +1,LP169879A01,LP169879A01,NYU_BMS_Melanoma_13059_P2,E2,iTru7_201_11,TCGACATC,iTru5_15_A,CGACCTAA,NYU_BMS_Melanoma_13059,LP169879A01 +1,EP729433A02,EP729433A02,NYU_BMS_Melanoma_13059_P2,G2,iTru7_201_12,GTTGTAGC,iTru5_16_A,GACATCTC,NYU_BMS_Melanoma_13059,EP729433A02 +1,EP447940B04,EP447940B04,NYU_BMS_Melanoma_13059_P2,I2,iTru7_202_01,ATACGACC,iTru5_17_A,CCAGTATC,NYU_BMS_Melanoma_13059,EP447940B04 +1,SP584551A08,SP584551A08,NYU_BMS_Melanoma_13059_P2,K2,iTru7_202_02,TTCCAAGG,iTru5_18_A,ACGCTTCT,NYU_BMS_Melanoma_13059,SP584551A08 +1,EP216516B04,EP216516B04,NYU_BMS_Melanoma_13059_P2,M2,iTru7_202_03,TTGCAGAC,iTru5_19_A,AACGCACA,NYU_BMS_Melanoma_13059,EP216516B04 +1,EP023808B02,EP023808B02,NYU_BMS_Melanoma_13059_P2,O2,iTru7_202_04,TGCCATTC,iTru5_20_A,TGATCACG,NYU_BMS_Melanoma_13059,EP023808B02 +1,BLANK2_2A,BLANK2_2A,NYU_BMS_Melanoma_13059_P2,A4,iTru7_202_05,GATGTGTG,iTru5_21_A,GCGTATCA,NYU_BMS_Melanoma_13059,BLANK2.2A +1,BLANK2_2B,BLANK2_2B,NYU_BMS_Melanoma_13059_P2,C4,iTru7_202_06,ACTCTCGA,iTru5_22_A,GTGTCCTT,NYU_BMS_Melanoma_13059,BLANK2.2B +1,BLANK2_2C,BLANK2_2C,NYU_BMS_Melanoma_13059_P2,E4,iTru7_202_07,GAGTCTCT,iTru5_23_A,GGTAACGT,NYU_BMS_Melanoma_13059,BLANK2.2C +1,BLANK2_2D,BLANK2_2D,NYU_BMS_Melanoma_13059_P2,G4,iTru7_202_08,CAACACCT,iTru5_24_A,CGAGAGAA,NYU_BMS_Melanoma_13059,BLANK2.2D +1,BLANK2_2E,BLANK2_2E,NYU_BMS_Melanoma_13059_P2,I4,iTru7_202_09,CAGTCTTC,iTru5_13_B,CATTGACG,NYU_BMS_Melanoma_13059,BLANK2.2E +1,BLANK2_2F,BLANK2_2F,NYU_BMS_Melanoma_13059_P2,K4,iTru7_202_10,GGACTGTT,iTru5_14_B,GGTGATGA,NYU_BMS_Melanoma_13059,BLANK2.2F +1,BLANK2_2G,BLANK2_2G,NYU_BMS_Melanoma_13059_P2,M4,iTru7_202_11,CTTAGTGG,iTru5_15_B,AACCGTGT,NYU_BMS_Melanoma_13059,BLANK2.2G +1,BLANK2_2H,BLANK2_2H,NYU_BMS_Melanoma_13059_P2,O4,iTru7_202_12,ATTGCGTG,iTru5_16_B,CCTATTGG,NYU_BMS_Melanoma_13059,BLANK2.2H +1,SP573843A04,SP573843A04,NYU_BMS_Melanoma_13059_P2,A6,iTru7_203_01,GTAACGAC,iTru5_17_B,TCAGTAGG,NYU_BMS_Melanoma_13059,SP573843A04 +1,EP683835A01,EP683835A01,NYU_BMS_Melanoma_13059_P2,C6,iTru7_203_02,CTTGCTGT,iTru5_18_B,TATGCGGT,NYU_BMS_Melanoma_13059,EP683835A01 +1,SP573824A04,SP573824A04,NYU_BMS_Melanoma_13059_P2,E6,iTru7_203_03,GTTGTTCG,iTru5_19_B,ATGCCTAG,NYU_BMS_Melanoma_13059,SP573824A04 +1,SP335002A04,SP335002A04,NYU_BMS_Melanoma_13059_P2,G6,iTru7_203_04,CGTTGAGT,iTru5_20_B,CTAGCAGT,NYU_BMS_Melanoma_13059,SP335002A04 +1,SP478193A02,SP478193A02,NYU_BMS_Melanoma_13059_P2,I6,iTru7_203_05,TCGAACCA,iTru5_21_B,AGGTCAAC,NYU_BMS_Melanoma_13059,SP478193A02 +1,SP232311A04,SP232311A04,NYU_BMS_Melanoma_13059_P2,K6,iTru7_203_06,AGACCGTA,iTru5_22_B,GAACGTGA,NYU_BMS_Melanoma_13059,SP232311A04 +1,SP415021A02,SP415021A02,NYU_BMS_Melanoma_13059_P2,M6,iTru7_203_07,CAGAGTGT,iTru5_23_B,ATCATGCG,NYU_BMS_Melanoma_13059,SP415021A02 +1,SP231630A02,SP231630A02,NYU_BMS_Melanoma_13059_P2,O6,iTru7_203_08,GACAAGAG,iTru5_24_B,CAACGAGT,NYU_BMS_Melanoma_13059,SP231630A02 +1,SP641029A02,SP641029A02,NYU_BMS_Melanoma_13059_P2,A8,iTru7_203_09,GAACACAC,iTru5_13_C,CGCAATGT,NYU_BMS_Melanoma_13059,SP641029A02 +1,SP232310A04,SP232310A04,NYU_BMS_Melanoma_13059_P2,C8,iTru7_203_10,GCTTAGCT,iTru5_14_C,AACAAGGC,NYU_BMS_Melanoma_13059,SP232310A04 +1,EP617442B01,EP617442B01,NYU_BMS_Melanoma_13059_P2,E8,iTru7_203_11,GAAGGAAG,iTru5_15_C,ACCATGTC,NYU_BMS_Melanoma_13059,EP617442B01 +1,EP587478B04,EP587478B04,NYU_BMS_Melanoma_13059_P2,G8,iTru7_203_12,CAGTTCTG,iTru5_16_C,AATCCAGC,NYU_BMS_Melanoma_13059,EP587478B04 +1,EP447928B04,EP447928B04,NYU_BMS_Melanoma_13059_P2,I8,iTru7_204_01,CAGGAGAT,iTru5_17_C,TTGCAACG,NYU_BMS_Melanoma_13059,EP447928B04 +1,EP587475B04,EP587475B04,NYU_BMS_Melanoma_13059_P2,K8,iTru7_204_02,GTAGCATC,iTru5_18_C,ACCTTCGA,NYU_BMS_Melanoma_13059,EP587475B04 +1,EP675042B01,EP675042B01,NYU_BMS_Melanoma_13059_P2,M8,iTru7_204_03,TCGTTCGT,iTru5_19_C,CATACGGA,NYU_BMS_Melanoma_13059,EP675042B01 +1,EP554513B02,EP554513B02,NYU_BMS_Melanoma_13059_P2,O8,iTru7_204_04,GGCAAGTT,iTru5_20_C,GACCGATA,NYU_BMS_Melanoma_13059,EP554513B02 +1,EP702221B04,EP702221B04,NYU_BMS_Melanoma_13059_P2,A10,iTru7_204_05,ACCATGTG,iTru5_21_C,AAGCTGGT,NYU_BMS_Melanoma_13059,EP702221B04 +1,AP568787B02,AP568787B02,NYU_BMS_Melanoma_13059_P2,C10,iTru7_204_06,CAACGGAT,iTru5_22_C,ACACCTCA,NYU_BMS_Melanoma_13059,AP568787B02 +1,EP054632B01,EP054632B01,NYU_BMS_Melanoma_13059_P2,E10,iTru7_204_07,CAATCGAC,iTru5_23_C,CGGAGTAT,NYU_BMS_Melanoma_13059,EP054632B01 +1,EP121013B01,EP121013B01,NYU_BMS_Melanoma_13059_P2,G10,iTru7_204_08,GTGTTCCT,iTru5_24_C,CTCGACTT,NYU_BMS_Melanoma_13059,EP121013B01 +1,EP649418A02,EP649418A02,NYU_BMS_Melanoma_13059_P2,I10,iTru7_204_09,AGGAACCT,iTru5_13_D,ATCCACGA,NYU_BMS_Melanoma_13059,EP649418A02 +1,EP573313B01,EP573313B01,NYU_BMS_Melanoma_13059_P2,K10,iTru7_204_10,ACCTTCTC,iTru5_14_D,ACAGTTCG,NYU_BMS_Melanoma_13059,EP573313B01 +1,LP154981A01,LP154981A01,NYU_BMS_Melanoma_13059_P2,M10,iTru7_204_11,CCGTAAGA,iTru5_15_D,ACAAGACG,NYU_BMS_Melanoma_13059,LP154981A01 +1,AP470859B01,AP470859B01,NYU_BMS_Melanoma_13059_P2,O10,iTru7_204_12,ATCGGTGT,iTru5_16_D,ATCGTGGT,NYU_BMS_Melanoma_13059,AP470859B01 +1,LP154986A01,LP154986A01,NYU_BMS_Melanoma_13059_P2,A12,iTru7_205_01,AGCTCCTA,iTru5_17_D,AGTCAGGT,NYU_BMS_Melanoma_13059,LP154986A01 +1,AP732307B04,AP732307B04,NYU_BMS_Melanoma_13059_P2,C12,iTru7_205_02,CCTTGATC,iTru5_18_D,CATCAACC,NYU_BMS_Melanoma_13059,AP732307B04 +1,EP533426B03,EP533426B03,NYU_BMS_Melanoma_13059_P2,E12,iTru7_205_03,CCATTCAC,iTru5_19_D,GGTCACTA,NYU_BMS_Melanoma_13059,EP533426B03 +1,EP587476B04,EP587476B04,NYU_BMS_Melanoma_13059_P2,G12,iTru7_205_04,GGACAATC,iTru5_20_D,CGGCATTA,NYU_BMS_Melanoma_13059,EP587476B04 +1,AP696363B02,AP696363B02,NYU_BMS_Melanoma_13059_P2,I12,iTru7_205_05,AAGGCGTT,iTru5_21_D,ACTCGATC,NYU_BMS_Melanoma_13059,AP696363B02 +1,EP587477B04,EP587477B04,NYU_BMS_Melanoma_13059_P2,K12,iTru7_205_06,GCCATAAC,iTru5_22_D,ATAGGTCC,NYU_BMS_Melanoma_13059,EP587477B04 +1,SP683466A02,SP683466A02,NYU_BMS_Melanoma_13059_P2,M12,iTru7_205_07,GAAGTTGG,iTru5_23_D,CAGTCACA,NYU_BMS_Melanoma_13059,SP683466A02 +1,EP554518B04,EP554518B04,NYU_BMS_Melanoma_13059_P2,O12,iTru7_205_08,AGCCAAGT,iTru5_24_D,TAGTGGTG,NYU_BMS_Melanoma_13059,EP554518B04 +1,EP533429B04,EP533429B04,NYU_BMS_Melanoma_13059_P2,A14,iTru7_205_09,TGACTGAC,iTru5_13_E,CTCCTGAA,NYU_BMS_Melanoma_13059,EP533429B04 +1,EP431570B01,EP431570B01,NYU_BMS_Melanoma_13059_P2,C14,iTru7_205_10,CACCTGTT,iTru5_14_E,AATCGCTG,NYU_BMS_Melanoma_13059,EP431570B01 +1,EP202095B04,EP202095B04,NYU_BMS_Melanoma_13059_P2,E14,iTru7_205_11,ATCCGGTA,iTru5_15_E,TGATAGGC,NYU_BMS_Melanoma_13059,EP202095B04 +1,EP504030B04,EP504030B04,NYU_BMS_Melanoma_13059_P2,G14,iTru7_205_12,ATCTGTCC,iTru5_16_E,ATGCGTCA,NYU_BMS_Melanoma_13059,EP504030B04 +1,EP207036B01,EP207036B01,NYU_BMS_Melanoma_13059_P2,I14,iTru7_206_01,CCAAGACT,iTru5_17_E,CAGCATAC,NYU_BMS_Melanoma_13059,EP207036B01 +1,EP393717B01,EP393717B01,NYU_BMS_Melanoma_13059_P2,K14,iTru7_206_02,ATGGCGAA,iTru5_18_E,AAGTGCAG,NYU_BMS_Melanoma_13059,EP393717B01 +1,SP491898A02,SP491898A02,NYU_BMS_Melanoma_13059_P2,M14,iTru7_206_03,GGTAGTGT,iTru5_19_E,GTATTCCG,NYU_BMS_Melanoma_13059,SP491898A02 +1,EP484973B04,EP484973B04,NYU_BMS_Melanoma_13059_P2,O14,iTru7_206_04,TCGCTGTT,iTru5_20_E,GTGATCCA,NYU_BMS_Melanoma_13059,EP484973B04 +1,EP479794B02,EP479794B02,NYU_BMS_Melanoma_13059_P2,A16,iTru7_206_05,AACGTGGA,iTru5_21_E,TATGGCAC,NYU_BMS_Melanoma_13059,EP479794B02 +1,EP554515B04,EP554515B04,NYU_BMS_Melanoma_13059_P2,C16,iTru7_206_06,AACGACGT,iTru5_22_E,ACCATAGG,NYU_BMS_Melanoma_13059,EP554515B04 +1,SP631994A04,SP631994A04,NYU_BMS_Melanoma_13059_P2,E16,iTru7_206_07,AACAGGAC,iTru5_23_E,CTCCAATC,NYU_BMS_Melanoma_13059,SP631994A04 +1,EP921593A04,EP921593A04,NYU_BMS_Melanoma_13059_P2,G16,iTru7_206_08,AAGCGCAT,iTru5_24_E,AGATACGG,NYU_BMS_Melanoma_13059,EP921593A04 +1,AP787247B04,AP787247B04,NYU_BMS_Melanoma_13059_P2,I16,iTru7_206_09,CACTGACA,iTru5_13_F,TCGATGAC,NYU_BMS_Melanoma_13059,AP787247B04 +1,EP090129B04,EP090129B04,NYU_BMS_Melanoma_13059_P2,K16,iTru7_206_10,AGGTCACT,iTru5_14_F,CCAACACT,NYU_BMS_Melanoma_13059,EP090129B04 +1,EP447975B02,EP447975B02,NYU_BMS_Melanoma_13059_P2,M16,iTru7_206_11,GTCACTGT,iTru5_15_F,CTTCACTG,NYU_BMS_Melanoma_13059,EP447975B02 +1,EP212214B01,EP212214B01,NYU_BMS_Melanoma_13059_P2,O16,iTru7_206_12,ATGCCAAC,iTru5_16_F,CGATGTTC,NYU_BMS_Melanoma_13059,EP212214B01 +1,EP410042B01,EP410042B01,NYU_BMS_Melanoma_13059_P2,A18,iTru7_207_01,CACGTTGT,iTru5_17_F,ACCGGTTA,NYU_BMS_Melanoma_13059,EP410042B01 +1,SP404409A02,SP404409A02,NYU_BMS_Melanoma_13059_P2,C18,iTru7_207_02,TATTCCGG,iTru5_18_F,CTTACAGC,NYU_BMS_Melanoma_13059,SP404409A02 +1,SP247340A04,SP247340A04,NYU_BMS_Melanoma_13059_P2,E18,iTru7_207_03,TGCTTCCA,iTru5_19_F,TGGCTCTT,NYU_BMS_Melanoma_13059,SP247340A04 +1,AP029018B01,AP029018B01,NYU_BMS_Melanoma_13059_P2,G18,iTru7_207_04,GTCTAGGT,iTru5_20_F,AAGACCGT,NYU_BMS_Melanoma_13059,AP029018B01 +1,EP872341A01,EP872341A01,NYU_BMS_Melanoma_13059_P2,I18,iTru7_207_05,GTTCAACC,iTru5_21_F,GGACATCA,NYU_BMS_Melanoma_13059,EP872341A01 +1,AP062219B03,AP062219B03,NYU_BMS_Melanoma_13059_P2,K18,iTru7_207_06,CGCAATCT,iTru5_22_F,TTGGTGCA,NYU_BMS_Melanoma_13059,AP062219B03 +1,EP790020A02,EP790020A02,NYU_BMS_Melanoma_13059_P2,M18,iTru7_207_07,TTAAGCGG,iTru5_23_F,AAGCGTTC,NYU_BMS_Melanoma_13059,EP790020A02 +1,EP808112A04,EP808112A04,NYU_BMS_Melanoma_13059_P2,O18,iTru7_207_08,TGCTTGGT,iTru5_24_F,ACTCTCCA,NYU_BMS_Melanoma_13059,EP808112A04 +1,SP404403A02,SP404403A02,NYU_BMS_Melanoma_13059_P2,A20,iTru7_207_09,ACACACTC,iTru5_13_G,GAACCTTC,NYU_BMS_Melanoma_13059,SP404403A02 +1,EP073160B01,EP073160B01,NYU_BMS_Melanoma_13059_P2,C20,iTru7_207_10,CCACTTCT,iTru5_14_G,GGAACATG,NYU_BMS_Melanoma_13059,EP073160B01 +1,EP012991B03,EP012991B03,NYU_BMS_Melanoma_13059_P2,E20,iTru7_207_11,TTGGTCTC,iTru5_15_G,GCCTATGT,NYU_BMS_Melanoma_13059,EP012991B03 +1,SP317297A02,SP317297A02,NYU_BMS_Melanoma_13059_P2,G20,iTru7_207_12,CTCATCAG,iTru5_16_G,CCGTAACT,NYU_BMS_Melanoma_13059,SP317297A02 +1,EP656055A04,EP656055A04,NYU_BMS_Melanoma_13059_P2,I20,iTru7_208_01,ATGACGTC,iTru5_17_G,CGGATCAA,NYU_BMS_Melanoma_13059,EP656055A04 +1,EP649623A01,EP649623A01,NYU_BMS_Melanoma_13059_P2,K20,iTru7_208_02,AACCTTGG,iTru5_18_G,CCACATTG,NYU_BMS_Melanoma_13059,EP649623A01 +1,EP790019A01,EP790019A01,NYU_BMS_Melanoma_13059_P2,M20,iTru7_208_03,GTCTTGCA,iTru5_19_G,CTCTATCG,NYU_BMS_Melanoma_13059,EP790019A01 +1,SP257519A04,SP257519A04,NYU_BMS_Melanoma_13059_P2,O20,iTru7_208_04,CAAGTGCA,iTru5_20_G,TGTGTCAG,NYU_BMS_Melanoma_13059,SP257519A04 +1,EP808104A01,EP808104A01,NYU_BMS_Melanoma_13059_P2,A22,iTru7_208_05,TCCGAGTT,iTru5_21_G,CGCAACTA,NYU_BMS_Melanoma_13059,EP808104A01 +1,EP808106A01,EP808106A01,NYU_BMS_Melanoma_13059_P2,C22,iTru7_208_06,ACCTAAGG,iTru5_22_G,GATCAGAC,NYU_BMS_Melanoma_13059,EP808106A01 +1,SP231629A02,SP231629A02,NYU_BMS_Melanoma_13059_P2,E22,iTru7_208_07,TTGGACGT,iTru5_23_G,ATTCCGCT,NYU_BMS_Melanoma_13059,SP231629A02 +1,EP675044A01,EP675044A01,NYU_BMS_Melanoma_13059_P2,G22,iTru7_208_08,GATAGCGA,iTru5_24_G,ATCCTTCC,NYU_BMS_Melanoma_13059,EP675044A01 +1,EP657260A01,EP657260A01,NYU_BMS_Melanoma_13059_P2,I22,iTru7_208_09,TTGGTGAG,iTru5_13_H,GCTTCACA,NYU_BMS_Melanoma_13059,EP657260A01 +1,EP808110A04,EP808110A04,NYU_BMS_Melanoma_13059_P2,K22,iTru7_208_10,AACTGGTG,iTru5_14_H,CTTCGGTT,NYU_BMS_Melanoma_13059,EP808110A04 +1,AP032413B04,AP032413B04,NYU_BMS_Melanoma_13059_P2,M22,iTru7_208_11,TAGCCGAA,iTru5_15_H,CATGGATC,NYU_BMS_Melanoma_13059,AP032413B04 +1,EP843906A04,EP843906A04,NYU_BMS_Melanoma_13059_P2,O22,iTru7_208_12,TGCGAACT,iTru5_16_H,GTCAACAG,NYU_BMS_Melanoma_13059,EP843906A04 +1,AP173305B04,AP173305B04,NYU_BMS_Melanoma_13059_P2,A24,iTru7_209_01,GACTTAGG,iTru5_17_H,AATTCCGG,NYU_BMS_Melanoma_13059,AP173305B04 +1,SP231628A02,SP231628A02,NYU_BMS_Melanoma_13059_P2,C24,iTru7_209_02,ACACCAGT,iTru5_18_H,GGCGAATA,NYU_BMS_Melanoma_13059,SP231628A02 +1,AP173301B04,AP173301B04,NYU_BMS_Melanoma_13059_P2,E24,iTru7_209_03,CCTGATTG,iTru5_19_H,AGGAGGTT,NYU_BMS_Melanoma_13059,AP173301B04 +1,SP404405A02,SP404405A02,NYU_BMS_Melanoma_13059_P2,G24,iTru7_209_04,TTGTGTGC,iTru5_20_H,ACTCTGAG,NYU_BMS_Melanoma_13059,SP404405A02 +1,EP649653A04,EP649653A04,NYU_BMS_Melanoma_13059_P2,I24,iTru7_209_05,TACCACAG,iTru5_21_H,GCCTTCTT,NYU_BMS_Melanoma_13059,EP649653A04 +1,EP718687A04,EP718687A04,NYU_BMS_Melanoma_13059_P2,K24,iTru7_209_06,ATTCGAGG,iTru5_22_H,TGGACCAT,NYU_BMS_Melanoma_13059,EP718687A04 +1,AP905750A02,AP905750A02,NYU_BMS_Melanoma_13059_P2,M24,iTru7_209_07,GCACGTAA,iTru5_23_H,GCATAGTC,NYU_BMS_Melanoma_13059,AP905750A02 +1,EP738468A01,EP738468A01,NYU_BMS_Melanoma_13059_P2,O24,iTru7_209_08,GTGTGACA,iTru5_24_H,TACACACG,NYU_BMS_Melanoma_13059,EP738468A01 +1,C6,C6,NYU_BMS_Melanoma_13059_P3,B1,iTru7_209_09,CTGGTTCT,iTru5_101_A,AACAACCG,NYU_BMS_Melanoma_13059,C6 +1,EP890157A02,EP890157A02,NYU_BMS_Melanoma_13059_P3,D1,iTru7_209_10,ACTGTGTC,iTru5_102_A,AAGCCTGA,NYU_BMS_Melanoma_13059,EP890157A02 +1,SP353893A02,SP353893A02,NYU_BMS_Melanoma_13059_P3,F1,iTru7_209_11,CCATACGT,iTru5_103_A,AAGGACCA,NYU_BMS_Melanoma_13059,SP353893A02 +1,EP944059A02,EP944059A02,NYU_BMS_Melanoma_13059_P3,H1,iTru7_209_12,GGTACTAC,iTru5_104_A,ACAACGTG,NYU_BMS_Melanoma_13059,EP944059A02 +1,EP970005A01,EP970005A01,NYU_BMS_Melanoma_13059_P3,J1,iTru7_210_01,CAGTCCAA,iTru5_105_A,ACGAACGA,NYU_BMS_Melanoma_13059,EP970005A01 +1,EP927461A04,EP927461A04,NYU_BMS_Melanoma_13059_P3,L1,iTru7_210_02,TCGTAGTC,iTru5_106_A,ACGTCCAA,NYU_BMS_Melanoma_13059,EP927461A04 +1,EP808111A03,EP808111A03,NYU_BMS_Melanoma_13059_P3,N1,iTru7_210_03,TCGAGTGA,iTru5_107_A,ACTGGTGT,NYU_BMS_Melanoma_13059,EP808111A03 +1,EP927459A04,EP927459A04,NYU_BMS_Melanoma_13059_P3,P1,iTru7_210_04,TGTAGCCA,iTru5_108_A,AGATCGTC,NYU_BMS_Melanoma_13059,EP927459A04 +1,SP317293A02,SP317293A02,NYU_BMS_Melanoma_13059_P3,B3,iTru7_210_05,TGCAGGTA,iTru5_109_A,AGCGAGAT,NYU_BMS_Melanoma_13059,SP317293A02 +1,SP235186A04,SP235186A04,NYU_BMS_Melanoma_13059_P3,D3,iTru7_210_06,CTAGGTGA,iTru5_110_A,AGGATAGC,NYU_BMS_Melanoma_13059,SP235186A04 +1,SP399724A04,SP399724A04,NYU_BMS_Melanoma_13059_P3,F3,iTru7_210_07,CTCCATGT,iTru5_111_A,AGGTGTTG,NYU_BMS_Melanoma_13059,SP399724A04 +1,EP738469A01,EP738469A01,NYU_BMS_Melanoma_13059_P3,H3,iTru7_210_08,CTTACAGC,iTru5_112_A,AGTCTTGG,NYU_BMS_Melanoma_13059,EP738469A01 +1,SP284095A03,SP284095A03,NYU_BMS_Melanoma_13059_P3,J3,iTru7_210_09,CGTATTCG,iTru5_101_B,GGTTGGTA,NYU_BMS_Melanoma_13059,SP284095A03 +1,C5,C5,NYU_BMS_Melanoma_13059_P3,L3,iTru7_210_10,ATTCTGGC,iTru5_102_B,GGAGGAAT,NYU_BMS_Melanoma_13059,C5 +1,EP337325B04,EP337325B04,NYU_BMS_Melanoma_13059_P3,N3,iTru7_210_11,TACCAGGA,iTru5_103_B,GTAAGGTG,NYU_BMS_Melanoma_13059,EP337325B04 +1,EP759450A04,EP759450A04,NYU_BMS_Melanoma_13059_P3,P3,iTru7_210_12,TACATCGG,iTru5_104_B,GGTGTACA,NYU_BMS_Melanoma_13059,EP759450A04 +1,BLANK3_3A,BLANK3_3A,NYU_BMS_Melanoma_13059_P3,B5,iTru7_301_01,GTGGTGTT,iTru5_105_B,GGATGTAG,NYU_BMS_Melanoma_13059,BLANK3.3A +1,BLANK3_3B,BLANK3_3B,NYU_BMS_Melanoma_13059_P3,D5,iTru7_301_02,CGCATGAT,iTru5_106_B,GTCCTGTT,NYU_BMS_Melanoma_13059,BLANK3.3B +1,BLANK3_3C,BLANK3_3C,NYU_BMS_Melanoma_13059_P3,F5,iTru7_301_03,AGTCGACA,iTru5_107_B,GTACCACA,NYU_BMS_Melanoma_13059,BLANK3.3C +1,BLANK3_3D,BLANK3_3D,NYU_BMS_Melanoma_13059_P3,H5,iTru7_301_04,GTGAGCTT,iTru5_108_B,GATCTCAG,NYU_BMS_Melanoma_13059,BLANK3.3D +1,BLANK3_3E,BLANK3_3E,NYU_BMS_Melanoma_13059_P3,J5,iTru7_301_05,GACATTCC,iTru5_109_B,GAGCTCTA,NYU_BMS_Melanoma_13059,BLANK3.3E +1,BLANK3_3F,BLANK3_3F,NYU_BMS_Melanoma_13059_P3,L5,iTru7_301_06,AGTTCGTC,iTru5_110_B,TACTAGCG,NYU_BMS_Melanoma_13059,BLANK3.3F +1,BLANK3_3G,BLANK3_3G,NYU_BMS_Melanoma_13059_P3,N5,iTru7_301_07,TAATGCCG,iTru5_111_B,GCACACAA,NYU_BMS_Melanoma_13059,BLANK3.3G +1,BLANK3_3H,BLANK3_3H,NYU_BMS_Melanoma_13059_P3,P5,iTru7_301_08,CGACCATT,iTru5_112_B,GAATCACC,NYU_BMS_Melanoma_13059,BLANK3.3H +1,AP006367B02,AP006367B02,NYU_BMS_Melanoma_13059_P3,B7,iTru7_301_09,CTGAAGCT,iTru5_101_C,AACAGCGA,NYU_BMS_Melanoma_13059,AP006367B02 +1,EP929277A02,EP929277A02,NYU_BMS_Melanoma_13059_P3,D7,iTru7_301_10,TTGAGGCA,iTru5_102_C,AAGCGACT,NYU_BMS_Melanoma_13059,EP929277A02 +1,AP324642B04,AP324642B04,NYU_BMS_Melanoma_13059_P3,F7,iTru7_301_11,GATCGAGT,iTru5_103_C,AAGGCGTA,NYU_BMS_Melanoma_13059,AP324642B04 +1,EP786631A04,EP786631A04,NYU_BMS_Melanoma_13059_P3,H7,iTru7_301_12,ATACTCCG,iTru5_104_C,ACACCGAT,NYU_BMS_Melanoma_13059,EP786631A04 +1,EP657385A04,EP657385A04,NYU_BMS_Melanoma_13059_P3,J7,iTru7_302_01,AAGTCCGT,iTru5_105_C,ACGAATCC,NYU_BMS_Melanoma_13059,EP657385A04 +1,SP235189A01,SP235189A01,NYU_BMS_Melanoma_13059_P3,L7,iTru7_302_02,TAGCGTCT,iTru5_106_C,ACTACGGT,NYU_BMS_Melanoma_13059,SP235189A01 +1,EP448041B04,EP448041B04,NYU_BMS_Melanoma_13059_P3,N7,iTru7_302_03,TGACGCAT,iTru5_107_C,AGAAGCCT,NYU_BMS_Melanoma_13059,EP448041B04 +1,SP231631A02,SP231631A02,NYU_BMS_Melanoma_13059_P3,P7,iTru7_302_04,AGCGTGTT,iTru5_108_C,AGATTGCG,NYU_BMS_Melanoma_13059,SP231631A02 +1,SP280481A02,SP280481A02,NYU_BMS_Melanoma_13059_P3,B9,iTru7_302_05,TGCACCAA,iTru5_109_C,AGCGTGTA,NYU_BMS_Melanoma_13059,SP280481A02 +1,AP032412B04,AP032412B04,NYU_BMS_Melanoma_13059_P3,D9,iTru7_302_06,ATCACACG,iTru5_110_C,AGGCTGAA,NYU_BMS_Melanoma_13059,AP032412B04 +1,EP649737A03,EP649737A03,NYU_BMS_Melanoma_13059_P3,F9,iTru7_302_07,ATGCCTGT,iTru5_111_C,AGGTTCCT,NYU_BMS_Melanoma_13059,EP649737A03 +1,AP967057A04,AP967057A04,NYU_BMS_Melanoma_13059_P3,H9,iTru7_302_08,ACCTGACT,iTru5_112_C,AGTGACCT,NYU_BMS_Melanoma_13059,AP967057A04 +1,EP876243A04,EP876243A04,NYU_BMS_Melanoma_13059_P3,J9,iTru7_302_09,GCTTCGAA,iTru5_101_D,GGTTAGCT,NYU_BMS_Melanoma_13059,EP876243A04 +1,SP229387A04,SP229387A04,NYU_BMS_Melanoma_13059_P3,L9,iTru7_302_10,CGGTCATA,iTru5_102_D,GTAGCGTA,NYU_BMS_Melanoma_13059,SP229387A04 +1,EP667743A04,EP667743A04,NYU_BMS_Melanoma_13059_P3,N9,iTru7_302_11,GTTAGACG,iTru5_103_D,GGACTACT,NYU_BMS_Melanoma_13059,EP667743A04 +1,SP246941A01,SP246941A01,NYU_BMS_Melanoma_13059_P3,P9,iTru7_302_12,TCTAACGC,iTru5_104_D,TGGTTCGA,NYU_BMS_Melanoma_13059,SP246941A01 +1,AP745799A04,AP745799A04,NYU_BMS_Melanoma_13059_P3,B11,iTru7_303_01,ATAGCGGT,iTru5_105_D,GGAGTCTT,NYU_BMS_Melanoma_13059,AP745799A04 +1,SP205732A02,SP205732A02,NYU_BMS_Melanoma_13059_P3,D11,iTru7_303_02,GGACCTAT,iTru5_106_D,GGATTCAC,NYU_BMS_Melanoma_13059,SP205732A02 +1,SP230382A04,SP230382A04,NYU_BMS_Melanoma_13059_P3,F11,iTru7_303_03,CGATGCTT,iTru5_107_D,TCGGATTC,NYU_BMS_Melanoma_13059,SP230382A04 +1,SP230380A02,SP230380A02,NYU_BMS_Melanoma_13059_P3,H11,iTru7_303_04,GAGCTTGT,iTru5_108_D,GAGCAATC,NYU_BMS_Melanoma_13059,SP230380A02 +1,SP230381A01,SP230381A01,NYU_BMS_Melanoma_13059_P3,J11,iTru7_303_05,GTGAAGTG,iTru5_109_D,GATCCACT,NYU_BMS_Melanoma_13059,SP230381A01 +1,SP205754A01,SP205754A01,NYU_BMS_Melanoma_13059_P3,L11,iTru7_303_06,GAGTGGTT,iTru5_110_D,GAAGACTG,NYU_BMS_Melanoma_13059,SP205754A01 +1,EP606662B04,EP606662B04,NYU_BMS_Melanoma_13059_P3,N11,iTru7_303_07,TGATACGC,iTru5_111_D,GCCACTTA,NYU_BMS_Melanoma_13059,EP606662B04 +1,AP780167B02,AP780167B02,NYU_BMS_Melanoma_13059_P3,P11,iTru7_303_08,AGCAGATG,iTru5_112_D,TCCATTGC,NYU_BMS_Melanoma_13059,AP780167B02 +1,EP447927B04,EP447927B04,NYU_BMS_Melanoma_13059_P3,B13,iTru7_303_09,CCAGTGTT,iTru5_101_E,AACAGTCC,NYU_BMS_Melanoma_13059,EP447927B04 +1,C18,C18,NYU_BMS_Melanoma_13059_P3,D13,iTru7_303_10,ATTCCTCC,iTru5_102_E,AAGCTCAC,NYU_BMS_Melanoma_13059,C18 +1,LP191039A01,LP191039A01,NYU_BMS_Melanoma_13059_P3,F13,iTru7_303_11,CTAACTCG,iTru5_103_E,AAGTCCTC,NYU_BMS_Melanoma_13059,LP191039A01 +1,EP606663B04,EP606663B04,NYU_BMS_Melanoma_13059_P3,H13,iTru7_303_12,GATGAGAC,iTru5_104_E,ACACTCTG,NYU_BMS_Melanoma_13059,EP606663B04 +1,EP573296B01,EP573296B01,NYU_BMS_Melanoma_13059_P3,J13,iTru7_304_01,TCAGGCTT,iTru5_105_E,ACGGTACA,NYU_BMS_Melanoma_13059,EP573296B01 +1,EP447926B04,EP447926B04,NYU_BMS_Melanoma_13059_P3,L13,iTru7_304_02,GTTCTCGT,iTru5_106_E,ACTCCTAC,NYU_BMS_Melanoma_13059,EP447926B04 +1,LP127767A01,LP127767A01,NYU_BMS_Melanoma_13059_P3,N13,iTru7_304_03,ATCGATCG,iTru5_107_E,AGAGGATG,NYU_BMS_Melanoma_13059,LP127767A01 +1,EP479266B04,EP479266B04,NYU_BMS_Melanoma_13059_P3,P13,iTru7_304_04,CCTCAGTT,iTru5_108_E,AGCCGTAA,NYU_BMS_Melanoma_13059,EP479266B04 +1,LP128543A01,LP128543A01,NYU_BMS_Melanoma_13059_P3,B15,iTru7_304_05,ACTGCTAG,iTru5_109_E,AGCTTCAG,NYU_BMS_Melanoma_13059,LP128543A01 +1,EP479270B03,EP479270B03,NYU_BMS_Melanoma_13059_P3,D15,iTru7_304_06,TCCGTGAA,iTru5_110_E,AGGTAGGA,NYU_BMS_Melanoma_13059,EP479270B03 +1,EP921594A04,EP921594A04,NYU_BMS_Melanoma_13059_P3,F15,iTru7_304_07,GGATTCGT,iTru5_111_E,AGTACACG,NYU_BMS_Melanoma_13059,EP921594A04 +1,EP554501B04,EP554501B04,NYU_BMS_Melanoma_13059_P3,H15,iTru7_304_08,GGTCAGAT,iTru5_112_E,AGTGCATC,NYU_BMS_Melanoma_13059,EP554501B04 +1,EP542577B04,EP542577B04,NYU_BMS_Melanoma_13059_P3,J15,iTru7_304_09,TCGTGGAT,iTru5_101_F,TTGGACTG,NYU_BMS_Melanoma_13059,EP542577B04 +1,EP487995B04,EP487995B04,NYU_BMS_Melanoma_13059_P3,L15,iTru7_304_10,CGTGTGTA,iTru5_102_F,GTCGATTG,NYU_BMS_Melanoma_13059,EP487995B04 +1,EP542578B04,EP542578B04,NYU_BMS_Melanoma_13059_P3,N15,iTru7_304_11,GTGTCTGA,iTru5_103_F,GGCATTCT,NYU_BMS_Melanoma_13059,EP542578B04 +1,EP573310B01,EP573310B01,NYU_BMS_Melanoma_13059_P3,P15,iTru7_304_12,GAATCGTG,iTru5_104_F,TGGTATCC,NYU_BMS_Melanoma_13059,EP573310B01 +1,EP244366B01,EP244366B01,NYU_BMS_Melanoma_13059_P3,B17,iTru7_305_01,GCGATAGT,iTru5_105_F,GGCAAGTT,NYU_BMS_Melanoma_13059,EP244366B01 +1,EP533389B03,EP533389B03,NYU_BMS_Melanoma_13059_P3,D17,iTru7_305_02,GGCTATTG,iTru5_106_F,GTCTGAGT,NYU_BMS_Melanoma_13059,EP533389B03 +1,EP244360B01,EP244360B01,NYU_BMS_Melanoma_13059_P3,F17,iTru7_305_03,AGTTACGG,iTru5_107_F,TCTACGCA,NYU_BMS_Melanoma_13059,EP244360B01 +1,AP911328B01,AP911328B01,NYU_BMS_Melanoma_13059_P3,H17,iTru7_305_04,CGTACGAA,iTru5_108_F,GAGGCATT,NYU_BMS_Melanoma_13059,AP911328B01 +1,AP481403B02,AP481403B02,NYU_BMS_Melanoma_13059_P3,J17,iTru7_305_05,ACCACGAT,iTru5_109_F,GCTAAGGA,NYU_BMS_Melanoma_13059,AP481403B02 +1,22_001_801_552_503_00,22_001_801_552_503_00,NYU_BMS_Melanoma_13059_P3,L17,iTru7_305_06,GATTACCG,iTru5_110_F,GCCAGAAT,NYU_BMS_Melanoma_13059,22_001_801_552_503_00 +1,EP372981B04,EP372981B04,NYU_BMS_Melanoma_13059_P3,N17,iTru7_305_07,GAGATACG,iTru5_111_F,TAAGTGGC,NYU_BMS_Melanoma_13059,EP372981B04 +1,EP447929B04,EP447929B04,NYU_BMS_Melanoma_13059_P3,P17,iTru7_305_08,CGACGTTA,iTru5_112_F,GCAATGAG,NYU_BMS_Melanoma_13059,EP447929B04 +1,SP573849A04,SP573849A04,NYU_BMS_Melanoma_13059_P3,B19,iTru7_305_09,GAGATGTC,iTru5_101_G,AACTGAGG,NYU_BMS_Melanoma_13059,SP573849A04 +1,SP577399A02,SP577399A02,NYU_BMS_Melanoma_13059_P3,D19,iTru7_305_10,GATTGGAG,iTru5_102_G,AAGGAAGG,NYU_BMS_Melanoma_13059,SP577399A02 +1,EP606656B03,EP606656B03,NYU_BMS_Melanoma_13059_P3,F19,iTru7_305_11,GCAATTCG,iTru5_103_G,AATGGTCG,NYU_BMS_Melanoma_13059,EP606656B03 +1,LP166715A01,LP166715A01,NYU_BMS_Melanoma_13059_P3,H19,iTru7_305_12,CGTCAATG,iTru5_104_G,ACAGCAAG,NYU_BMS_Melanoma_13059,LP166715A01 +1,AP668628B04,AP668628B04,NYU_BMS_Melanoma_13059_P3,J19,iTru7_401_01,ATGCACGA,iTru5_105_G,ACGTATGG,NYU_BMS_Melanoma_13059,AP668628B04 +1,C14,C14,NYU_BMS_Melanoma_13059_P3,L19,iTru7_401_02,ATCGCCAT,iTru5_106_G,ACTGCACT,NYU_BMS_Melanoma_13059,C14 +1,EP446610B02,EP446610B02,NYU_BMS_Melanoma_13059_P3,N19,iTru7_401_03,TCTCGCAA,iTru5_107_G,AGAGTCCA,NYU_BMS_Melanoma_13059,EP446610B02 +1,EP339061B02,EP339061B02,NYU_BMS_Melanoma_13059_P3,P19,iTru7_401_04,ACGACAGA,iTru5_108_G,AGCCTATC,NYU_BMS_Melanoma_13059,EP339061B02 +1,SP681591A04,SP681591A04,NYU_BMS_Melanoma_13059_P3,B21,iTru7_401_05,TTACGGCT,iTru5_109_G,AGGAACAC,NYU_BMS_Melanoma_13059,SP681591A04 +1,EP393712B02,EP393712B02,NYU_BMS_Melanoma_13059_P3,D21,iTru7_401_06,GAGGACTT,iTru5_110_G,AGGTCTGT,NYU_BMS_Melanoma_13059,EP393712B02 +1,EP410041B01,EP410041B01,NYU_BMS_Melanoma_13059_P3,F21,iTru7_401_07,GGCATACT,iTru5_111_G,AGTATGCC,NYU_BMS_Melanoma_13059,EP410041B01 +1,SP453872A01,SP453872A01,NYU_BMS_Melanoma_13059_P3,H21,iTru7_401_08,CGTAGGTT,iTru5_112_G,AGTTCGCA,NYU_BMS_Melanoma_13059,SP453872A01 +1,22_001_710_503_791_00,22_001_710_503_791_00,NYU_BMS_Melanoma_13059_P3,J21,iTru7_401_09,ATATGCGC,iTru5_101_H,TGGAAGCA,NYU_BMS_Melanoma_13059,22_001_710_503_791_00 +1,LP128540A01,LP128540A01,NYU_BMS_Melanoma_13059_P3,L21,iTru7_401_10,GGATGTAG,iTru5_102_H,GTCAGTCA,NYU_BMS_Melanoma_13059,LP128540A01 +1,EP339053B02,EP339053B02,NYU_BMS_Melanoma_13059_P3,N21,iTru7_401_11,CCTGTCAT,iTru5_103_H,GTAACCGA,NYU_BMS_Melanoma_13059,EP339053B02 +1,EP617443B01,EP617443B01,NYU_BMS_Melanoma_13059_P3,P21,iTru7_401_12,TGCTCATG,iTru5_104_H,GTTATGGC,NYU_BMS_Melanoma_13059,EP617443B01 +1,EP190307B01,EP190307B01,NYU_BMS_Melanoma_13059_P3,B23,iTru7_402_01,TGAAGACG,iTru5_105_H,GTAAGCAC,NYU_BMS_Melanoma_13059,EP190307B01 +1,AP795068B04,AP795068B04,NYU_BMS_Melanoma_13059_P3,D23,iTru7_402_02,GTTACGCA,iTru5_106_H,GGAATGTC,NYU_BMS_Melanoma_13059,AP795068B04 +1,LP128541A01,LP128541A01,NYU_BMS_Melanoma_13059_P3,F23,iTru7_402_03,ACTCAGAC,iTru5_107_H,GAGAAGGT,NYU_BMS_Melanoma_13059,LP128541A01 +1,EP584756B04,EP584756B04,NYU_BMS_Melanoma_13059_P3,H23,iTru7_402_04,GTCCACAT,iTru5_108_H,GAGTAGAG,NYU_BMS_Melanoma_13059,EP584756B04 +1,SP284096A02,SP284096A02,NYU_BMS_Melanoma_13059_P3,J23,iTru7_402_05,CGCTAGTA,iTru5_109_H,GCATTGGT,NYU_BMS_Melanoma_13059,SP284096A02 +1,EP431562B04,EP431562B04,NYU_BMS_Melanoma_13059_P3,L23,iTru7_402_06,GAATCCGA,iTru5_110_H,TCCAGCAA,NYU_BMS_Melanoma_13059,EP431562B04 +1,EP685640B01,EP685640B01,NYU_BMS_Melanoma_13059_P3,N23,iTru7_402_07,GAGACGAT,iTru5_111_H,GAATCCGT,NYU_BMS_Melanoma_13059,EP685640B01 +1,EP339059B02,EP339059B02,NYU_BMS_Melanoma_13059_P3,P23,iTru7_402_08,TAAGTGGC,iTru5_112_H,TACATCGG,NYU_BMS_Melanoma_13059,EP339059B02 +1,EP431575B01,EP431575B01,NYU_BMS_Melanoma_13059_P4,B2,iTru7_402_09,ACTGAGGT,iTru5_113_A,ATAACGCC,NYU_BMS_Melanoma_13059,EP431575B01 +1,EP379938B01,EP379938B01,NYU_BMS_Melanoma_13059_P4,D2,iTru7_402_10,TGTACCGT,iTru5_114_A,ATGACAGG,NYU_BMS_Melanoma_13059,EP379938B01 +1,EP529635B02,EP529635B02,NYU_BMS_Melanoma_13059_P4,F2,iTru7_402_11,AGCAAGCA,iTru5_115_A,CAACACAG,NYU_BMS_Melanoma_13059,EP529635B02 +1,EP554506B04,EP554506B04,NYU_BMS_Melanoma_13059_P4,H2,iTru7_402_12,TCTCGTGT,iTru5_116_A,CACCAGTT,NYU_BMS_Melanoma_13059,EP554506B04 +1,EP455757B04,EP455757B04,NYU_BMS_Melanoma_13059_P4,J2,iTru7_115_01,CAAGGTCT,iTru5_117_A,CAGAGTGA,NYU_BMS_Melanoma_13059,EP455757B04 +1,SP491900A02,SP491900A02,NYU_BMS_Melanoma_13059_P4,L2,iTru7_115_02,TAGACGTG,iTru5_118_A,CCGATGTA,NYU_BMS_Melanoma_13059,SP491900A02 +1,LP196272A01,LP196272A01,NYU_BMS_Melanoma_13059_P4,N2,iTru7_115_03,TGAGCTAG,iTru5_119_A,CCTTCCAT,NYU_BMS_Melanoma_13059,LP196272A01 +1,SP704319A04,SP704319A04,NYU_BMS_Melanoma_13059_P4,P2,iTru7_115_04,CTGACACA,iTru5_120_A,CGGTAATC,NYU_BMS_Melanoma_13059,SP704319A04 +1,EP617441B01,EP617441B01,NYU_BMS_Melanoma_13059_P4,B4,iTru7_115_05,ACGGTCTT,iTru5_121_A,CTAGGTTG,NYU_BMS_Melanoma_13059,EP617441B01 +1,AP687591B04,AP687591B04,NYU_BMS_Melanoma_13059_P4,D4,iTru7_115_06,GCTGTTGT,iTru5_122_A,CTCGGTAA,NYU_BMS_Melanoma_13059,AP687591B04 +1,SP640978A02,SP640978A02,NYU_BMS_Melanoma_13059_P4,F4,iTru7_115_07,CACTAGCT,iTru5_123_A,CTGTGGTA,NYU_BMS_Melanoma_13059,SP640978A02 +1,EP981129A02,EP981129A02,NYU_BMS_Melanoma_13059_P4,H4,iTru7_115_08,TGGTACAG,iTru5_124_A,GTACGATC,NYU_BMS_Melanoma_13059,EP981129A02 +1,EP455763B04,EP455763B04,NYU_BMS_Melanoma_13059_P4,J4,iTru7_115_09,AGCACTTC,iTru5_113_B,TCTGTCGT,NYU_BMS_Melanoma_13059,EP455763B04 +1,EP339057B02,EP339057B02,NYU_BMS_Melanoma_13059_P4,L4,iTru7_115_10,GCATACAG,iTru5_114_B,GAATGGCA,NYU_BMS_Melanoma_13059,EP339057B02 +1,SP491897A02,SP491897A02,NYU_BMS_Melanoma_13059_P4,N4,iTru7_115_11,CTTAGGAC,iTru5_115_B,GTGTGTTC,NYU_BMS_Melanoma_13059,SP491897A02 +1,EP980752B04,EP980752B04,NYU_BMS_Melanoma_13059_P4,P4,iTru7_211_01,GCTTCTTG,iTru5_116_B,GGTTGAAC,NYU_BMS_Melanoma_13059,EP980752B04 +1,LP128539A01,LP128539A01,NYU_BMS_Melanoma_13059_P4,B6,iTru7_101_01,ACGTTACC,iTru5_117_B,GGCTCAAT,NYU_BMS_Melanoma_13059,LP128539A01 +1,EP996831B04,EP996831B04,NYU_BMS_Melanoma_13059_P4,D6,iTru7_101_02,CTGTGTTG,iTru5_118_B,TTCGCCAT,NYU_BMS_Melanoma_13059,EP996831B04 +1,EP273332B04,EP273332B04,NYU_BMS_Melanoma_13059_P4,F6,iTru7_101_03,TGAGGTGT,iTru5_119_B,GTCCTTGA,NYU_BMS_Melanoma_13059,EP273332B04 +1,EP483291B04,EP483291B04,NYU_BMS_Melanoma_13059_P4,H6,iTru7_101_04,GATCCATG,iTru5_120_B,TAACGTCG,NYU_BMS_Melanoma_13059,EP483291B04 +1,EP393715B01,EP393715B01,NYU_BMS_Melanoma_13059_P4,J6,iTru7_101_05,GCCTATCA,iTru5_121_B,GAGACCAA,NYU_BMS_Melanoma_13059,EP393715B01 +1,EP617440B01,EP617440B01,NYU_BMS_Melanoma_13059_P4,L6,iTru7_101_06,AACAACCG,iTru5_122_B,GATCAAGG,NYU_BMS_Melanoma_13059,EP617440B01 +1,EP729434A01,EP729434A01,NYU_BMS_Melanoma_13059_P4,N6,iTru7_101_07,ACTCGTTG,iTru5_123_B,GCAACCAT,NYU_BMS_Melanoma_13059,EP729434A01 +1,SP645141A03,SP645141A03,NYU_BMS_Melanoma_13059_P4,P6,iTru7_101_08,CCTATGGT,iTru5_124_B,AAGGAGAC,NYU_BMS_Melanoma_13059,SP645141A03 +1,BLANK4_4A,BLANK4_4A,NYU_BMS_Melanoma_13059_P4,B8,iTru7_101_09,TGTACACC,iTru5_113_C,ATCGGAGA,NYU_BMS_Melanoma_13059,BLANK4.4A +1,BLANK4_4B,BLANK4_4B,NYU_BMS_Melanoma_13059_P4,D8,iTru7_101_10,GTATGCTG,iTru5_114_C,ATGCGCTT,NYU_BMS_Melanoma_13059,BLANK4.4B +1,BLANK4_4C,BLANK4_4C,NYU_BMS_Melanoma_13059_P4,F8,iTru7_101_11,TGATGTCC,iTru5_115_C,CAACCGTA,NYU_BMS_Melanoma_13059,BLANK4.4C +1,BLANK4_4D,BLANK4_4D,NYU_BMS_Melanoma_13059_P4,H8,iTru7_101_12,GTCCTTCT,iTru5_116_C,CACTTCAC,NYU_BMS_Melanoma_13059,BLANK4.4D +1,BLANK4_4E,BLANK4_4E,NYU_BMS_Melanoma_13059_P4,J8,iTru7_102_01,ATAAGGCG,iTru5_117_C,CAGCTAGA,NYU_BMS_Melanoma_13059,BLANK4.4E +1,BLANK4_4F,BLANK4_4F,NYU_BMS_Melanoma_13059_P4,L8,iTru7_102_02,CTTACCTG,iTru5_118_C,CCGTTATG,NYU_BMS_Melanoma_13059,BLANK4.4F +1,BLANK4_4G,BLANK4_4G,NYU_BMS_Melanoma_13059_P4,N8,iTru7_102_03,CGTTGCAA,iTru5_119_C,CGAACAAC,NYU_BMS_Melanoma_13059,BLANK4.4G +1,BLANK4_4H,BLANK4_4H,NYU_BMS_Melanoma_13059_P4,P8,iTru7_102_04,GATTCAGC,iTru5_120_C,CGTAGATG,NYU_BMS_Melanoma_13059,BLANK4.4H +1,SP232114A04,SP232114A04,NYU_BMS_Melanoma_13059_P4,B10,iTru7_102_05,TCACGTTC,iTru5_121_C,CTATGCCT,NYU_BMS_Melanoma_13059,SP232114A04 +1,EP393714B01,EP393714B01,NYU_BMS_Melanoma_13059_P4,D10,iTru7_102_06,TGTGCGTT,iTru5_122_C,CTGATGAG,NYU_BMS_Melanoma_13059,EP393714B01 +1,EP533388B01,EP533388B01,NYU_BMS_Melanoma_13059_P4,F10,iTru7_102_07,TAGTTGCG,iTru5_123_C,CTTCCTTC,NYU_BMS_Melanoma_13059,EP533388B01 +1,EP724905B01,EP724905B01,NYU_BMS_Melanoma_13059_P4,H10,iTru7_102_08,AAGAGCCA,iTru5_124_C,GTCTCATC,NYU_BMS_Melanoma_13059,EP724905B01 +1,EP282108B01,EP282108B01,NYU_BMS_Melanoma_13059_P4,J10,iTru7_102_09,ACAGCTCA,iTru5_113_D,GCGCATAT,NYU_BMS_Melanoma_13059,EP282108B01 +1,EP282107B01,EP282107B01,NYU_BMS_Melanoma_13059_P4,L10,iTru7_102_10,GTTAAGGC,iTru5_114_D,GAAGATCC,NYU_BMS_Melanoma_13059,EP282107B01 +1,EP001625B01,EP001625B01,NYU_BMS_Melanoma_13059_P4,N10,iTru7_102_11,AAGCCACA,iTru5_115_D,GTTGGCAT,NYU_BMS_Melanoma_13059,EP001625B01 +1,EP073209B02,EP073209B02,NYU_BMS_Melanoma_13059_P4,P10,iTru7_102_12,ACACGGTT,iTru5_116_D,GTGAATGG,NYU_BMS_Melanoma_13059,EP073209B02 +1,SP232079A01,SP232079A01,NYU_BMS_Melanoma_13059_P4,B12,iTru7_103_01,CAGCGATT,iTru5_117_D,GTATCGAG,NYU_BMS_Melanoma_13059,SP232079A01 +1,EP772145A02,EP772145A02,NYU_BMS_Melanoma_13059_P4,D12,iTru7_103_02,TAGTGACC,iTru5_118_D,TGCAAGAC,NYU_BMS_Melanoma_13059,EP772145A02 +1,AP771472A04,AP771472A04,NYU_BMS_Melanoma_13059_P4,F12,iTru7_103_03,CGAGACTA,iTru5_119_D,GAGTGTGT,NYU_BMS_Melanoma_13059,AP771472A04 +1,AP223470B01,AP223470B01,NYU_BMS_Melanoma_13059_P4,H12,iTru7_103_04,GACATGGT,iTru5_120_D,TAAGCGCA,NYU_BMS_Melanoma_13059,AP223470B01 +1,SP404412A02,SP404412A02,NYU_BMS_Melanoma_13059_P4,J12,iTru7_103_05,GCATGTCT,iTru5_121_D,TAGCAGGA,NYU_BMS_Melanoma_13059,SP404412A02 +1,EP772143A02,EP772143A02,NYU_BMS_Melanoma_13059_P4,L12,iTru7_103_06,ACTCCATC,iTru5_122_D,GACTACGA,NYU_BMS_Melanoma_13059,EP772143A02 +1,SP408629A01,SP408629A01,NYU_BMS_Melanoma_13059_P4,N12,iTru7_103_07,TGTGACTG,iTru5_123_D,GACGTCAT,NYU_BMS_Melanoma_13059,SP408629A01 +1,EP749735A07,EP749735A07,NYU_BMS_Melanoma_13059_P4,P12,iTru7_103_08,CGAAGAAC,iTru5_124_D,AAGAGGCA,NYU_BMS_Melanoma_13059,EP749735A07 +1,EP846485A01,EP846485A01,NYU_BMS_Melanoma_13059_P4,B14,iTru7_103_09,GGTGTCTT,iTru5_113_E,ATCGTCTC,NYU_BMS_Melanoma_13059,EP846485A01 +1,EP808109A01,EP808109A01,NYU_BMS_Melanoma_13059_P4,D14,iTru7_103_10,AAGAAGGC,iTru5_114_E,ATGGCGAT,NYU_BMS_Melanoma_13059,EP808109A01 +1,SP416130A04,SP416130A04,NYU_BMS_Melanoma_13059_P4,F14,iTru7_103_11,AGGTTCGA,iTru5_115_E,CAAGAAGC,NYU_BMS_Melanoma_13059,SP416130A04 +1,EP882752A01,EP882752A01,NYU_BMS_Melanoma_13059_P4,H14,iTru7_103_12,CATGTTCC,iTru5_116_E,CAGAACTG,NYU_BMS_Melanoma_13059,EP882752A01 +1,AP953594A02,AP953594A02,NYU_BMS_Melanoma_13059_P4,J14,iTru7_104_01,GTGCCATA,iTru5_117_E,CAGGTAAG,NYU_BMS_Melanoma_13059,AP953594A02 +1,AP046324B02,AP046324B02,NYU_BMS_Melanoma_13059_P4,L14,iTru7_104_02,CCTTGTAG,iTru5_118_E,CCTACCTA,NYU_BMS_Melanoma_13059,AP046324B02 +1,AP891020A04,AP891020A04,NYU_BMS_Melanoma_13059_P4,N14,iTru7_104_03,GCTGGATT,iTru5_119_E,CGAAGTCA,NYU_BMS_Melanoma_13059,AP891020A04 +1,EP790023A01,EP790023A01,NYU_BMS_Melanoma_13059_P4,P14,iTru7_104_04,TAACGAGG,iTru5_120_E,CGTCTTCA,NYU_BMS_Melanoma_13059,EP790023A01 +1,EP657386A01,EP657386A01,NYU_BMS_Melanoma_13059_P4,B16,iTru7_104_05,ATGGTTGC,iTru5_121_E,CTCAAGCT,NYU_BMS_Melanoma_13059,EP657386A01 +1,EP805337A01,EP805337A01,NYU_BMS_Melanoma_13059_P4,D16,iTru7_104_06,CCTATACC,iTru5_122_E,CTGCCATA,NYU_BMS_Melanoma_13059,EP805337A01 +1,EP927458A04,EP927458A04,NYU_BMS_Melanoma_13059_P4,F16,iTru7_104_07,TTAGGTCG,iTru5_123_E,CTTGCTAG,NYU_BMS_Melanoma_13059,EP927458A04 +1,AP173299B04,AP173299B04,NYU_BMS_Melanoma_13059_P4,H16,iTru7_104_08,GCAAGATC,iTru5_124_E,GTCTGCAA,NYU_BMS_Melanoma_13059,AP173299B04 +1,EP768164A02,EP768164A02,NYU_BMS_Melanoma_13059_P4,J16,iTru7_104_09,AGAGCCTT,iTru5_113_F,GCTACTCT,NYU_BMS_Melanoma_13059,EP768164A02 +1,EP886422A01,EP886422A01,NYU_BMS_Melanoma_13059_P4,L16,iTru7_104_10,GCAATGGA,iTru5_114_F,TACAGAGC,NYU_BMS_Melanoma_13059,EP886422A01 +1,AP103463B01,AP103463B01,NYU_BMS_Melanoma_13059_P4,N16,iTru7_104_11,CTGGAGTA,iTru5_115_F,GGTCGTAT,NYU_BMS_Melanoma_13059,AP103463B01 +1,AP744361A02,AP744361A02,NYU_BMS_Melanoma_13059_P4,P16,iTru7_104_12,GAACATCG,iTru5_116_F,GTCGTTAC,NYU_BMS_Melanoma_13059,AP744361A02 +1,AP065292B01,AP065292B01,NYU_BMS_Melanoma_13059_P4,B18,iTru7_105_01,GCACAACT,iTru5_117_F,TTCACGGA,NYU_BMS_Melanoma_13059,AP065292B01 +1,SP257517A04,SP257517A04,NYU_BMS_Melanoma_13059_P4,D18,iTru7_105_02,TTCTCTCG,iTru5_118_F,TGCTTGCT,NYU_BMS_Melanoma_13059,SP257517A04 +1,EP790021A04,EP790021A04,NYU_BMS_Melanoma_13059_P4,F18,iTru7_105_03,AACGGTCA,iTru5_119_F,TCTTACGG,NYU_BMS_Melanoma_13059,EP790021A04 +1,EP675075A04,EP675075A04,NYU_BMS_Melanoma_13059_P4,H18,iTru7_105_04,ACAGACCT,iTru5_120_F,TCCTCATG,NYU_BMS_Melanoma_13059,EP675075A04 +1,SP388683A02,SP388683A02,NYU_BMS_Melanoma_13059_P4,J18,iTru7_105_05,TCTCTTCC,iTru5_121_F,GATGTCGA,NYU_BMS_Melanoma_13059,SP388683A02 +1,SP232309A01,SP232309A01,NYU_BMS_Melanoma_13059_P4,L18,iTru7_105_06,AGTGTTGG,iTru5_122_F,GAAGTGCT,NYU_BMS_Melanoma_13059,SP232309A01 +1,EP899038A04,EP899038A04,NYU_BMS_Melanoma_13059_P4,N18,iTru7_105_07,TGGCATGT,iTru5_123_F,TCACTCGA,NYU_BMS_Melanoma_13059,EP899038A04 +1,EP636802A01,EP636802A01,NYU_BMS_Melanoma_13059_P4,P18,iTru7_105_08,AGAAGCGT,iTru5_124_F,ACGCAGTA,NYU_BMS_Melanoma_13059,EP636802A01 +1,AP046327B02,AP046327B02,NYU_BMS_Melanoma_13059_P4,B20,iTru7_105_09,AGCGGAAT,iTru5_113_G,ATCTCCTG,NYU_BMS_Melanoma_13059,AP046327B02 +1,EP905975A04,EP905975A04,NYU_BMS_Melanoma_13059_P4,D20,iTru7_105_10,TAACCGGT,iTru5_114_G,ATGTGGAC,NYU_BMS_Melanoma_13059,EP905975A04 +1,SP410796A02,SP410796A02,NYU_BMS_Melanoma_13059_P4,F20,iTru7_105_11,CATGGAAC,iTru5_115_G,CAAGCCAA,NYU_BMS_Melanoma_13059,SP410796A02 +1,EP784608A01,EP784608A01,NYU_BMS_Melanoma_13059_P4,H20,iTru7_105_12,ATGGTCCA,iTru5_116_G,CAGACGTT,NYU_BMS_Melanoma_13059,EP784608A01 +1,EP808105A01,EP808105A01,NYU_BMS_Melanoma_13059_P4,J20,iTru7_106_01,CTTCTGAG,iTru5_117_G,CATACTCG,NYU_BMS_Melanoma_13059,EP808105A01 +1,SP331134A04,SP331134A04,NYU_BMS_Melanoma_13059_P4,L20,iTru7_106_02,AACCGAAG,iTru5_118_G,CCTGTCAA,NYU_BMS_Melanoma_13059,SP331134A04 +1,EP718688A01,EP718688A01,NYU_BMS_Melanoma_13059_P4,N20,iTru7_106_03,TTCGTACC,iTru5_119_G,CGAGTTAG,NYU_BMS_Melanoma_13059,EP718688A01 +1,SP232270A02,SP232270A02,NYU_BMS_Melanoma_13059_P4,P20,iTru7_106_04,CTGTTAGG,iTru5_120_G,CTAACCTG,NYU_BMS_Melanoma_13059,SP232270A02 +1,EP970001A01,EP970001A01,NYU_BMS_Melanoma_13059_P4,B22,iTru7_106_05,CACAAGTC,iTru5_121_G,CTCCTAGT,NYU_BMS_Melanoma_13059,EP970001A01 +1,EP001624B01,EP001624B01,NYU_BMS_Melanoma_13059_P4,D22,iTru7_106_06,TCTTGACG,iTru5_122_G,CTGTACCA,NYU_BMS_Melanoma_13059,EP001624B01 +1,EP868682A01,EP868682A01,NYU_BMS_Melanoma_13059_P4,F22,iTru7_106_07,CGTCTTGT,iTru5_123_G,GCTACAAC,NYU_BMS_Melanoma_13059,EP868682A01 +1,EP927462A02,EP927462A02,NYU_BMS_Melanoma_13059_P4,H22,iTru7_106_08,CGTGATCA,iTru5_124_G,GTTCTTCG,NYU_BMS_Melanoma_13059,EP927462A02 +1,C3,C3,NYU_BMS_Melanoma_13059_P4,J22,iTru7_106_09,CCAAGTTG,iTru5_113_H,GAGAGTAC,NYU_BMS_Melanoma_13059,C3 +1,EP890158A02,EP890158A02,NYU_BMS_Melanoma_13059_P4,L22,iTru7_106_10,GTACCTTG,iTru5_114_H,GACACAGT,NYU_BMS_Melanoma_13059,EP890158A02 +1,EP023801B04,EP023801B04,NYU_BMS_Melanoma_13059_P4,N22,iTru7_106_11,GACTATGC,iTru5_115_H,TTGCTTGG,NYU_BMS_Melanoma_13059,EP023801B04 +1,EP400447B04,EP400447B04,NYU_BMS_Melanoma_13059_P4,P22,iTru7_106_12,TGGATCAC,iTru5_116_H,GTAGTACC,NYU_BMS_Melanoma_13059,EP400447B04 +1,EP385379B01,EP385379B01,NYU_BMS_Melanoma_13059_P4,B24,iTru7_107_01,CTCTGGTT,iTru5_117_H,TTCGGCTA,NYU_BMS_Melanoma_13059,EP385379B01 +1,EP385387B01,EP385387B01,NYU_BMS_Melanoma_13059_P4,D24,iTru7_107_02,GTTCATGG,iTru5_118_H,TGCACTTG,NYU_BMS_Melanoma_13059,EP385387B01 +1,EP385384B01,EP385384B01,NYU_BMS_Melanoma_13059_P4,F24,iTru7_107_03,GCTGTAAG,iTru5_119_H,TAGAACGC,NYU_BMS_Melanoma_13059,EP385384B01 +1,SP754514A04,SP754514A04,NYU_BMS_Melanoma_13059_P4,H24,iTru7_107_04,GTCGAAGA,iTru5_120_H,GATTGTCC,NYU_BMS_Melanoma_13059,SP754514A04 +1,SP415025A01,SP415025A01,NYU_BMS_Melanoma_13059_P4,J24,iTru7_107_05,GAGCTCAA,iTru5_121_H,GATGCTAC,NYU_BMS_Melanoma_13059,SP415025A01 +1,SP415023A02,SP415023A02,NYU_BMS_Melanoma_13059_P4,L24,iTru7_107_06,TGAACCTG,iTru5_122_H,GAACGGTT,NYU_BMS_Melanoma_13059,SP415023A02 +1,EP400448B04,EP400448B04,NYU_BMS_Melanoma_13059_P4,N24,iTru7_107_07,CCGACTAT,iTru5_123_H,CTCTTGTC,NYU_BMS_Melanoma_13059,EP400448B04 +1,EP479894B04,EP479894B04,NYU_BMS_Melanoma_13059_P4,P24,iTru7_107_08,AGCTAACC,iTru5_124_H,AACGCCTT,NYU_BMS_Melanoma_13059,EP479894B04 +,,,,,,,,,, +[Bioinformatics],,,,,,,,,, +Sample_Project,QiitaID,BarcodesAreRC,ForwardAdapter,ReverseAdapter,HumanFiltering,,,,, +NYU_BMS_Melanoma_13059,13059,False,AACC,GGTT,False,,,,, +Feist_11661,11661,False,AACC,GGTT,False,,,,, +,,,,,,,,,, +[Contact],,,,,,,,,, +Email,Sample_Project,,,,,,,,, +test@lol.com,Feist_11661,,,,,,,,, +,,,,,,,,,, diff --git a/qp_klp/tests/data/pre-preps/good_pre_prep1.txt b/tests/data/pre-preps/good_pre_prep1.txt similarity index 100% rename from qp_klp/tests/data/pre-preps/good_pre_prep1.txt rename to tests/data/pre-preps/good_pre_prep1.txt diff --git a/qp_klp/tests/data/pre-preps/good_pre_prep_w_replicates.csv b/tests/data/pre-preps/good_pre_prep_w_replicates.csv similarity index 100% rename from qp_klp/tests/data/pre-preps/good_pre_prep_w_replicates.csv rename to tests/data/pre-preps/good_pre_prep_w_replicates.csv diff --git a/tests/data/pre_prep_w_replicates.csv b/tests/data/pre_prep_w_replicates.csv new file mode 100644 index 00000000..40b837f9 --- /dev/null +++ b/tests/data/pre_prep_w_replicates.csv @@ -0,0 +1,25 @@ +orig_name sample_name contains_replicates barcode primer primer_plate well_id_96 well_id_384 plating extractionkit_lot extraction_robot tm1000_8_tool primer_date mastermix_lot water_lot processing_robot tm300_8_tool tm50_8_tool sample_plate project_name well_description experiment_design_description library_construction_protocol linker platform run_center run_date run_prefix pcr_primers sequencing_meth target_gene target_subfragment center_name center_project_name instrument_model runid +9.18.19.RK.ST.900 9.18.19.RK.ST.900.A1 TRUE ATGTTAGGGAAT GTGYCAGCMGCCGCGGTAA 5 A1 A1 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.19.19.RK.ST.1100 9.19.19.RK.ST.1100.A3 True AAGTGGCTATCC GTGYCAGCMGCCGCGGTAA 5 A2 A3 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.20.19.RK.ST.700 9.20.19.RK.ST.700.A5 true GTCGTTACCCGC GTGYCAGCMGCCGCGGTAA 5 A3 A5 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.20.19.RK.ST.1100 9.20.19.RK.ST.1100.A7 tRuE AGTATATGTTTC GTGYCAGCMGCCGCGGTAA 5 A4 A7 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.21.19.RK.ST.500 9.21.19.RK.ST.500.A9 TRUE GGCTCGTCGGAG GTGYCAGCMGCCGCGGTAA 5 A5 A9 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.22.19.RK.ST.700 9.22.19.RK.ST.700.A11 TRUE GACATCTGACAC GTGYCAGCMGCCGCGGTAA 5 A6 A11 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.16.19.RK.ST.700 9.16.19.RK.ST.700.A13 TRUE AATTTCCTAACA GTGYCAGCMGCCGCGGTAA 5 A7 A13 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.16.19.RK.ST.1100 9.16.19.RK.ST.1100.A15 TRUE ATAAACGGACAT GTGYCAGCMGCCGCGGTAA 5 A8 A15 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.18.19.RK.ST.900 9.18.19.RK.ST.900.B1 TRUE ATGTTAGGGAAT GTGYCAGCMGCCGCGGTAA 5 A1 B1 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.19.19.RK.ST.1100 9.19.19.RK.ST.1100.B3 TRUE AAGTGGCTATCC GTGYCAGCMGCCGCGGTAA 5 A2 B3 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.20.19.RK.ST.700 9.20.19.RK.ST.700.B5 TRUE GTCGTTACCCGC GTGYCAGCMGCCGCGGTAA 5 A3 B5 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.20.19.RK.ST.1100 9.20.19.RK.ST.1100.B7 TRUE AGTATATGTTTC GTGYCAGCMGCCGCGGTAA 5 A4 B7 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.21.19.RK.ST.500 9.21.19.RK.ST.500.B9 TRUE GGCTCGTCGGAG GTGYCAGCMGCCGCGGTAA 5 A5 B9 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.22.19.RK.ST.700 9.22.19.RK.ST.700.B11 TRUE GACATCTGACAC GTGYCAGCMGCCGCGGTAA 5 A6 B11 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.16.19.RK.ST.700 9.16.19.RK.ST.700.B13 TRUE AATTTCCTAACA GTGYCAGCMGCCGCGGTAA 5 A7 B13 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.16.19.RK.ST.1100 9.16.19.RK.ST.1100.B15 TRUE ATAAACGGACAT GTGYCAGCMGCCGCGGTAA 5 A8 B15 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.18.19.RK.ST.900 9.18.19.RK.ST.900.A2 TRUE ATGTTAGGGAAT GTGYCAGCMGCCGCGGTAA 5 A1 A2 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.19.19.RK.ST.1100 9.19.19.RK.ST.1100.A4 TRUE AAGTGGCTATCC GTGYCAGCMGCCGCGGTAA 5 A2 A4 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.20.19.RK.ST.700 9.20.19.RK.ST.700.A6 TRUE GTCGTTACCCGC GTGYCAGCMGCCGCGGTAA 5 A3 A6 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.20.19.RK.ST.1100 9.20.19.RK.ST.1100.A8 TRUE AGTATATGTTTC GTGYCAGCMGCCGCGGTAA 5 A4 A8 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.21.19.RK.ST.500 9.21.19.RK.ST.500.A10 TRUE GGCTCGTCGGAG GTGYCAGCMGCCGCGGTAA 5 A5 A10 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.22.19.RK.ST.700 9.22.19.RK.ST.700.A12 TRUE GACATCTGACAC GTGYCAGCMGCCGCGGTAA 5 A6 A12 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.16.19.RK.ST.700 9.16.19.RK.ST.700.A14 TRUE AATTTCCTAACA GTGYCAGCMGCCGCGGTAA 5 A7 A14 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq +9.16.19.RK.ST.1100 9.16.19.RK.ST.1100.A16 TRUE ATAAACGGACAT GTGYCAGCMGCCGCGGTAA 5 A8 A16 SF 163051748 Carmen_HOWE_KF3 109379Z 12/28/22 1266015 RNBL1950 Echo550 not applicable not applicable ABTX_Plate_174 ABTX_11052 description exp design description "Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4" GT Illumina UCSDMI 3/2/23 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Sequencing by synthesis 16S rRNA V4 UCSDMI Rob ABTX Illumina MiSeq diff --git a/qp_klp/tests/data/process_all_fastq_files.sh b/tests/data/process_all_fastq_files.sh similarity index 94% rename from qp_klp/tests/data/process_all_fastq_files.sh rename to tests/data/process_all_fastq_files.sh index 3e01ff94..49f80706 100644 --- a/qp_klp/tests/data/process_all_fastq_files.sh +++ b/tests/data/process_all_fastq_files.sh @@ -106,8 +106,8 @@ function mux-runner () { -I ${r2} \ -w 2 \ --adapter_fasta fastp_known_adapters_formatted.fna \ - --html REMOVED/qp-knight-lab-processing/qp_klp/tests/data/output_dir/NuQCJob/fastp_reports_dir/html/${html_name} \ - --json REMOVED/qp-knight-lab-processing/qp_klp/tests/data/output_dir/NuQCJob/fastp_reports_dir/json/${json_name} \ + --html REMOVED/qp-knight-lab-processing/tests/data/output_dir/NuQCJob/fastp_reports_dir/html/${html_name} \ + --json REMOVED/qp-knight-lab-processing/tests/data/output_dir/NuQCJob/fastp_reports_dir/json/${json_name} \ --stdout | gzip > ${r_adapter_only} # multiplex and write adapter filtered data all at once @@ -140,7 +140,7 @@ mv ${jobd}/bar ${jobd}/seqs.interleaved.filter_alignment.fastq fastq_pair -t 50000000 ${jobd}/reads.r1.fastq ${jobd}/reads.r2.fastq # keep seqs.movi.txt and migrate it to NuQCJob directory. - mv ${jobd}/seqs.movi.txt.gz REMOVED/qp-knight-lab-processing/qp_klp/tests/data/output_dir/NuQCJob/logs/seqs.movi.${SLURM_ARRAY_TASK_ID}.txt.gz + mv ${jobd}/seqs.movi.txt.gz REMOVED/qp-knight-lab-processing/tests/data/output_dir/NuQCJob/logs/seqs.movi.${SLURM_ARRAY_TASK_ID}.txt.gz } export -f mux-runner diff --git a/tests/data/sample-convertjob.sh b/tests/data/sample-convertjob.sh new file mode 100644 index 00000000..7e1e6e0c --- /dev/null +++ b/tests/data/sample-convertjob.sh @@ -0,0 +1,15 @@ +#!/bin/bash +#SBATCH --job-name 3f6b1fe3-1f5d-4fec-af47-31a2e35fef91_ConvertJob +#SBATCH -p qiita +#SBATCH -N 1 +#SBATCH -n 16 +#SBATCH --time 180 +#SBATCH --mail-type=ALL +#SBATCH --mail-user qiita.help@gmail.com +#SBATCH --mem-per-cpu 12gb +set -x +date +hostname +cd /sequencing/igm_runs/210820_A00953_0380_BHJ53TDSX2 +module load bclconvert_3.7.5 +bcl-convert --sample-sheet "/qmounts/qiita_data/working_dir/3f6b1fe3-1f5d-4fec-af47-31a2e35fef91/2024-02-08_U19_Wisconsin_15445_reruns_NovaSeq_nonNA.csv" --output-directory /qmounts/qiita_data/working_dir/3f6b1fe3-1f5d-4fec-af47-31a2e35fef91/ConvertJob --bcl-input-directory . --bcl-num-decompression-threads 16 --bcl-num-conversion-threads 16 --bcl-num-compression-threads 16 --bcl-num-parallel-tiles 16 --bcl-sampleproject-subdirectories true --force diff --git a/qp_klp/tests/data/sample-sheets/metagenomic/illumina/bad_sheet1.csv b/tests/data/sample-sheets/metagenomic/illumina/bad_sheet1.csv similarity index 100% rename from qp_klp/tests/data/sample-sheets/metagenomic/illumina/bad_sheet1.csv rename to tests/data/sample-sheets/metagenomic/illumina/bad_sheet1.csv diff --git a/qp_klp/tests/data/sample-sheets/metagenomic/illumina/bad_sheet2.csv b/tests/data/sample-sheets/metagenomic/illumina/bad_sheet2.csv similarity index 100% rename from qp_klp/tests/data/sample-sheets/metagenomic/illumina/bad_sheet2.csv rename to tests/data/sample-sheets/metagenomic/illumina/bad_sheet2.csv diff --git a/qp_klp/tests/data/sample-sheets/metagenomic/illumina/good_sheet1.csv b/tests/data/sample-sheets/metagenomic/illumina/good_sheet1.csv similarity index 100% rename from qp_klp/tests/data/sample-sheets/metagenomic/illumina/good_sheet1.csv rename to tests/data/sample-sheets/metagenomic/illumina/good_sheet1.csv diff --git a/qp_klp/tests/data/sample-sheets/metagenomic/illumina/good_sheet2.csv b/tests/data/sample-sheets/metagenomic/illumina/good_sheet2.csv similarity index 100% rename from qp_klp/tests/data/sample-sheets/metagenomic/illumina/good_sheet2.csv rename to tests/data/sample-sheets/metagenomic/illumina/good_sheet2.csv diff --git a/qp_klp/tests/data/sample-sheets/metagenomic/illumina/good_sheet_mini.csv b/tests/data/sample-sheets/metagenomic/illumina/good_sheet_mini.csv similarity index 100% rename from qp_klp/tests/data/sample-sheets/metagenomic/illumina/good_sheet_mini.csv rename to tests/data/sample-sheets/metagenomic/illumina/good_sheet_mini.csv diff --git a/qp_klp/tests/data/sample-sheets/metagenomic/illumina/good_sheet_w_replicates.csv b/tests/data/sample-sheets/metagenomic/illumina/good_sheet_w_replicates.csv similarity index 100% rename from qp_klp/tests/data/sample-sheets/metagenomic/illumina/good_sheet_w_replicates.csv rename to tests/data/sample-sheets/metagenomic/illumina/good_sheet_w_replicates.csv diff --git a/qp_klp/tests/data/sample-sheets/metagenomic/tellseq/good_sheet1.csv b/tests/data/sample-sheets/metagenomic/tellseq/good_sheet1.csv similarity index 100% rename from qp_klp/tests/data/sample-sheets/metagenomic/tellseq/good_sheet1.csv rename to tests/data/sample-sheets/metagenomic/tellseq/good_sheet1.csv diff --git a/qp_klp/tests/data/sample-sheets/metagenomic/tellseq/good_sheet_absquant1.csv b/tests/data/sample-sheets/metagenomic/tellseq/good_sheet_absquant1.csv similarity index 100% rename from qp_klp/tests/data/sample-sheets/metagenomic/tellseq/good_sheet_absquant1.csv rename to tests/data/sample-sheets/metagenomic/tellseq/good_sheet_absquant1.csv diff --git a/qp_klp/tests/data/sample-sheets/metatranscriptomic/illumina/good_sheet1.csv b/tests/data/sample-sheets/metatranscriptomic/illumina/good_sheet1.csv similarity index 100% rename from qp_klp/tests/data/sample-sheets/metatranscriptomic/illumina/good_sheet1.csv rename to tests/data/sample-sheets/metatranscriptomic/illumina/good_sheet1.csv diff --git a/qp_klp/tests/data/sample_fastp.json b/tests/data/sample_fastp.json similarity index 100% rename from qp_klp/tests/data/sample_fastp.json rename to tests/data/sample_fastp.json diff --git a/tests/data/sample_run_directories/150629_SN1001_0511_AH5L7GBCXX/RTAComplete.txt b/tests/data/sample_run_directories/150629_SN1001_0511_AH5L7GBCXX/RTAComplete.txt new file mode 100755 index 00000000..ebe27ffa --- /dev/null +++ b/tests/data/sample_run_directories/150629_SN1001_0511_AH5L7GBCXX/RTAComplete.txt @@ -0,0 +1 @@ +7/1/2015,05:12:25.107,Illumina RTA 1.18.64 diff --git a/tests/data/sample_run_directories/150629_SN1001_0511_AH5L7GBCXX/RunInfo.xml b/tests/data/sample_run_directories/150629_SN1001_0511_AH5L7GBCXX/RunInfo.xml new file mode 100755 index 00000000..0e511c95 --- /dev/null +++ b/tests/data/sample_run_directories/150629_SN1001_0511_AH5L7GBCXX/RunInfo.xml @@ -0,0 +1,18 @@ + + + + H5L7GBCXX + SN1001 + 150629 + + + + + + + + 1 + 2 + + + \ No newline at end of file diff --git a/tests/data/sample_run_directories/150629_SN1001_0511_AH5L7GBCXX/runParameters.xml b/tests/data/sample_run_directories/150629_SN1001_0511_AH5L7GBCXX/runParameters.xml new file mode 100755 index 00000000..678bc142 --- /dev/null +++ b/tests/data/sample_run_directories/150629_SN1001_0511_AH5L7GBCXX/runParameters.xml @@ -0,0 +1,141 @@ + + + + 2015_06_29_knight625 + -999 + A + CUSTOM + true + 151 + 12 + 0 + 151 + Z:\Illumina_HiSeq + false + + Save All Thumbnails + HiSeq Rapid Flow Cell v2 + false + + false + HiSeq Rapid SBS Kit v2 + HiSeq Rapid PE Cluster Kit v2 + HiSeq Rapid PE Cluster Kit v2 + + 1 + 2 + + CBotTemplateHybridization + RapidRunV2 + RapidRun + None + false + false + HiSeq Control Software + 2.2.58 + 150629_SN1001_0511_AH5L7GBCXX + 150629 + Standalone + + + + + false + false + false + + SN1001 + 511 + DGZN8DQ1 + 3.10.3 + 3.0.14 + 1.18.64 + Illumina,Bruno Fluidics Controller,0,v2.0340 + 3.00-F22 + 5.57.4.3277 + + H5L7GBCXX + H22GNBCXX + SBSUser + +
+
+ + DynamicITF + BothLaneSurfaces + DualSwathFC + true + true + true + true + true + false + HiSeq Adapter Plate + HiSeq Flow Cell Holder + 5 + 8 + + 3 + 7 + 0 + 500 + 500 + 250 + 350 + 25 + 0 + 100 + 50 + 20 + 65535 + 100 + 4 + + 2048 + 10000 + 2048 + 160000 + 1.40625E-07 + 60 + 16 + 2 + false + + + + + + false + + + + xx + false + 525 + false + false + true + + + + + xx + + + + + + + + + false + 0 + true + D:\Illumina\HiSeqTemp\150629_SN1001_0511_AH5L7GBCXX + 1.5.21.0 + false + false + + + 1 + \ No newline at end of file diff --git a/tests/data/sample_run_directories/190809_D00611_0709_AH3CKJBCX3_RKL0040_Feist_36-39_2/2019_08_02_Feist_36-39_pool2_samplesheet.csv b/tests/data/sample_run_directories/190809_D00611_0709_AH3CKJBCX3_RKL0040_Feist_36-39_2/2019_08_02_Feist_36-39_pool2_samplesheet.csv new file mode 100644 index 00000000..5725d078 --- /dev/null +++ b/tests/data/sample_run_directories/190809_D00611_0709_AH3CKJBCX3_RKL0040_Feist_36-39_2/2019_08_02_Feist_36-39_pool2_samplesheet.csv @@ -0,0 +1,409 @@ +# PI,Knight,robknight@ucsd.edu +# Contact,Gail Ackermann,Greg Humphrey,Jeff Dereus,Jon Sanders +# ,ackermag@ucsd.edu,ghsmu414@gmail.com,jdereus@ucsd.edu,jonsan@gmail.com +[Header] +IEMFileVersion,4 +Investigator Name,Knight,, +Experiment Name,RKL0039,, +Date,2019-08-02,, +Workflow,GenerateFASTQ,, +Application,FASTQ Only +Assay,Metagenomics +Description, +Chemistry,Default + +[Reads] +150 +150 + +[Settings] +ReverseComplement,0 + +[Data] +Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,I5_Index_ID,index2,Sample_Project,Well_description +1,MDL-233,MDL-233,Feist_11661_P37,A10,iTru7_203_05,TCGAACCA,iTru5_21_C,AAGCTGGT,Feist_11661,MDL-233 +1,MDL-083,MDL-083,Feist_11661_P39,H10,iTru7_101_08,CCTATGGT,iTru5_124_C,GTCTCATC,Feist_11661,MDL-083 +1,MDL-236,MDL-236,Feist_11661_P37,G10,iTru7_203_08,GACAAGAG,iTru5_24_C,CTCGACTT,Feist_11661,MDL-236 +1,MDL-303,MDL-303,Feist_11661_P38,B5,iTru7_210_01,CAGTCCAA,iTru5_105_B,GGATGTAG,Feist_11661,MDL-303 +1,MDL-232,MDL-232,Feist_11661_P37,O8,iTru7_203_04,CGTTGAGT,iTru5_20_C,GACCGATA,Feist_11661,MDL-232 +1,MDL-223,MDL-223,Feist_11661_P37,M6,iTru7_202_07,GAGTCTCT,iTru5_23_B,ATCATGCG,Feist_11661,MDL-223 +1,MDL-270,MDL-270,Feist_11661_P37,K18,iTru7_206_06,AACGACGT,iTru5_22_F,TTGGTGCA,Feist_11661,MDL-270 +1,MDL-067,MDL-067,Feist_11661_P39,H6,iTru7_115_04,CTGACACA,iTru5_120_B,TAACGTCG,Feist_11661,MDL-067 +1,MDL-205,MDL-205,Feist_11661_P37,I2,iTru7_201_01,CTTGGATG,iTru5_17_A,CCAGTATC,Feist_11661,MDL-205 +1,MDL-226,MDL-226,Feist_11661_P37,C8,iTru7_202_10,GGACTGTT,iTru5_14_C,AACAAGGC,Feist_11661,MDL-226 +1,MDL-295,MDL-295,Feist_11661_P38,B3,iTru7_209_05,TACCACAG,iTru5_109_A,AGCGAGAT,Feist_11661,MDL-295 +1,MDL-097,MDL-097,Feist_11661_P39,D14,iTru7_102_10,GTTAAGGC,iTru5_114_E,ATGGCGAT,Feist_11661,MDL-097 +1,MDL-092,MDL-092,Feist_11661_P39,J12,iTru7_102_05,TCACGTTC,iTru5_121_D,TAGCAGGA,Feist_11661,MDL-092 +1,MDL-098,MDL-098,Feist_11661_P39,F14,iTru7_102_11,AAGCCACA,iTru5_115_E,CAAGAAGC,Feist_11661,MDL-098 +1,MDL-267,MDL-267,Feist_11661_P37,E18,iTru7_206_03,GGTAGTGT,iTru5_19_F,TGGCTCTT,Feist_11661,MDL-267 +1,MDL-212,MDL-212,Feist_11661_P37,G4,iTru7_201_08,TACACGCT,iTru5_24_A,CGAGAGAA,Feist_11661,MDL-212 +1,MDL-082,MDL-082,Feist_11661_P39,F10,iTru7_101_07,ACTCGTTG,iTru5_123_C,CTTCCTTC,Feist_11661,MDL-082 +1,MDL-137,MDL-137,Feist_11661_P39,N22,iTru7_105_11,CATGGAAC,iTru5_115_H,TTGCTTGG,Feist_11661,MDL-137 +1,SM71PII,SM71PII,Feist_11661_P36,C15,iTru7_111_06,CATGAGGA,iTru5_10_E,AACCAGAG,Feist_11661,SM71PII +1,SM35KA,SM35KA,Feist_11661_P36,I5,iTru7_108_05,TCTGAGAG,iTru5_09_B,ACGGACTT,Feist_11661,SM35KA +1,MDL-244,MDL-244,Feist_11661_P37,G12,iTru7_204_04,GGCAAGTT,iTru5_20_D,CGGCATTA,Feist_11661,MDL-244 +1,MDL-194,MDL-194,Feist_11661_P36,K21,iTru7_113_10,TCAACTGG,iTru5_02_H,TTCGAAGC,Feist_11661,MDL-194 +1,MDL-238,MDL-238,Feist_11661_P37,K10,iTru7_203_10,GCTTAGCT,iTru5_14_D,ACAGTTCG,Feist_11661,MDL-238 +1,MDL-059,MDL-059,Feist_11661_P39,J4,iTru7_402_09,ACTGAGGT,iTru5_113_B,TCTGTCGT,Feist_11661,MDL-059 +1,MDL-237,MDL-237,Feist_11661_P37,I10,iTru7_203_09,GAACACAC,iTru5_13_D,ATCCACGA,Feist_11661,MDL-237 +1,MDL-262,MDL-262,Feist_11661_P37,K16,iTru7_205_10,CACCTGTT,iTru5_14_F,CCAACACT,Feist_11661,MDL-262 +1,MDL-046,MDL-046,Feist_11661_P39,F2,iTru7_401_11,CCTGTCAT,iTru5_115_A,CAACACAG,Feist_11661,MDL-046 +1,SM30KA,SM30KA,Feist_11661_P36,O3,iTru7_107_12,AAGGCTGA,iTru5_04_B,CGTCAAGA,Feist_11661,SM30KA +1,MDL-322,MDL-322,Feist_11661_P38,H9,iTru7_301_08,CGACCATT,iTru5_112_C,AGTGACCT,Feist_11661,MDL-322 +1,MDL-317,MDL-317,Feist_11661_P38,N7,iTru7_301_03,AGTCGACA,iTru5_107_C,AGAAGCCT,Feist_11661,MDL-317 +1,MDL-216,MDL-216,Feist_11661_P37,O4,iTru7_201_12,GTTGTAGC,iTru5_16_B,CCTATTGG,Feist_11661,MDL-216 +1,MDL-225,MDL-225,Feist_11661_P37,A8,iTru7_202_09,CAGTCTTC,iTru5_13_C,CGCAATGT,Feist_11661,MDL-225 +1,MDL-251,MDL-251,Feist_11661_P37,E14,iTru7_204_11,CCGTAAGA,iTru5_15_E,TGATAGGC,Feist_11661,MDL-251 +1,MDL-308,MDL-308,Feist_11661_P38,L5,iTru7_210_06,CTAGGTGA,iTru5_110_B,TACTAGCG,Feist_11661,MDL-308 +1,MDL-078,MDL-078,Feist_11661_P39,N8,iTru7_101_03,TGAGGTGT,iTru5_119_C,CGAACAAC,Feist_11661,MDL-078 +1,SM42LS,SM42LS,Feist_11661_P36,I7,iTru7_109_01,CTCGTCTT,iTru5_05_C,GCCAATAC,Feist_11661,SM42LS +1,MDL-208,MDL-208,Feist_11661_P37,O2,iTru7_201_04,TTGACAGG,iTru5_20_A,TGATCACG,Feist_11661,MDL-208 +1,SM68PII,SM68PII,Feist_11661_P36,M13,iTru7_111_03,TGGAGAGT,iTru5_07_E,AGCTAGTG,Feist_11661,SM68PII +1,MDL-326,MDL-326,Feist_11661_P38,P9,iTru7_301_12,ATACTCCG,iTru5_104_D,TGGTTCGA,Feist_11661,MDL-326 +1,MDL-279,MDL-279,Feist_11661_P37,M20,iTru7_207_03,TGCTTCCA,iTru5_19_G,CTCTATCG,Feist_11661,MDL-279 +1,MDL-186,MDL-186,Feist_11661_P37,I12,iTru7_204_05,ACCATGTG,iTru5_21_D,ACTCGATC,Feist_11661,MDL-186 +1,SM59PII,SM59PII,Feist_11661_P36,K11,iTru7_110_06,CACCACTA,iTru5_10_D,AAGGCTCT,Feist_11661,SM59PII +1,MDL-315,MDL-315,Feist_11661_P38,J7,iTru7_301_01,GTGGTGTT,iTru5_105_C,ACGAATCC,Feist_11661,MDL-315 +1,MDL-252,MDL-252,Feist_11661_P37,G14,iTru7_204_12,ATCGGTGT,iTru5_16_E,ATGCGTCA,Feist_11661,MDL-252 +1,MDL-30,MDL-30,Feist_11661_P38,F21,iTru7_305_07,GAGATACG,iTru5_111_G,AGTATGCC,Feist_11661,MDL-30 +1,MDL-263,MDL-263,Feist_11661_P37,M16,iTru7_205_11,ATCCGGTA,iTru5_15_F,CTTCACTG,Feist_11661,MDL-263 +1,MDL-323,MDL-323,Feist_11661_P38,J9,iTru7_301_09,CTGAAGCT,iTru5_101_D,GGTTAGCT,Feist_11661,MDL-323 +1,MDL-247,MDL-247,Feist_11661_P37,M12,iTru7_204_07,CAATCGAC,iTru5_23_D,CAGTCACA,Feist_11661,MDL-247 +1,MDL-258,MDL-258,Feist_11661_P37,C16,iTru7_205_06,GCCATAAC,iTru5_22_E,ACCATAGG,Feist_11661,MDL-258 +1,SM41LS,SM41LS,Feist_11661_P36,G7,iTru7_108_12,TGTTCGAG,iTru5_04_C,CCATGAAC,Feist_11661,SM41LS +1,SM46LS,SM46LS,Feist_11661_P36,A9,iTru7_109_05,AAGTCGAG,iTru5_09_C,GTTGCTGT,Feist_11661,SM46LS +1,MDL-319,MDL-319,Feist_11661_P38,B9,iTru7_301_05,GACATTCC,iTru5_109_C,AGCGTGTA,Feist_11661,MDL-319 +1,MDL-228,MDL-228,Feist_11661_P37,G8,iTru7_202_12,ATTGCGTG,iTru5_16_C,AATCCAGC,Feist_11661,MDL-228 +1,MDL-169,MDL-169,Feist_11661_P36,K15,iTru7_111_10,AGAACGAG,iTru5_02_F,AACACGCT,Feist_11661,MDL-169 +1,MDL-123,MDL-123,Feist_11661_P39,H20,iTru7_104_12,GAACATCG,iTru5_116_G,CAGACGTT,Feist_11661,MDL-123 +1,MDL-119,MDL-119,Feist_11661_P39,P18,iTru7_104_08,GCAAGATC,iTru5_124_F,ACGCAGTA,Feist_11661,MDL-119 +1,SM38LS-1,SM38LS-1,Feist_11661_P36,O5,iTru7_108_08,CAGGTATC,iTru5_12_B,ATCTGACC,Feist_11661,SM38LS-1 +1,MDL-296,MDL-296,Feist_11661_P38,D3,iTru7_209_06,ATTCGAGG,iTru5_110_A,AGGATAGC,Feist_11661,MDL-296 +1,MDL-287,MDL-287,Feist_11661_P38,B1,iTru7_208_09,TTGGTGAG,iTru5_101_A,AACAACCG,Feist_11661,MDL-287 +1,SM54JS,SM54JS,Feist_11661_P36,A11,iTru7_110_01,ATGACCAG,iTru5_05_D,CTGTATGC,Feist_11661,SM54JS +1,MDL-088,MDL-088,Feist_11661_P39,B12,iTru7_102_01,ATAAGGCG,iTru5_117_D,GTATCGAG,Feist_11661,MDL-088 +1,MDL-304,MDL-304,Feist_11661_P38,D5,iTru7_210_02,TCGTAGTC,iTru5_106_B,GTCCTGTT,Feist_11661,MDL-304 +1,P_putida_17390,P_putida_17390,Feist_11661_P37,A24,iTru7_208_01,ATGACGTC,iTru5_17_H,AATTCCGG,Feist_11661,P.putida_17390 +1,P_putida_17502,P_putida_17502,Feist_11661_P37,C24,iTru7_208_02,AACCTTGG,iTru5_18_H,GGCGAATA,Feist_11661,P.putida_17502 +1,P_putida_23484,P_putida_23484,Feist_11661_P37,E24,iTru7_208_03,GTCTTGCA,iTru5_19_H,AGGAGGTT,Feist_11661,P.putida_23484 +1,P_putida_39004,P_putida_39004,Feist_11661_P37,G24,iTru7_208_04,CAAGTGCA,iTru5_20_H,ACTCTGAG,Feist_11661,P.putida_39004 +1,SM44LS,SM44LS,Feist_11661_P36,M7,iTru7_109_03,CATTCGGT,iTru5_07_C,AACCGAAC,Feist_11661,SM44LS +1,MDL-222,MDL-222,Feist_11661_P37,K6,iTru7_202_06,ACTCTCGA,iTru5_22_B,GAACGTGA,Feist_11661,MDL-222 +1,MDL-269,MDL-269,Feist_11661_P37,I18,iTru7_206_05,AACGTGGA,iTru5_21_F,GGACATCA,Feist_11661,MDL-269 +1,MDL-135,MDL-135,Feist_11661_P39,J22,iTru7_105_09,AGCGGAAT,iTru5_113_H,GAGAGTAC,Feist_11661,MDL-135 +1,MDL-275,MDL-275,Feist_11661_P37,E20,iTru7_206_11,GTCACTGT,iTru5_15_G,GCCTATGT,Feist_11661,MDL-275 +1,MDL-293,MDL-293,Feist_11661_P38,N1,iTru7_209_03,CCTGATTG,iTru5_107_A,ACTGGTGT,Feist_11661,MDL-293 +1,SM33KA,SM33KA,Feist_11661_P36,E5,iTru7_108_03,GAAGGTTC,iTru5_07_B,GATACCTG,Feist_11661,SM33KA +1,MDL-242,MDL-242,Feist_11661_P37,C12,iTru7_204_02,GTAGCATC,iTru5_18_D,CATCAACC,Feist_11661,MDL-242 +1,MDL-080,MDL-080,Feist_11661_P39,B10,iTru7_101_05,GCCTATCA,iTru5_121_C,CTATGCCT,Feist_11661,MDL-080 +1,MDL-070,MDL-070,Feist_11661_P39,N6,iTru7_115_07,CACTAGCT,iTru5_123_B,GCAACCAT,Feist_11661,MDL-070 +1,MDL-095,MDL-095,Feist_11661_P39,P12,iTru7_102_08,AAGAGCCA,iTru5_124_D,AAGAGGCA,Feist_11661,MDL-095 +1,MDL-256,MDL-256,Feist_11661_P37,O14,iTru7_205_04,GGACAATC,iTru5_20_E,GTGATCCA,Feist_11661,MDL-256 +1,MDL-277,MDL-277,Feist_11661_P37,I20,iTru7_207_01,CACGTTGT,iTru5_17_G,CGGATCAA,Feist_11661,MDL-277 +1,MDL-239,MDL-239,Feist_11661_P37,M10,iTru7_203_11,GAAGGAAG,iTru5_15_D,ACAAGACG,Feist_11661,MDL-239 +1,MDL-268,MDL-268,Feist_11661_P37,G18,iTru7_206_04,TCGCTGTT,iTru5_20_F,AAGACCGT,Feist_11661,MDL-268 +1,MDL-292,MDL-292,Feist_11661_P38,L1,iTru7_209_02,ACACCAGT,iTru5_106_A,ACGTCCAA,Feist_11661,MDL-292 +1,SM62PII,SM62PII,Feist_11661_P36,A13,iTru7_110_09,GGCGTTAT,iTru5_01_E,GACTTGTG,Feist_11661,SM62PII +1,MDL-206,MDL-206,Feist_11661_P37,K2,iTru7_201_02,CAGTTGGA,iTru5_18_A,ACGCTTCT,Feist_11661,MDL-206 +1,MDL-094,MDL-094,Feist_11661_P39,N12,iTru7_102_07,TAGTTGCG,iTru5_123_D,GACGTCAT,Feist_11661,MDL-094 +1,MDL-305,MDL-305,Feist_11661_P38,F3,iTru7_209_07,GCACGTAA,iTru5_111_A,AGGTGTTG,Feist_11661,MDL-305 +1,MDL-230,MDL-230,Feist_11661_P37,K8,iTru7_203_02,CTTGCTGT,iTru5_18_C,ACCTTCGA,Feist_11661,MDL-230 +1,MDL-25,MDL-25,Feist_11661_P38,P19,iTru7_305_04,CGTACGAA,iTru5_108_G,AGCCTATC,Feist_11661,MDL-25 +1,MDL-215,MDL-215,Feist_11661_P37,M4,iTru7_201_11,TCGACATC,iTru5_15_B,AACCGTGT,Feist_11661,MDL-215 +1,SM66PII,SM66PII,Feist_11661_P36,I13,iTru7_111_01,CGATAGAG,iTru5_05_E,CTTAGGAC,Feist_11661,SM66PII +1,MDL-183,MDL-183,Feist_11661_P36,G19,iTru7_112_12,ACGATGAC,iTru5_04_G,TCGAACCT,Feist_11661,MDL-183 +1,SM56JS,SM56JS,Feist_11661_P36,E11,iTru7_110_03,TCCAATCG,iTru5_07_D,GCTGAATC,Feist_11661,SM56JS +1,MDL-278,MDL-278,Feist_11661_P37,K20,iTru7_207_02,TATTCCGG,iTru5_18_G,CCACATTG,Feist_11661,MDL-278 +1,SM17LS,SM17LS,Feist_11661_P36,E1,iTru7_106_11,GACTATGC,iTru5_03_A,AACACCAC,Feist_11661,SM17LS +1,MDL-219,MDL-219,Feist_11661_P37,E6,iTru7_202_03,TTGCAGAC,iTru5_19_B,ATGCCTAG,Feist_11661,MDL-219 +1,MDL-250,MDL-250,Feist_11661_P37,C14,iTru7_204_10,ACCTTCTC,iTru5_14_E,AATCGCTG,Feist_11661,MDL-250 +1,SM48LS,SM48LS,Feist_11661_P36,E9,iTru7_109_07,TATTCGCC,iTru5_11_C,GACGAACT,Feist_11661,SM48LS +1,SM72PII,SM72PII,Feist_11661_P36,E15,iTru7_111_07,CGGTTGTT,iTru5_11_E,CGCCTTAT,Feist_11661,SM72PII +1,MDL-104,MDL-104,Feist_11661_P39,B16,iTru7_103_05,GCATGTCT,iTru5_121_E,CTCAAGCT,Feist_11661,MDL-104 +1,MDL-203,MDL-203,Feist_11661_P37,E2,iTru7_114_11,ACATAGGC,iTru5_15_A,CGACCTAA,Feist_11661,MDL-203 +1,MDL-298,MDL-298,Feist_11661_P38,H3,iTru7_209_08,GTGTGACA,iTru5_112_A,AGTCTTGG,Feist_11661,MDL-298 +1,MDL-10,MDL-10,Feist_11661_P38,N17,iTru7_304_07,GGATTCGT,iTru5_111_F,TAAGTGGC,Feist_11661,MDL-10 +1,SM27KA,SM27KA,Feist_11661_P36,I3,iTru7_107_09,GCCTTGTT,iTru5_01_B,AGTGGCAA,Feist_11661,SM27KA +1,MDL-321,MDL-321,Feist_11661_P38,F9,iTru7_301_07,TAATGCCG,iTru5_111_C,AGGTTCCT,Feist_11661,MDL-321 +1,MDL-231,MDL-231,Feist_11661_P37,M8,iTru7_203_03,GTTGTTCG,iTru5_19_C,CATACGGA,Feist_11661,MDL-231 +1,MDL-344,MDL-344,Feist_11661_P38,D15,iTru7_303_06,GAGTGGTT,iTru5_110_E,AGGTAGGA,Feist_11661,MDL-344 +1,MDL-31,MDL-31,Feist_11661_P38,H21,iTru7_305_08,CGACGTTA,iTru5_112_G,AGTTCGCA,Feist_11661,MDL-31 +1,SM69PII,SM69PII,Feist_11661_P36,O13,iTru7_111_04,TCAGACGA,iTru5_08_E,GAACGAAG,Feist_11661,SM69PII +1,SM55JS,SM55JS,Feist_11661_P36,C11,iTru7_110_02,AACCGTTC,iTru5_06_D,TCGACAAG,Feist_11661,SM55JS +1,MDL-075,MDL-075,Feist_11661_P39,H8,iTru7_211_01,GCTTCTTG,iTru5_116_C,CACTTCAC,Feist_11661,MDL-075 +1,MDL-122,MDL-122,Feist_11661_P39,F20,iTru7_104_11,CTGGAGTA,iTru5_115_G,CAAGCCAA,Feist_11661,MDL-122 +1,SM60PII,SM60PII,Feist_11661_P36,M11,iTru7_110_07,ACAGCAAC,iTru5_11_D,CCTAACAG,Feist_11661,SM60PII +1,SM25LS,SM25LS,Feist_11661_P36,E3,iTru7_107_07,CCGACTAT,iTru5_11_A,CAATAGCC,Feist_11661,SM25LS +1,MDL-261,MDL-261,Feist_11661_P37,I16,iTru7_205_09,TGACTGAC,iTru5_13_F,TCGATGAC,Feist_11661,MDL-261 +1,MDL-229,MDL-229,Feist_11661_P37,I8,iTru7_203_01,GTAACGAC,iTru5_17_C,TTGCAACG,Feist_11661,MDL-229 +1,MDL-285,MDL-285,Feist_11661_P37,I22,iTru7_207_09,ACACACTC,iTru5_13_H,GCTTCACA,Feist_11661,MDL-285 +1,MDL-318,MDL-318,Feist_11661_P38,P7,iTru7_301_04,GTGAGCTT,iTru5_108_C,AGATTGCG,Feist_11661,MDL-318 +1,MDL-311,MDL-311,Feist_11661_P38,B7,iTru7_210_09,CGTATTCG,iTru5_101_C,AACAGCGA,Feist_11661,MDL-311 +1,MDL-243,MDL-243,Feist_11661_P37,E12,iTru7_204_03,TCGTTCGT,iTru5_19_D,GGTCACTA,Feist_11661,MDL-243 +1,MDL-286,MDL-286,Feist_11661_P37,K22,iTru7_207_10,CCACTTCT,iTru5_14_H,CTTCGGTT,Feist_11661,MDL-286 +1,SM51JS,SM51JS,Feist_11661_P36,K9,iTru7_109_10,TGGCACTA,iTru5_02_D,AGACGCTA,Feist_11661,SM51JS +1,MDL-14,MDL-14,Feist_11661_P38,D19,iTru7_304_10,CGTGTGTA,iTru5_102_G,AAGGAAGG,Feist_11661,MDL-14 +1,SM47LS,SM47LS,Feist_11661_P36,C9,iTru7_109_06,TATCGGTC,iTru5_10_C,TCTAGTCC,Feist_11661,SM47LS +1,SM40LS,SM40LS,Feist_11661_P36,E7,iTru7_108_11,CCAAGCAA,iTru5_03_C,CACAGGAA,Feist_11661,SM40LS +1,SM37LS,SM37LS,Feist_11661_P36,M5,iTru7_108_07,GAAGTACC,iTru5_11_B,TGCCTCAA,Feist_11661,SM37LS +1,MDL-294,MDL-294,Feist_11661_P38,P1,iTru7_209_04,TTGTGTGC,iTru5_108_A,AGATCGTC,Feist_11661,MDL-294 +1,MDL-224,MDL-224,Feist_11661_P37,O6,iTru7_202_08,CAACACCT,iTru5_24_B,CAACGAGT,Feist_11661,MDL-224 +1,MDL-185,MDL-185,Feist_11661_P36,K19,iTru7_113_02,GATACTGG,iTru5_06_G,GATCTTGC,Feist_11661,MDL-185 +1,MDL-302,MDL-302,Feist_11661_P38,P3,iTru7_209_12,GGTACTAC,iTru5_104_B,GGTGTACA,Feist_11661,MDL-302 +1,MDL-213,MDL-213,Feist_11661_P37,I4,iTru7_201_09,TACGGTTG,iTru5_13_B,CATTGACG,Feist_11661,MDL-213 +1,MDL-187,MDL-187,Feist_11661_P36,M19,iTru7_113_03,CTACTTGG,iTru5_07_G,GTTAAGCG,Feist_11661,MDL-187 +1,MDL-4,MDL-4,Feist_11661_P38,F17,iTru7_304_03,ATCGATCG,iTru5_107_F,TCTACGCA,Feist_11661,MDL-4 +1,MDL-349,MDL-349,Feist_11661_P38,N15,iTru7_303_11,CTAACTCG,iTru5_103_F,GGCATTCT,Feist_11661,MDL-349 +1,SM29KA,SM29KA,Feist_11661_P36,M3,iTru7_107_11,CAATGTGG,iTru5_03_B,TGAGCTGT,Feist_11661,SM29KA +1,SM43LS,SM43LS,Feist_11661_P36,K7,iTru7_109_02,CGAACTGT,iTru5_06_C,AGCTACCA,Feist_11661,SM43LS +1,MDL-310,MDL-310,Feist_11661_P38,P5,iTru7_210_08,CTTACAGC,iTru5_112_B,GAATCACC,Feist_11661,MDL-310 +1,MDL-214,MDL-214,Feist_11661_P37,K4,iTru7_201_10,GGATACCA,iTru5_14_B,GGTGATGA,Feist_11661,MDL-214 +1,SM26KA,SM26KA,Feist_11661_P36,G3,iTru7_107_08,AGCTAACC,iTru5_12_A,CATTCGTC,Feist_11661,SM26KA +1,P_putida_13795,P_putida_13795,Feist_11661_P37,O22,iTru7_207_12,CTCATCAG,iTru5_16_H,GTCAACAG,Feist_11661,P.putida_13795 +1,SM53JS,SM53JS,Feist_11661_P36,O9,iTru7_109_12,AACCTCCT,iTru5_04_D,GGTACTTC,Feist_11661,SM53JS +1,MDL-227,MDL-227,Feist_11661_P37,E8,iTru7_202_11,CTTAGTGG,iTru5_15_C,ACCATGTC,Feist_11661,MDL-227 +1,SM63PII,SM63PII,Feist_11661_P36,C13,iTru7_110_10,CTGTTGAC,iTru5_02_E,CAACTCCA,Feist_11661,SM63PII +1,MDL-276,MDL-276,Feist_11661_P37,G20,iTru7_206_12,ATGCCAAC,iTru5_16_G,CCGTAACT,Feist_11661,MDL-276 +1,MDL-314,MDL-314,Feist_11661_P38,H7,iTru7_210_12,TACATCGG,iTru5_104_C,ACACCGAT,Feist_11661,MDL-314 +1,SM58JS,SM58JS,Feist_11661_P36,I11,iTru7_110_05,CGCTTAAC,iTru5_09_D,TGTCGACT,Feist_11661,SM58JS +1,MDL-291,MDL-291,Feist_11661_P38,J1,iTru7_209_01,GACTTAGG,iTru5_105_A,ACGAACGA,Feist_11661,MDL-291 +1,SM49LS,SM49LS,Feist_11661_P36,G9,iTru7_109_08,GTATTGGC,iTru5_12_C,TTCGTACG,Feist_11661,SM49LS +1,MDL-324,MDL-324,Feist_11661_P38,L9,iTru7_301_10,TTGAGGCA,iTru5_102_D,GTAGCGTA,Feist_11661,MDL-324 +1,MDL-134,MDL-134,Feist_11661_P39,H22,iTru7_105_08,AGAAGCGT,iTru5_124_G,GTTCTTCG,Feist_11661,MDL-134 +1,SM65PII,SM65PII,Feist_11661_P36,G13,iTru7_110_12,TGACTTCG,iTru5_04_E,ACCGCTAT,Feist_11661,SM65PII +1,MDL-313,MDL-313,Feist_11661_P38,F7,iTru7_210_11,TACCAGGA,iTru5_103_C,AAGGCGTA,Feist_11661,MDL-313 +1,MDL-193,MDL-193,Feist_11661_P36,I21,iTru7_113_09,TCAAGGAC,iTru5_01_H,TAGCTGAG,Feist_11661,MDL-193 +1,SM64PII,SM64PII,Feist_11661_P36,E13,iTru7_110_11,GTCATCGA,iTru5_03_E,TGTTCCGT,Feist_11661,SM64PII +1,SM50JS,SM50JS,Feist_11661_P36,I9,iTru7_109_09,AGTCGCTT,iTru5_01_D,CGACACTT,Feist_11661,SM50JS +1,MDL-348,MDL-348,Feist_11661_P38,L15,iTru7_303_10,ATTCCTCC,iTru5_102_F,GTCGATTG,Feist_11661,MDL-348 +1,SM74PII,SM74PII,Feist_11661_P36,I15,iTru7_111_09,TGTGGTAC,iTru5_01_F,GTGAGACT,Feist_11661,SM74PII +1,MDL-171,MDL-171,Feist_11661_P36,O15,iTru7_111_12,CCAATAGG,iTru5_04_F,TTCCAGGT,Feist_11661,MDL-171 +1,MDL-312,MDL-312,Feist_11661_P38,D7,iTru7_210_10,ATTCTGGC,iTru5_102_C,AAGCGACT,Feist_11661,MDL-312 +1,MDL-307,MDL-307,Feist_11661_P38,J5,iTru7_210_05,TGCAGGTA,iTru5_109_B,GAGCTCTA,Feist_11661,MDL-307 +1,MDL-297,MDL-297,Feist_11661_P38,F5,iTru7_210_03,TCGAGTGA,iTru5_107_B,GTACCACA,Feist_11661,MDL-297 +1,MDL-096,MDL-096,Feist_11661_P39,B14,iTru7_102_09,ACAGCTCA,iTru5_113_E,ATCGTCTC,Feist_11661,MDL-096 +1,MDL-316,MDL-316,Feist_11661_P38,L7,iTru7_301_02,CGCATGAT,iTru5_106_C,ACTACGGT,Feist_11661,MDL-316 +1,SM34KA,SM34KA,Feist_11661_P36,G5,iTru7_108_04,GAAGAGGT,iTru5_08_B,ACCTCTTC,Feist_11661,SM34KA +1,MDL-249,MDL-249,Feist_11661_P37,A14,iTru7_204_09,AGGAACCT,iTru5_13_E,CTCCTGAA,Feist_11661,MDL-249 +1,SM67PII,SM67PII,Feist_11661_P36,K13,iTru7_111_02,TTCGTTGG,iTru5_06_E,TATGACCG,Feist_11661,SM67PII +1,MDL-182,MDL-182,Feist_11661_P36,E19,iTru7_112_11,TTCAGGAG,iTru5_03_G,GCATAACG,Feist_11661,MDL-182 +1,MDL-300,MDL-300,Feist_11661_P38,L3,iTru7_209_10,ACTGTGTC,iTru5_102_B,GGAGGAAT,Feist_11661,MDL-300 +1,MDL-241,MDL-241,Feist_11661_P37,A12,iTru7_204_01,CAGGAGAT,iTru5_17_D,AGTCAGGT,Feist_11661,MDL-241 +1,MDL-301,MDL-301,Feist_11661_P38,N3,iTru7_209_11,CCATACGT,iTru5_103_B,GTAAGGTG,Feist_11661,MDL-301 +1,MDL-173,MDL-173,Feist_11661_P36,C17,iTru7_112_02,CACACATG,iTru5_06_F,AGCCAACT,Feist_11661,MDL-173 +1,MDL-288,MDL-288,Feist_11661_P38,D1,iTru7_208_10,AACTGGTG,iTru5_102_A,AAGCCTGA,Feist_11661,MDL-288 +1,MDL-309,MDL-309,Feist_11661_P38,N5,iTru7_210_07,CTCCATGT,iTru5_111_B,GCACACAA,Feist_11661,MDL-309 +1,MDL-306,MDL-306,Feist_11661_P38,H5,iTru7_210_04,TGTAGCCA,iTru5_108_B,GATCTCAG,Feist_11661,MDL-306 +1,MDL-284,MDL-284,Feist_11661_P37,G22,iTru7_207_08,TGCTTGGT,iTru5_24_G,ATCCTTCC,Feist_11661,MDL-284 +1,SM57JS,SM57JS,Feist_11661_P36,G11,iTru7_110_04,CTGCACTT,iTru5_08_D,AGTTGTGC,Feist_11661,SM57JS +1,MDL-290,MDL-290,Feist_11661_P38,H1,iTru7_208_12,TGCGAACT,iTru5_104_A,ACAACGTG,Feist_11661,MDL-290 +1,P_putida_12633,P_putida_12633,Feist_11661_P37,M22,iTru7_207_11,TTGGTCTC,iTru5_15_H,CATGGATC,Feist_11661,P.putida_12633 +1,MDL-192,MDL-192,Feist_11661_P36,G21,iTru7_113_08,GAACGCTT,iTru5_12_G,AGACATGC,Feist_11661,MDL-192 +1,MDL-299,MDL-299,Feist_11661_P38,J3,iTru7_209_09,CTGGTTCT,iTru5_101_B,GGTTGGTA,Feist_11661,MDL-299 +1,MDL-331,MDL-331,Feist_11661_P38,J11,iTru7_302_05,TGCACCAA,iTru5_109_D,GATCCACT,Feist_11661,MDL-331 +1,MDL-125,MDL-125,Feist_11661_P39,L20,iTru7_105_02,TTCTCTCG,iTru5_118_G,CCTGTCAA,Feist_11661,MDL-125 +1,SM73PII,SM73PII,Feist_11661_P36,G15,iTru7_111_08,TCCGTATG,iTru5_12_E,CTCGTTCT,Feist_11661,SM73PII +1,MDL-170,MDL-170,Feist_11661_P36,M15,iTru7_111_11,CTTCGTTC,iTru5_03_F,CCTAGAGA,Feist_11661,MDL-170 +1,MDL-257,MDL-257,Feist_11661_P37,A16,iTru7_205_05,AAGGCGTT,iTru5_21_E,TATGGCAC,Feist_11661,MDL-257 +1,MDL-266,MDL-266,Feist_11661_P37,C18,iTru7_206_02,ATGGCGAA,iTru5_18_F,CTTACAGC,Feist_11661,MDL-266 +1,MDL-068,MDL-068,Feist_11661_P39,J6,iTru7_115_05,ACGGTCTT,iTru5_121_B,GAGACCAA,Feist_11661,MDL-068 +1,MDL-329,MDL-329,Feist_11661_P38,F11,iTru7_302_03,TGACGCAT,iTru5_107_D,TCGGATTC,Feist_11661,MDL-329 +1,MDL-338,MDL-338,Feist_11661_P38,H13,iTru7_302_12,TCTAACGC,iTru5_104_E,ACACTCTG,Feist_11661,MDL-338 +1,MDL-320,MDL-320,Feist_11661_P38,D9,iTru7_301_06,AGTTCGTC,iTru5_110_C,AGGCTGAA,Feist_11661,MDL-320 +1,MDL-283,MDL-283,Feist_11661_P37,E22,iTru7_207_07,TTAAGCGG,iTru5_23_G,ATTCCGCT,Feist_11661,MDL-283 +1,MDL-42,MDL-42,Feist_11661_P38,F23,iTru7_401_03,TCTCGCAA,iTru5_107_H,GAGAAGGT,Feist_11661,MDL-42 +1,MDL-339,MDL-339,Feist_11661_P38,J13,iTru7_303_01,ATAGCGGT,iTru5_105_E,ACGGTACA,Feist_11661,MDL-339 +1,MDL-191,MDL-191,Feist_11661_P36,E21,iTru7_113_07,AAGTGTCG,iTru5_11_G,AGACCTTG,Feist_11661,MDL-191 +2,MDL-233,MDL-233,Feist_11661_P37,A10,iTru7_203_05,TCGAACCA,iTru5_21_C,AAGCTGGT,Feist_11661,MDL-233 +2,MDL-083,MDL-083,Feist_11661_P39,H10,iTru7_101_08,CCTATGGT,iTru5_124_C,GTCTCATC,Feist_11661,MDL-083 +2,MDL-236,MDL-236,Feist_11661_P37,G10,iTru7_203_08,GACAAGAG,iTru5_24_C,CTCGACTT,Feist_11661,MDL-236 +2,MDL-303,MDL-303,Feist_11661_P38,B5,iTru7_210_01,CAGTCCAA,iTru5_105_B,GGATGTAG,Feist_11661,MDL-303 +2,MDL-232,MDL-232,Feist_11661_P37,O8,iTru7_203_04,CGTTGAGT,iTru5_20_C,GACCGATA,Feist_11661,MDL-232 +2,MDL-223,MDL-223,Feist_11661_P37,M6,iTru7_202_07,GAGTCTCT,iTru5_23_B,ATCATGCG,Feist_11661,MDL-223 +2,MDL-270,MDL-270,Feist_11661_P37,K18,iTru7_206_06,AACGACGT,iTru5_22_F,TTGGTGCA,Feist_11661,MDL-270 +2,MDL-067,MDL-067,Feist_11661_P39,H6,iTru7_115_04,CTGACACA,iTru5_120_B,TAACGTCG,Feist_11661,MDL-067 +2,MDL-205,MDL-205,Feist_11661_P37,I2,iTru7_201_01,CTTGGATG,iTru5_17_A,CCAGTATC,Feist_11661,MDL-205 +2,MDL-226,MDL-226,Feist_11661_P37,C8,iTru7_202_10,GGACTGTT,iTru5_14_C,AACAAGGC,Feist_11661,MDL-226 +2,MDL-295,MDL-295,Feist_11661_P38,B3,iTru7_209_05,TACCACAG,iTru5_109_A,AGCGAGAT,Feist_11661,MDL-295 +2,MDL-097,MDL-097,Feist_11661_P39,D14,iTru7_102_10,GTTAAGGC,iTru5_114_E,ATGGCGAT,Feist_11661,MDL-097 +2,MDL-092,MDL-092,Feist_11661_P39,J12,iTru7_102_05,TCACGTTC,iTru5_121_D,TAGCAGGA,Feist_11661,MDL-092 +2,MDL-098,MDL-098,Feist_11661_P39,F14,iTru7_102_11,AAGCCACA,iTru5_115_E,CAAGAAGC,Feist_11661,MDL-098 +2,MDL-267,MDL-267,Feist_11661_P37,E18,iTru7_206_03,GGTAGTGT,iTru5_19_F,TGGCTCTT,Feist_11661,MDL-267 +2,MDL-212,MDL-212,Feist_11661_P37,G4,iTru7_201_08,TACACGCT,iTru5_24_A,CGAGAGAA,Feist_11661,MDL-212 +2,MDL-082,MDL-082,Feist_11661_P39,F10,iTru7_101_07,ACTCGTTG,iTru5_123_C,CTTCCTTC,Feist_11661,MDL-082 +2,MDL-137,MDL-137,Feist_11661_P39,N22,iTru7_105_11,CATGGAAC,iTru5_115_H,TTGCTTGG,Feist_11661,MDL-137 +2,SM71PII,SM71PII,Feist_11661_P36,C15,iTru7_111_06,CATGAGGA,iTru5_10_E,AACCAGAG,Feist_11661,SM71PII +2,SM35KA,SM35KA,Feist_11661_P36,I5,iTru7_108_05,TCTGAGAG,iTru5_09_B,ACGGACTT,Feist_11661,SM35KA +2,MDL-244,MDL-244,Feist_11661_P37,G12,iTru7_204_04,GGCAAGTT,iTru5_20_D,CGGCATTA,Feist_11661,MDL-244 +2,MDL-194,MDL-194,Feist_11661_P36,K21,iTru7_113_10,TCAACTGG,iTru5_02_H,TTCGAAGC,Feist_11661,MDL-194 +2,MDL-238,MDL-238,Feist_11661_P37,K10,iTru7_203_10,GCTTAGCT,iTru5_14_D,ACAGTTCG,Feist_11661,MDL-238 +2,MDL-059,MDL-059,Feist_11661_P39,J4,iTru7_402_09,ACTGAGGT,iTru5_113_B,TCTGTCGT,Feist_11661,MDL-059 +2,MDL-237,MDL-237,Feist_11661_P37,I10,iTru7_203_09,GAACACAC,iTru5_13_D,ATCCACGA,Feist_11661,MDL-237 +2,MDL-262,MDL-262,Feist_11661_P37,K16,iTru7_205_10,CACCTGTT,iTru5_14_F,CCAACACT,Feist_11661,MDL-262 +2,MDL-046,MDL-046,Feist_11661_P39,F2,iTru7_401_11,CCTGTCAT,iTru5_115_A,CAACACAG,Feist_11661,MDL-046 +2,SM30KA,SM30KA,Feist_11661_P36,O3,iTru7_107_12,AAGGCTGA,iTru5_04_B,CGTCAAGA,Feist_11661,SM30KA +2,MDL-322,MDL-322,Feist_11661_P38,H9,iTru7_301_08,CGACCATT,iTru5_112_C,AGTGACCT,Feist_11661,MDL-322 +2,MDL-317,MDL-317,Feist_11661_P38,N7,iTru7_301_03,AGTCGACA,iTru5_107_C,AGAAGCCT,Feist_11661,MDL-317 +2,MDL-216,MDL-216,Feist_11661_P37,O4,iTru7_201_12,GTTGTAGC,iTru5_16_B,CCTATTGG,Feist_11661,MDL-216 +2,MDL-225,MDL-225,Feist_11661_P37,A8,iTru7_202_09,CAGTCTTC,iTru5_13_C,CGCAATGT,Feist_11661,MDL-225 +2,MDL-251,MDL-251,Feist_11661_P37,E14,iTru7_204_11,CCGTAAGA,iTru5_15_E,TGATAGGC,Feist_11661,MDL-251 +2,MDL-308,MDL-308,Feist_11661_P38,L5,iTru7_210_06,CTAGGTGA,iTru5_110_B,TACTAGCG,Feist_11661,MDL-308 +2,MDL-078,MDL-078,Feist_11661_P39,N8,iTru7_101_03,TGAGGTGT,iTru5_119_C,CGAACAAC,Feist_11661,MDL-078 +2,SM42LS,SM42LS,Feist_11661_P36,I7,iTru7_109_01,CTCGTCTT,iTru5_05_C,GCCAATAC,Feist_11661,SM42LS +2,MDL-208,MDL-208,Feist_11661_P37,O2,iTru7_201_04,TTGACAGG,iTru5_20_A,TGATCACG,Feist_11661,MDL-208 +2,SM68PII,SM68PII,Feist_11661_P36,M13,iTru7_111_03,TGGAGAGT,iTru5_07_E,AGCTAGTG,Feist_11661,SM68PII +2,MDL-326,MDL-326,Feist_11661_P38,P9,iTru7_301_12,ATACTCCG,iTru5_104_D,TGGTTCGA,Feist_11661,MDL-326 +2,MDL-279,MDL-279,Feist_11661_P37,M20,iTru7_207_03,TGCTTCCA,iTru5_19_G,CTCTATCG,Feist_11661,MDL-279 +2,MDL-186,MDL-186,Feist_11661_P37,I12,iTru7_204_05,ACCATGTG,iTru5_21_D,ACTCGATC,Feist_11661,MDL-186 +2,SM59PII,SM59PII,Feist_11661_P36,K11,iTru7_110_06,CACCACTA,iTru5_10_D,AAGGCTCT,Feist_11661,SM59PII +2,MDL-315,MDL-315,Feist_11661_P38,J7,iTru7_301_01,GTGGTGTT,iTru5_105_C,ACGAATCC,Feist_11661,MDL-315 +2,MDL-252,MDL-252,Feist_11661_P37,G14,iTru7_204_12,ATCGGTGT,iTru5_16_E,ATGCGTCA,Feist_11661,MDL-252 +2,MDL-30,MDL-30,Feist_11661_P38,F21,iTru7_305_07,GAGATACG,iTru5_111_G,AGTATGCC,Feist_11661,MDL-30 +2,MDL-263,MDL-263,Feist_11661_P37,M16,iTru7_205_11,ATCCGGTA,iTru5_15_F,CTTCACTG,Feist_11661,MDL-263 +2,MDL-323,MDL-323,Feist_11661_P38,J9,iTru7_301_09,CTGAAGCT,iTru5_101_D,GGTTAGCT,Feist_11661,MDL-323 +2,MDL-247,MDL-247,Feist_11661_P37,M12,iTru7_204_07,CAATCGAC,iTru5_23_D,CAGTCACA,Feist_11661,MDL-247 +2,MDL-258,MDL-258,Feist_11661_P37,C16,iTru7_205_06,GCCATAAC,iTru5_22_E,ACCATAGG,Feist_11661,MDL-258 +2,SM41LS,SM41LS,Feist_11661_P36,G7,iTru7_108_12,TGTTCGAG,iTru5_04_C,CCATGAAC,Feist_11661,SM41LS +2,SM46LS,SM46LS,Feist_11661_P36,A9,iTru7_109_05,AAGTCGAG,iTru5_09_C,GTTGCTGT,Feist_11661,SM46LS +2,MDL-319,MDL-319,Feist_11661_P38,B9,iTru7_301_05,GACATTCC,iTru5_109_C,AGCGTGTA,Feist_11661,MDL-319 +2,MDL-228,MDL-228,Feist_11661_P37,G8,iTru7_202_12,ATTGCGTG,iTru5_16_C,AATCCAGC,Feist_11661,MDL-228 +2,MDL-169,MDL-169,Feist_11661_P36,K15,iTru7_111_10,AGAACGAG,iTru5_02_F,AACACGCT,Feist_11661,MDL-169 +2,MDL-123,MDL-123,Feist_11661_P39,H20,iTru7_104_12,GAACATCG,iTru5_116_G,CAGACGTT,Feist_11661,MDL-123 +2,MDL-119,MDL-119,Feist_11661_P39,P18,iTru7_104_08,GCAAGATC,iTru5_124_F,ACGCAGTA,Feist_11661,MDL-119 +2,SM38LS-1,SM38LS-1,Feist_11661_P36,O5,iTru7_108_08,CAGGTATC,iTru5_12_B,ATCTGACC,Feist_11661,SM38LS-1 +2,MDL-296,MDL-296,Feist_11661_P38,D3,iTru7_209_06,ATTCGAGG,iTru5_110_A,AGGATAGC,Feist_11661,MDL-296 +2,MDL-287,MDL-287,Feist_11661_P38,B1,iTru7_208_09,TTGGTGAG,iTru5_101_A,AACAACCG,Feist_11661,MDL-287 +2,SM54JS,SM54JS,Feist_11661_P36,A11,iTru7_110_01,ATGACCAG,iTru5_05_D,CTGTATGC,Feist_11661,SM54JS +2,MDL-088,MDL-088,Feist_11661_P39,B12,iTru7_102_01,ATAAGGCG,iTru5_117_D,GTATCGAG,Feist_11661,MDL-088 +2,MDL-304,MDL-304,Feist_11661_P38,D5,iTru7_210_02,TCGTAGTC,iTru5_106_B,GTCCTGTT,Feist_11661,MDL-304 +2,P_putida_17390,P_putida_17390,Feist_11661_P37,A24,iTru7_208_01,ATGACGTC,iTru5_17_H,AATTCCGG,Feist_11661,P.putida_17390 +2,P_putida_17502,P_putida_17502,Feist_11661_P37,C24,iTru7_208_02,AACCTTGG,iTru5_18_H,GGCGAATA,Feist_11661,P.putida_17502 +2,P_putida_23484,P_putida_23484,Feist_11661_P37,E24,iTru7_208_03,GTCTTGCA,iTru5_19_H,AGGAGGTT,Feist_11661,P.putida_23484 +2,P_putida_39004,P_putida_39004,Feist_11661_P37,G24,iTru7_208_04,CAAGTGCA,iTru5_20_H,ACTCTGAG,Feist_11661,P.putida_39004 +2,SM44LS,SM44LS,Feist_11661_P36,M7,iTru7_109_03,CATTCGGT,iTru5_07_C,AACCGAAC,Feist_11661,SM44LS +2,MDL-222,MDL-222,Feist_11661_P37,K6,iTru7_202_06,ACTCTCGA,iTru5_22_B,GAACGTGA,Feist_11661,MDL-222 +2,MDL-269,MDL-269,Feist_11661_P37,I18,iTru7_206_05,AACGTGGA,iTru5_21_F,GGACATCA,Feist_11661,MDL-269 +2,MDL-135,MDL-135,Feist_11661_P39,J22,iTru7_105_09,AGCGGAAT,iTru5_113_H,GAGAGTAC,Feist_11661,MDL-135 +2,MDL-275,MDL-275,Feist_11661_P37,E20,iTru7_206_11,GTCACTGT,iTru5_15_G,GCCTATGT,Feist_11661,MDL-275 +2,MDL-293,MDL-293,Feist_11661_P38,N1,iTru7_209_03,CCTGATTG,iTru5_107_A,ACTGGTGT,Feist_11661,MDL-293 +2,SM33KA,SM33KA,Feist_11661_P36,E5,iTru7_108_03,GAAGGTTC,iTru5_07_B,GATACCTG,Feist_11661,SM33KA +2,MDL-242,MDL-242,Feist_11661_P37,C12,iTru7_204_02,GTAGCATC,iTru5_18_D,CATCAACC,Feist_11661,MDL-242 +2,MDL-080,MDL-080,Feist_11661_P39,B10,iTru7_101_05,GCCTATCA,iTru5_121_C,CTATGCCT,Feist_11661,MDL-080 +2,MDL-070,MDL-070,Feist_11661_P39,N6,iTru7_115_07,CACTAGCT,iTru5_123_B,GCAACCAT,Feist_11661,MDL-070 +2,MDL-095,MDL-095,Feist_11661_P39,P12,iTru7_102_08,AAGAGCCA,iTru5_124_D,AAGAGGCA,Feist_11661,MDL-095 +2,MDL-256,MDL-256,Feist_11661_P37,O14,iTru7_205_04,GGACAATC,iTru5_20_E,GTGATCCA,Feist_11661,MDL-256 +2,MDL-277,MDL-277,Feist_11661_P37,I20,iTru7_207_01,CACGTTGT,iTru5_17_G,CGGATCAA,Feist_11661,MDL-277 +2,MDL-239,MDL-239,Feist_11661_P37,M10,iTru7_203_11,GAAGGAAG,iTru5_15_D,ACAAGACG,Feist_11661,MDL-239 +2,MDL-268,MDL-268,Feist_11661_P37,G18,iTru7_206_04,TCGCTGTT,iTru5_20_F,AAGACCGT,Feist_11661,MDL-268 +2,MDL-292,MDL-292,Feist_11661_P38,L1,iTru7_209_02,ACACCAGT,iTru5_106_A,ACGTCCAA,Feist_11661,MDL-292 +2,SM62PII,SM62PII,Feist_11661_P36,A13,iTru7_110_09,GGCGTTAT,iTru5_01_E,GACTTGTG,Feist_11661,SM62PII +2,MDL-206,MDL-206,Feist_11661_P37,K2,iTru7_201_02,CAGTTGGA,iTru5_18_A,ACGCTTCT,Feist_11661,MDL-206 +2,MDL-094,MDL-094,Feist_11661_P39,N12,iTru7_102_07,TAGTTGCG,iTru5_123_D,GACGTCAT,Feist_11661,MDL-094 +2,MDL-305,MDL-305,Feist_11661_P38,F3,iTru7_209_07,GCACGTAA,iTru5_111_A,AGGTGTTG,Feist_11661,MDL-305 +2,MDL-230,MDL-230,Feist_11661_P37,K8,iTru7_203_02,CTTGCTGT,iTru5_18_C,ACCTTCGA,Feist_11661,MDL-230 +2,MDL-25,MDL-25,Feist_11661_P38,P19,iTru7_305_04,CGTACGAA,iTru5_108_G,AGCCTATC,Feist_11661,MDL-25 +2,MDL-215,MDL-215,Feist_11661_P37,M4,iTru7_201_11,TCGACATC,iTru5_15_B,AACCGTGT,Feist_11661,MDL-215 +2,SM66PII,SM66PII,Feist_11661_P36,I13,iTru7_111_01,CGATAGAG,iTru5_05_E,CTTAGGAC,Feist_11661,SM66PII +2,MDL-183,MDL-183,Feist_11661_P36,G19,iTru7_112_12,ACGATGAC,iTru5_04_G,TCGAACCT,Feist_11661,MDL-183 +2,SM56JS,SM56JS,Feist_11661_P36,E11,iTru7_110_03,TCCAATCG,iTru5_07_D,GCTGAATC,Feist_11661,SM56JS +2,MDL-278,MDL-278,Feist_11661_P37,K20,iTru7_207_02,TATTCCGG,iTru5_18_G,CCACATTG,Feist_11661,MDL-278 +2,SM17LS,SM17LS,Feist_11661_P36,E1,iTru7_106_11,GACTATGC,iTru5_03_A,AACACCAC,Feist_11661,SM17LS +2,MDL-219,MDL-219,Feist_11661_P37,E6,iTru7_202_03,TTGCAGAC,iTru5_19_B,ATGCCTAG,Feist_11661,MDL-219 +2,MDL-250,MDL-250,Feist_11661_P37,C14,iTru7_204_10,ACCTTCTC,iTru5_14_E,AATCGCTG,Feist_11661,MDL-250 +2,SM48LS,SM48LS,Feist_11661_P36,E9,iTru7_109_07,TATTCGCC,iTru5_11_C,GACGAACT,Feist_11661,SM48LS +2,SM72PII,SM72PII,Feist_11661_P36,E15,iTru7_111_07,CGGTTGTT,iTru5_11_E,CGCCTTAT,Feist_11661,SM72PII +2,MDL-104,MDL-104,Feist_11661_P39,B16,iTru7_103_05,GCATGTCT,iTru5_121_E,CTCAAGCT,Feist_11661,MDL-104 +2,MDL-203,MDL-203,Feist_11661_P37,E2,iTru7_114_11,ACATAGGC,iTru5_15_A,CGACCTAA,Feist_11661,MDL-203 +2,MDL-298,MDL-298,Feist_11661_P38,H3,iTru7_209_08,GTGTGACA,iTru5_112_A,AGTCTTGG,Feist_11661,MDL-298 +2,MDL-10,MDL-10,Feist_11661_P38,N17,iTru7_304_07,GGATTCGT,iTru5_111_F,TAAGTGGC,Feist_11661,MDL-10 +2,SM27KA,SM27KA,Feist_11661_P36,I3,iTru7_107_09,GCCTTGTT,iTru5_01_B,AGTGGCAA,Feist_11661,SM27KA +2,MDL-321,MDL-321,Feist_11661_P38,F9,iTru7_301_07,TAATGCCG,iTru5_111_C,AGGTTCCT,Feist_11661,MDL-321 +2,MDL-231,MDL-231,Feist_11661_P37,M8,iTru7_203_03,GTTGTTCG,iTru5_19_C,CATACGGA,Feist_11661,MDL-231 +2,MDL-344,MDL-344,Feist_11661_P38,D15,iTru7_303_06,GAGTGGTT,iTru5_110_E,AGGTAGGA,Feist_11661,MDL-344 +2,MDL-31,MDL-31,Feist_11661_P38,H21,iTru7_305_08,CGACGTTA,iTru5_112_G,AGTTCGCA,Feist_11661,MDL-31 +2,SM69PII,SM69PII,Feist_11661_P36,O13,iTru7_111_04,TCAGACGA,iTru5_08_E,GAACGAAG,Feist_11661,SM69PII +2,SM55JS,SM55JS,Feist_11661_P36,C11,iTru7_110_02,AACCGTTC,iTru5_06_D,TCGACAAG,Feist_11661,SM55JS +2,MDL-075,MDL-075,Feist_11661_P39,H8,iTru7_211_01,GCTTCTTG,iTru5_116_C,CACTTCAC,Feist_11661,MDL-075 +2,MDL-122,MDL-122,Feist_11661_P39,F20,iTru7_104_11,CTGGAGTA,iTru5_115_G,CAAGCCAA,Feist_11661,MDL-122 +2,SM60PII,SM60PII,Feist_11661_P36,M11,iTru7_110_07,ACAGCAAC,iTru5_11_D,CCTAACAG,Feist_11661,SM60PII +2,SM25LS,SM25LS,Feist_11661_P36,E3,iTru7_107_07,CCGACTAT,iTru5_11_A,CAATAGCC,Feist_11661,SM25LS +2,MDL-261,MDL-261,Feist_11661_P37,I16,iTru7_205_09,TGACTGAC,iTru5_13_F,TCGATGAC,Feist_11661,MDL-261 +2,MDL-229,MDL-229,Feist_11661_P37,I8,iTru7_203_01,GTAACGAC,iTru5_17_C,TTGCAACG,Feist_11661,MDL-229 +2,MDL-285,MDL-285,Feist_11661_P37,I22,iTru7_207_09,ACACACTC,iTru5_13_H,GCTTCACA,Feist_11661,MDL-285 +2,MDL-318,MDL-318,Feist_11661_P38,P7,iTru7_301_04,GTGAGCTT,iTru5_108_C,AGATTGCG,Feist_11661,MDL-318 +2,MDL-311,MDL-311,Feist_11661_P38,B7,iTru7_210_09,CGTATTCG,iTru5_101_C,AACAGCGA,Feist_11661,MDL-311 +2,MDL-243,MDL-243,Feist_11661_P37,E12,iTru7_204_03,TCGTTCGT,iTru5_19_D,GGTCACTA,Feist_11661,MDL-243 +2,MDL-286,MDL-286,Feist_11661_P37,K22,iTru7_207_10,CCACTTCT,iTru5_14_H,CTTCGGTT,Feist_11661,MDL-286 +2,SM51JS,SM51JS,Feist_11661_P36,K9,iTru7_109_10,TGGCACTA,iTru5_02_D,AGACGCTA,Feist_11661,SM51JS +2,MDL-14,MDL-14,Feist_11661_P38,D19,iTru7_304_10,CGTGTGTA,iTru5_102_G,AAGGAAGG,Feist_11661,MDL-14 +2,SM47LS,SM47LS,Feist_11661_P36,C9,iTru7_109_06,TATCGGTC,iTru5_10_C,TCTAGTCC,Feist_11661,SM47LS +2,SM40LS,SM40LS,Feist_11661_P36,E7,iTru7_108_11,CCAAGCAA,iTru5_03_C,CACAGGAA,Feist_11661,SM40LS +2,SM37LS,SM37LS,Feist_11661_P36,M5,iTru7_108_07,GAAGTACC,iTru5_11_B,TGCCTCAA,Feist_11661,SM37LS +2,MDL-294,MDL-294,Feist_11661_P38,P1,iTru7_209_04,TTGTGTGC,iTru5_108_A,AGATCGTC,Feist_11661,MDL-294 +2,MDL-224,MDL-224,Feist_11661_P37,O6,iTru7_202_08,CAACACCT,iTru5_24_B,CAACGAGT,Feist_11661,MDL-224 +2,MDL-185,MDL-185,Feist_11661_P36,K19,iTru7_113_02,GATACTGG,iTru5_06_G,GATCTTGC,Feist_11661,MDL-185 +2,MDL-302,MDL-302,Feist_11661_P38,P3,iTru7_209_12,GGTACTAC,iTru5_104_B,GGTGTACA,Feist_11661,MDL-302 +2,MDL-213,MDL-213,Feist_11661_P37,I4,iTru7_201_09,TACGGTTG,iTru5_13_B,CATTGACG,Feist_11661,MDL-213 +2,MDL-187,MDL-187,Feist_11661_P36,M19,iTru7_113_03,CTACTTGG,iTru5_07_G,GTTAAGCG,Feist_11661,MDL-187 +2,MDL-4,MDL-4,Feist_11661_P38,F17,iTru7_304_03,ATCGATCG,iTru5_107_F,TCTACGCA,Feist_11661,MDL-4 +2,MDL-349,MDL-349,Feist_11661_P38,N15,iTru7_303_11,CTAACTCG,iTru5_103_F,GGCATTCT,Feist_11661,MDL-349 +2,SM29KA,SM29KA,Feist_11661_P36,M3,iTru7_107_11,CAATGTGG,iTru5_03_B,TGAGCTGT,Feist_11661,SM29KA +2,SM43LS,SM43LS,Feist_11661_P36,K7,iTru7_109_02,CGAACTGT,iTru5_06_C,AGCTACCA,Feist_11661,SM43LS +2,MDL-310,MDL-310,Feist_11661_P38,P5,iTru7_210_08,CTTACAGC,iTru5_112_B,GAATCACC,Feist_11661,MDL-310 +2,MDL-214,MDL-214,Feist_11661_P37,K4,iTru7_201_10,GGATACCA,iTru5_14_B,GGTGATGA,Feist_11661,MDL-214 +2,SM26KA,SM26KA,Feist_11661_P36,G3,iTru7_107_08,AGCTAACC,iTru5_12_A,CATTCGTC,Feist_11661,SM26KA +2,P_putida_13795,P_putida_13795,Feist_11661_P37,O22,iTru7_207_12,CTCATCAG,iTru5_16_H,GTCAACAG,Feist_11661,P.putida_13795 +2,SM53JS,SM53JS,Feist_11661_P36,O9,iTru7_109_12,AACCTCCT,iTru5_04_D,GGTACTTC,Feist_11661,SM53JS +2,MDL-227,MDL-227,Feist_11661_P37,E8,iTru7_202_11,CTTAGTGG,iTru5_15_C,ACCATGTC,Feist_11661,MDL-227 +2,SM63PII,SM63PII,Feist_11661_P36,C13,iTru7_110_10,CTGTTGAC,iTru5_02_E,CAACTCCA,Feist_11661,SM63PII +2,MDL-276,MDL-276,Feist_11661_P37,G20,iTru7_206_12,ATGCCAAC,iTru5_16_G,CCGTAACT,Feist_11661,MDL-276 +2,MDL-314,MDL-314,Feist_11661_P38,H7,iTru7_210_12,TACATCGG,iTru5_104_C,ACACCGAT,Feist_11661,MDL-314 +2,SM58JS,SM58JS,Feist_11661_P36,I11,iTru7_110_05,CGCTTAAC,iTru5_09_D,TGTCGACT,Feist_11661,SM58JS +2,MDL-291,MDL-291,Feist_11661_P38,J1,iTru7_209_01,GACTTAGG,iTru5_105_A,ACGAACGA,Feist_11661,MDL-291 +2,SM49LS,SM49LS,Feist_11661_P36,G9,iTru7_109_08,GTATTGGC,iTru5_12_C,TTCGTACG,Feist_11661,SM49LS +2,MDL-324,MDL-324,Feist_11661_P38,L9,iTru7_301_10,TTGAGGCA,iTru5_102_D,GTAGCGTA,Feist_11661,MDL-324 +2,MDL-134,MDL-134,Feist_11661_P39,H22,iTru7_105_08,AGAAGCGT,iTru5_124_G,GTTCTTCG,Feist_11661,MDL-134 +2,SM65PII,SM65PII,Feist_11661_P36,G13,iTru7_110_12,TGACTTCG,iTru5_04_E,ACCGCTAT,Feist_11661,SM65PII +2,MDL-313,MDL-313,Feist_11661_P38,F7,iTru7_210_11,TACCAGGA,iTru5_103_C,AAGGCGTA,Feist_11661,MDL-313 +2,MDL-193,MDL-193,Feist_11661_P36,I21,iTru7_113_09,TCAAGGAC,iTru5_01_H,TAGCTGAG,Feist_11661,MDL-193 +2,SM64PII,SM64PII,Feist_11661_P36,E13,iTru7_110_11,GTCATCGA,iTru5_03_E,TGTTCCGT,Feist_11661,SM64PII +2,SM50JS,SM50JS,Feist_11661_P36,I9,iTru7_109_09,AGTCGCTT,iTru5_01_D,CGACACTT,Feist_11661,SM50JS +2,MDL-348,MDL-348,Feist_11661_P38,L15,iTru7_303_10,ATTCCTCC,iTru5_102_F,GTCGATTG,Feist_11661,MDL-348 +2,SM74PII,SM74PII,Feist_11661_P36,I15,iTru7_111_09,TGTGGTAC,iTru5_01_F,GTGAGACT,Feist_11661,SM74PII +2,MDL-171,MDL-171,Feist_11661_P36,O15,iTru7_111_12,CCAATAGG,iTru5_04_F,TTCCAGGT,Feist_11661,MDL-171 +2,MDL-312,MDL-312,Feist_11661_P38,D7,iTru7_210_10,ATTCTGGC,iTru5_102_C,AAGCGACT,Feist_11661,MDL-312 +2,MDL-307,MDL-307,Feist_11661_P38,J5,iTru7_210_05,TGCAGGTA,iTru5_109_B,GAGCTCTA,Feist_11661,MDL-307 +2,MDL-297,MDL-297,Feist_11661_P38,F5,iTru7_210_03,TCGAGTGA,iTru5_107_B,GTACCACA,Feist_11661,MDL-297 +2,MDL-096,MDL-096,Feist_11661_P39,B14,iTru7_102_09,ACAGCTCA,iTru5_113_E,ATCGTCTC,Feist_11661,MDL-096 +2,MDL-316,MDL-316,Feist_11661_P38,L7,iTru7_301_02,CGCATGAT,iTru5_106_C,ACTACGGT,Feist_11661,MDL-316 +2,SM34KA,SM34KA,Feist_11661_P36,G5,iTru7_108_04,GAAGAGGT,iTru5_08_B,ACCTCTTC,Feist_11661,SM34KA +2,MDL-249,MDL-249,Feist_11661_P37,A14,iTru7_204_09,AGGAACCT,iTru5_13_E,CTCCTGAA,Feist_11661,MDL-249 +2,SM67PII,SM67PII,Feist_11661_P36,K13,iTru7_111_02,TTCGTTGG,iTru5_06_E,TATGACCG,Feist_11661,SM67PII +2,MDL-182,MDL-182,Feist_11661_P36,E19,iTru7_112_11,TTCAGGAG,iTru5_03_G,GCATAACG,Feist_11661,MDL-182 +2,MDL-300,MDL-300,Feist_11661_P38,L3,iTru7_209_10,ACTGTGTC,iTru5_102_B,GGAGGAAT,Feist_11661,MDL-300 +2,MDL-241,MDL-241,Feist_11661_P37,A12,iTru7_204_01,CAGGAGAT,iTru5_17_D,AGTCAGGT,Feist_11661,MDL-241 +2,MDL-301,MDL-301,Feist_11661_P38,N3,iTru7_209_11,CCATACGT,iTru5_103_B,GTAAGGTG,Feist_11661,MDL-301 +2,MDL-173,MDL-173,Feist_11661_P36,C17,iTru7_112_02,CACACATG,iTru5_06_F,AGCCAACT,Feist_11661,MDL-173 +2,MDL-288,MDL-288,Feist_11661_P38,D1,iTru7_208_10,AACTGGTG,iTru5_102_A,AAGCCTGA,Feist_11661,MDL-288 +2,MDL-309,MDL-309,Feist_11661_P38,N5,iTru7_210_07,CTCCATGT,iTru5_111_B,GCACACAA,Feist_11661,MDL-309 +2,MDL-306,MDL-306,Feist_11661_P38,H5,iTru7_210_04,TGTAGCCA,iTru5_108_B,GATCTCAG,Feist_11661,MDL-306 +2,MDL-284,MDL-284,Feist_11661_P37,G22,iTru7_207_08,TGCTTGGT,iTru5_24_G,ATCCTTCC,Feist_11661,MDL-284 +2,SM57JS,SM57JS,Feist_11661_P36,G11,iTru7_110_04,CTGCACTT,iTru5_08_D,AGTTGTGC,Feist_11661,SM57JS +2,MDL-290,MDL-290,Feist_11661_P38,H1,iTru7_208_12,TGCGAACT,iTru5_104_A,ACAACGTG,Feist_11661,MDL-290 +2,P_putida_12633,P_putida_12633,Feist_11661_P37,M22,iTru7_207_11,TTGGTCTC,iTru5_15_H,CATGGATC,Feist_11661,P.putida_12633 +2,MDL-192,MDL-192,Feist_11661_P36,G21,iTru7_113_08,GAACGCTT,iTru5_12_G,AGACATGC,Feist_11661,MDL-192 +2,MDL-299,MDL-299,Feist_11661_P38,J3,iTru7_209_09,CTGGTTCT,iTru5_101_B,GGTTGGTA,Feist_11661,MDL-299 +2,MDL-331,MDL-331,Feist_11661_P38,J11,iTru7_302_05,TGCACCAA,iTru5_109_D,GATCCACT,Feist_11661,MDL-331 +2,MDL-125,MDL-125,Feist_11661_P39,L20,iTru7_105_02,TTCTCTCG,iTru5_118_G,CCTGTCAA,Feist_11661,MDL-125 +2,SM73PII,SM73PII,Feist_11661_P36,G15,iTru7_111_08,TCCGTATG,iTru5_12_E,CTCGTTCT,Feist_11661,SM73PII +2,MDL-170,MDL-170,Feist_11661_P36,M15,iTru7_111_11,CTTCGTTC,iTru5_03_F,CCTAGAGA,Feist_11661,MDL-170 +2,MDL-257,MDL-257,Feist_11661_P37,A16,iTru7_205_05,AAGGCGTT,iTru5_21_E,TATGGCAC,Feist_11661,MDL-257 +2,MDL-266,MDL-266,Feist_11661_P37,C18,iTru7_206_02,ATGGCGAA,iTru5_18_F,CTTACAGC,Feist_11661,MDL-266 +2,MDL-068,MDL-068,Feist_11661_P39,J6,iTru7_115_05,ACGGTCTT,iTru5_121_B,GAGACCAA,Feist_11661,MDL-068 +2,MDL-329,MDL-329,Feist_11661_P38,F11,iTru7_302_03,TGACGCAT,iTru5_107_D,TCGGATTC,Feist_11661,MDL-329 +2,MDL-338,MDL-338,Feist_11661_P38,H13,iTru7_302_12,TCTAACGC,iTru5_104_E,ACACTCTG,Feist_11661,MDL-338 +2,MDL-320,MDL-320,Feist_11661_P38,D9,iTru7_301_06,AGTTCGTC,iTru5_110_C,AGGCTGAA,Feist_11661,MDL-320 +2,MDL-283,MDL-283,Feist_11661_P37,E22,iTru7_207_07,TTAAGCGG,iTru5_23_G,ATTCCGCT,Feist_11661,MDL-283 +2,MDL-42,MDL-42,Feist_11661_P38,F23,iTru7_401_03,TCTCGCAA,iTru5_107_H,GAGAAGGT,Feist_11661,MDL-42 +2,MDL-339,MDL-339,Feist_11661_P38,J13,iTru7_303_01,ATAGCGGT,iTru5_105_E,ACGGTACA,Feist_11661,MDL-339 +2,MDL-191,MDL-191,Feist_11661_P36,E21,iTru7_113_07,AAGTGTCG,iTru5_11_G,AGACCTTG,Feist_11661,MDL-191 diff --git a/tests/data/sample_run_directories/190809_D00611_0709_AH3CKJBCX3_RKL0040_Feist_36-39_2/RTAComplete.txt b/tests/data/sample_run_directories/190809_D00611_0709_AH3CKJBCX3_RKL0040_Feist_36-39_2/RTAComplete.txt new file mode 100755 index 00000000..e21b2f5e --- /dev/null +++ b/tests/data/sample_run_directories/190809_D00611_0709_AH3CKJBCX3_RKL0040_Feist_36-39_2/RTAComplete.txt @@ -0,0 +1 @@ +8/11/2019,04:28:28.532,Illumina RTA 1.18.66.3 diff --git a/tests/data/sample_run_directories/190809_D00611_0709_AH3CKJBCX3_RKL0040_Feist_36-39_2/RunInfo.xml b/tests/data/sample_run_directories/190809_D00611_0709_AH3CKJBCX3_RKL0040_Feist_36-39_2/RunInfo.xml new file mode 100755 index 00000000..a64472ba --- /dev/null +++ b/tests/data/sample_run_directories/190809_D00611_0709_AH3CKJBCX3_RKL0040_Feist_36-39_2/RunInfo.xml @@ -0,0 +1,19 @@ + + + + H3CKJBCX3 + D00611 + 190809 + + + + + + + + + 1 + 2 + + + \ No newline at end of file diff --git a/tests/data/sample_run_directories/190809_D00611_0709_AH3CKJBCX3_RKL0040_Feist_36-39_2/runParameters.xml b/tests/data/sample_run_directories/190809_D00611_0709_AH3CKJBCX3_RKL0040_Feist_36-39_2/runParameters.xml new file mode 100755 index 00000000..556a4914 --- /dev/null +++ b/tests/data/sample_run_directories/190809_D00611_0709_AH3CKJBCX3_RKL0040_Feist_36-39_2/runParameters.xml @@ -0,0 +1,141 @@ + + + + RKL0040_Feist_36-39_2 + -999 + A + DUALINDEX + true + 150 + 8 + 8 + 150 + Z:\Illumina_HiSeq + true + v8RRv2bins + Save All Thumbnails + HiSeq Rapid Flow Cell v2 + false + + false + HiSeq Rapid SBS Kit v2 + HiSeq Rapid PE Cluster Kit v2 + HiSeq Rapid PE Cluster Kit v2 + + 1 + 2 + + OnBoardClustering + RapidRunV2 + RapidRun + None + false + false + HiSeq Control Software + 2.2.68 + 190809_D00611_0709_AH3CKJBCX3_RKL0040_Feist_36-39_2 + 190809 + Standalone + + false + + false + 190333200 + D:\Illumina\BaseSpaceTemp + true + + D00611 + 709 + HISEQ + 7.9.7 + 3.0.0 + 1.18.66.3 + Illumina,Bruno Fluidics Controller,0,v2.0420 + 2.01-F20-R02 + 6.45.20.3690 + + H3CKJBCX3 + sbsuser + +
+
+ + DynamicITF + BothLaneSurfaces + DualSwathFC + true + true + true + true + true + false + HiSeq Adapter Plate + HiSeq Flow Cell Holder + 5 + 8 + + 3 + 7 + 0 + 500 + 500 + 250 + 350 + 10 + 200 + 100 + 50 + 0 + 65535 + 100 + 4 + + 2048 + 10000 + 2048 + 160000 + 1.40625E-07 + 60 + 16 + 2 + false + + + + + + + false + + + + x + false + 525 + false + false + true + + + + + x + + + + + + + + + false + 0 + true + D:\Illumina\HiSeqTemp\190809_D00611_0709_AH3CKJBCX3_RKL0040_Feist_36-39_2 + 1.5.21.0 + false + false + + + 1 + \ No newline at end of file diff --git a/tests/data/sample_run_directories/200320_K00180_0957_AHCYKKBBXY_PE150_Knight/200320_K00180_0957_AHCYKKBBXY_PE150_Knight.csv b/tests/data/sample_run_directories/200320_K00180_0957_AHCYKKBBXY_PE150_Knight/200320_K00180_0957_AHCYKKBBXY_PE150_Knight.csv new file mode 100644 index 00000000..387fd995 --- /dev/null +++ b/tests/data/sample_run_directories/200320_K00180_0957_AHCYKKBBXY_PE150_Knight/200320_K00180_0957_AHCYKKBBXY_PE150_Knight.csv @@ -0,0 +1,115 @@ +[Header],,,,,,,,,, +IEMFileVersion,4,,PI,Rob Knight,robknight@ucsd.edu,,,,, +Date,,,Contact,Greg Humphrey,,,,,, +Workflow,GenerateFASTQ,,,ghsmu414@gmail.com,,,,,, +Application,HiSeq FASTQ Only,,,,,,,,, +Assay,TruSeq LT,,,,,,,,, +Description,,,,,,,,,, +Chemistry,Default,,,,,,,,, +,,,,,,,,,, +[Reads],,,,,,,,,, +51,,,,,,,,,, +,,,,,,,,,, +,,,,,,,,,, +[Settings],,,,,,,,,, +Adapter,,,,,,,,,, +AdapterRead2,,,,,,,,,, +,,,,,,,,,, +[Data],,,,,,,,,, +Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,I5_Index_ID,index2,Sample_Project,Description +7,10530521_1,,,,,ATGTTAGGGAAT,,,, +7,10540521_1,,,,,GCTAGTTATGGA,,,, +7,10220551_1,,,,,TCATCCGTCGGC,,,, +7,10530111_1,,,,,ATTTGGCTCTTA,,,, +7,10530351_1,,,,,GATCCGGCAGGA,,,, +7,10540312_1,,,,,GTTAAGCTGACC,,,, +7,10540311_1,,,,,CCTATTGCGGCC,,,, +7,10540452_1,,,,,CAATAGAATAAG,,,, +7,10220411_1,,,,,ACATAGCGGTTC,,,, +7,BLANK13_10A_1,,,,,GCGTGGTCATTA,,,, +7,BLANK13_11A_1,,,,,GATTCTTTAGAT,,,, +7,BLANK13_12A_1,,,,,CGGATCTAGTGT,,,, +7,10530551_1,,,,,AAGTGGCTATCC,,,, +7,10540551_1,,,,,ACTAGTTGGACC,,,, +7,10221111_1,,,,,GGCTTCGGAGCG,,,, +7,10530112_1,,,,,CGCGTCAAACTA,,,, +7,10530352A_1,,,,,CTTCCAACTCAT,,,, +7,10540351_1,,,,,GCCTAGCCCAAT,,,, +7,10220252_1,,,,,GTTAGGGAGCGA,,,, +7,10540453_1,,,,,TATACCGCTGCG,,,, +7,10220412_1,,,,,CTTACACTGCTT,,,, +7,BLANK13_10B_1,,,,,CCTGCACCTGCA,,,, +7,BLANK13_11B_1,,,,,AGGACAAACTAT,,,, +7,BLANK13_12B_1,,,,,ATAACGGTGTAC,,,, +7,10530561_1,,,,,GTCGTTACCCGC,,,, +7,10540561_1,,,,,CGCAAGCCCGCG,,,, +7,10221151_1,,,,,CGGTCAATTGAC,,,, +7,10530211_1,,,,,ATGTTCCTCATC,,,, +7,10540111_1,,,,,CGACCTCGCATA,,,, +7,10540352_1,,,,,CATTCGTGGCGT,,,, +7,10220311_1,,,,,AGTACGCAGTCT,,,, +7,10220452_1,,,,,CAGTGCACGTCT,,,, +7,10530413_1,,,,,ACTCACAGGAAT,,,, +7,BLANK13_10C_1,,,,,TGGTGTTTATAT,,,, +7,BLANK13_11C_1,,,,,TCTTCCTAAAGT,,,, +7,BLANK13_12C_1,,,,,GCCCTTCCCGTG,,,, +7,10531111_1,,,,,AGTATATGTTTC,,,, +7,10541111_1,,,,,AGAGCGGAACAA,,,, +7,10221211_1,,,,,TCCGCTGCTGAC,,,, +7,10530212_1,,,,,TCCGTGGTATAG,,,, +7,10540112_1,,,,,GTCAGAGTATTG,,,, +7,10220111_1,,,,,GCGGTCGGTCAG,,,, +7,10220312_1,,,,,TATCCTGGTTTC,,,, +7,10220453_1,,,,,CTGGTGCTGAAT,,,, +7,10530451_1,,,,,GTTGAAGCACCT,,,, +7,BLANK13_10D_1,,,,,GTGCGGTTCACT,,,, +7,BLANK13_11D_1,,,,,CTTGTGCGACAA,,,, +7,BLANK13_12D_1,,,,,CACAGTTGAAGT,,,, +7,10531151_1,,,,,GGCTCGTCGGAG,,,, +7,10541151_1,,,,,ACATGGGCGGAA,,,, +7,10220561_1,,,,,TGCGCGCCTTCC,,,, +7,10530251_1,,,,,GTTGGTTGGCAT,,,, +7,10540211_1,,,,,GAACGATCATGT,,,, +7,10220112_1,,,,,TCAGTCAGATGA,,,, +7,10220352_1,,,,,CTGGTCTTACGG,,,, +7,10530411_1,,,,,ACAAAGGTATCA,,,, +7,10540413_1,,,,,GTAAACGACTTG,,,, +7,BLANK13_10E_1,,,,,TAGCGCGAACTT,,,, +7,BLANK13_11E_1,,,,,GCGCTTAGAATA,,,, +7,BLANK13_12E_1,,,,,GCAAAGGCCCGC,,,, +7,10531211_1,,,,,GACATCTGACAC,,,, +7,10541211_1,,,,,CTGCGGATATAC,,,, +7,BLANK13_3F_1,,,,,GCGCACACCTTC,,,, +7,10530352B_1,,,,,AACGGGCGACGT,,,, +7,10540212_1,,,,,CTCCACATTCCT,,,, +7,10220211_1,,,,,CGAACGTCTATG,,,, +7,10220351_1,,,,,ATGCCGGTAATA,,,, +7,10530412_1,,,,,TGAACCCTATGG,,,, +7,10540451_1,,,,,TTGGACGTCCAC,,,, +7,BLANK13_10F_1,,,,,ATGTAGGCTTAG,,,, +7,BLANK13_11F_1,,,,,AGAGGAGTCGAC,,,, +7,BLANK13_12F_1,,,,,CTCCCACTAGAG,,,, +7,10530511_1,,,,,AATTTCCTAACA,,,, +7,10220511_1,,,,,GTGAGGGCAAGT,,,, +7,BLANK13_3G_1,,,,,CACGAAAGCAGG,,,, +7,10530311_1,,,,,TACTGAGCCTCG,,,, +7,10540251_1,,,,,TCTTCGCAGCAG,,,, +7,10220212_1,,,,,CAGTCCCTGCAC,,,, +7,10530452_1,,,,,ATCAAGATACGC,,,, +7,10540411_1,,,,,AATAAGCAATAG,,,, +7,10220413_1,,,,,GCACGCGAGCAC,,,, +7,BLANK13_10G_1,,,,,GCATTACTGGAC,,,, +7,BLANK13_11G_1,,,,,GTCTCCTCCCTT,,,, +7,BLANK13_12G_1,,,,,AATAGATGCTGA,,,, +7,10540511_1,,,,,ATAAACGGACAT,,,, +7,10220521_1,,,,,ATATTGGCAGCC,,,, +7,BLANK13_3H_1,,,,,CGTGGCTTTCCG,,,, +7,10530312_1,,,,,GGTGCAGACAGA,,,, +7,10540252_1,,,,,CACGCTATTGGA,,,, +7,10220251_1,,,,,TGATTTAATTGC,,,, +7,10530453_1,,,,,CTGAGGCCCTTC,,,, +7,10540412_1,,,,,TATGGGTAGCTA,,,, +7,10220451_1,,,,,CTTAGGCATGTG,,,, +7,BLANK13_10H_1,,,,,TCCGGACTCCTG,,,, +7,BLANK13_11H_1,,,,,AGTATCATATAT,,,, +7,BLANK13_12H_1,,,,,AACGCTTCTTAT,,,, diff --git a/tests/data/sample_run_directories/200320_K00180_0957_AHCYKKBBXY_PE150_Knight/2020-03-17_Knight_Mayo_Fecal_Stability_2_RERUN3_SampleSheet.csv b/tests/data/sample_run_directories/200320_K00180_0957_AHCYKKBBXY_PE150_Knight/2020-03-17_Knight_Mayo_Fecal_Stability_2_RERUN3_SampleSheet.csv new file mode 100644 index 00000000..5b1d2d6a --- /dev/null +++ b/tests/data/sample_run_directories/200320_K00180_0957_AHCYKKBBXY_PE150_Knight/2020-03-17_Knight_Mayo_Fecal_Stability_2_RERUN3_SampleSheet.csv @@ -0,0 +1,31 @@ +# PI,Knight,robknight@ucsd.edu,,,,,,,, +# Contact,Gail Ackermann,Greg Humphrey,Jeff Dereus,,,,,,, +# ,ackermag@ucsd.edu,ghsmu414@gmail.com,jdereus@ucsd.edu,,,,,,, +[Header],,,,,,,,,, +IEMFileVersion,4,,,,,,,,, +Investigator Name,Knight,,,,,,,,, +Experiment Name,,,,,,,,,, +Date,3/17/20,,,,,,,,, +Workflow,GenerateFASTQ,,,,,,,,, +Application,FASTQ Only,,,,,,,,, +Assay,Amplicon,,,,,,,,, +Description,,,,,,,,,, +Chemistry,Default,,,,,,,,, +,,,,,,,,,, +[Reads],,,,,,,,,, +150,,,,,,,,,, +150,,,,,,,,,, +,,,,,,,,,, +[Settings],,,,,,,,,, +ReverseComplement,0,,,,,,,,, +,,,,,,,,,, +[Data],,,,,,,,,, +Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,I5_Index_ID,index2,Sample_Project,Description +1,MFSII_1_1-2_3,,,,,NNNNNNNNNNNN,,,, +2,MFSII_3_1-4_3,,,,,NNNNNNNNNNNN,,,, +3,MFSII_5_1-6_3,,,,,NNNNNNNNNNNN,,,, +4,MFSII_7_1-8_3,,,,,NNNNNNNNNNNN,,,, +5,MFSII_9_1-10_3,,,,,NNNNNNNNNNNN,,,, +6,MFSII_11_1-12_3,,,,,NNNNNNNNNNNN,,,, +7,MFSII_13_1-13_3,,,,,NNNNNNNNNNNN,,,, +8,MFSII_1_1-2_3,,,,,NNNNNNNNNNNN,,,, \ No newline at end of file diff --git a/tests/data/sample_run_directories/200320_K00180_0957_AHCYKKBBXY_PE150_Knight/RTAComplete.txt b/tests/data/sample_run_directories/200320_K00180_0957_AHCYKKBBXY_PE150_Knight/RTAComplete.txt new file mode 100755 index 00000000..460ed637 --- /dev/null +++ b/tests/data/sample_run_directories/200320_K00180_0957_AHCYKKBBXY_PE150_Knight/RTAComplete.txt @@ -0,0 +1 @@ +RTA 2.7.7 completed on 3/23/2020 9:17:40 AM diff --git a/tests/data/sample_run_directories/200320_K00180_0957_AHCYKKBBXY_PE150_Knight/RunInfo.xml b/tests/data/sample_run_directories/200320_K00180_0957_AHCYKKBBXY_PE150_Knight/RunInfo.xml new file mode 100755 index 00000000..dfce1dd9 --- /dev/null +++ b/tests/data/sample_run_directories/200320_K00180_0957_AHCYKKBBXY_PE150_Knight/RunInfo.xml @@ -0,0 +1,923 @@ + + + + HCYKKBBXY + K00180 + 200320 + + + + + + + + + 1_1101 + 1_1102 + 1_1103 + 1_1104 + 1_1105 + 1_1106 + 1_1107 + 1_1108 + 1_1109 + 1_1110 + 1_1111 + 1_1112 + 1_1113 + 1_1114 + 1_1115 + 1_1116 + 1_1117 + 1_1118 + 1_1119 + 1_1120 + 1_1121 + 1_1122 + 1_1123 + 1_1124 + 1_1125 + 1_1126 + 1_1127 + 1_1128 + 1_1201 + 1_1202 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a/tests/data/sample_run_directories/20220912_FS10001773_27_BSE39218-1017/RunInfo.xml b/tests/data/sample_run_directories/20220912_FS10001773_27_BSE39218-1017/RunInfo.xml new file mode 100755 index 00000000..dcc2194a --- /dev/null +++ b/tests/data/sample_run_directories/20220912_FS10001773_27_BSE39218-1017/RunInfo.xml @@ -0,0 +1,41 @@ + + + + BSE39218-1017 + FS10001773 + 220912 + + + + + + + + + + 1_1101 + 1_1102 + 1_1103 + 1_1104 + 1_1105 + 1_1106 + 1_1107 + 1_1108 + 1_1109 + 1_1110 + 1_1111 + 1_1112 + 1_1113 + 1_1114 + 1_1115 + 1_1116 + + + + + + 1 + 2 + + + \ No newline at end of file diff --git a/tests/data/sample_run_directories/20220912_FS10001773_27_BSE39218-1017/RunParameters.xml b/tests/data/sample_run_directories/20220912_FS10001773_27_BSE39218-1017/RunParameters.xml new file mode 100755 index 00000000..317a0a86 --- /dev/null +++ b/tests/data/sample_run_directories/20220912_FS10001773_27_BSE39218-1017/RunParameters.xml @@ -0,0 +1,72 @@ + + + FS10001773 + 20220912_FS10001773_27_BSE39218-1017 + 27 + iSeq Control Software + 2.0.0.661 + 2.0.0.1703 + 1.4.0 + 1.4.0 + 1.4.0 + 0x1300000a + PilotvA + 5 + 3 + 1 + 2.12.6.0 + 20220912_RNA_pilot_II_metaT_2_3_14606 + Protocol\2Read2Index.xml + C:\ProgramData\Illumina\iSeq Control Software\Recipe\v2 + 2Read2Index + P2BL_6.6.0 + X + 27027 + 2.4.0.2466 + 197314E2AACB8427 + PairedEnd + true + + 151 + 8 + 8 + 151 + + + 151 + 8 + 8 + 151 + + + 92.24359 + 90.33952 + 50.21934 + 57.13833 + 1.212311 G + + D:\Illumina\iSeq Runs\20220912_FS10001773_27_BSE39218-1017 + Y:\KL_iSeq_Runs\20220912_FS10001773_27_BSE39218-1017 + + + BSE39218-1017 + 20009555 + 20685883 + 2023-08-18T00:00:00 + + + FY2191571-FC7 + 20009584 + 20658953 + 2023-06-04T00:00:00 + + 2022-09-12T16:32:24-07:00 + 2022-09-13T11:30:21-07:00 + + use1-prod + + 243942699 + UserAndIlluminaHealth + Personal + + \ No newline at end of file diff --git a/tests/data/sample_run_directories/20220912_FS10001773_27_BSE39218-1017/SampleSheet.csv b/tests/data/sample_run_directories/20220912_FS10001773_27_BSE39218-1017/SampleSheet.csv new file mode 100755 index 00000000..35f1f38d Binary files /dev/null and b/tests/data/sample_run_directories/20220912_FS10001773_27_BSE39218-1017/SampleSheet.csv differ diff --git a/tests/data/sample_run_directories/231108_M04586_0992_000000000-L7342/RTAComplete.txt b/tests/data/sample_run_directories/231108_M04586_0992_000000000-L7342/RTAComplete.txt new file mode 100755 index 00000000..4ca175fe --- /dev/null +++ b/tests/data/sample_run_directories/231108_M04586_0992_000000000-L7342/RTAComplete.txt @@ -0,0 +1 @@ +11/9/2023,16:47:44.367,Illumina RTA 1.18.54.4 diff --git a/tests/data/sample_run_directories/231108_M04586_0992_000000000-L7342/RunInfo.xml b/tests/data/sample_run_directories/231108_M04586_0992_000000000-L7342/RunInfo.xml new file mode 100755 index 00000000..29e2658c --- /dev/null +++ b/tests/data/sample_run_directories/231108_M04586_0992_000000000-L7342/RunInfo.xml @@ -0,0 +1,14 @@ + + + + 000000000-L7342 + M04586 + 231108 + + + + + + + + \ No newline at end of file diff --git a/tests/data/sample_run_directories/231108_M04586_0992_000000000-L7342/SampleSheet.csv b/tests/data/sample_run_directories/231108_M04586_0992_000000000-L7342/SampleSheet.csv new file mode 100755 index 00000000..eda765e3 --- /dev/null +++ b/tests/data/sample_run_directories/231108_M04586_0992_000000000-L7342/SampleSheet.csv @@ -0,0 +1,23 @@ +[Header] +Local Run Manager Analysis Id,607607 +Experiment Name,Knight_Cedars +Date,11/8/2023 +Module,GenerateFASTQ - 2.0.1 +Workflow,GenerateFASTQ +Library Prep Kit,Custom +Chemistry,Amplicon +iemfileversion,5 +application,FASTQ Only +instrument type,MiSeq +index adapters, + +[Reads] +151 +151 + +[Settings] +reversecomplement,0 + +[Data] +Sample_ID,Description,index,I7_Index_ID,Sample_Project,Sample_Plate,Sample_Well +Cedars_Creeping_Fat_EVP,,NNNNNNNNNNNN,NNNNNNNNNNNN,,, diff --git a/tests/data/sample_run_directories/231108_M04586_0992_000000000-L7342/runParameters.xml b/tests/data/sample_run_directories/231108_M04586_0992_000000000-L7342/runParameters.xml new file mode 100755 index 00000000..ed6acb57 --- /dev/null +++ b/tests/data/sample_run_directories/231108_M04586_0992_000000000-L7342/runParameters.xml @@ -0,0 +1,91 @@ + + + MiSeq_1_1 + false + + 000000000-L7342 + 15028382 + 2024-06-15T00:00:00 + 20764717 + + + MS7903718-00PR2 + 15041807 + 2024-06-10T00:00:00 + 20764159 + + + MS3502391-300V2 + 15033572 + 2024-05-27T00:00:00 + 20772496 + + false + true + + Post-Run Wash + + true + 3.1.0.13 + 14 + 1 + 1 + MiSeq Control Software + + 231108_M04586_0992_000000000-L7342 + M04586 + 992 + 9.5.12 + 3.1.0.13 + 1.18.54.4 + 000000000-L7342 + MS7903718-00PR2 + 15033572 + Version2 + MS3502391-300V2 + + + Knight_Cedars + Amplicon + sbsuser + + Amplicon + + false + + + + + + D:\Illumina\MiSeqTemp\231108_M04586_0992_000000000-L7342 + 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b/tests/data/sample_run_directories/231215_LH00444_0031_B222WHFLT4/RunParameters.xml new file mode 100755 index 00000000..4b59010f --- /dev/null +++ b/tests/data/sample_run_directories/231215_LH00444_0031_B222WHFLT4/RunParameters.xml @@ -0,0 +1,79 @@ + + + B + NovaSeqXSeries Control Software + 1.2.0.28691 + //igm-storage.ucsd.edu/data1/Illumina_NovaSeq/231215_LH00444_0031_B222WHFLT4 + RunMonitoring + Manual + None + NovaSeqXPlus + LH00444 + 231215_LH00444_0031_B222WHFLT4 + 31 + 25B Sequencing + 25B-01.02.01 + PE150_25B_ComboB + NovaSeqXSeries B4 + NovaSeqXSeriesB4 + + + LC4048820-25B3 + 20788826 + 20066626 + 2024-09-12T00:00:00-07:00 + Reagent + 4 + 1.5 + 25B 300c + + + 222WHFLT4 + 20792309 + 20088039 + 2024-06-13T00:00:00-07:00 + FlowCell + 4 + 1.0 + 25B + + + LC2308030551-1 + 23080201 + 20089853 + 2025-02-02T00:00:00-08:00 + Buffer + 3 + 1.0 + Universal + + + LC1003010-LS1 + 1000018707 + 20101913 + 2025-08-03T00:00:00-07:00 + SampleTube + 3 + 1.0 + 8 Lane + + + LC2001371-LI6 + 18095590 + 20090671 + 2024-09-11T00:00:00-07:00 + Lyo + 11 + 1.5 + High + + + + + + + + + + false + \ No newline at end of file diff --git a/tests/data/seq_counts.sbatch b/tests/data/seq_counts.sbatch new file mode 100644 index 00000000..f39d3b67 --- /dev/null +++ b/tests/data/seq_counts.sbatch @@ -0,0 +1,25 @@ +#!/bin/bash -l +#SBATCH -J seq_counts +#SBATCH --time 1440 +#SBATCH --mem 8G +#SBATCH -N 1 +#SBATCH -c 4 +#SBATCH -p qiita +#SBATCH --array=1-8 + +#SBATCH --output tests/2caa8226-cf69-45a3-bd40-1e90ec3d18d0/SeqCountsJob/logs/%x_%A_%a.out +#SBATCH --error tests/2caa8226-cf69-45a3-bd40-1e90ec3d18d0/SeqCountsJob/logs/%x_%A_%a.err + +set -x +set -e +set -o pipefail +mkdir -p tests/2caa8226-cf69-45a3-bd40-1e90ec3d18d0/SeqCountsJob/logs + +files=($(cat tests/data/files_to_count.txt)) +my_file=${files[$((${SLURM_ARRAY_TASK_ID} - 1))]} + +echo "${my_file}" + +conda activate qp-knight-lab-processing-2022.03 + +seqtk size ${my_file} diff --git a/tests/data/seq_counts_logs/seq_count_2679966_1.err b/tests/data/seq_counts_logs/seq_count_2679966_1.err new file mode 100644 index 00000000..a1c9e65c --- /dev/null +++ b/tests/data/seq_counts_logs/seq_count_2679966_1.err @@ -0,0 +1,3 @@ +This is an example .err file produced by seq_counts.sbatch. +Additional details removed. ++ seqtk size REMOVED/working_dir/8edbdee2-da52-4278-af40-267185bbcd7e/TRIntegrateJob/integrated/Test_8_22_2014_R2_example_S2_L007_R1_001.fastq.gz diff --git a/tests/data/seq_counts_logs/seq_count_2679966_1.out b/tests/data/seq_counts_logs/seq_count_2679966_1.out new file mode 100644 index 00000000..94552607 --- /dev/null +++ b/tests/data/seq_counts_logs/seq_count_2679966_1.out @@ -0,0 +1,2 @@ +REMOVED/8edbdee2-da52-4278-af40-267185bbcd7e/TRIntegrateJob/integrated/Test_8_22_2014_R2_example_S2_L007_R1_001.fastq.gz +64464162 8345327641 diff --git a/tests/data/seq_counts_logs/seq_count_2679966_2.err b/tests/data/seq_counts_logs/seq_count_2679966_2.err new file mode 100644 index 00000000..5de27ab2 --- /dev/null +++ b/tests/data/seq_counts_logs/seq_count_2679966_2.err @@ -0,0 +1,3 @@ +This is an example .err file produced by seq_counts.sbatch. +Additional details removed. ++ seqtk size REMOVED/working_dir/8edbdee2-da52-4278-af40-267185bbcd7e/TRIntegrateJob/integrated/Test_8_22_2014_R1_example_S3_L007_R1_001.fastq.gz diff --git a/tests/data/seq_counts_logs/seq_count_2679966_2.out b/tests/data/seq_counts_logs/seq_count_2679966_2.out new file mode 100644 index 00000000..7e3bf3a4 --- /dev/null +++ b/tests/data/seq_counts_logs/seq_count_2679966_2.out @@ -0,0 +1,2 @@ +REMOVED/8edbdee2-da52-4278-af40-267185bbcd7e/TRIntegrateJob/integrated/Test_8_22_2014_R1_example_S3_L007_R1_001.fastq.gz +70399028 9293296513 diff --git a/tests/data/seq_counts_logs/seq_count_2679966_4.err b/tests/data/seq_counts_logs/seq_count_2679966_4.err new file mode 100644 index 00000000..dce819a0 --- /dev/null +++ b/tests/data/seq_counts_logs/seq_count_2679966_4.err @@ -0,0 +1,3 @@ +This is an example .err file produced by seq_counts.sbatch. +Additional details removed. ++ seqtk size REMOVED/working_dir/8edbdee2-da52-4278-af40-267185bbcd7e/TRIntegrateJob/integrated/Test_8_22_2014_R1_example_S3_L007_R2_001.fastq.gz diff --git a/tests/data/seq_counts_logs/seq_count_2679966_4.out b/tests/data/seq_counts_logs/seq_count_2679966_4.out new file mode 100644 index 00000000..1973f6f5 --- /dev/null +++ b/tests/data/seq_counts_logs/seq_count_2679966_4.out @@ -0,0 +1,2 @@ +REMOVED/8edbdee2-da52-4278-af40-267185bbcd7e/TRIntegrateJob/integrated/Test_8_22_2014_R1_example_S3_L007_R2_001.fastq.gz +70399028 9317943166 diff --git a/tests/data/seq_counts_logs/seq_count_2679966_5.err b/tests/data/seq_counts_logs/seq_count_2679966_5.err new file mode 100644 index 00000000..2bf591a4 --- /dev/null +++ b/tests/data/seq_counts_logs/seq_count_2679966_5.err @@ -0,0 +1,3 @@ +This is an example .err file produced by seq_counts.sbatch. +Additional details removed. ++ seqtk size REMOVED/working_dir/8edbdee2-da52-4278-af40-267185bbcd7e/TRIntegrateJob/integrated/Test_8_22_2014_R2_example_S2_L007_I1_001.fastq.gz diff --git a/tests/data/seq_counts_logs/seq_count_2679966_5.out b/tests/data/seq_counts_logs/seq_count_2679966_5.out new file mode 100644 index 00000000..19d4b351 --- /dev/null +++ b/tests/data/seq_counts_logs/seq_count_2679966_5.out @@ -0,0 +1,2 @@ +REMOVED/8edbdee2-da52-4278-af40-267185bbcd7e/TRIntegrateJob/integrated/Test_8_22_2014_R2_example_S2_L007_I1_001.fastq.gz +70399028 1267182504 diff --git a/tests/data/seq_counts_logs/seq_count_2679966_6.err b/tests/data/seq_counts_logs/seq_count_2679966_6.err new file mode 100644 index 00000000..b587244d --- /dev/null +++ b/tests/data/seq_counts_logs/seq_count_2679966_6.err @@ -0,0 +1,3 @@ +This is an example .err file produced by seq_counts.sbatch. +Additional details removed. ++ seqtk size REMOVED/working_dir/8edbdee2-da52-4278-af40-267185bbcd7e/TRIntegrateJob/integrated/Test_8_22_2014_R2_example_S2_L007_R2_001.fastq.gz diff --git a/tests/data/seq_counts_logs/seq_count_2679966_6.out b/tests/data/seq_counts_logs/seq_count_2679966_6.out new file mode 100644 index 00000000..813c7a6c --- /dev/null +++ b/tests/data/seq_counts_logs/seq_count_2679966_6.out @@ -0,0 +1,2 @@ +REMOVED/8edbdee2-da52-4278-af40-267185bbcd7e/TRIntegrateJob/integrated/Test_8_22_2014_R2_example_S2_L007_R2_001.fastq.gz +64464162 8370238082 diff --git a/tests/data/seq_counts_logs/seq_count_2679966_7.err b/tests/data/seq_counts_logs/seq_count_2679966_7.err new file mode 100644 index 00000000..e353b3f4 --- /dev/null +++ b/tests/data/seq_counts_logs/seq_count_2679966_7.err @@ -0,0 +1,3 @@ +This is an example .err file produced by seq_counts.sbatch. +Additional details removed. ++ seqtk size REMOVED/working_dir/8edbdee2-da52-4278-af40-267185bbcd7e/TRIntegrateJob/integrated/Test_8_22_2014_R1_example_S3_L007_I1_001.fastq.gz diff --git a/tests/data/seq_counts_logs/seq_count_2679966_7.out b/tests/data/seq_counts_logs/seq_count_2679966_7.out new file mode 100644 index 00000000..33df5d01 --- /dev/null +++ b/tests/data/seq_counts_logs/seq_count_2679966_7.out @@ -0,0 +1,2 @@ +REMOVED/8edbdee2-da52-4278-af40-267185bbcd7e/TRIntegrateJob/integrated/Test_8_22_2014_R1_example_S3_L007_I1_001.fastq.gz +64464162 1160354916 diff --git a/tests/data/seqs.interleaved.fastq b/tests/data/seqs.interleaved.fastq new file mode 100644 index 00000000..741d7d4c --- /dev/null +++ b/tests/data/seqs.interleaved.fastq @@ -0,0 +1,38 @@ +@1::MUX::FS10001773:68:BTR67708-1611:1:1101:3900:1600/1 BX:Z:TAGACACGAAGGTTGGAC +AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF +@1::MUX::FS10001773:68:BTR67708-1611:1:1101:3900:1600/2 BX:Z:TAGACACGAAGGTTGGAC +TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:F:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FF,FFFFFFFFFFFFFFFFFFFF +@1::MUX::FS10001773:68:BTR67708-1611:1:1101:7740:1600/1 BX:Z:AAAGATGAGGGCAGTTAA +CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF +@1::MUX::FS10001773:68:BTR67708-1611:1:1101:7740:1600/2 BX:Z:AAAGATGAGGGCAGTTAA +GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF +@1::MUX::FS10001773:68:BTR67708-1611:1:1101:12790:1600/1 BX:Z:TGGGGGTCGTAACACGAA +AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF +@1::MUX::FS10001773:68:BTR67708-1611:1:1101:12790:1600/2 BX:Z:TGGGGGTCGTAACACGAA +TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFF::FFFFF,FFFFFF +@1::MUX::FS10001773:68:BTR67708-1611:1:1101:13250:1600/1 BX:Z:CGAGGCAGACTTGAATGC +CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFF:FFFFF:FFFFFFF +@1::MUX::FS10001773:68:BTR67708-1611:1:1101:13250:1600/2 BX:Z:CGAGGCAGACTTGAATGC +GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFF:FFFFFFFFF +@1::MUX::FS10001773:68:BTR67708-1611:1:1101:13520:1600/1 BX:Z:CAGACACGTAGGTGGGAC +AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF +@1::MUX::FS10001773:68:BTR67708-1611:1:1101:13520:1600/2 BX:Z:CAGACACGTAGGTGGGAC +TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT diff --git a/tests/data/seqs.interleaved.filter_alignment.fastq b/tests/data/seqs.interleaved.filter_alignment.fastq new file mode 100644 index 00000000..232ff96f --- /dev/null +++ b/tests/data/seqs.interleaved.filter_alignment.fastq @@ -0,0 +1,38 @@ +@1::MUX::FS10001773:68:BTR67708-1611:1:1101:3900:1600/1 +AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF +@1::MUX::FS10001773:68:BTR67708-1611:1:1101:3900:1600/2 +TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:F:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FF,FFFFFFFFFFFFFFFFFFFF +@1::MUX::FS10001773:68:BTR67708-1611:1:1101:7740:1600/1 +CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF +@1::MUX::FS10001773:68:BTR67708-1611:1:1101:7740:1600/2 +GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF +@1::MUX::FS10001773:68:BTR67708-1611:1:1101:12790:1600/1 +AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF +@1::MUX::FS10001773:68:BTR67708-1611:1:1101:12790:1600/2 +TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFF::FFFFF,FFFFFF +@1::MUX::FS10001773:68:BTR67708-1611:1:1101:13250:1600/1 +CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFF:FFFFF:FFFFFFF +@1::MUX::FS10001773:68:BTR67708-1611:1:1101:13250:1600/2 +GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFF:FFFFFFFFF +@1::MUX::FS10001773:68:BTR67708-1611:1:1101:13520:1600/1 +AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ++ +FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF +@1::MUX::FS10001773:68:BTR67708-1611:1:1101:13520:1600/2 +TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT diff --git a/qp_klp/tests/data/tellread_test.sbatch b/tests/data/tellread_test.sbatch similarity index 69% rename from qp_klp/tests/data/tellread_test.sbatch rename to tests/data/tellread_test.sbatch index 82c79e0a..32c0f13f 100644 --- a/qp_klp/tests/data/tellread_test.sbatch +++ b/tests/data/tellread_test.sbatch @@ -6,15 +6,15 @@ #SBATCH --mem 16G #SBATCH --time 1440 -#SBATCH --output /home/runner/qp-knight-lab-processing/qp_klp/tests/data/077c4da8-74eb-4184-8860-0207f53623be/TellReadJob/logs/tellread_%x-%A.out -#SBATCH --error /home/runner/qp-knight-lab-processing/qp_klp/tests/data/077c4da8-74eb-4184-8860-0207f53623be/TellReadJob/logs/tellread_%x-%A.err +#SBATCH --output /home/runner/qp-knight-lab-processing/tests/data/077c4da8-74eb-4184-8860-0207f53623be/TellReadJob/logs/tellread_%x-%A.out +#SBATCH --error /home/runner/qp-knight-lab-processing/tests/data/077c4da8-74eb-4184-8860-0207f53623be/TellReadJob/logs/tellread_%x-%A.err set -x module load singularity_3.6.4 /home/user/tellread-release-novaseqX/run_tellread_sing.sh \ - -i qp_klp/tests/data/211021_A00000_0000_SAMPLE \ - -o /home/runner/qp-knight-lab-processing/qp_klp/tests/data/077c4da8-74eb-4184-8860-0207f53623be/TellReadJob \ + -i tests/data/211021_A00000_0000_SAMPLE \ + -o /home/runner/qp-knight-lab-processing/tests/data/077c4da8-74eb-4184-8860-0207f53623be/TellReadJob \ -s $(echo C501,C509,C502,C510,C503,C511,C504,C512,C505,C513,C506,C514,C507,C515,C508,C516,C517,C525,C518,C526,C519,C527,C520,C528,C521,C529,C522,C530,C523,C531,C524,C532,C533,C541,C534,C542,C535,C543,C536,C544,C537,C545,C538,C546,C539,C547,C540,C548,C549,C557,C550,C558,C551,C559,C552,C560,C553,C561,C554,C562,C555,C563,C556,C564,C565,C573,C566,C574,C567,C575,C568,C576,C569,C577,C570,C578,C571,C579,C572,C580,C581,C589,C582,C590,C583,C591,C584,C592,C585,C593,C586,C594,C587,C595,C588,C596 | tr -d '"') \ -g $(echo NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE | tr -d '"') \ -j ${SLURM_JOB_CPUS_PER_NODE} \ @@ -26,11 +26,11 @@ module load singularity_3.6.4 # (4 checks per hour, for 8 hours equals 32 iterations) for i in $(seq 1 32); do - before="$(find /home/runner/qp-knight-lab-processing/qp_klp/tests/data/077c4da8-74eb-4184-8860-0207f53623be/TellReadJob/Full -type f -printf '%T@\n' | sort -n | tail -1)" + before="$(find /home/runner/qp-knight-lab-processing/tests/data/077c4da8-74eb-4184-8860-0207f53623be/TellReadJob/Full -type f -printf '%T@\n' | sort -n | tail -1)" # assume TellReadJob is finished if ctime hasn't changed in 15 minutes # for any fastq file in the directory. sleep 900 - after="$(find /home/runner/qp-knight-lab-processing/qp_klp/tests/data/077c4da8-74eb-4184-8860-0207f53623be/TellReadJob/Full -type f -printf '%T@\n' | sort -n | tail -1)" + after="$(find /home/runner/qp-knight-lab-processing/tests/data/077c4da8-74eb-4184-8860-0207f53623be/TellReadJob/Full -type f -printf '%T@\n' | sort -n | tail -1)" echo "$before $after" diff --git a/tests/data/tellseq_metag_dummy_sample_sheet.csv b/tests/data/tellseq_metag_dummy_sample_sheet.csv new file mode 100644 index 00000000..dccf189d --- /dev/null +++ b/tests/data/tellseq_metag_dummy_sample_sheet.csv @@ -0,0 +1,136 @@ +[Header],,,,,,,, +IEMFileVersion,1,,,,,,, +SheetType,tellseq_metag,,,,,,, +SheetVersion,10,,,,,,, +Investigator Name,Knight,,,,,,, +Experiment Name,RKLtest,,,,,,, +Date,5/6/24,,,,,,, +Workflow,GenerateFASTQ,,,,,,, +Application,FASTQ Only,,,,,,, +Assay,Metagenomic,,,,,,, +Description,,,,,,,, +Chemistry,Default,,,,,,, +,,,,,,,, +[Reads],,,,,,,, +151,,,,,,,, +151,,,,,,,, +,,,,,,,, +[Settings],,,,,,,, +ReverseComplement,0,,,,,,, +,,,,,,,, +[Data],,,,,,,, +Sample_ID,Sample_Name,Sample_Plate,well_id_384,barcode_id,Sample_Project,Well_description,Lane, +Test_8_10_2013_example,Test.8.10.2013.example,Test_Donor_SS_Samples_P1,A1,C501,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.8.10.2013.example,4, +Test_12_17_2014_example,Test.12.17.2014.example,Test_Donor_SS_Samples_P1,B1,C509,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.12.17.2014.example,4, +Test_4_4_2015_example,Test.4.4.2015.example,Test_Donor_SS_Samples_P1,C1,C502,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.4.4.2015.example,4, +Test_2_23_2015_example,Test.2.23.2015.example,Test_Donor_SS_Samples_P1,D1,C510,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.2.23.2015.example,4, +Test_9_28_2014_example,Test.9.28.2014.example,Test_Donor_SS_Samples_P1,E1,C503,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.9.28.2014.example,4, +Test_12_14_2013_example,Test.12.14.2013.example,Test_Donor_SS_Samples_P1,F1,C511,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.12.14.2013.example,4, +Test_4_7_2013_example,Test.4.7.2013.example,Test_Donor_SS_Samples_P1,G1,C504,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.4.7.2013.example,4, +Test_7_14_2013_example,Test.7.14.2013.example,Test_Donor_SS_Samples_P1,H1,C512,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.7.14.2013.example,4, +Test_10_27_2013_example,Test.10.27.2013.example,Test_Donor_SS_Samples_P1,I1,C505,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.10.27.2013.example,4, +Test_1_19_2014_example,Test.1.19.2014.example,Test_Donor_SS_Samples_P1,J1,C513,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.1.19.2014.example,4, +Test_9_3_2013_example,Test.9.3.2013.example,Test_Donor_SS_Samples_P1,K1,C506,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.9.3.2013.example,4, +Test_2_25_2013_example,Test.2.25.2013.example,Test_Donor_SS_Samples_P1,L1,C514,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.2.25.2013.example,4, +Test_7_26_2015_example,Test.7.26.2015.example,Test_Donor_SS_Samples_P1,M1,C507,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.7.26.2015.example,4, +Test_2_17_2014_example,Test.2.17.2014.example,Test_Donor_SS_Samples_P1,N1,C515,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.2.17.2014.example,4, +Test_6_29_2015_example,Test.6.29.2015.example,Test_Donor_SS_Samples_P1,O1,C508,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.6.29.2015.example,4, +Test_3_24_2015_example,Test.3.24.2015.example,Test_Donor_SS_Samples_P1,P1,C516,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.3.24.2015.example,4, +Test_1_6_2015_example,Test.1.6.2015.example,Test_Donor_SS_Samples_P1,A2,C517,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.1.6.2015.example,4, +T_Test_7_15_15B_example,T.Test.7.15.15B.example,Test_Donor_SS_Samples_P1,B2,C525,Tellseq_Shortread_Metagenomic_Analysis_00000,T.Test.7.15.15B.example,4, +Test_6_9_2013_example,Test.6.9.2013.example,Test_Donor_SS_Samples_P1,C2,C518,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.6.9.2013.example,4, +example_A_example,example.A.example,Test_Donor_SS_Samples_P1,D2,C526,Tellseq_Shortread_Metagenomic_Analysis_00000,example.A.example,4, +Test_8_22_2014_R2_example,Test.8.22.2014.R2.example,Test_Donor_SS_Samples_P1,E2,C519,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.8.22.2014.R2.example,4, +example_B_example,example.B.example,Test_Donor_SS_Samples_P1,F2,C527,Tellseq_Shortread_Metagenomic_Analysis_00000,example.B.example,4, +Test_8_22_2014_R1_example,Test.8.22.2014.R1.example,Test_Donor_SS_Samples_P1,G2,C520,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.8.22.2014.R1.example,4, +example_C_example,example.C.example,Test_Donor_SS_Samples_P1,H2,C528,Tellseq_Shortread_Metagenomic_Analysis_00000,example.C.example,4, +Test_12_28_2011_example,Test.12.28.2011.example,Test_Donor_SS_Samples_P1,I2,C521,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.12.28.2011.example,4, +example_D_example,example.D.example,Test_Donor_SS_Samples_P1,J2,C529,Tellseq_Shortread_Metagenomic_Analysis_00000,example.D.example,4, +Test_5_4_2014_example,Test.5.4.2014.example,Test_Donor_SS_Samples_P1,K2,C522,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.5.4.2014.example,4, +45208_1_1,45208.1.1,UROBIOME_TEST_MF_SAMPLES_P2,L2,C530,Tellseq_Shortread_Metagenomic_Analysis_00000,45208.1.1,4, +Test_11_6_2012_example,Test.11.6.2012.example,Test_Donor_SS_Samples_P1,M2,C523,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.11.6.2012.example,4, +45248_2_2,45248.2.2,UROBIOME_TEST_MF_SAMPLES_P2,N2,C531,Tellseq_Shortread_Metagenomic_Analysis_00000,45248.2.2,4, +Test_4_3_2012_example,Test.4.3.2012.example,Test_Donor_SS_Samples_P1,O2,C524,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.4.3.2012.example,4, +45261_2_1,45261.2.1,UROBIOME_TEST_MF_SAMPLES_P2,P2,C532,Tellseq_Shortread_Metagenomic_Analysis_00000,45261.2.1,4, +45272_11_2,45272.11.2,UROBIOME_TEST_MF_SAMPLES_P2,A3,C533,Tellseq_Shortread_Metagenomic_Analysis_00000,45272.11.2,4, +T_Test_7_12_15A,T.Test.7.12.15A,Example_Plus_Donor_Samples_P3,B3,C541,Tellseq_Shortread_Metagenomic_Analysis_00000,T.Test.7.12.15A,4, +45316_8_1,45316.8.1,UROBIOME_TEST_MF_SAMPLES_P2,C3,C534,Tellseq_Shortread_Metagenomic_Analysis_00000,45316.8.1,4, +T_Test_7_8_15A,T.Test.7.8.15A,Example_Plus_Donor_Samples_P3,D3,C542,Tellseq_Shortread_Metagenomic_Analysis_00000,T.Test.7.8.15A,4, +45327_7_2,45327.7.2,UROBIOME_TEST_MF_SAMPLES_P2,E3,C535,Tellseq_Shortread_Metagenomic_Analysis_00000,45327.7.2,4, +Test_8_10_2013,Test.8.10.2013,Test_Time_Series_ABSQ_P4,F3,C543,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.8.10.2013,4, +45272_1_swab_2,45272.1.swab.2,UROBIOME_TEST_MF_SAMPLES_P2,G3,C536,Tellseq_Shortread_Metagenomic_Analysis_00000,45272.1.swab.2,4, +Test_6_29_2015,Test.6.29.2015,Test_Time_Series_ABSQ_P4,H3,C544,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.6.29.2015,4, +45326_1_swab_2,45326.1.swab.2,UROBIOME_TEST_MF_SAMPLES_P2,I3,C537,Tellseq_Shortread_Metagenomic_Analysis_00000,45326.1.swab.2,4, +Test_3_8_2015,Test.3.8.2015,Test_Time_Series_ABSQ_P4,J3,C545,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.3.8.2015,4, +T_Test_7_19_15A,T.Test.7.19.15A,Example_Plus_Donor_Samples_P3,K3,C538,Tellseq_Shortread_Metagenomic_Analysis_00000,T.Test.7.19.15A,4, +Test_4_29_2013,Test.4.29.2013,Test_Time_Series_ABSQ_P4,L3,C546,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.4.29.2013,4, +T_Test_7_15_15B,T.Test.7.15.15B,Example_Plus_Donor_Samples_P3,M3,C539,Tellseq_Shortread_Metagenomic_Analysis_00000,T.Test.7.15.15B,4, +Test_11_16_2014,Test.11.16.2014,Test_Time_Series_ABSQ_P4,N3,C547,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.11.16.2014,4, +T_Test_7_19_15B,T.Test.7.19.15B,Example_Plus_Donor_Samples_P3,O3,C540,Tellseq_Shortread_Metagenomic_Analysis_00000,T.Test.7.19.15B,4, +Test_1_19_2014,Test.1.19.2014,Test_Time_Series_ABSQ_P4,P3,C548,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.1.19.2014,4, +Test_3_24_2015,Test.3.24.2015,Test_Time_Series_ABSQ_P4,A4,C549,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.3.24.2015,4, +Test_2_8_2013,Test.2.8.2013,Test_Time_Series_ABSQ_P4,B4,C557,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.2.8.2013,4, +Test_11_10_2013,Test.11.10.2013,Test_Time_Series_ABSQ_P4,C4,C550,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.11.10.2013,4, +Marine_Sediment_0_2cm_R1,Marine.Sediment.0.2cm.R1,MarineSediment_Donor_Test_NoProK_P5,D4,C558,Tellseq_Shortread_Metagenomic_Analysis_00000,Marine.Sediment.0.2cm.R1,4, +Test_3_23_2014,Test.3.23.2014,Test_Time_Series_ABSQ_P4,E4,C551,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.3.23.2014,4, +Marine_Sediment_5_7cm_R1,Marine.Sediment.5.7cm.R1,MarineSediment_Donor_Test_NoProK_P5,F4,C559,Tellseq_Shortread_Metagenomic_Analysis_00000,Marine.Sediment.5.7cm.R1,4, +Test_1_14_2015,Test.1.14.2015,Test_Time_Series_ABSQ_P4,G4,C552,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.1.14.2015,4, +Marine_Sediment_10_12cm_R2,Marine.Sediment.10.12cm.R2,MarineSediment_Donor_Test_NoProK_P5,H4,C560,Tellseq_Shortread_Metagenomic_Analysis_00000,Marine.Sediment.10.12cm.R2,4, +Test_8_25_2014,Test.8.25.2014,Test_Time_Series_ABSQ_P4,I4,C553,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.8.25.2014,4, +Marine_Sediment_15_17cm_R1,Marine.Sediment.15.17cm.R1,MarineSediment_Donor_Test_NoProK_P5,J4,C561,Tellseq_Shortread_Metagenomic_Analysis_00000,Marine.Sediment.15.17cm.R1,4, +Test_1_26_2013,Test.1.26.2013,Test_Time_Series_ABSQ_P4,K4,C554,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.1.26.2013,4, +Marine_Sediment_20_22cm_R1,Marine.Sediment.20.22cm.R1,MarineSediment_Donor_Test_NoProK_P5,L4,C562,Tellseq_Shortread_Metagenomic_Analysis_00000,Marine.Sediment.20.22cm.R1,4, +Test_6_16_2014,Test.6.16.2014,Test_Time_Series_ABSQ_P4,M4,C555,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.6.16.2014,4, +Marine_Sediment_25_27cm_R2,Marine.Sediment.25.27cm.R2,MarineSediment_Donor_Test_NoProK_P5,N4,C563,Tellseq_Shortread_Metagenomic_Analysis_00000,Marine.Sediment.25.27cm.R2,4, +Test_7_27_2014,Test.7.27.2014,Test_Time_Series_ABSQ_P4,O4,C556,Tellseq_Shortread_Metagenomic_Analysis_00000,Test.7.27.2014,4, +Marine_Sediment_30_32cm_R3,Marine.Sediment.30.32cm.R3,MarineSediment_Donor_Test_NoProK_P5,P4,C564,Tellseq_Shortread_Metagenomic_Analysis_00000,Marine.Sediment.30.32cm.R3,4, +example_A_R3,example.A.R3,MarineSediment_Donor_Test_NoProK_P5,A5,C565,Tellseq_Shortread_Metagenomic_Analysis_00000,example.A.R3,4, +Soil_Test_T4_2_Tube5,Soil.Test.T4.2.Tube5,16_member_community_native_soil_P6,B5,C573,Tellseq_Shortread_Metagenomic_Analysis_00000,Soil.Test.T4.2.Tube5,4, +example_B_R2,example.B.R2,MarineSediment_Donor_Test_NoProK_P5,C5,C566,Tellseq_Shortread_Metagenomic_Analysis_00000,example.B.R2,4, +A21,A21,Tumor_Community_P7,D5,C574,Tellseq_Shortread_Metagenomic_Analysis_00000,A21,4, +example_C_R4,example.C.R4,MarineSediment_Donor_Test_NoProK_P5,E5,C567,Tellseq_Shortread_Metagenomic_Analysis_00000,example.C.R4,4, +A23,A23,Tumor_Community_P7,F5,C575,Tellseq_Shortread_Metagenomic_Analysis_00000,A23,4, +example_D_R2,example.D.R2,MarineSediment_Donor_Test_NoProK_P5,G5,C568,Tellseq_Shortread_Metagenomic_Analysis_00000,example.D.R2,4, +A27,A27,Tumor_Community_P7,H5,C576,Tellseq_Shortread_Metagenomic_Analysis_00000,A27,4, +Soil_Test_T1_2_Tube1,Soil.Test.T1.2.Tube1,16_member_community_native_soil_P6,I5,C569,Tellseq_Shortread_Metagenomic_Analysis_00000,Soil.Test.T1.2.Tube1,4, +A30,A30,Tumor_Community_P7,J5,C577,Tellseq_Shortread_Metagenomic_Analysis_00000,A30,4, +Soil_Test_T2_2_Tube2,Soil .Test.T2.2.Tube2,16_member_community_native_soil_P6,K5,C570,Tellseq_Shortread_Metagenomic_Analysis_00000,Soil.Test.T2.2.Tube2,4, +A31,A31,Tumor_Community_P7,L5,C578,Tellseq_Shortread_Metagenomic_Analysis_00000,A31,4, +Soil_Test_T3_2_Tube3,Soil.Test.T3.2.Tube3,16_member_community_native_soil_P6,M5,C571,Tellseq_Shortread_Metagenomic_Analysis_00000,Soil.Test.T3.2.Tube3,4, +Test1_T1_A,Test1.T1.A,Tumor_Community_P7,N5,C579,Tellseq_Shortread_Metagenomic_Analysis_00000,Test1.T1.A,4, +Soil_Test_T4_1_Tube4,Soil.Test.T4.1.Tube4,16_member_community_native_soil_P6,O5,C572,Tellseq_Shortread_Metagenomic_Analysis_00000,Soil.Test.T4.1.Tube4,4, +Test2_T1_B_A,Test2.T1.B.A,Tumor_Community_P7,P5,C580,Tellseq_Shortread_Metagenomic_Analysis_00000,Test2.T1.B.A,4, +Test2_T1_01BH1_Y_A,Test2.T1.01BH1.Y.A,Tumor_Community_P7,A6,C581,Tellseq_Shortread_Metagenomic_Analysis_00000,Test2.T1.01BH1.Y.A,4, +Test1_T1_1test_A,Test1.T1.1test.A,Tumor_Community_P7,B6,C589,Tellseq_Shortread_Metagenomic_Analysis_00000,Test1.T1.1test.A,4, +Test2_MT1_1ex_Y_A,Test2.MT1.1ex.Y.A,Tumor_Community_P7,C6,C582,Tellseq_Shortread_Metagenomic_Analysis_00000,Test2.MT1.1ex.Y.A,4, +Test1_M1_B_1test_A,Test1.M1.B.1test.A,Tumor_Community_P7,D6,C590,Tellseq_Shortread_Metagenomic_Analysis_00000,Test1.M1.B.1test.A,4, +Test1_T1_B_Sample_A,Test1.T1.B.Sample.A,Tumor_Community_P7,E6,C583,Tellseq_Shortread_Metagenomic_Analysis_00000,Test1.T1.B.Sample.A,4, +BLANK_K15_test,BLANK.K15.test,Tumor_Community_P7,F6,C591,Tellseq_Shortread_Metagenomic_Analysis_00000,BLANK.K15.test,4, +Test2_MT1_Sample_A,Test2.MT1.Sample.A,Tumor_Community_P7,G6,C584,Tellseq_Shortread_Metagenomic_Analysis_00000,Test2.MT1.Sample.A,4, +BLANK_M15_test,BLANK.M15.test,Tumor_Community_P7,H6,C592,Tellseq_Shortread_Metagenomic_Analysis_00000,BLANK.M15.test,4, +Test2_T1_A,Test2.T1.A,Tumor_Community_P7,I6,C585,Tellseq_Shortread_Metagenomic_Analysis_00000,Test2.T1.A,4, +BLANK_O15_test,BLANK.O15.test,Tumor_Community_P7,J6,C593,Tellseq_Shortread_Metagenomic_Analysis_00000,BLANK.O15.test,4, +1test_M_CNTL_A,1test.M.CNTL.A,Tumor_Community_P7,K6,C586,Tellseq_Shortread_Metagenomic_Analysis_00000,1test.M.CNTL.A,4, +BLANK_A17_test,BLANK.A17.test,Tumor_Community_P7,L6,C594,Tellseq_Shortread_Metagenomic_Analysis_00000,BLANK.A17.test,4, +1test_G_CNTL_A,1test.G.CNTL.A,Tumor_Community_P7,M6,C587,Tellseq_Shortread_Metagenomic_Analysis_00000,1test.G.CNTL.A,4, +BLANK_C17_test,BLANK.C17.test,Tumor_Community_P7,N6,C595,Tellseq_Shortread_Metagenomic_Analysis_00000,BLANK.C17.test,4, +GC_2atest_A,GC.2atest.A,Tumor_Community_P7,O6,C588,Tellseq_Shortread_Metagenomic_Analysis_00000,GC.2atest.A,4, +BLANK_E17_test,BLANK.E17.test,Tumor_Community_P7,P6,C596,Tellseq_Shortread_Metagenomic_Analysis_00000,BLANK.E17.test,4, +,,,,,,,, +[Bioinformatics],,,,,,,, +Sample_Project,QiitaID,BarcodesAreRC,ForwardAdapter,ReverseAdapter,HumanFiltering,library_construction_protocol,experiment_design_description,contains_replicates +Tellseq_Shortread_Metagenomic_Analysis_00000,00000,True,GATCGGAAGAGCACACGTCTGAACTCCAGTCAC,GATCGGAAGAGCGTCGTGTAGGGAAAGGAGTGT,True,tellseq,tellseq metagenomics,False +,,,,,,,, +[Contact],,,,,,,, +Sample_Project,Email,,,,,,, +Tellseq_Shortread_Metagenomic_Analysis_00000,test@gmail.com,,,,,,, +,,,,,,,, +[SampleContext],,,,,,,, +sample_name,sample_type,primary_qiita_study,secondary_qiita_studies,,,,, +BLANK.K15.test,control blank,00000,,,,,, +BLANK.M15.test,control blank,00000,,,,,, +BLANK.O15.test,control blank,00000,,,,,, +BLANK.A17.test,control blank,00000,,,,,, +BLANK.C17.test,control blank,00000,,,,,, +BLANK.E17.test,control blank,00000,,,,,, +,,,,,,,, diff --git a/tests/data/tellseq_output/integrate_test.sbatch b/tests/data/tellseq_output/integrate_test.sbatch new file mode 100644 index 00000000..63cfb237 --- /dev/null +++ b/tests/data/tellseq_output/integrate_test.sbatch @@ -0,0 +1,67 @@ +#!/bin/bash -l +#SBATCH -J integrate +#SBATCH --time 96:00:00 +#SBATCH --mem 16G +#SBATCH -N 1 +#SBATCH -c 4 +#SBATCH -p qiita +#SBATCH --array=1-96 + +#SBATCH --output tests/2caa8226-cf69-45a3-bd40-1e90ec3d18d0/TRIntegrateJob/logs/integrate_%x_%A_%a.out +#SBATCH --error tests/2caa8226-cf69-45a3-bd40-1e90ec3d18d0/TRIntegrateJob/logs/integrate_%x_%A_%a.err + +set -x +set -e + +samples=($(cat tests/2caa8226-cf69-45a3-bd40-1e90ec3d18d0/TRIntegrateJob/sample_index_list.txt | cut -f 2)) +sample=${samples[$((${SLURM_ARRAY_TASK_ID} - 1))]} + +export TMPDIR=tests/2caa8226-cf69-45a3-bd40-1e90ec3d18d0/TRIntegrateJob/tmp + +# get list of samples and determine which sample this array instance will work +# on. +samples=($(cat tests/2caa8226-cf69-45a3-bd40-1e90ec3d18d0/TRIntegrateJob/sample_index_list.txt | cut -f 2)) +sample=${samples[$((${SLURM_ARRAY_TASK_ID} - 1))]} + +echo "Processing sample ${sample}..." + +# make temp directory +export TMPDIR=tests/2caa8226-cf69-45a3-bd40-1e90ec3d18d0/TRIntegrateJob/tmp +mkdir -p $TMPDIR + + +# TODO: All three input files must be non-zero in length. +# If possible, do this check as part of normal FSR operation. +# Previously this was done right here BEFORE integrating, rather +# than after. + +# NB: non-zero file-length check removed for now. This should be performed +# by FSR after processing is done. +# TODO: Make sure raw_fastq_dir is TellReadJob/Full +r1_in=tests/2caa8226-cf69-45a3-bd40-1e90ec3d18d0/TellReadJob/Full/TellReadJob_R1_${sample}.fastq.gz.corrected.err_barcode_removed.fastq +r2_in=tests/2caa8226-cf69-45a3-bd40-1e90ec3d18d0/TellReadJob/Full/TellReadJob_R2_${sample}.fastq.gz.corrected.err_barcode_removed.fastq +i1_in=tests/2caa8226-cf69-45a3-bd40-1e90ec3d18d0/TellReadJob/Full/TellReadJob_I1_${sample}.fastq.gz.corrected.err_barcode_removed.fastq + +# create output directory +mkdir -p tests/2caa8226-cf69-45a3-bd40-1e90ec3d18d0/TRIntegrateJob/integrated + +# generate output file names +r1_out=tests/2caa8226-cf69-45a3-bd40-1e90ec3d18d0/TRIntegrateJob/integrated/${sample}.R1.fastq.gz +r2_out=tests/2caa8226-cf69-45a3-bd40-1e90ec3d18d0/TRIntegrateJob/integrated/${sample}.R2.fastq.gz +i1_out=tests/2caa8226-cf69-45a3-bd40-1e90ec3d18d0/TRIntegrateJob/integrated/${sample}.I1.fastq.gz + +# generate 'integrated' I1 fastq.gz file. We do this as part of each array so +# they're done in parallel. +gzip -c ${i1_in} > ${i1_out} + +# generate integrated R1 and R2 fastq.gz files. +conda activate qp-knight-lab-processing-2022.03 + +python src/sequence_processing_pipeline/contrib/integrate-indices-np.py integrate \ +--no-sort \ +--r1-in ${r1_in} \ +--r2-in ${r2_in} \ +--i1-in ${i1_in} \ +--r1-out ${r1_out} \ +--r2-out ${r2_out} \ +--threads 4 diff --git a/tests/data/tellseq_output/tellread_test.sbatch b/tests/data/tellseq_output/tellread_test.sbatch new file mode 100644 index 00000000..1de15c38 --- /dev/null +++ b/tests/data/tellseq_output/tellread_test.sbatch @@ -0,0 +1,47 @@ +#!/bin/bash -l +#SBATCH -J tellread +#SBATCH -p qiita +#SBATCH -N 1 +#SBATCH -c 4 +#SBATCH --mem 16G +#SBATCH --time 96:00:00 + +#SBATCH --output tests/2caa8226-cf69-45a3-bd40-1e90ec3d18d0/TellReadJob/logs/tellread_%x-%A.out +#SBATCH --error tests/2caa8226-cf69-45a3-bd40-1e90ec3d18d0/TellReadJob/logs/tellread_%x-%A.err + +set -x + +module load singularity_3.6.4 +$HOME/qiita-spots/tellread-release-novaseqX/run_tellread_sing.sh \ + -i tests/data/sample_run_directories/150629_SN1001_0511_AH5L7GBCXX \ + -o tests/2caa8226-cf69-45a3-bd40-1e90ec3d18d0/TellReadJob \ + -s $(echo C501,C509,C502,C510,C503,C511,C504,C512,C505,C513,C506,C514,C507,C515,C508,C516,C517,C525,C518,C526,C519,C527,C520,C528,C521,C529,C522,C530,C523,C531,C524,C532,C533,C541,C534,C542,C535,C543,C536,C544,C537,C545,C538,C546,C539,C547,C540,C548,C549,C557,C550,C558,C551,C559,C552,C560,C553,C561,C554,C562,C555,C563,C556,C564,C565,C573,C566,C574,C567,C575,C568,C576,C569,C577,C570,C578,C571,C579,C572,C580,C581,C589,C582,C590,C583,C591,C584,C592,C585,C593,C586,C594,C587,C595,C588,C596 | tr -d '"') \ + -g $(echo NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE | tr -d '"') \ + -j ${SLURM_JOB_CPUS_PER_NODE} \ + -l s_4 + +# get the timestamp for the most recently changed file in directory '.' + +# hard-limit for wait time set to ~ 8 hours. +# (4 checks per hour, for 8 hours equals 32 iterations) +for i in $(seq 1 32); +do + before="$(find tests/2caa8226-cf69-45a3-bd40-1e90ec3d18d0/TellReadJob/Full -type f -printf '%T@\n' | sort -n | tail -1)" + # assume TellReadJob is finished if ctime hasn't changed in 15 minutes + # for any fastq file in the directory. + sleep 900 + after="$(find tests/2caa8226-cf69-45a3-bd40-1e90ec3d18d0/TellReadJob/Full -type f -printf '%T@\n' | sort -n | tail -1)" + + echo "$before $after" + + if [[ "$before" == "$after" ]]; then + echo "DONE" + exit 0 + else + echo "NOT DONE" + fi +done + +# if we've reached this point then we've exceeded our hard-limit for waiting. +# return w/an error. +exit 1 diff --git a/qp_klp/tests/good-prep-file-small.txt b/tests/good-prep-file-small.txt similarity index 100% rename from qp_klp/tests/good-prep-file-small.txt rename to tests/good-prep-file-small.txt diff --git a/tests/test_ConvertJob.py b/tests/test_ConvertJob.py new file mode 100644 index 00000000..f394cfb8 --- /dev/null +++ b/tests/test_ConvertJob.py @@ -0,0 +1,1252 @@ +from os.path import join, abspath, exists, dirname +from os import makedirs +from sequence_processing_pipeline.ConvertJob import ConvertJob +from sequence_processing_pipeline.PipelineError import (PipelineError, + JobFailedError) +from functools import partial +import unittest +from shutil import rmtree + + +class TestConvertJob(unittest.TestCase): + def setUp(self): + # A list of sample-ids found within good-sample-sheet.csv. + self.feist_ids = ['JM-Metabolic__GN04255', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22', + 'Pputida_PALE__HGL_Pputida_148', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384', + 'stALE_E_coli_A8_F42_I1_R1', 'JBI_KHP_HGL_022', + 'Pputida_TALE__HGL_Pputida_126', + 'Pputida_TALE__HGL_Pputida_115', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_28_28', + 'CDPH-SAL_Salmonella_Typhi_MDL-144', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_4_48', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_30_22', + 'CDPH-SAL_Salmonella_Typhi_MDL-159', + 'JM-Metabolic__GN03409', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_32_20', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364', + 'JM-Metabolic__GN02531', + 'stALE_E_coli_A10_F131_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399', + 'Pputida_PALE__HGL_Pputida_155', + 'Pputida_PALE__HGL_Pputida_166', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327', + 'P21_E_coli_ELI350', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64', + 'JM-Metabolic__GN0_2393', + 'JBI_KHP_HGL_029_Amitesh_oxyR', + 'stALE_E_coli_A11_F21_I1_R1', 'P21_E_coli_ELI363', + 'stALE_E_coli_A18_F39_I1_R1', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_32_6', + 'JBI_KHP_HGL_023', 'stALE_E_coli_A12_F21_I1_R1', + 'Pputida_PALE__HGL_Pputida_149', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385', + 'CDPH-SAL_Salmonella_Typhi_MDL-145', + 'Pputida_TALE__HGL_Pputida_114', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378', + 'Pputida_TALE__HGL_Pputida_127', 'P21_E_coli_ELI362', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_30_60', + 'P21_E_coli_ELI351', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326', + 'Pputida_JBEI__HGL_Pputida_108_BP7', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23', + 'CDPH-SAL_Salmonella_Typhi_MDL-158', + 'JM-Metabolic__GN0_2007', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356', + 'Pputida_PALE__HGL_Pputida_167', + 'JM-Metabolic__GN0_2165', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_24_9', + 'stALE_E_coli_A13_F20_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398', + 'JM-Metabolic__GN04563', + 'Pputida_PALE__HGL_Pputida_154', 'P21_E_coli_ELI344', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370', + 'Pputida_PALE__HGL_Pputida_172', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46', + 'JM-Metabolic__GN0_2354', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_22_52', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_18_59', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404', + 'P21_E_coli_ELI359', 'Pputida_TALE__HGL_Pputida_142', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516', + 'JM-Metabolic__GN0_2317', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624', + 'stALE_E_coli_A10_F43_I1_R1', + 'CDPH-SAL_Salmonella_Typhi_MDL-150', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474', + 'CDPH-SAL_Salmonella_Typhi_MDL-163', + 'Pputida_TALE__HGL_Pputida_132', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_28_13', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_18_35', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371', + 'JM-Metabolic__GN02446', + 'Pputida_PALE__HGL_Pputida_173', + 'JM-Metabolic__GN04014', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418', + 'JM-Metabolic__GN02567', 'P21_E_coli_ELI345', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62', + 'Pputida_JBEI__HGL_Pputida_107_BP6', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517', + 'Pputida_TALE__HGL_Pputida_133', + 'CDPH-SAL_Salmonella_Typhi_MDL-162', + 'CDPH-SAL_Salmonella_Typhi_MDL-151', + 'stALE_E_coli_A12_F136_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101', + 'Pputida_TALE__HGL_Pputida_143', 'P21_E_coli_ELI358', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368', + 'CDPH-SAL_Salmonella_Typhi_MDL-155', + 'CDPH-SAL_Salmonella_Typhi_MDL-166', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_20_16', + 'Pputida_TALE__HGL_Pputida_137', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520', + 'Pputida_PALE__HGL_Pputida_159', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401', + 'stALE_E_coli_A10_F21_I1_R1', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41', + 'JM-Metabolic__GN05128', + 'JBI_KHP_HGL_031_Amitesh_rpoS', + 'JM-Metabolic__GN0_2175', 'JM-Metabolic__GN0_2290', + 'JM-Metabolic__GN04540', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388', + 'CDPH-SAL_Salmonella_Typhi_MDL-148', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375', + 'Pputida_TALE__HGL_Pputida_119', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_10_13', + 'JM-Metabolic__GN02769', 'stALE_E_coli_A1_F21_I1_R1', + 'RMA_KHP_rpoS_Mage_Q97N', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24', + 'Pputida_TALE__HGL_Pputida_136', + 'CDPH-SAL_Salmonella_Typhi_MDL-167', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61', + 'CDPH-SAL_Salmonella_Typhi_MDL-154', + 'stALE_E_coli_A2_F21_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369', + 'Pputida_PALE__HGL_Pputida_158', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521', + 'JM-Metabolic__GN0_2169', + 'stALE_E_coli_A4_F21_I1_R2', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_10_51', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389', + 'Pputida_PALE__HGL_Pputida_145', + 'Pputida_PALE__HGL_Pputida_176', + 'Pputida_TALE__HGL_Pputida_118', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374', + 'CDPH-SAL_Salmonella_Typhi_MDL-149', + 'JM-Metabolic__GN04488', + 'Pputida_JBEI__HGL_Pputida_109_BP8', + 'P21_E_coli_ELI355', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408', + 'P21_E_coli_ELI366', 'stALE_E_coli_A9_F21_I1_R1', + 'Pputida_PALE__HGL_Pputida_150', + 'JM-Metabolic__GN04682', + 'Pputida_JBEI__HGL_Pputida_111_M5', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485', + 'stALE_E_coli_A11_F43_I1_R1', + 'Pputida_PALE__HGL_Pputida_163', + 'stALE_E_coli_A17_F118_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352', + 'P21_E_coli_ELI348', 'JM-Metabolic__GN04094', + 'JM-Metabolic__GN04612', 'stALE_E_coli_A8_F20_I1_R1', + 'Pputida_TALE__HGL_Pputida_123', + 'JM-Metabolic__GN02529', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381', + 'JBI_KHP_HGL_027', 'Pputida_PALE__HGL_Pputida_162', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484', + 'Pputida_PALE__HGL_Pputida_151', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_26_6', + 'P21_E_coli_ELI367', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409', + 'stALE_E_coli_A13_F42_I1_R1', 'P21_E_coli_ELI354', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_10_28', + 'Pputida_TALE__HGL_Pputida_122', 'JBI_KHP_HGL_026', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_24_52', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57', + 'P21_E_coli_ELI349', 'JM-Metabolic__GN0_2215', + 'stALE_E_coli_A12_F43_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383', + 'JM-Metabolic__GN0_2337', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41', + 'JM-Metabolic__GN02449', 'JBI_KHP_HGL_025', + 'JM-Metabolic__GN0_2183', + 'stALE_E_coli_A15_F42_I1_R1', + 'Pputida_TALE__HGL_Pputida_121', + 'JM-Metabolic__GN02487', + 'CDPH-SAL_Salmonella_Typhi_MDL-143', + 'Pputida_TALE__HGL_Pputida_112', + 'JM-Metabolic__GN03218', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_20_43', + 'JM-Metabolic__GN05002', 'stALE_E_coli_A4_F42_I1_R1', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49', + 'Pputida_PALE__HGL_Pputida_152', + 'JM-Metabolic__GN05377', + 'Pputida_PALE__HGL_Pputida_161', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518', + 'P21_E_coli_ELI357', 'RMA_KHP_rpoS_Mage_Q97D', + 'P21_E_coli_ELI364', 'JM-Metabolic__GN02424', + 'JM-Metabolic__GN0_2375', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25', + 'stALE_E_coli_A7_F42_I1_R1', 'JM-Metabolic__GN03132', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_20_71', + 'Pputida_JBEI__HGL_Pputida_110_M2', + 'JBI_KHP_HGL_024', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42', + 'stALE_E_coli_A18_F18_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382', + 'JM-Metabolic__GN0_2254', + 'Pputida_TALE__HGL_Pputida_113', + 'JM-Metabolic__GN04428', + 'Pputida_TALE__HGL_Pputida_120', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_32_56', + 'P21_E_coli_ELI365', 'RMA_KHP_rpoS_Mage_Q97E', + 'stALE_E_coli_A16_F42_I1_R1', + 'stALE_E_coli_A6_F43_I1_R1', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_6_21', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_4_23', + 'stALE_E_coli_A15_F117_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519', + 'Pputida_PALE__HGL_Pputida_160', + 'Pputida_PALE__HGL_Pputida_153', + 'stALE_E_coli_A4_F21_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078', + 'stALE_E_coli_A14_F20_I1_R1', + 'JM-Metabolic__GN0_2380', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377', + 'Pputida_TALE__HGL_Pputida_128', + 'Pputida_PALE__HGL_Pputida_175', + 'JM-Metabolic__GN03252', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_26_69', + 'Pputida_PALE__HGL_Pputida_146', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25', + 'JM-Metabolic__GN02657', + 'stALE_E_coli_A15_F21_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55', + 'Pputida_PALE__HGL_Pputida_168', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397', + 'stALE_E_coli_A9_F44_I1_R1', + 'CDPH-SAL_Salmonella_Typhi_MDL-157', + 'Pputida_TALE__HGL_Pputida_135', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_22_16', + 'CDPH-SAL_Salmonella_Typhi_MDL-164', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473', + 'Pputida_TALE__HGL_Pputida_129', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_6_35', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376', + 'Pputida_PALE__HGL_Pputida_147', + 'Pputida_PALE__HGL_Pputida_174', + 'stALE_E_coli_A3_F40_I1_R1', + 'JM-Metabolic__GN0_2099', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396', + 'stALE_E_coli_A7_F21_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523', + 'Pputida_PALE__HGL_Pputida_169', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50', + 'JM-Metabolic__GN0_2009', + 'CDPH-SAL_Salmonella_Typhi_MDL-165', + 'Pputida_TALE__HGL_Pputida_134', + 'CDPH-SAL_Salmonella_Typhi_MDL-156', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402', + 'RMA_KHP_rpoS_Mage_Q97L', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328', + 'Pputida_TALE__HGL_Pputida_144', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58', + 'CDPH-SAL_Salmonella_Typhi_MDL-152', + 'Pputida_TALE__HGL_Pputida_130', + 'JM-Metabolic__GN0_2277', + 'CDPH-SAL_Salmonella_Typhi_MDL-161', + 'stALE_E_coli_A5_F42_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63', + 'P21_E_coli_ELI368', 'stALE_E_coli_A14_F133_I1_R1', + 'Pputida_TALE__HGL_Pputida_140', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102', + 'Pputida_PALE__HGL_Pputida_170', + 'JM-Metabolic__GN0_2172', + 'stALE_E_coli_A14_F42_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372', + 'JM-Metabolic__GN02514', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_28_53', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407', + 'Pputida_TALE__HGL_Pputida_141', 'P21_E_coli_ELI369', + 'stALE_E_coli_A18_F130_I1_R1', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103', + 'CDPH-SAL_Salmonella_Typhi_MDL-160', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57', + 'Pputida_TALE__HGL_Pputida_131', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_18_19', + 'CDPH-SAL_Salmonella_Typhi_MDL-153', + 'stALE_E_coli_A13_F121_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_30_7', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330', + 'P21_E_coli_ELI347', 'JM-Metabolic__GN05367', + 'Pputida_PALE__HGL_Pputida_171', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373', + 'P21_E_coli_ELI352', 'P21_E_coli_ELI361', + 'stALE_E_coli_A3_F18_I1_R1', + 'Pputida_PALE__HGL_Pputida_157', + 'Pputida_PALE__HGL_Pputida_164', + 'JM-Metabolic__GN02787', + 'CDPH-SAL_Salmonella_Typhi_MDL-168', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355', + 'Pputida_TALE__HGL_Pputida_139', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_4_14', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421', + 'JM-Metabolic__GN0_2094', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_24_24', + 'JM-Metabolic__GN02590', + 'JBI_KHP_HGL_030_Amitesh_soxR_oxyR', + 'stALE_E_coli_A5_F21_I1_R1', 'JM-Metabolic__GN04306', + 'Pputida_TALE__HGL_Pputida_124', + 'CDPH-SAL_Salmonella_Typhi_MDL-146', + 'Pputida_TALE__HGL_Pputida_117', + 'JM-Metabolic__GN04665', 'JM-Metabolic__GN0_2148', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483', + 'Pputida_PALE__HGL_Pputida_165', + 'Pputida_PALE__HGL_Pputida_156', + 'JM-Metabolic__GN0_2404', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51', + 'JM-Metabolic__GN05109', 'JM-Metabolic__GN02748', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_22_28', + 'stALE_E_coli_A16_F20_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367', + 'JM-Metabolic__GN02501', + 'Pputida_TALE__HGL_Pputida_138', + 'JBI_KHP_HGL_028_Amitesh_soxR', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354', + 'stALE_E_coli_A6_F21_I1_R1', + 'JM-Metabolic__GN0_2005', + 'stALE_E_coli_A16_F134_I1_R1', 'P21_E_coli_ELI353', + 'Pputida_TALE__HGL_Pputida_116', + 'stALE_E_coli_A17_F21_I1_R1', + 'CDPH-SAL_Salmonella_Typhi_MDL-147', + 'JM-Metabolic__GN02766', + 'Pputida_TALE__HGL_Pputida_125', 'JBI_KHP_HGL_021', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420', + 'stALE_E_coli_A11_F119_I1_R1', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_26_27', + 'P21_E_coli_ELI355', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408', + 'stALE_E_coli_A9_F21_I1_R1', 'P21_E_coli_ELI366', + 'JM-Metabolic__GN04488', + 'Pputida_JBEI__HGL_Pputida_109_BP8', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352', + 'stALE_E_coli_A17_F118_I1_R1', + 'JM-Metabolic__GN04682', + 'Pputida_PALE__HGL_Pputida_150', + 'Pputida_JBEI__HGL_Pputida_111_M5', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485', + 'stALE_E_coli_A11_F43_I1_R1', + 'Pputida_PALE__HGL_Pputida_163', + 'JM-Metabolic__GN04094', 'P21_E_coli_ELI348', + 'JM-Metabolic__GN04612', 'stALE_E_coli_A8_F20_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381', + 'JBI_KHP_HGL_027', 'Pputida_TALE__HGL_Pputida_123', + 'JM-Metabolic__GN02529', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353', + 'Pputida_PALE__HGL_Pputida_162', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484', + 'Pputida_PALE__HGL_Pputida_151', 'P21_E_coli_ELI367', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409', + 'stALE_E_coli_A13_F42_I1_R1', 'P21_E_coli_ELI354', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_26_6', + 'JBI_KHP_HGL_026', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_24_52', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_10_28', + 'Pputida_TALE__HGL_Pputida_122', + 'JM-Metabolic__GN0_2215', 'P21_E_coli_ELI349', + 'stALE_E_coli_A12_F43_I1_R1', + 'Pputida_PALE__HGL_Pputida_159', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368', + 'CDPH-SAL_Salmonella_Typhi_MDL-155', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_20_16', + 'CDPH-SAL_Salmonella_Typhi_MDL-166', + 'Pputida_TALE__HGL_Pputida_137', + 'stALE_E_coli_A10_F21_I1_R1', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401', + 'CDPH-SAL_Salmonella_Typhi_MDL-148', + 'Pputida_TALE__HGL_Pputida_119', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_10_13', + 'JM-Metabolic__GN02769', + 'JBI_KHP_HGL_031_Amitesh_rpoS', + 'JM-Metabolic__GN05128', 'JM-Metabolic__GN0_2290', + 'JM-Metabolic__GN04540', 'JM-Metabolic__GN0_2175', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388', + 'stALE_E_coli_A1_F21_I1_R1', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24', + 'RMA_KHP_rpoS_Mage_Q97N', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521', + 'Pputida_PALE__HGL_Pputida_158', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394', + 'JM-Metabolic__GN0_2169', + 'Pputida_TALE__HGL_Pputida_136', + 'CDPH-SAL_Salmonella_Typhi_MDL-167', + 'CDPH-SAL_Salmonella_Typhi_MDL-154', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369', + 'stALE_E_coli_A2_F21_I1_R1', + 'stALE_E_coli_A4_F21_I1_R2', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_10_51', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374', + 'Pputida_TALE__HGL_Pputida_118', + 'CDPH-SAL_Salmonella_Typhi_MDL-149', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389', + 'Pputida_PALE__HGL_Pputida_145', + 'Pputida_PALE__HGL_Pputida_176', 'P21_E_coli_ELI344', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419', + 'Pputida_PALE__HGL_Pputida_172', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_22_52', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_18_59', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24', + 'Pputida_TALE__HGL_Pputida_142', 'P21_E_coli_ELI359', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46', + 'JM-Metabolic__GN0_2354', + 'CDPH-SAL_Salmonella_Typhi_MDL-150', + 'stALE_E_coli_A10_F43_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624', + 'CDPH-SAL_Salmonella_Typhi_MDL-163', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474', + 'Pputida_TALE__HGL_Pputida_132', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516', + 'JM-Metabolic__GN0_2317', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390', + 'JM-Metabolic__GN02446', + 'Pputida_PALE__HGL_Pputida_173', + 'JM-Metabolic__GN04014', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_18_35', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_28_13', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418', + 'P21_E_coli_ELI345', 'JM-Metabolic__GN02567', + 'Pputida_TALE__HGL_Pputida_133', + 'CDPH-SAL_Salmonella_Typhi_MDL-162', + 'stALE_E_coli_A12_F136_I1_R1', + 'CDPH-SAL_Salmonella_Typhi_MDL-151', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62', + 'Pputida_JBEI__HGL_Pputida_107_BP6', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517', + 'P21_E_coli_ELI358', 'Pputida_TALE__HGL_Pputida_143', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101', + 'Pputida_TALE__HGL_Pputida_126', + 'Pputida_TALE__HGL_Pputida_115', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_28_28', + 'CDPH-SAL_Salmonella_Typhi_MDL-144', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22', + 'JM-Metabolic__GN04255', + 'Pputida_PALE__HGL_Pputida_148', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384', + 'stALE_E_coli_A8_F42_I1_R1', 'JBI_KHP_HGL_022', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_4_48', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399', + 'stALE_E_coli_A10_F131_I1_R1', + 'Pputida_PALE__HGL_Pputida_155', + 'Pputida_PALE__HGL_Pputida_166', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_32_20', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_30_22', + 'CDPH-SAL_Salmonella_Typhi_MDL-159', + 'JM-Metabolic__GN03409', 'JM-Metabolic__GN02531', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327', + 'P21_E_coli_ELI350', 'JM-Metabolic__GN0_2393', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64', + 'JBI_KHP_HGL_029_Amitesh_oxyR', 'P21_E_coli_ELI363', + 'stALE_E_coli_A11_F21_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044', + 'stALE_E_coli_A18_F39_I1_R1', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51', + 'CDPH-SAL_Salmonella_Typhi_MDL-145', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378', + 'Pputida_TALE__HGL_Pputida_114', + 'Pputida_TALE__HGL_Pputida_127', 'JBI_KHP_HGL_023', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_32_6', + 'stALE_E_coli_A12_F21_I1_R1', + 'Pputida_PALE__HGL_Pputida_149', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385', + 'Pputida_JBEI__HGL_Pputida_108_BP7', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23', + 'P21_E_coli_ELI362', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_30_60', + 'P21_E_coli_ELI351', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326', + 'JM-Metabolic__GN0_2165', + 'Pputida_PALE__HGL_Pputida_167', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_24_9', + 'stALE_E_coli_A13_F20_I1_R1', + 'JM-Metabolic__GN04563', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398', + 'Pputida_PALE__HGL_Pputida_154', + 'CDPH-SAL_Salmonella_Typhi_MDL-158', + 'JM-Metabolic__GN0_2007', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356', + 'P21_E_coli_ELI352', 'P21_E_coli_ELI361', + 'stALE_E_coli_A3_F18_I1_R1', + 'CDPH-SAL_Salmonella_Typhi_MDL-168', + 'Pputida_TALE__HGL_Pputida_139', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_4_14', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25', + 'Pputida_PALE__HGL_Pputida_157', + 'Pputida_PALE__HGL_Pputida_164', + 'JM-Metabolic__GN02787', 'JM-Metabolic__GN0_2094', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_24_24', + 'JM-Metabolic__GN02590', + 'JBI_KHP_HGL_030_Amitesh_soxR_oxyR', + 'stALE_E_coli_A5_F21_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386', + 'JM-Metabolic__GN0_2148', 'JM-Metabolic__GN04306', + 'Pputida_TALE__HGL_Pputida_124', + 'CDPH-SAL_Salmonella_Typhi_MDL-146', + 'JM-Metabolic__GN04665', + 'Pputida_TALE__HGL_Pputida_117', + 'JM-Metabolic__GN02748', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_22_28', + 'stALE_E_coli_A16_F20_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354', + 'stALE_E_coli_A6_F21_I1_R1', + 'Pputida_TALE__HGL_Pputida_138', + 'JM-Metabolic__GN02501', + 'JBI_KHP_HGL_028_Amitesh_soxR', + 'JM-Metabolic__GN0_2005', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483', + 'Pputida_PALE__HGL_Pputida_165', + 'JM-Metabolic__GN0_2404', + 'Pputida_PALE__HGL_Pputida_156', + 'JM-Metabolic__GN05109', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51', + 'P21_E_coli_ELI353', 'stALE_E_coli_A16_F134_I1_R1', + 'JBI_KHP_HGL_021', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387', + 'stALE_E_coli_A17_F21_I1_R1', + 'Pputida_TALE__HGL_Pputida_116', + 'CDPH-SAL_Salmonella_Typhi_MDL-147', + 'JM-Metabolic__GN02766', + 'Pputida_TALE__HGL_Pputida_125', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_26_27', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420', + 'stALE_E_coli_A11_F119_I1_R1', + 'stALE_E_coli_A5_F42_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50', + 'CDPH-SAL_Salmonella_Typhi_MDL-152', + 'JM-Metabolic__GN0_2277', + 'Pputida_TALE__HGL_Pputida_130', + 'CDPH-SAL_Salmonella_Typhi_MDL-161', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102', + 'P21_E_coli_ELI368', 'stALE_E_coli_A14_F133_I1_R1', + 'Pputida_TALE__HGL_Pputida_140', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372', + 'JM-Metabolic__GN02514', 'JM-Metabolic__GN0_2172', + 'Pputida_PALE__HGL_Pputida_170', + 'stALE_E_coli_A14_F42_I1_R1', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_28_53', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407', + 'Pputida_TALE__HGL_Pputida_141', 'P21_E_coli_ELI369', + 'stALE_E_coli_A18_F130_I1_R1', + 'stALE_E_coli_A13_F121_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393', + 'CDPH-SAL_Salmonella_Typhi_MDL-160', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57', + 'Pputida_TALE__HGL_Pputida_131', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_18_19', + 'CDPH-SAL_Salmonella_Typhi_MDL-153', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330', + 'P21_E_coli_ELI347', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_30_7', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373', + 'JM-Metabolic__GN05367', + 'Pputida_PALE__HGL_Pputida_171', + 'stALE_E_coli_A4_F21_I1_R1', + 'JM-Metabolic__GN0_2380', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078', + 'stALE_E_coli_A14_F20_I1_R1', + 'Pputida_PALE__HGL_Pputida_175', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_26_69', + 'JM-Metabolic__GN03252', + 'Pputida_PALE__HGL_Pputida_146', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377', + 'Pputida_TALE__HGL_Pputida_128', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329', + 'stALE_E_coli_A15_F21_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25', + 'JM-Metabolic__GN02657', + 'CDPH-SAL_Salmonella_Typhi_MDL-157', + 'Pputida_TALE__HGL_Pputida_135', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_22_16', + 'CDPH-SAL_Salmonella_Typhi_MDL-164', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55', + 'Pputida_PALE__HGL_Pputida_168', + 'stALE_E_coli_A9_F44_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522', + 'Pputida_PALE__HGL_Pputida_147', + 'Pputida_PALE__HGL_Pputida_174', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_6_35', + 'Pputida_TALE__HGL_Pputida_129', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376', + 'JM-Metabolic__GN0_2099', + 'stALE_E_coli_A3_F40_I1_R1', + 'CDPH-SAL_Salmonella_Typhi_MDL-165', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50', + 'JM-Metabolic__GN0_2009', + 'Pputida_TALE__HGL_Pputida_134', + 'CDPH-SAL_Salmonella_Typhi_MDL-156', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396', + 'stALE_E_coli_A7_F21_I1_R1', + 'Pputida_PALE__HGL_Pputida_169', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402', + 'Pputida_TALE__HGL_Pputida_144', + 'RMA_KHP_rpoS_Mage_Q97L', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727', + 'stALE_E_coli_A15_F42_I1_R1', + 'JM-Metabolic__GN0_2183', + 'Pputida_TALE__HGL_Pputida_121', + 'JM-Metabolic__GN02487', + 'CDPH-SAL_Salmonella_Typhi_MDL-143', + 'Pputida_TALE__HGL_Pputida_112', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383', + 'JM-Metabolic__GN02449', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41', + 'JM-Metabolic__GN0_2337', 'JBI_KHP_HGL_025', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_20_43', + 'JM-Metabolic__GN05002', 'JM-Metabolic__GN03218', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49', + 'JM-Metabolic__GN05377', + 'Pputida_PALE__HGL_Pputida_152', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518', + 'Pputida_PALE__HGL_Pputida_161', + 'stALE_E_coli_A4_F42_I1_R1', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69', + 'JM-Metabolic__GN02424', 'P21_E_coli_ELI357', + 'RMA_KHP_rpoS_Mage_Q97D', 'P21_E_coli_ELI364', + 'JM-Metabolic__GN03132', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_20_71', + 'Pputida_JBEI__HGL_Pputida_110_M2', + 'JM-Metabolic__GN0_2375', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25', + 'stALE_E_coli_A7_F42_I1_R1', + 'Pputida_TALE__HGL_Pputida_113', + 'JM-Metabolic__GN0_2254', 'JM-Metabolic__GN04428', + 'Pputida_TALE__HGL_Pputida_120', 'JBI_KHP_HGL_024', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382', + 'stALE_E_coli_A18_F18_I1_R1', + 'stALE_E_coli_A16_F42_I1_R1', + 'stALE_E_coli_A6_F43_I1_R1', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_32_56', + 'P21_E_coli_ELI365', 'RMA_KHP_rpoS_Mage_Q97E', + 'stALE_E_coli_A15_F117_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486', + 'Pputida_PALE__HGL_Pputida_160', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519', + 'Pputida_PALE__HGL_Pputida_153', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_4_23', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_6_21'] + + self.gerwick_ids = ['7A', 'ISB', '5B', '6A', '8A', '3A', 'GFR', '4A', + '5B', '6A', '8A', 'ISB', '7A', 'GFR', '3A', '4A'] + + self.nyu_ids = ['22_001_710_503_791_00', '22_001_801_552_503_00', + 'AP006367B02', 'AP029018B01', 'AP032412B04', + 'AP032413B04', 'AP046324B02', 'AP046327B02', + 'AP062219B03', 'AP065292B01', 'AP103463B01', + 'AP173299B04', 'AP173301B04', 'AP173305B04', + 'AP223470B01', 'AP298002B02', 'AP309872B03', + 'AP324642B04', 'AP470859B01', 'AP481403B02', + 'AP531397B04', 'AP549678B01', 'AP549681B02', + 'AP568785B04', 'AP568787B02', 'AP581451B02', + 'AP616837B04', 'AP668628B04', 'AP668631B04', + 'AP687591B04', 'AP696363B02', 'AP732307B04', + 'AP744361A02', 'AP745799A04', 'AP771472A04', + 'AP780167B02', 'AP787247B04', 'AP795068B04', + 'AP891020A04', 'AP905750A02', 'AP911328B01', + 'AP953594A02', 'AP959450A03', 'AP967057A04', 'C14', + 'C18', 'C20', 'C3', 'C5', 'C6', 'C9', 'EP001624B01', + 'EP001625B01', 'EP012991B03', 'EP023801B04', + 'EP023808B02', 'EP032410B02', 'EP032412B02', + 'EP043583B01', 'EP054632B01', 'EP061002B01', + 'EP073160B01', 'EP073209B02', 'EP073216B01', + 'EP087938B02', 'EP090129B04', 'EP112567B02', + 'EP121011B01', 'EP121013B01', 'EP128904B02', + 'EP128910B01', 'EP159692B04', 'EP159695B01', + 'EP163771B01', 'EP182060B03', 'EP182065B04', + 'EP182243B02', 'EP182346B04', 'EP184255B04', + 'EP190307B01', 'EP202095B04', 'EP202452B01', + 'EP207036B01', 'EP207041B01', 'EP207042B04', + 'EP212214B01', 'EP216516B04', 'EP230245B01', + 'EP238034B01', 'EP244360B01', 'EP244366B01', + 'EP256644B01', 'EP256645B01', 'EP260543B04', + 'EP260544B04', 'EP273332B04', 'EP282107B01', + 'EP282108B01', 'EP282276B04', 'EP291979B04', + 'EP291980B04', 'EP305735B04', 'EP316863B03', + 'EP320438B01', 'EP333541B04', 'EP337325B04', + 'EP337425B01', 'EP339053B02', 'EP339057B02', + 'EP339059B02', 'EP339061B02', 'EP372981B04', + 'EP379938B01', 'EP385379B01', 'EP385384B01', + 'EP385387B01', 'EP393712B02', 'EP393714B01', + 'EP393715B01', 'EP393717B01', 'EP393718B01', + 'EP400447B04', 'EP400448B04', 'EP410041B01', + 'EP410042B01', 'EP410046B01', 'EP422407B01', + 'EP431562B04', 'EP431570B01', 'EP431575B01', + 'EP446602B01', 'EP446604B03', 'EP446610B02', + 'EP447926B04', 'EP447927B04', 'EP447928B04', + 'EP447929B04', 'EP447940B04', 'EP447975B02', + 'EP448041B04', 'EP451428B04', 'EP455757B04', + 'EP455759B04', 'EP455763B04', 'EP479266B04', + 'EP479270B03', 'EP479794B02', 'EP479894B04', + 'EP483291B04', 'EP484973B04', 'EP487995B04', + 'EP504030B04', 'EP529635B02', 'EP533388B01', + 'EP533389B03', 'EP533426B03', 'EP533429B04', + 'EP542577B04', 'EP542578B04', 'EP554501B04', + 'EP554506B04', 'EP554513B02', 'EP554515B04', + 'EP554518B04', 'EP573296B01', 'EP573310B01', + 'EP573313B01', 'EP584756B04', 'EP587475B04', + 'EP587476B04', 'EP587477B04', 'EP587478B04', + 'EP606652B04', 'EP606656B03', 'EP606662B04', + 'EP606663B04', 'EP617440B01', 'EP617441B01', + 'EP617442B01', 'EP617443B01', 'EP636802A01', + 'EP649418A02', 'EP649623A01', 'EP649653A04', + 'EP649737A03', 'EP656055A04', 'EP657260A01', + 'EP657385A04', 'EP657386A01', 'EP667743A04', + 'EP675042B01', 'EP675044A01', 'EP675075A04', + 'EP683835A01', 'EP685640B01', 'EP702221B04', + 'EP718687A04', 'EP718688A01', 'EP721390A04', + 'EP724905B01', 'EP727972A04', 'EP729433A02', + 'EP729434A01', 'EP738468A01', 'EP738469A01', + 'EP749735A07', 'EP759450A04', 'EP768164A02', + 'EP768748A04', 'EP772143A02', 'EP772145A02', + 'EP784608A01', 'EP786631A04', 'EP790019A01', + 'EP790020A02', 'EP790021A04', 'EP790023A01', + 'EP805337A01', 'EP808104A01', 'EP808105A01', + 'EP808106A01', 'EP808109A01', 'EP808110A04', + 'EP808111A03', 'EP808112A04', 'EP843906A04', + 'EP846485A01', 'EP868682A01', 'EP872341A01', + 'EP876243A04', 'EP882752A01', 'EP886422A01', + 'EP890157A02', 'EP890158A02', 'EP899038A04', + 'EP905975A04', 'EP915769A04', 'EP921593A04', + 'EP921594A04', 'EP927458A04', 'EP927459A04', + 'EP927461A04', 'EP927462A02', 'EP929277A02', + 'EP940013A01', 'EP944059A02', 'EP970001A01', + 'EP970005A01', 'EP980752B04', 'EP981129A02', + 'EP987683A01', 'EP996831B04', 'LP127767A01', + 'LP127890A01', 'LP128476A01', 'LP128479A01', + 'LP128538A01', 'LP128539A01', 'LP128540A01', + 'LP128541A01', 'LP128543A01', 'LP154981A01', + 'LP154986A01', 'LP166715A01', 'LP169879A01', + 'LP191039A01', 'LP196272A01', 'SP205732A02', + 'SP205754A01', 'SP229387A04', 'SP230380A02', + 'SP230381A01', 'SP230382A04', 'SP231628A02', + 'SP231629A02', 'SP231630A02', 'SP231631A02', + 'SP232077A04', 'SP232079A01', 'SP232114A04', + 'SP232270A02', 'SP232309A01', 'SP232310A04', + 'SP232311A04', 'SP235186A04', 'SP235189A01', + 'SP246941A01', 'SP247340A04', 'SP257517A04', + 'SP257519A04', 'SP280481A02', 'SP284095A03', + 'SP284096A02', 'SP317293A02', 'SP317297A02', + 'SP331134A04', 'SP335002A04', 'SP353893A02', + 'SP365864A04', 'SP388683A02', 'SP399724A04', + 'SP404403A02', 'SP404405A02', 'SP404409A02', + 'SP404412A02', 'SP408629A01', 'SP410793A01', + 'SP410796A02', 'SP415021A02', 'SP415023A02', + 'SP415025A01', 'SP415030A01', 'SP416130A04', + 'SP453872A01', 'SP464350A04', 'SP464352A03', + 'SP471496A04', 'SP478193A02', 'SP490298A02', + 'SP491897A02', 'SP491898A02', 'SP491900A02', + 'SP491907A02', 'SP503615A02', 'SP506933A04', + 'SP511289A02', 'SP511294A04', 'SP515443A04', + 'SP515763A04', 'SP531696A04', 'SP561451A04', + 'SP573823A04', 'SP573824A04', 'SP573843A04', + 'SP573849A04', 'SP573859A04', 'SP573860A01', + 'SP577399A02', 'SP584547A02', 'SP584551A08', + 'SP612495A04', 'SP612496A01', 'SP631994A04', + 'SP640978A02', 'SP641029A02', 'SP645141A03', + 'SP681591A04', 'SP683466A02', 'SP704319A04', + 'SP754514A04', 'ep256643b01', 'lp127896a01'] + + # the entire list of sample-ids found w/in good-sample-sheet.csv + self.sample_ids = self.feist_ids + self.gerwick_ids + self.nyu_ids + package_root = abspath(join(dirname(__file__), '..')) + # this base path is used extensively throughout the tests. + self.base_path = partial(join, package_root, 'tests', 'data') + self.good_output_path = self.base_path('output_dir') + self.sample_sheet_path = self.base_path('good-sample-sheet.csv') + self.sample_sheet_w_context_path = self.base_path( + 'good-sample-sheet_w_context.csv') + self.sheet_w_repl_path = self.base_path('good_sheet_w_replicates.csv') + self.good_input_path = self.base_path('input_dir') + + # self.good_input_path doesn't need to have anything in it for the + # purposes of testing, but it does need to exist or else the object + # will raise an Error. + makedirs(self.good_input_path, exist_ok=True) + + # because we can't run bcl2fastq/bcl-convert in a unit-test + # environment, we need to simulate the file/directory structure of + # the output in order to test the audit() method. ConvertJob assumes + # the location of the output files to be under the supplied output + # path/ConvertJob. Hence, our faked_output_path will follow the same + # convention. + faked_output_path = join(self.good_output_path, 'ConvertJob') + + # mimic the Data/Fastq/ hierarchy. + fastq_base = join(faked_output_path, 'Data', 'Fastq') + makedirs(join(fastq_base, 'Feist_11661'), exist_ok=True) + makedirs(join(fastq_base, 'Gerwick_6123'), exist_ok=True) + makedirs(join(fastq_base, 'NYU_BMS_Melanoma_13059'), exist_ok=True) + + # generate filenames and paths for the dummy fastq files. + file_names = [join(fastq_base, + 'Feist_11661', + '%s_R1.fastq.gz' % x) for x in self.feist_ids] + file_names += [join(fastq_base, + 'Feist_11661', + '%s_R2.fastq.gz' % x) for x in self.feist_ids] + file_names += [join(fastq_base, + 'Gerwick_6123', + '%s_R1.fastq.gz' % x) for x in self.gerwick_ids] + file_names += [join(fastq_base, + 'Gerwick_6123', + '%s_R2.fastq.gz' % x) for x in self.gerwick_ids] + file_names += [join(fastq_base, + 'NYU_BMS_Melanoma_13059', + '%s_R1.fastq.gz' % x) for + x in self.nyu_ids] + file_names += [join(fastq_base, + 'NYU_BMS_Melanoma_13059', + '%s_R2.fastq.gz' % x) for + x in self.nyu_ids] + + # create the dummy fastq files. + for line in file_names: + # create a fake forward-read file. + with open(line, 'w') as f2: + f2.write("This is a file.") + # create a fake reverse-read file. + line = line.replace('_R1.fastq', '_R2.fastq') + with open(line, 'w') as f2: + f2.write("This is a file.") + + # convert to Log directory and file created by bcl-convert. + # this is separate from the standard 'log' directory created + # by all jobs. + self.convert_log_path = join(faked_output_path, 'Logs') + makedirs(self.convert_log_path, exist_ok=True) + self.convert_log_path = join(self.convert_log_path, 'Errors.log') + with open(self.convert_log_path, 'w') as f: + f.write("2024-01-01T12:12:12Z thread 99999 ERROR: Sample Sheet " + "Error: in OverrideCycles: Read # 2 specified does not " + "add up to the 8 bases expected from RunInfo.xml\n") + + def tearDown(self): + rmtree(self.good_input_path) + rmtree(self.good_output_path) + + def test_creation(self): + run_dir = self.base_path('211021_A00000_0000_SAMPLE') + inv_input_directory = self.base_path('inv_input_directory') + qiita_id = 'abcdabcdabcdabcdabcdabcdabcdabcd' + + # ConvertJob should assert due to invalid_input_directory. + with self.assertRaises(PipelineError) as e: + ConvertJob(inv_input_directory, self.good_output_path, + self.sample_sheet_path, 'qiita', 1, 16, 1440, '10gb', + 'tests/bin/bcl-convert', [], qiita_id) + + self.assertEqual(str(e.exception), + "directory_path '%s' does not exist." % + self.base_path('inv_input_directory')) + + job = ConvertJob(run_dir, self.good_output_path, + self.sample_sheet_path, 'qiita', 1, 16, 1440, '10gb', + 'tests/bin/bcl-convert', [], qiita_id) + + job._generate_job_script() + + with open(join(self.good_output_path, 'ConvertJob', + 'ConvertJob.sh')) as f: + obs = ''.join(f.readlines()) + + # ssp should be just the value of the self.path() partial function by + # itself. For readability, SCRIPT_EXP addresses the '/' separator. + # Hence, the trailing '/' is redundant and should be removed here. + self.assertEqual(obs, + SCRIPT_EXP.format(ssp=self.base_path('').rstrip('/'), + gop=self.good_output_path, + run_dir=run_dir)) + + def test_error_msg_from_logs(self): + run_dir = self.base_path('211021_A00000_0000_SAMPLE') + qiita_id = 'abcdabcdabcdabcdabcdabcdabcdabcd' + + job = ConvertJob(run_dir, self.good_output_path, + self.sample_sheet_path, 'qiita', 1, 16, 1440, '10gb', + 'tests/bin/bcl-convert', [], qiita_id) + + # an internal method to force submit_job() to raise a JobFailedError + # instead of submitting the job w/sbatch and waiting for a failed + # job w/squeue. + self.assertTrue(job._toggle_force_job_fail()) + + error_msg = ("This job died.\n2024-01-01T12:12:12Z thread 99999 ERROR:" + " Sample Sheet Error: in OverrideCycles: Read # 2 " + "specified does not add up to the 8 bases expected from" + " RunInfo.xml") + + with self.assertRaisesRegex(JobFailedError, error_msg): + job.run() + + def test_audit(self): + # the faked output should be in self.good_output_path/ConvertJob. + # ConvertJob already takes into account 'ConvertJob' and so the + # correct path to the faked output is self.good_output_path, rather + # than faked_output_path. + job = ConvertJob(self.good_input_path, self.good_output_path, + self.sample_sheet_path, 'qiita', 1, 16, 1440, '10gb', + 'tests/bin/bcl-convert', [], 'some_qiita_id') + + obs = job.audit(self.sample_ids) + # there shouldn't be any missing samples. + self.assertEqual(obs, []) + + # these fake sample-ids should be returned by audit() as missing. + obs = job.audit(self.sample_ids + ['not-a-sample', 'BLANK1']) + self.assertListEqual(obs, ['BLANK1', 'not-a-sample']) + + def test_parse_sample_sheet(self): + js_path = self.base_path('sample-convertjob.sh') + obs = ConvertJob.parse_job_script(js_path) + + exp = { + 'run_directory': ('/sequencing/igm_runs/210820_A00953_0380_' + 'BHJ53TDSX2'), + 'sample_sheet_path': ('/qmounts/qiita_data/working_dir/' + '3f6b1fe3-1f5d-4fec-af47-31a2e35fef91/' + '2024-02-08_U19_Wisconsin_15445_reruns' + '_NovaSeq_nonNA.csv') + } + + self.assertDictEqual(obs, exp) + + def test_copy_sequences_bad_parameters(self): + run_dir = self.base_path('211021_A00000_0000_SAMPLE') + qiita_id = 'abcdabcdabcdabcdabcdabcdabcdabcd' + + job = ConvertJob(run_dir, self.good_output_path, + self.sample_sheet_path, 'qiita', 1, 16, 1440, '10gb', + 'tests/bin/bcl-convert', [], qiita_id) + + # instead of calling run() and faking an entire ConvertJob run, + # manually call _get_sample_sheet_info(), which is typically called + # once a job has completed, to gather the metadata needed to properly + # run copy_sequences() method. + + job._get_sample_sheet_info() + + sample_name = 'CDPH-SAL.Salmonella.Typhi.MDL-154' + source_project = 'Feist_11661' + other_projects = ['NYU_BMS_Melanoma_13059', 'Gerwick_6123'] + dest_project = other_projects[0] + not_source_project = other_projects[1] + not_a_sample_name = 'NOT_A_SAMPLE_NAME' + not_a_project = 'NOT_A_PROJECT' + + err_msg = ("'NOT_A_SAMPLE_NAME' did not match any 'sample_name' values" + " in project 'Feist_11661'.") + with self.assertRaisesRegex(ValueError, err_msg): + job.copy_sequences(not_a_sample_name, + source_project, + dest_project) + + err_msg = ("'CDPH-SAL.Salmonella.Typhi.MDL-154' did not match any " + "'sample_name' values in project 'Gerwick_6123'.") + with self.assertRaisesRegex(ValueError, err_msg): + job.copy_sequences(sample_name, + not_source_project, + dest_project) + + with self.assertRaisesRegex(ValueError, "'NOT_A_PROJECT' is not " + "defined in sample sheet"): + job.copy_sequences(sample_name, + not_a_project, + dest_project) + + with self.assertRaisesRegex(ValueError, "'NOT_A_PROJECT' is not " + "defined in sample sheet"): + job.copy_sequences(sample_name, + source_project, + not_a_project) + + with self.assertRaisesRegex(ValueError, "source 'Feist_11661' and " + "destination 'Feist_11661' " + "projects are the same"): + job.copy_sequences(sample_name, + source_project, + source_project) + + def test_copy_sequences_success(self): + run_dir = self.base_path('211021_A00000_0000_SAMPLE') + qiita_id = 'abcdabcdabcdabcdabcdabcdabcdabcd' + + job = ConvertJob(run_dir, self.good_output_path, + self.sample_sheet_path, 'qiita', 1, 16, 1440, '10gb', + 'tests/bin/bcl-convert', [], qiita_id) + + sample_name = 'CDPH-SAL.Salmonella.Typhi.MDL-154' + source_project = 'Feist_11661' + dest_project = 'NYU_BMS_Melanoma_13059' + projects = ['NYU_BMS_Melanoma_13059', 'Gerwick_6123', 'Feist_11661'] + + # since we can't perform a real run, let's manually create a fake + # fastq file and project directories in the 'output_dir' directory and + # manually call job._get_sample_sheet_info() to obtain all of the + # metadata needed to copy a sequence from one project into another. + + for some_project in projects: + # fake the fastq file directories in ConvertJob, one for each + # project defined in the sample-sheet. + makedirs(join(self.good_output_path, 'ConvertJob', some_project)) + + # fake a fastq file in the 'Feist_11661' directory for the purposes of + # copying it into the 'NYU_BMS_Melanoma_13059' project. + with open(join(self.good_output_path, 'ConvertJob', source_project, + 'CDPH-SAL_Salmonella_Typhi_MDL-154_S1_L001_R1_001.' + 'fastq.gz'), 'w') as f: + f.write("Hello World!\n") + + # manually call the functionality that reads the sample-sheet and + # attempts to associate samples with the fastq files generated by + # bcl-convert. + job._get_sample_sheet_info() + + # copy all fastq files associated w/ + # 'CDPH-SAL.Salmonella.Typhi.MDL-154' from 'Feist_11661' to + # 'NYU_BMS_Melanoma_13059'. 'Gerwick_6123' should remain empty; the + # code shouldn't copy anything into that project. + job.copy_sequences(sample_name, source_project, dest_project) + + sample_info = job.info[source_project]['samples'][sample_name] + + # get the path for the source fastq file we created above and swap out + # the project-level directory names to confirm and deny the existence + # of the fastq file in other locations. + source_file = sample_info['matching_files'][0] + + # file should have been copied here. + dst_file = source_file.replace('Feist_11661', 'NYU_BMS_Melanoma_13059') + self.assertTrue(exists(dst_file)) + + # file should not have been copied here. + dst_file = source_file.replace('Feist_11661', 'Gerwick_6123') + self.assertFalse(exists(dst_file)) + + def test_copy_sequences_success_w_replicates(self): + # perform a similar test to the one above, but w/replicate samples. + + run_dir = self.base_path('211021_A00000_0000_SAMPLE') + qiita_id = 'abcdabcdabcdabcdabcdabcdabcdabcd' + + job = ConvertJob(run_dir, self.good_output_path, + self.sheet_w_repl_path, 'qiita', 1, 16, 1440, '10gb', + 'tests/bin/bcl-convert', [], qiita_id) + + sample_name = 'RMA.KHP.rpoS.Mage.Q97D' + source_project = 'Feist_11661' + dest_project = 'NYU_BMS_Melanoma_13059' + projects = ['NYU_BMS_Melanoma_13059', 'Feist_11661'] + + for some_project in projects: + makedirs( + join(self.good_output_path, 'ConvertJob', some_project)) + + # fake a fastq file in the 'Feist_11661' directory for the purposes of + # copying it into the 'NYU_BMS_Melanoma_13059' project. + + # instead of faking just a single fastq file, fake an R1, R2 and I1 + # fastq file for all three replicates of 'RMA.KHP.rpoS.Mage.Q97D'. + + fastqs = ['RMA_KHP_rpoS_Mage_Q97D_A5_S1_L001_R1_001.fastq.gz', + 'RMA_KHP_rpoS_Mage_Q97D_A5_S1_L001_I1_001.fastq.gz', + 'RMA_KHP_rpoS_Mage_Q97D_A5_S1_L001_R2_001.fastq.gz', + + 'RMA_KHP_rpoS_Mage_Q97D_A6_S1_L001_R1_001.fastq.gz', + 'RMA_KHP_rpoS_Mage_Q97D_A6_S1_L001_I1_001.fastq.gz', + 'RMA_KHP_rpoS_Mage_Q97D_A6_S1_L001_R2_001.fastq.gz', + + 'RMA_KHP_rpoS_Mage_Q97D_B6_S1_L001_R1_001.fastq.gz', + 'RMA_KHP_rpoS_Mage_Q97D_B6_S1_L001_I1_001.fastq.gz', + 'RMA_KHP_rpoS_Mage_Q97D_B6_S1_L001_R2_001.fastq.gz'] + + for fastq in fastqs: + with open(join(self.good_output_path, 'ConvertJob', source_project, + fastq), 'w') as f: + f.write("Hello World!\n") + + job._get_sample_sheet_info() + + job.copy_sequences(sample_name, source_project, dest_project) + + files_to_match = [] + + for smpl in job.info[source_project]['samples']: + smpl_info = job.info[source_project]['samples'][smpl] + if smpl_info['orig_name'] == 'RMA.KHP.rpoS.Mage.Q97D': + files_to_match += smpl_info['matching_files'] + + files_to_match = [fp.replace('Feist_11661', + 'NYU_BMS_Melanoma_13059') + for fp in files_to_match] + + for dst_file in files_to_match: + self.assertTrue(exists(dst_file)) + + def test_copy_controls_between_projects(self): + # There is a lot of heavy-weight set-up for this test, so I am not + # testing copying more than one control. However, this is itself a + # good check: there are a lot of samples named "BLANK." in the + # sample sheet, but only ONE (which is NOT named "BLANK.") is + # listed in the SampleContext section. The fact that the code + # copies just that one shows it is reading what it should. + + run_dir = self.base_path('211021_A00000_0000_SAMPLE') + qiita_id = 'abcdabcdabcdabcdabcdabcdabcdabcd' + + job = ConvertJob( + run_dir, self.good_output_path, self.sample_sheet_w_context_path, + 'qiita', 1, 16, 1440, '10gb', 'tests/bin/bcl-convert', [], + qiita_id) + + sample_name = 'CDPH-SAL.Salmonella.Typhi.MDL-154' + source_project = 'Feist_11661' + projects = ['NYU_BMS_Melanoma_13059', 'Gerwick_6123', 'Feist_11661'] + + # since we can't perform a real run, let's manually create a fake + # fastq file and project directories in the 'output_dir' directory and + # manually call job._get_sample_sheet_info() to obtain all of the + # metadata needed to copy a sequence from one project into another. + + for some_project in projects: + # fake the fastq file directories in ConvertJob, one for each + # project defined in the sample-sheet. + makedirs(join(self.good_output_path, 'ConvertJob', some_project), + exist_ok=True) + + # fake a fastq file in the 'Feist_11661' directory for the purposes of + # copying it into the 'NYU_BMS_Melanoma_13059' project. + with open(join(self.good_output_path, 'ConvertJob', source_project, + 'CDPH-SAL_Salmonella_Typhi_MDL-154_S1_L001_R1_001.' + 'fastq.gz'), 'w') as f: + f.write("Hello World!\n") + + job.copy_controls_between_projects() + + sample_info = job.info[source_project]['samples'][sample_name] + + # get the path for the source fastq file we created above and swap out + # the project-level directory names to confirm and deny the existence + # of the fastq file in other locations. + source_file = sample_info['matching_files'][0] + + # file should have been copied here. + dst_file = source_file.replace('Feist_11661', 'NYU_BMS_Melanoma_13059') + self.assertTrue(exists(dst_file)) + + # file should not have been copied here. + dst_file = source_file.replace('Feist_11661', 'Gerwick_6123') + self.assertFalse(exists(dst_file)) + + +SCRIPT_EXP = ''.join([ + '#!/bin/bash\n', + '#SBATCH --job-name abcdabcdabcdabcdabcdabcdabcdabcd_ConvertJob\n', + '#SBATCH -p qiita\n', + '#SBATCH -N 1\n', + '#SBATCH -n 16\n', + '#SBATCH --time 1440\n', + '#SBATCH --mail-type=ALL\n', + '#SBATCH --mail-user qiita.help@gmail.com\n', + '#SBATCH --mem-per-cpu 10gb\n', + 'set -x\n', + 'date\n', + 'hostname\n', + 'cd {run_dir}\n', + 'tests/bin/bcl-convert --sample-sheet "{ssp}/good-sample-sheet.csv" ' + '--output-directory {gop}/ConvertJob ' + '--bcl-input-directory . ' + '--bcl-num-decompression-threads 16 --bcl-num-conversion-threads 16 ' + '--bcl-num-compression-threads 16 --bcl-num-parallel-tiles 16 ' + '--bcl-sampleproject-subdirectories true --force\n']) + + +if __name__ == '__main__': + unittest.main() diff --git a/tests/test_FastQCJob.py b/tests/test_FastQCJob.py new file mode 100644 index 00000000..8e8e9a44 --- /dev/null +++ b/tests/test_FastQCJob.py @@ -0,0 +1,1185 @@ +import unittest +from os.path import join, exists, isfile +from functools import partial +from sequence_processing_pipeline.FastQCJob import FastQCJob +from sequence_processing_pipeline.PipelineError import (PipelineError, + JobFailedError) +from os import makedirs, listdir, mkdir +from shutil import rmtree, move +from json import load + + +class TestFastQCJob(unittest.TestCase): + def setUp(self): + self.maxDiff = None + package_root = '' + self.path = partial(join, package_root, 'tests', 'data') + self.qiita_job_id = 'abcdabcdabcdabcdabcdabcdabcdabcd' + self.output_path = self.path('output_dir2') + self.fastqc_log_path = join(self.output_path, 'logs') + self.raw_fastq_files_path = ('tests/data' + '/211021_A00000_0000_SAMPLE/Data/Fastq/p' + 'roject1') + self.processed_fastq_files_path = ('tests' + '/data/211021_A00000_0000_SAMPLE/sa' + 'mple-sequence-directory') + self.config_yml = join(package_root, 'multiqc-bclconvert-config.yaml') + self.qc_root_path = join(self.output_path, 'QCJob') + makedirs(self.qc_root_path, exist_ok=True) + + self.feist_ids = ['JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69', + 'JM-Metabolic__GN0_2148', 'JM-Metabolic__GN0_2183', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400', + 'CDPH-SAL_Salmonella_Typhi_MDL-144', + 'P21_E_coli_ELI361', 'JBI_KHP_HGL_023', + 'Pputida_PALE__HGL_Pputida_158', + 'CDPH-SAL_Salmonella_Typhi_MDL-166', + 'CDPH-SAL_Salmonella_Typhi_MDL-147', + 'JM-Metabolic__GN03252', + 'stALE_E_coli_A11_F43_I1_R1', + 'P21_E_coli_ELI355', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50', + 'stALE_E_coli_A14_F42_I1_R1', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_10_51', + 'JM-Metabolic__GN0_2099', 'JM-Metabolic__GN02657', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22', + 'stALE_E_coli_A1_F21_I1_R1', + 'JM-Metabolic__GN0_2005', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421', + 'Pputida_TALE__HGL_Pputida_129', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_10_28', + 'Pputida_TALE__HGL_Pputida_113', + 'JM-Metabolic__GN02487', 'P21_E_coli_ELI348', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_26_27', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385', + 'stALE_E_coli_A10_F43_I1_R1', + 'stALE_E_coli_A11_F119_I1_R1', + 'JM-Metabolic__GN03132', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381', + 'Pputida_TALE__HGL_Pputida_131', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044', + 'Pputida_TALE__HGL_Pputida_122', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419', + 'Pputida_TALE__HGL_Pputida_114', 'P21_E_coli_ELI366', + 'Pputida_TALE__HGL_Pputida_140', 'JBI_KHP_HGL_026', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_6_21', + 'stALE_E_coli_A9_F21_I1_R1', 'P21_E_coli_ELI359', + 'JM-Metabolic__GN04306', + 'Pputida_JBEI__HGL_Pputida_108_BP7', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_20_71', + 'P21_E_coli_ELI345', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_20_43', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_18_59', + 'stALE_E_coli_A12_F136_I1_R1', + 'JM-Metabolic__GN04540', + 'Pputida_PALE__HGL_Pputida_153', + 'CDPH-SAL_Salmonella_Typhi_MDL-156', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36', + 'RMA_KHP_rpoS_Mage_Q97L', + 'stALE_E_coli_A13_F42_I1_R1', + 'JM-Metabolic__GN02766', + 'stALE_E_coli_A7_F42_I1_R1', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_22_28', + 'Pputida_TALE__HGL_Pputida_144', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520', + 'Pputida_TALE__HGL_Pputida_117', + 'stALE_E_coli_A5_F21_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375', + 'stALE_E_coli_A4_F42_I1_R1', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_22_16', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61', + 'Pputida_TALE__HGL_Pputida_116', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353', + 'JM-Metabolic__GN02769', 'JM-Metabolic__GN04488', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403', + 'Pputida_PALE__HGL_Pputida_149', + 'JM-Metabolic__GN0_2290', 'JM-Metabolic__GN02787', + 'JM-Metabolic__GN02449', + 'JBI_KHP_HGL_030_Amitesh_soxR_oxyR', + 'Pputida_JBEI__HGL_Pputida_110_M2', + 'JM-Metabolic__GN0_2169', + 'stALE_E_coli_A8_F42_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103', + 'CDPH-SAL_Salmonella_Typhi_MDL-148', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366', + 'Pputida_TALE__HGL_Pputida_125', + 'stALE_E_coli_A11_F21_I1_R1', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25', + 'CDPH-SAL_Salmonella_Typhi_MDL-150', + 'stALE_E_coli_A15_F21_I1_R1', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418', + 'Pputida_TALE__HGL_Pputida_130', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373', + 'CDPH-SAL_Salmonella_Typhi_MDL-162', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_32_56', + 'CDPH-SAL_Salmonella_Typhi_MDL-160', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354', + 'stALE_E_coli_A14_F133_I1_R1', + 'Pputida_PALE__HGL_Pputida_173', + 'JM-Metabolic__GN0_2175', + 'stALE_E_coli_A13_F20_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395', + 'stALE_E_coli_A17_F118_I1_R1', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64', + 'CDPH-SAL_Salmonella_Typhi_MDL-154', + 'Pputida_PALE__HGL_Pputida_156', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_32_6', + 'JM-Metabolic__GN0_2215', + 'Pputida_PALE__HGL_Pputida_162', + 'Pputida_TALE__HGL_Pputida_143', + 'stALE_E_coli_A12_F21_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382', + 'JBI_KHP_HGL_022', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_10_13', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_28_53', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473', + 'JM-Metabolic__GN0_2380', 'RMA_KHP_rpoS_Mage_Q97D', + 'JBI_KHP_HGL_025', 'Pputida_TALE__HGL_Pputida_135', + 'stALE_E_coli_A12_F43_I1_R1', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_26_69', + 'JM-Metabolic__GN0_2172', + 'stALE_E_coli_A15_F42_I1_R1', + 'JM-Metabolic__GN0_2007', + 'Pputida_PALE__HGL_Pputida_154', + 'stALE_E_coli_A16_F134_I1_R1', + 'CDPH-SAL_Salmonella_Typhi_MDL-149', + 'P21_E_coli_ELI352', + 'CDPH-SAL_Salmonella_Typhi_MDL-164', + 'Pputida_PALE__HGL_Pputida_167', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_30_7', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357', + 'stALE_E_coli_A4_F21_I1_R1', 'JM-Metabolic__GN02748', + 'JBI_KHP_HGL_021', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102', + 'JM-Metabolic__GN05002', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25', + 'JM-Metabolic__GN02590', 'stALE_E_coli_A8_F20_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392', + 'stALE_E_coli_A6_F21_I1_R1', + 'JM-Metabolic__GN0_2317', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364', + 'Pputida_TALE__HGL_Pputida_139', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_22_52', + 'P21_E_coli_ELI364', 'Pputida_PALE__HGL_Pputida_166', + 'Pputida_PALE__HGL_Pputida_175', + 'Pputida_PALE__HGL_Pputida_164', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330', + 'CDPH-SAL_Salmonella_Typhi_MDL-143', + 'Pputida_PALE__HGL_Pputida_146', + 'Pputida_TALE__HGL_Pputida_121', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_20_16', + 'P21_E_coli_ELI350', 'Pputida_PALE__HGL_Pputida_161', + 'RMA_KHP_rpoS_Mage_Q97E', + 'stALE_E_coli_A5_F42_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704', + 'Pputida_PALE__HGL_Pputida_176', + 'Pputida_TALE__HGL_Pputida_137', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409', + 'JM-Metabolic__GN04563', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394', + 'Pputida_PALE__HGL_Pputida_172', 'P21_E_coli_ELI367', + 'JM-Metabolic__GN04014', + 'CDPH-SAL_Salmonella_Typhi_MDL-146', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_28_28', + 'Pputida_PALE__HGL_Pputida_160', + 'CDPH-SAL_Salmonella_Typhi_MDL-158', + 'P21_E_coli_ELI363', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523', + 'JM-Metabolic__GN02567', + 'Pputida_JBEI__HGL_Pputida_111_M5', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417', + 'CDPH-SAL_Salmonella_Typhi_MDL-155', + 'Pputida_TALE__HGL_Pputida_133', + 'Pputida_PALE__HGL_Pputida_145', + 'Pputida_JBEI__HGL_Pputida_107_BP6', + 'P21_E_coli_ELI368', 'JM-Metabolic__GN02531', + 'JM-Metabolic__GN0_2165', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355', + 'JM-Metabolic__GN02446', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_24_24', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135', + 'CDPH-SAL_Salmonella_Typhi_MDL-165', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24', + 'Pputida_TALE__HGL_Pputida_132', + 'stALE_E_coli_A10_F131_I1_R1', + 'stALE_E_coli_A17_F21_I1_R1', + 'JM-Metabolic__GN02424', + 'JM-Metabolic__GN02529', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727', + 'Pputida_TALE__HGL_Pputida_119', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378', + 'CDPH-SAL_Salmonella_Typhi_MDL-157', + 'JM-Metabolic__GN0_2354', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407', + 'JBI_KHP_HGL_029_Amitesh_oxyR', + 'JM-Metabolic__GN04094', + 'Pputida_PALE__HGL_Pputida_170', + 'CDPH-SAL_Salmonella_Typhi_MDL-159', + 'Pputida_TALE__HGL_Pputida_118', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_4_48', + 'JM-Metabolic__GN03409', + 'Pputida_TALE__HGL_Pputida_120', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329', + 'P21_E_coli_ELI358', 'P21_E_coli_ELI344', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46', + 'stALE_E_coli_A15_F117_I1_R1', + 'Pputida_PALE__HGL_Pputida_163', + 'Pputida_TALE__HGL_Pputida_112', + 'JM-Metabolic__GN05377', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50', + 'stALE_E_coli_A7_F21_I1_R1', + 'stALE_E_coli_A9_F44_I1_R1', + 'JM-Metabolic__GN0_2009', + 'Pputida_PALE__HGL_Pputida_152', + 'CDPH-SAL_Salmonella_Typhi_MDL-152', + 'JM-Metabolic__GN04682', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63', + 'JM-Metabolic__GN0_2277', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525', + 'RMA_KHP_rpoS_Mage_Q97N', + 'Pputida_TALE__HGL_Pputida_128', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377', + 'CDPH-SAL_Salmonella_Typhi_MDL-153', + 'P21_E_coli_ELI349', 'Pputida_PALE__HGL_Pputida_150', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_18_35', + 'Pputida_PALE__HGL_Pputida_151', 'JBI_KHP_HGL_027', + 'JBI_KHP_HGL_028_Amitesh_soxR', + 'stALE_E_coli_A3_F40_I1_R1', + 'CDPH-SAL_Salmonella_Typhi_MDL-168', + 'JM-Metabolic__GN0_2404', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078', + 'stALE_E_coli_A2_F21_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368', + 'Pputida_TALE__HGL_Pputida_134', + 'Pputida_TALE__HGL_Pputida_141', + 'stALE_E_coli_A16_F20_I1_R1', + 'CDPH-SAL_Salmonella_Typhi_MDL-145', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391', + 'JM-Metabolic__GN05367', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517', + 'JM-Metabolic__GN0_2375', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420', + 'P21_E_coli_ELI365', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41', + 'JM-Metabolic__GN0_2337', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_32_20', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_4_14', + 'P21_E_coli_ELI354', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_4_23', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_28_13', + 'Pputida_PALE__HGL_Pputida_171', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518', + 'JM-Metabolic__GN02501', + 'Pputida_TALE__HGL_Pputida_138', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387', + 'CDPH-SAL_Salmonella_Typhi_MDL-167', + 'CDPH-SAL_Salmonella_Typhi_MDL-161', + 'Pputida_PALE__HGL_Pputida_168', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367', + 'stALE_E_coli_A3_F18_I1_R1', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_30_60', + 'Pputida_TALE__HGL_Pputida_124', + 'Pputida_TALE__HGL_Pputida_142', + 'JM-Metabolic__GN04255', + 'stALE_E_coli_A6_F43_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328', + 'stALE_E_coli_A14_F20_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370', + 'stALE_E_coli_A18_F130_I1_R1', + 'Pputida_PALE__HGL_Pputida_169', + 'P21_E_coli_ELI369', + 'P21_E_coli_ELI347', 'stALE_E_coli_A13_F121_I1_R1', + 'JM-Metabolic__GN0_2393', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_30_22', + 'P21_E_coli_ELI362', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402', + 'JBI_KHP_HGL_024', 'stALE_E_coli_A18_F18_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356', + 'JM-Metabolic__GN0_2094', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21', + 'stALE_E_coli_A18_F39_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404', + 'Pputida_PALE__HGL_Pputida_157', 'P21_E_coli_ELI351', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386', + 'Pputida_PALE__HGL_Pputida_148', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_6_35', + 'P21_E_coli_ELI353', 'Pputida_PALE__HGL_Pputida_147', + 'JM-Metabolic__GN05128', + 'Pputida_PALE__HGL_Pputida_174', + 'Pputida_TALE__HGL_Pputida_115', + 'Pputida_PALE__HGL_Pputida_159', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485', + 'stALE_E_coli_A4_F21_I1_R2', 'JM-Metabolic__GN04665', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371', + 'CDPH-SAL_Salmonella_Typhi_MDL-163', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327', + 'stALE_E_coli_A16_F42_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374', + 'JM-Metabolic__GN03218', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62', + 'Pputida_PALE__HGL_Pputida_155', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_24_9', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384', + 'JM-Metabolic__GN05109', + 'JBI_KHP_HGL_031_Amitesh_rpoS', + 'CDPH-SAL_Salmonella_Typhi_MDL-151', + 'JM-Metabolic__GN04428', 'JM-Metabolic__GN02514', + 'Pputida_JBEI__HGL_Pputida_109_BP8', + 'JM-Metabolic__GN0_2254', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_26_6', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_18_19', + 'Pputida_TALE__HGL_Pputida_123', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405', + 'P21_E_coli_ELI357', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369', + 'Pputida_TALE__HGL_Pputida_136', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521', + 'Pputida_PALE__HGL_Pputida_165', + 'Pputida_TALE__HGL_Pputida_127', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57', + 'stALE_E_coli_A10_F21_I1_R1', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_24_52', + 'Pputida_TALE__HGL_Pputida_126', + 'JM-Metabolic__GN04612'] + + self.gerwick_ids = ['5B', '3A', '6A', '8A', '4A', '7A', 'GFR', 'ISB'] + + self.nyu_ids = ['22_001_710_503_791_00', '22_001_801_552_503_00', + 'AP006367B02', 'AP029018B01', 'AP032412B04', + 'AP032413B04', 'AP046324B02', 'AP046327B02', + 'AP062219B03', 'AP065292B01', 'AP103463B01', + 'AP173299B04', 'AP173301B04', 'AP173305B04', + 'AP223470B01', 'AP298002B02', 'AP309872B03', + 'AP324642B04', 'AP470859B01', 'AP481403B02', + 'AP531397B04', 'AP549678B01', 'AP549681B02', + 'AP568785B04', 'AP568787B02', 'AP581451B02', + 'AP616837B04', 'AP668628B04', 'AP668631B04', + 'AP687591B04', 'AP696363B02', 'AP732307B04', + 'AP744361A02', 'AP745799A04', 'AP771472A04', + 'AP780167B02', 'AP787247B04', 'AP795068B04', + 'AP891020A04', 'AP905750A02', 'AP911328B01', + 'AP953594A02', 'AP959450A03', 'AP967057A04', 'C14', + 'C18', 'C20', 'C3', 'C5', 'C6', 'C9', 'EP001624B01', + 'EP001625B01', 'EP012991B03', 'EP023801B04', + 'EP023808B02', 'EP032410B02', 'EP032412B02', + 'EP043583B01', 'EP054632B01', 'EP061002B01', + 'EP073160B01', 'EP073209B02', 'EP073216B01', + 'EP087938B02', 'EP090129B04', 'EP112567B02', + 'EP121011B01', 'EP121013B01', 'EP128904B02', + 'EP128910B01', 'EP159692B04', 'EP159695B01', + 'EP163771B01', 'EP182060B03', 'EP182065B04', + 'EP182243B02', 'EP182346B04', 'EP184255B04', + 'EP190307B01', 'EP202095B04', 'EP202452B01', + 'EP207036B01', 'EP207041B01', 'EP207042B04', + 'EP212214B01', 'EP216516B04', 'EP230245B01', + 'EP238034B01', 'EP244360B01', 'EP244366B01', + 'EP256644B01', 'EP256645B01', 'EP260543B04', + 'EP260544B04', 'EP273332B04', 'EP282107B01', + 'EP282108B01', 'EP282276B04', 'EP291979B04', + 'EP291980B04', 'EP305735B04', 'EP316863B03', + 'EP320438B01', 'EP333541B04', 'EP337325B04', + 'EP337425B01', 'EP339053B02', 'EP339057B02', + 'EP339059B02', 'EP339061B02', 'EP372981B04', + 'EP379938B01', 'EP385379B01', 'EP385384B01', + 'EP385387B01', 'EP393712B02', 'EP393714B01', + 'EP393715B01', 'EP393717B01', 'EP393718B01', + 'EP400447B04', 'EP400448B04', 'EP410041B01', + 'EP410042B01', 'EP410046B01', 'EP422407B01', + 'EP431562B04', 'EP431570B01', 'EP431575B01', + 'EP446602B01', 'EP446604B03', 'EP446610B02', + 'EP447926B04', 'EP447927B04', 'EP447928B04', + 'EP447929B04', 'EP447940B04', 'EP447975B02', + 'EP448041B04', 'EP451428B04', 'EP455757B04', + 'EP455759B04', 'EP455763B04', 'EP479266B04', + 'EP479270B03', 'EP479794B02', 'EP479894B04', + 'EP483291B04', 'EP484973B04', 'EP487995B04', + 'EP504030B04', 'EP529635B02', 'EP533388B01', + 'EP533389B03', 'EP533426B03', 'EP533429B04', + 'EP542577B04', 'EP542578B04', 'EP554501B04', + 'EP554506B04', 'EP554513B02', 'EP554515B04', + 'EP554518B04', 'EP573296B01', 'EP573310B01', + 'EP573313B01', 'EP584756B04', 'EP587475B04', + 'EP587476B04', 'EP587477B04', 'EP587478B04', + 'EP606652B04', 'EP606656B03', 'EP606662B04', + 'EP606663B04', 'EP617440B01', 'EP617441B01', + 'EP617442B01', 'EP617443B01', 'EP636802A01', + 'EP649418A02', 'EP649623A01', 'EP649653A04', + 'EP649737A03', 'EP656055A04', 'EP657260A01', + 'EP657385A04', 'EP657386A01', 'EP667743A04', + 'EP675042B01', 'EP675044A01', 'EP675075A04', + 'EP683835A01', 'EP685640B01', 'EP702221B04', + 'EP718687A04', 'EP718688A01', 'EP721390A04', + 'EP724905B01', 'EP727972A04', 'EP729433A02', + 'EP729434A01', 'EP738468A01', 'EP738469A01', + 'EP749735A07', 'EP759450A04', 'EP768164A02', + 'EP768748A04', 'EP772143A02', 'EP772145A02', + 'EP784608A01', 'EP786631A04', 'EP790019A01', + 'EP790020A02', 'EP790021A04', 'EP790023A01', + 'EP805337A01', 'EP808104A01', 'EP808105A01', + 'EP808106A01', 'EP808109A01', 'EP808110A04', + 'EP808111A03', 'EP808112A04', 'EP843906A04', + 'EP846485A01', 'EP868682A01', 'EP872341A01', + 'EP876243A04', 'EP882752A01', 'EP886422A01', + 'EP890157A02', 'EP890158A02', 'EP899038A04', + 'EP905975A04', 'EP915769A04', 'EP921593A04', + 'EP921594A04', 'EP927458A04', 'EP927459A04', + 'EP927461A04', 'EP927462A02', 'EP929277A02', + 'EP940013A01', 'EP944059A02', 'EP970001A01', + 'EP970005A01', 'EP980752B04', 'EP981129A02', + 'EP987683A01', 'EP996831B04', 'LP127767A01', + 'LP127890A01', 'LP128476A01', 'LP128479A01', + 'LP128538A01', 'LP128539A01', 'LP128540A01', + 'LP128541A01', 'LP128543A01', 'LP154981A01', + 'LP154986A01', 'LP166715A01', 'LP169879A01', + 'LP191039A01', 'LP196272A01', 'SP205732A02', + 'SP205754A01', 'SP229387A04', 'SP230380A02', + 'SP230381A01', 'SP230382A04', 'SP231628A02', + 'SP231629A02', 'SP231630A02', 'SP231631A02', + 'SP232077A04', 'SP232079A01', 'SP232114A04', + 'SP232270A02', 'SP232309A01', 'SP232310A04', + 'SP232311A04', 'SP235186A04', 'SP235189A01', + 'SP246941A01', 'SP247340A04', 'SP257517A04', + 'SP257519A04', 'SP280481A02', 'SP284095A03', + 'SP284096A02', 'SP317293A02', 'SP317297A02', + 'SP331134A04', 'SP335002A04', 'SP353893A02', + 'SP365864A04', 'SP388683A02', 'SP399724A04', + 'SP404403A02', 'SP404405A02', 'SP404409A02', + 'SP404412A02', 'SP408629A01', 'SP410793A01', + 'SP410796A02', 'SP415021A02', 'SP415023A02', + 'SP415025A01', 'SP415030A01', 'SP416130A04', + 'SP453872A01', 'SP464350A04', 'SP464352A03', + 'SP471496A04', 'SP478193A02', 'SP490298A02', + 'SP491897A02', 'SP491898A02', 'SP491900A02', + 'SP491907A02', 'SP503615A02', 'SP506933A04', + 'SP511289A02', 'SP511294A04', 'SP515443A04', + 'SP515763A04', 'SP531696A04', 'SP561451A04', + 'SP573823A04', 'SP573824A04', 'SP573843A04', + 'SP573849A04', 'SP573859A04', 'SP573860A01', + 'SP577399A02', 'SP584547A02', 'SP584551A08', + 'SP612495A04', 'SP612496A01', 'SP631994A04', + 'SP640978A02', 'SP641029A02', 'SP645141A03', + 'SP681591A04', 'SP683466A02', 'SP704319A04', + 'SP754514A04', 'ep256643b01', 'lp127896a01'] + + self.sample_ids = self.feist_ids + self.gerwick_ids + self.nyu_ids + + base_path = join(self.output_path, 'FastQCJob') + file_names = [] + makedirs(join(base_path, 'Feist_11661', 'trimmed_sequences'), + exist_ok=True) + makedirs(join(base_path, 'Gerwick_6123', 'filtered_sequences'), + exist_ok=True) + + file_names.append(join(base_path, + 'Feist_11661', + 'trimmed_sequences', + ('CDPH-SAL_Salmonella_Typhi_MDL-143_S1_L003_R1_' + '001.trimmed_fastqc.html'))) + + file_names.append(join(base_path, + 'Gerwick_6123', + 'filtered_sequences', + '3A_S169_L003_R2_001.trimmed_fastqc.html')) + + # write files out to disk + for file_name in file_names: + with open(file_name, 'w') as f2: + f2.write("This is a file.") + + # set up dummy logs + self.fastqc_log_path = join(self.output_path, "FastQCJob", "logs") + makedirs(self.fastqc_log_path, exist_ok=True) + + log_files = { + 'slurm-9999999_35.out': ["---------------", + "Run details:", + ("hds-fe848a9e-c0e9-49d9-978d-" + "27565a314e8b 1908305 b2-018"), + "---------------", + "+ this", + "+ that", + "+ blah", + ("something error: Generic Standin Error" + " (GSE).")], + 'slurm-9999999_17.out': ["---------------", + "Run details:", + ("hds-fe848a9e-c0e9-49d9-978d-" + "27565a314e8b 1908305 b2-018"), + "---------------", + "+ this", + "+ that", + "+ blah", + ("something error: Another Standin Error" + " (ASE).")] + } + + for log_file in log_files: + fp = join(self.fastqc_log_path, log_file) + + with open(fp, 'w') as f: + lines = log_files[log_file] + for line in lines: + f.write(f"{line}\n") + + def tearDown(self): + rmtree(self.output_path) + + zero_path = join(self.raw_fastq_files_path, 'zero_files') + + if exists(zero_path): + for f in listdir(zero_path): + source = join(zero_path, f) + move(source, join(self.raw_fastq_files_path, f)) + + rmtree(zero_path) + + def test_generate_job_scripts(self): + job = FastQCJob(self.qc_root_path, self.output_path, + self.raw_fastq_files_path.replace('/project1', ''), + self.processed_fastq_files_path, + 16, 16, + 'tests/bin/fastqc', + ['my_module.1.1'], self.qiita_job_id, 'queue_name', + 4, 23, '8g', 30, 1000, False) + + job_script_path = join(job.output_path, 'FastQCJob.sh') + array_details_path = join(job.output_path, 'FastQCJob.array-details') + self.assertEqual(exists(job_script_path), True) + self.assertEqual(exists(array_details_path), True) + + exp = ["#!/bin/bash", + "#SBATCH -J abcdabcdabcdabcdabcdabcdabcdabcd_FastQCJob", + "#SBATCH -p queue_name", "#SBATCH -N 4", "#SBATCH -n 16", + "#SBATCH --time 23", "#SBATCH --mem 8gG", + "#SBATCH --array 1-4%30", "set -x", "set +e", + "set -o pipefail", "date", "hostname", + "echo ${SLURM_JOBID} ${SLURM_ARRAY_TASK_ID}", + "cd tests/data/output_dir2/" + "FastQCJob", "", "module load my_module.1.1", "", + "step=${SLURM_ARRAY_TASK_ID}", + "cmd0=$(head -n $step tests/data/" + "output_dir2/FastQCJob/FastQCJob.array-details | tail -n 1)", + "eval $cmd0", "echo \"Cmd Completed: $cmd0\" > logs/FastQCJob_" + "$step.completed"] + + with open(job_script_path, 'r') as f: + obs = f.readlines() + obs = [x.strip() for x in obs] + + for a, b in zip(obs, exp): + self.assertEqual(a, b) + + exp = ["fastqc --noextract -t 16 tests/da" + "ta/211021_A00000_0000_SAMPLE/Data/Fastq/project1/sample1_R1_.f" + "astq.gz tests/data/211021_A00000_" + "0000_SAMPLE/Data/Fastq/project1/sample1_R2_.fastq.gz -o " + "tests/data/output_dir2/FastQCJob/fastqc" + "/project1/bclconvert", + "fastqc --noextract -t 16 tests/da" + "ta/211021_A00000_0000_SAMPLE/Data/Fastq/project1/sample2_R1_.f" + "astq.gz tests/data/211021_A00000_" + "0000_SAMPLE/Data/Fastq/project1/sample2_R2_.fastq.gz -o " + "tests/data/output_dir2/FastQCJob/fastqc" + "/project1/bclconvert", + "fastqc --noextract -t 16 tests/da" + "ta/211021_A00000_0000_SAMPLE/sample-sequence-directory/project" + "1/filtered_sequences/sample1_R1_.trimmed.fastq.gz " + "tests/data/211021_A00000_0000_SAMPLE/sample-s" + "equence-directory/project1/filtered_sequences/sample1_R2_.trim" + "med.fastq.gz -o tests/data/output" + "_dir2/FastQCJob/fastqc/project1/filtered_sequences", + "fastqc --noextract -t 16 tests/da" + "ta/211021_A00000_0000_SAMPLE/sample-sequence-directory/project" + "1/filtered_sequences/sample2_R1_.trimmed.fastq.gz " + "tests/data/211021_A00000_0000_SAMPLE/sample-s" + "equence-directory/project1/filtered_sequences/sample2_R2_.trim" + "med.fastq.gz -o tests/data/output" + "_dir2/FastQCJob/fastqc/project1/filtered_sequences"] + + with open(array_details_path, 'r') as f: + obs = f.readlines() + obs = [x.strip() for x in obs] + + for a, b in zip(obs, exp): + self.assertEqual(a, b) + + def test_audit(self): + job = FastQCJob(self.qc_root_path, self.output_path, + self.raw_fastq_files_path.replace('/project1', ''), + self.processed_fastq_files_path, + 16, 16, + 'tests/bin/fastqc', [], + self.qiita_job_id, 'queue_name', 4, 23, '8g', 30, + 1000, False) + + obs = job.audit(self.sample_ids) + + exp = ['22_001_710_503_791_00', '22_001_801_552_503_00', '4A', + '5B', '6A', '7A', '8A', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51', + 'AP006367B02', 'AP029018B01', 'AP032412B04', 'AP032413B04', + 'AP046324B02', 'AP046327B02', 'AP062219B03', 'AP065292B01', + 'AP103463B01', 'AP173299B04', 'AP173301B04', 'AP173305B04', + 'AP223470B01', 'AP298002B02', 'AP309872B03', 'AP324642B04', + 'AP470859B01', 'AP481403B02', 'AP531397B04', 'AP549678B01', + 'AP549681B02', 'AP568785B04', 'AP568787B02', 'AP581451B02', + 'AP616837B04', 'AP668628B04', 'AP668631B04', 'AP687591B04', + 'AP696363B02', 'AP732307B04', 'AP744361A02', 'AP745799A04', + 'AP771472A04', 'AP780167B02', 'AP787247B04', 'AP795068B04', + 'AP891020A04', 'AP905750A02', 'AP911328B01', 'AP953594A02', + 'AP959450A03', 'AP967057A04', 'C14', 'C18', 'C20', 'C3', 'C5', + 'C6', 'C9', + 'CDPH-SAL_Salmonella_Typhi_MDL-144', + 'CDPH-SAL_Salmonella_Typhi_MDL-145', + 'CDPH-SAL_Salmonella_Typhi_MDL-146', + 'CDPH-SAL_Salmonella_Typhi_MDL-147', + 'CDPH-SAL_Salmonella_Typhi_MDL-148', + 'CDPH-SAL_Salmonella_Typhi_MDL-149', + 'CDPH-SAL_Salmonella_Typhi_MDL-150', + 'CDPH-SAL_Salmonella_Typhi_MDL-151', + 'CDPH-SAL_Salmonella_Typhi_MDL-152', + 'CDPH-SAL_Salmonella_Typhi_MDL-153', + 'CDPH-SAL_Salmonella_Typhi_MDL-154', + 'CDPH-SAL_Salmonella_Typhi_MDL-155', + 'CDPH-SAL_Salmonella_Typhi_MDL-156', + 'CDPH-SAL_Salmonella_Typhi_MDL-157', + 'CDPH-SAL_Salmonella_Typhi_MDL-158', + 'CDPH-SAL_Salmonella_Typhi_MDL-159', + 'CDPH-SAL_Salmonella_Typhi_MDL-160', + 'CDPH-SAL_Salmonella_Typhi_MDL-161', + 'CDPH-SAL_Salmonella_Typhi_MDL-162', + 'CDPH-SAL_Salmonella_Typhi_MDL-163', + 'CDPH-SAL_Salmonella_Typhi_MDL-164', + 'CDPH-SAL_Salmonella_Typhi_MDL-165', + 'CDPH-SAL_Salmonella_Typhi_MDL-166', + 'CDPH-SAL_Salmonella_Typhi_MDL-167', + 'CDPH-SAL_Salmonella_Typhi_MDL-168', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_10_13', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_10_28', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_10_51', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_4_14', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_4_23', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_4_48', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_6_21', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_6_35', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_18_19', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_18_35', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_18_59', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_20_16', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_20_43', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_20_71', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_22_16', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_22_28', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_22_52', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_24_24', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_24_52', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_24_9', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_26_27', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_26_6', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_26_69', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_28_13', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_28_28', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_28_53', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_30_22', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_30_60', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_30_7', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_32_20', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_32_56', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_32_6', 'EP001624B01', + 'EP001625B01', 'EP012991B03', 'EP023801B04', 'EP023808B02', + 'EP032410B02', 'EP032412B02', 'EP043583B01', 'EP054632B01', + 'EP061002B01', 'EP073160B01', 'EP073209B02', 'EP073216B01', + 'EP087938B02', 'EP090129B04', 'EP112567B02', 'EP121011B01', + 'EP121013B01', 'EP128904B02', 'EP128910B01', 'EP159692B04', + 'EP159695B01', 'EP163771B01', 'EP182060B03', 'EP182065B04', + 'EP182243B02', 'EP182346B04', 'EP184255B04', 'EP190307B01', + 'EP202095B04', 'EP202452B01', 'EP207036B01', 'EP207041B01', + 'EP207042B04', 'EP212214B01', 'EP216516B04', 'EP230245B01', + 'EP238034B01', 'EP244360B01', 'EP244366B01', 'EP256644B01', + 'EP256645B01', 'EP260543B04', 'EP260544B04', 'EP273332B04', + 'EP282107B01', 'EP282108B01', 'EP282276B04', 'EP291979B04', + 'EP291980B04', 'EP305735B04', 'EP316863B03', 'EP320438B01', + 'EP333541B04', 'EP337325B04', 'EP337425B01', 'EP339053B02', + 'EP339057B02', 'EP339059B02', 'EP339061B02', 'EP372981B04', + 'EP379938B01', 'EP385379B01', 'EP385384B01', 'EP385387B01', + 'EP393712B02', 'EP393714B01', 'EP393715B01', 'EP393717B01', + 'EP393718B01', 'EP400447B04', 'EP400448B04', 'EP410041B01', + 'EP410042B01', 'EP410046B01', 'EP422407B01', 'EP431562B04', + 'EP431570B01', 'EP431575B01', 'EP446602B01', 'EP446604B03', + 'EP446610B02', 'EP447926B04', 'EP447927B04', 'EP447928B04', + 'EP447929B04', 'EP447940B04', 'EP447975B02', 'EP448041B04', + 'EP451428B04', 'EP455757B04', 'EP455759B04', 'EP455763B04', + 'EP479266B04', 'EP479270B03', 'EP479794B02', 'EP479894B04', + 'EP483291B04', 'EP484973B04', 'EP487995B04', 'EP504030B04', + 'EP529635B02', 'EP533388B01', 'EP533389B03', 'EP533426B03', + 'EP533429B04', 'EP542577B04', 'EP542578B04', 'EP554501B04', + 'EP554506B04', 'EP554513B02', 'EP554515B04', 'EP554518B04', + 'EP573296B01', 'EP573310B01', 'EP573313B01', 'EP584756B04', + 'EP587475B04', 'EP587476B04', 'EP587477B04', 'EP587478B04', + 'EP606652B04', 'EP606656B03', 'EP606662B04', 'EP606663B04', + 'EP617440B01', 'EP617441B01', 'EP617442B01', 'EP617443B01', + 'EP636802A01', 'EP649418A02', 'EP649623A01', 'EP649653A04', + 'EP649737A03', 'EP656055A04', 'EP657260A01', 'EP657385A04', + 'EP657386A01', 'EP667743A04', 'EP675042B01', 'EP675044A01', + 'EP675075A04', 'EP683835A01', 'EP685640B01', 'EP702221B04', + 'EP718687A04', 'EP718688A01', 'EP721390A04', 'EP724905B01', + 'EP727972A04', 'EP729433A02', 'EP729434A01', 'EP738468A01', + 'EP738469A01', 'EP749735A07', 'EP759450A04', 'EP768164A02', + 'EP768748A04', 'EP772143A02', 'EP772145A02', 'EP784608A01', + 'EP786631A04', 'EP790019A01', 'EP790020A02', 'EP790021A04', + 'EP790023A01', 'EP805337A01', 'EP808104A01', 'EP808105A01', + 'EP808106A01', 'EP808109A01', 'EP808110A04', 'EP808111A03', + 'EP808112A04', 'EP843906A04', 'EP846485A01', 'EP868682A01', + 'EP872341A01', 'EP876243A04', 'EP882752A01', 'EP886422A01', + 'EP890157A02', 'EP890158A02', 'EP899038A04', 'EP905975A04', + 'EP915769A04', 'EP921593A04', 'EP921594A04', 'EP927458A04', + 'EP927459A04', 'EP927461A04', 'EP927462A02', 'EP929277A02', + 'EP940013A01', 'EP944059A02', 'EP970001A01', 'EP970005A01', + 'EP980752B04', 'EP981129A02', 'EP987683A01', 'EP996831B04', + 'GFR', 'ISB', 'JBI_KHP_HGL_021', 'JBI_KHP_HGL_022', + 'JBI_KHP_HGL_023', 'JBI_KHP_HGL_024', 'JBI_KHP_HGL_025', + 'JBI_KHP_HGL_026', 'JBI_KHP_HGL_027', + 'JBI_KHP_HGL_028_Amitesh_soxR', 'JBI_KHP_HGL_029_Amitesh_oxyR', + 'JBI_KHP_HGL_030_Amitesh_soxR_oxyR', + 'JBI_KHP_HGL_031_Amitesh_rpoS', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154', + 'JM-Metabolic__GN02424', 'JM-Metabolic__GN02446', + 'JM-Metabolic__GN02449', 'JM-Metabolic__GN02487', + 'JM-Metabolic__GN02501', 'JM-Metabolic__GN02514', + 'JM-Metabolic__GN02529', 'JM-Metabolic__GN02531', + 'JM-Metabolic__GN02567', 'JM-Metabolic__GN02590', + 'JM-Metabolic__GN02657', 'JM-Metabolic__GN02748', + 'JM-Metabolic__GN02766', 'JM-Metabolic__GN02769', + 'JM-Metabolic__GN02787', 'JM-Metabolic__GN03132', + 'JM-Metabolic__GN03218', 'JM-Metabolic__GN03252', + 'JM-Metabolic__GN03409', 'JM-Metabolic__GN04014', + 'JM-Metabolic__GN04094', 'JM-Metabolic__GN04255', + 'JM-Metabolic__GN04306', 'JM-Metabolic__GN04428', + 'JM-Metabolic__GN04488', 'JM-Metabolic__GN04540', + 'JM-Metabolic__GN04563', 'JM-Metabolic__GN04612', + 'JM-Metabolic__GN04665', 'JM-Metabolic__GN04682', + 'JM-Metabolic__GN05002', 'JM-Metabolic__GN05109', + 'JM-Metabolic__GN05128', 'JM-Metabolic__GN05367', + 'JM-Metabolic__GN05377', 'JM-Metabolic__GN0_2005', + 'JM-Metabolic__GN0_2007', 'JM-Metabolic__GN0_2009', + 'JM-Metabolic__GN0_2094', 'JM-Metabolic__GN0_2099', + 'JM-Metabolic__GN0_2148', 'JM-Metabolic__GN0_2165', + 'JM-Metabolic__GN0_2169', 'JM-Metabolic__GN0_2172', + 'JM-Metabolic__GN0_2175', 'JM-Metabolic__GN0_2183', + 'JM-Metabolic__GN0_2215', 'JM-Metabolic__GN0_2254', + 'JM-Metabolic__GN0_2277', 'JM-Metabolic__GN0_2290', + 'JM-Metabolic__GN0_2317', 'JM-Metabolic__GN0_2337', + 'JM-Metabolic__GN0_2354', 'JM-Metabolic__GN0_2375', + 'JM-Metabolic__GN0_2380', 'JM-Metabolic__GN0_2393', + 'JM-Metabolic__GN0_2404', 'LP127767A01', 'LP127890A01', + 'LP128476A01', 'LP128479A01', 'LP128538A01', 'LP128539A01', + 'LP128540A01', 'LP128541A01', 'LP128543A01', 'LP154981A01', + 'LP154986A01', 'LP166715A01', 'LP169879A01', 'LP191039A01', + 'LP196272A01', 'P21_E_coli_ELI344', 'P21_E_coli_ELI345', + 'P21_E_coli_ELI347', 'P21_E_coli_ELI348', 'P21_E_coli_ELI349', + 'P21_E_coli_ELI350', 'P21_E_coli_ELI351', 'P21_E_coli_ELI352', + 'P21_E_coli_ELI353', 'P21_E_coli_ELI354', 'P21_E_coli_ELI355', + 'P21_E_coli_ELI357', 'P21_E_coli_ELI358', 'P21_E_coli_ELI359', + 'P21_E_coli_ELI361', 'P21_E_coli_ELI362', 'P21_E_coli_ELI363', + 'P21_E_coli_ELI364', 'P21_E_coli_ELI365', 'P21_E_coli_ELI366', + 'P21_E_coli_ELI367', 'P21_E_coli_ELI368', 'P21_E_coli_ELI369', + 'Pputida_JBEI__HGL_Pputida_107_BP6', + 'Pputida_JBEI__HGL_Pputida_108_BP7', + 'Pputida_JBEI__HGL_Pputida_109_BP8', + 'Pputida_JBEI__HGL_Pputida_110_M2', + 'Pputida_JBEI__HGL_Pputida_111_M5', + 'Pputida_PALE__HGL_Pputida_145', + 'Pputida_PALE__HGL_Pputida_146', + 'Pputida_PALE__HGL_Pputida_147', + 'Pputida_PALE__HGL_Pputida_148', + 'Pputida_PALE__HGL_Pputida_149', + 'Pputida_PALE__HGL_Pputida_150', + 'Pputida_PALE__HGL_Pputida_151', + 'Pputida_PALE__HGL_Pputida_152', + 'Pputida_PALE__HGL_Pputida_153', + 'Pputida_PALE__HGL_Pputida_154', + 'Pputida_PALE__HGL_Pputida_155', + 'Pputida_PALE__HGL_Pputida_156', + 'Pputida_PALE__HGL_Pputida_157', + 'Pputida_PALE__HGL_Pputida_158', + 'Pputida_PALE__HGL_Pputida_159', + 'Pputida_PALE__HGL_Pputida_160', + 'Pputida_PALE__HGL_Pputida_161', + 'Pputida_PALE__HGL_Pputida_162', + 'Pputida_PALE__HGL_Pputida_163', + 'Pputida_PALE__HGL_Pputida_164', + 'Pputida_PALE__HGL_Pputida_165', + 'Pputida_PALE__HGL_Pputida_166', + 'Pputida_PALE__HGL_Pputida_167', + 'Pputida_PALE__HGL_Pputida_168', + 'Pputida_PALE__HGL_Pputida_169', + 'Pputida_PALE__HGL_Pputida_170', + 'Pputida_PALE__HGL_Pputida_171', + 'Pputida_PALE__HGL_Pputida_172', + 'Pputida_PALE__HGL_Pputida_173', + 'Pputida_PALE__HGL_Pputida_174', + 'Pputida_PALE__HGL_Pputida_175', + 'Pputida_PALE__HGL_Pputida_176', + 'Pputida_TALE__HGL_Pputida_112', + 'Pputida_TALE__HGL_Pputida_113', + 'Pputida_TALE__HGL_Pputida_114', + 'Pputida_TALE__HGL_Pputida_115', + 'Pputida_TALE__HGL_Pputida_116', + 'Pputida_TALE__HGL_Pputida_117', + 'Pputida_TALE__HGL_Pputida_118', + 'Pputida_TALE__HGL_Pputida_119', + 'Pputida_TALE__HGL_Pputida_120', + 'Pputida_TALE__HGL_Pputida_121', + 'Pputida_TALE__HGL_Pputida_122', + 'Pputida_TALE__HGL_Pputida_123', + 'Pputida_TALE__HGL_Pputida_124', + 'Pputida_TALE__HGL_Pputida_125', + 'Pputida_TALE__HGL_Pputida_126', + 'Pputida_TALE__HGL_Pputida_127', + 'Pputida_TALE__HGL_Pputida_128', + 'Pputida_TALE__HGL_Pputida_129', + 'Pputida_TALE__HGL_Pputida_130', + 'Pputida_TALE__HGL_Pputida_131', + 'Pputida_TALE__HGL_Pputida_132', + 'Pputida_TALE__HGL_Pputida_133', + 'Pputida_TALE__HGL_Pputida_134', + 'Pputida_TALE__HGL_Pputida_135', + 'Pputida_TALE__HGL_Pputida_136', + 'Pputida_TALE__HGL_Pputida_137', + 'Pputida_TALE__HGL_Pputida_138', + 'Pputida_TALE__HGL_Pputida_139', + 'Pputida_TALE__HGL_Pputida_140', + 'Pputida_TALE__HGL_Pputida_141', + 'Pputida_TALE__HGL_Pputida_142', + 'Pputida_TALE__HGL_Pputida_143', + 'Pputida_TALE__HGL_Pputida_144', 'RMA_KHP_rpoS_Mage_Q97D', + 'RMA_KHP_rpoS_Mage_Q97E', 'RMA_KHP_rpoS_Mage_Q97L', + 'RMA_KHP_rpoS_Mage_Q97N', 'SP205732A02', 'SP205754A01', + 'SP229387A04', 'SP230380A02', 'SP230381A01', 'SP230382A04', + 'SP231628A02', 'SP231629A02', 'SP231630A02', 'SP231631A02', + 'SP232077A04', 'SP232079A01', 'SP232114A04', 'SP232270A02', + 'SP232309A01', 'SP232310A04', 'SP232311A04', 'SP235186A04', + 'SP235189A01', 'SP246941A01', 'SP247340A04', 'SP257517A04', + 'SP257519A04', 'SP280481A02', 'SP284095A03', 'SP284096A02', + 'SP317293A02', 'SP317297A02', 'SP331134A04', 'SP335002A04', + 'SP353893A02', 'SP365864A04', 'SP388683A02', 'SP399724A04', + 'SP404403A02', 'SP404405A02', 'SP404409A02', 'SP404412A02', + 'SP408629A01', 'SP410793A01', 'SP410796A02', 'SP415021A02', + 'SP415023A02', 'SP415025A01', 'SP415030A01', 'SP416130A04', + 'SP453872A01', 'SP464350A04', 'SP464352A03', 'SP471496A04', + 'SP478193A02', 'SP490298A02', 'SP491897A02', 'SP491898A02', + 'SP491900A02', 'SP491907A02', 'SP503615A02', 'SP506933A04', + 'SP511289A02', 'SP511294A04', 'SP515443A04', 'SP515763A04', + 'SP531696A04', 'SP561451A04', 'SP573823A04', 'SP573824A04', + 'SP573843A04', 'SP573849A04', 'SP573859A04', 'SP573860A01', + 'SP577399A02', 'SP584547A02', 'SP584551A08', 'SP612495A04', + 'SP612496A01', 'SP631994A04', 'SP640978A02', 'SP641029A02', + 'SP645141A03', 'SP681591A04', 'SP683466A02', 'SP704319A04', + 'SP754514A04', 'ep256643b01', 'lp127896a01', + 'stALE_E_coli_A10_F131_I1_R1', 'stALE_E_coli_A10_F21_I1_R1', + 'stALE_E_coli_A10_F43_I1_R1', 'stALE_E_coli_A11_F119_I1_R1', + 'stALE_E_coli_A11_F21_I1_R1', 'stALE_E_coli_A11_F43_I1_R1', + 'stALE_E_coli_A12_F136_I1_R1', 'stALE_E_coli_A12_F21_I1_R1', + 'stALE_E_coli_A12_F43_I1_R1', 'stALE_E_coli_A13_F121_I1_R1', + 'stALE_E_coli_A13_F20_I1_R1', 'stALE_E_coli_A13_F42_I1_R1', + 'stALE_E_coli_A14_F133_I1_R1', 'stALE_E_coli_A14_F20_I1_R1', + 'stALE_E_coli_A14_F42_I1_R1', 'stALE_E_coli_A15_F117_I1_R1', + 'stALE_E_coli_A15_F21_I1_R1', 'stALE_E_coli_A15_F42_I1_R1', + 'stALE_E_coli_A16_F134_I1_R1', 'stALE_E_coli_A16_F20_I1_R1', + 'stALE_E_coli_A16_F42_I1_R1', 'stALE_E_coli_A17_F118_I1_R1', + 'stALE_E_coli_A17_F21_I1_R1', 'stALE_E_coli_A18_F130_I1_R1', + 'stALE_E_coli_A18_F18_I1_R1', 'stALE_E_coli_A18_F39_I1_R1', + 'stALE_E_coli_A1_F21_I1_R1', 'stALE_E_coli_A2_F21_I1_R1', + 'stALE_E_coli_A3_F18_I1_R1', 'stALE_E_coli_A3_F40_I1_R1', + 'stALE_E_coli_A4_F21_I1_R1', 'stALE_E_coli_A4_F21_I1_R2', + 'stALE_E_coli_A4_F42_I1_R1', 'stALE_E_coli_A5_F21_I1_R1', + 'stALE_E_coli_A5_F42_I1_R1', 'stALE_E_coli_A6_F21_I1_R1', + 'stALE_E_coli_A6_F43_I1_R1', 'stALE_E_coli_A7_F21_I1_R1', + 'stALE_E_coli_A7_F42_I1_R1', 'stALE_E_coli_A8_F20_I1_R1', + 'stALE_E_coli_A8_F42_I1_R1', 'stALE_E_coli_A9_F21_I1_R1', + 'stALE_E_coli_A9_F44_I1_R1'] + + self.assertEqual(sorted(obs), sorted(exp)) + + # these fake sample-ids should be returned by audit() as missing. + obs = job.audit(self.sample_ids + ['not-a-sample', 'BLANK1']) + obs = sorted(obs) + exp = sorted(exp + ['BLANK1', 'not-a-sample']) + + self.assertListEqual(obs, exp) + + def test_all_zero_files(self): + # create a 'zero_files' sub-folder and move all files there + # temporarily. + mkdir(join(self.raw_fastq_files_path, 'zero_files')) + + for f in listdir(self.raw_fastq_files_path): + source = join(self.raw_fastq_files_path, f) + if isfile(source): + move(source, join(self.raw_fastq_files_path, 'zero_files', f)) + + # attempt to create a FastQCJob when all input fastq files are in + # zero_files. This will cause an Error if all fastq files for just + # one project are 'zero-filed', even if there are other projects where + # this is not the case. + with self.assertRaises(PipelineError) as e: + FastQCJob(self.qc_root_path, self.output_path, + self.raw_fastq_files_path.replace('/project1', ''), + self.processed_fastq_files_path, + 16, 16, + 'tests/bin/fastqc', [], + self.qiita_job_id, 'queue_name', 4, 23, '8g', 30, + 1000, False) + + self.assertEqual(str(e.exception), "There are no fastq files for " + "FastQCJob to process in " + "tests/data/" + "211021_A00000_0000_SAMPLE/Data/" + "Fastq.") + + def test_completed_file_generation(self): + job = FastQCJob(self.qc_root_path, self.output_path, + self.raw_fastq_files_path.replace('/project1', ''), + self.processed_fastq_files_path, + 16, 16, + 'tests/bin/fastqc', [], + self.qiita_job_id, 'queue_name', 4, 23, '8g', 30, + 1000, False) + + my_path = join(self.output_path, 'FastQCJob', 'logs') + + # since .completed files are generated when jobs are submitted via + # the run() method and completed successfully, we must manually + # create the files _was_successful() expects to see. + for i in range(1, 5): + with open(join(my_path, f'project1_{i}.completed'), 'w') as f: + f.write("This is a .completed file.") + + self.assertTrue(len(job._get_failed_indexes('1234.barnacle')) == 0) + + def test_completed_file_generation_some_failures(self): + job = FastQCJob(self.qc_root_path, self.output_path, + self.raw_fastq_files_path.replace('/project1', ''), + self.processed_fastq_files_path, + 16, 16, + 'tests/bin/fastqc', [], + self.qiita_job_id, 'queue_name', 4, 23, '8g', 30, + 1000, False) + + my_path = join(self.output_path, 'FastQCJob', 'logs') + + # simulate one job failing and not generating a .completed file by + # setting range to (0,3) from (0,4). get_failed_indexes() should + # return [3] as a result. + for i in range(0, 3): + with open(join(my_path, f'project1_{i}.completed'), 'w') as f: + f.write("This is a .completed file.") + + failed_indexes = job._get_failed_indexes('2345.barnacle') + self.assertTrue(failed_indexes, [3]) + + # verify that when one or more array jobs have failed to complete, + # a file is created that gives a job id and an array index. + log_fp = join(self.output_path, + 'FastQCJob', + 'logs', + 'failed_indexes_2345.barnacle.json') + + self.assertTrue(exists(log_fp)) + + with open(log_fp, 'r') as f: + obs = load(f) + exp = {"job_id": "2345.barnacle", + "failed_indexes": [3, 4]} + self.assertDictEqual(obs, exp) + + def test_error_msg_from_logs(self): + job = FastQCJob(self.qc_root_path, self.output_path, + self.raw_fastq_files_path.replace('/project1', ''), + self.processed_fastq_files_path, + 16, 16, + 'tests/bin/fastqc', [], + self.qiita_job_id, 'queue_name', 4, 23, '8g', 30, + 1000, False) + + self.assertFalse(job is None) + + # an internal method to force submit_job() to raise a JobFailedError + # instead of submitting the job w/sbatch and waiting for a failed + # job w/squeue. + self.assertTrue(job._toggle_force_job_fail()) + + try: + job.run() + except JobFailedError as e: + # assert that the text of the original error message was + # preserved, while including known strings from each of the + # sample log-files. + print(str(e)) + self.assertIn('This job died.', str(e)) + self.assertIn('something error: Generic Standin Error (GSE)', + str(e)) + self.assertIn('something error: Another Standin Error (ASE)', + str(e)) + + +if __name__ == '__main__': + unittest.main() diff --git a/tests/test_GenPrepFileJob.py b/tests/test_GenPrepFileJob.py new file mode 100644 index 00000000..932fefc4 --- /dev/null +++ b/tests/test_GenPrepFileJob.py @@ -0,0 +1,240 @@ +from sequence_processing_pipeline.GenPrepFileJob import GenPrepFileJob +from os.path import join +from os import makedirs +import unittest +import shutil +import re + + +class TestGenPrepFileJob(unittest.TestCase): + def setUp(self): + self.package_root = '' + self.qiita_job_id = 'b197f317-1c06-4619-9af3-65721149c1e8' + self.working_directory_root = join(self.package_root, + self.qiita_job_id) + try: + shutil.rmtree(self.working_directory_root) + except FileNotFoundError: + # Clean up test directory just in case + pass + makedirs(self.working_directory_root) + self.run_id = '210518_A00953_0305_TEST' + self.run_dir = join(self.working_directory_root, self.run_id) + self.convert_job_path = join(self.run_dir, 'ConvertJob') + self.reports_path = join(self.convert_job_path, 'Reports') + makedirs(self.reports_path, exist_ok=True) + self.qc_job_path = join(self.run_dir, 'QCJob') + self.project_list = ['Project1'] + makedirs(join(self.qc_job_path, self.project_list[0], + 'filtered_sequences')) + makedirs(join(self.qc_job_path, self.project_list[0], + 'fastp_reports_dir', 'json')) + + def tearDown(self): + shutil.rmtree(self.working_directory_root) + + def test_creation(self): + sample_sheet_path = join(self.package_root, 'tests', 'data', + 'good-sample-sheet.csv') + + job = GenPrepFileJob(self.run_dir, + self.convert_job_path, + self.qc_job_path, + join(self.working_directory_root, 'OutputPath'), + sample_sheet_path, + 'seqpro', + [], + 'abcdabcdabcdabcdabcdabcdabcdabcd', + self.reports_path) + + results = job._system_call(f'find {self.run_dir}') + lines = results['stdout'].split('\n') + lines = [re.sub(r'^.*?sequence_processing_pipeline\/', '', x) + for x in lines] + obs = [x for x in lines if x] + obs.sort() + + exp = ['b197f317-1c06-4619-9af3-65721149c1e8/210518_A00953_0305_TEST', + 'b197f317-1c06-4619-9af3-65721149c1e8/210518_A00953_0305_TEST/' + 'ConvertJob', + 'b197f317-1c06-4619-9af3-65721149c1e8/210518_A00953_0305_TEST/' + 'ConvertJob/Reports', + 'b197f317-1c06-4619-9af3-65721149c1e8/210518_A00953_0305_TEST/' + 'QCJob', + 'b197f317-1c06-4619-9af3-65721149c1e8/210518_A00953_0305_TEST/' + 'QCJob/Project1', + 'b197f317-1c06-4619-9af3-65721149c1e8/210518_A00953_0305_TEST/' + 'QCJob/Project1/fastp_reports_dir', + 'b197f317-1c06-4619-9af3-65721149c1e8/210518_A00953_0305_TEST/' + 'QCJob/Project1/fastp_reports_dir/json', + 'b197f317-1c06-4619-9af3-65721149c1e8/210518_A00953_0305_TEST/' + 'QCJob/Project1/filtered_sequences'] + + self.assertEquals(obs, exp) + + def test_get_prep_file_paths(self): + self.maxDiff = None + sample_sheet_path = join(self.package_root, 'tests', 'data', + 'good-sample-sheet.csv') + + # create a sample Job object + job = GenPrepFileJob(self.run_dir, + self.convert_job_path, + self.qc_job_path, + join(self.working_directory_root, 'OutputPath'), + sample_sheet_path, + 'seqpro', + [], + 'abcdabcdabcdabcdabcdabcdabcdabcd', + self.reports_path) + + # We cannot run the object and test the output that is returned from + # seqpro, but we can test the helper method against canned stdout and + # verify the results. + stdout = ('1111\tmetagenomics_pooling_notebook/metapool/tests/VFTEST/' + '200318_A00953_0082_AH5TWYDSXY.Project_1111.1.tsv\n' + '1111\tmetagenomics_pooling_notebook/metapool/tests/VFTEST/' + '200318_A00953_0082_AH5TWYDSXY.Project_1111.3.tsv\n' + '666\tmetagenomics_pooling_notebook/metapool/tests/VFTEST/' + '200318_A00953_0082_AH5TWYDSXY.Trojecp_666.3.tsv') + + obs = job._get_prep_file_paths(stdout) + + exp = {'1111': [('metagenomics_pooling_notebook/metapool/tests/VFTEST' + '/200318_A00953_0082_AH5TWYDSXY.Project_1111.1.tsv'), + ('metagenomics_pooling_notebook/metapool/tests/VFTEST' + '/200318_A00953_0082_AH5TWYDSXY.Project_1111.3.tsv')], + '666': [('metagenomics_pooling_notebook/metapool/tests/VFTEST' + '/200318_A00953_0082_AH5TWYDSXY.Trojecp_666.3.tsv')]} + + self.assertDictEqual(obs, exp) + + +class TestReplication(unittest.TestCase): + def setUp(self): + self.package_root = '' + self.qiita_job_id = 'b197f317-1c06-4619-9af3-65721149c1e8' + self.working_directory_root = join(self.package_root, + self.qiita_job_id) + try: + shutil.rmtree(self.working_directory_root) + except FileNotFoundError: + # Clean up test directory just in case + pass + makedirs(self.working_directory_root) + self.run_id = '210518_A00953_0305_TEST' + self.run_dir = join(self.working_directory_root, self.run_id) + self.convert_job_path = join(self.run_dir, 'ConvertJob') + self.reports_path = join(self.convert_job_path, 'Reports') + makedirs(self.reports_path, exist_ok=True) + self.qc_job_path = join(self.run_dir, 'QCJob') + self.project_list = ['Project1'] + makedirs(join(self.qc_job_path, self.project_list[0], + 'filtered_sequences')) + makedirs(join(self.qc_job_path, self.project_list[0], + 'fastp_reports_dir', 'json')) + + def tearDown(self): + shutil.rmtree(self.working_directory_root) + + def test_sample_sheet_replicate_file_creation(self): + # since the GenPrepFileJob tests do not run seqpro (this is done in + # qp-klp tests), the main objective of these tests is to confirm that + # given a known good input, the right methods from metapool are called + # and the correct number of output files are created. + sample_sheet_path = join(self.package_root, 'tests', 'data', + 'good_sheet_w_replicates.csv') + + job = GenPrepFileJob(self.run_dir, + self.convert_job_path, + self.qc_job_path, + join(self.working_directory_root, 'OutputPath'), + sample_sheet_path, + 'seqpro', + [], + 'abcdabcdabcdabcdabcdabcdabcdabcd', + self.reports_path) + + exp = [['seqpro', '--verbose', + ('b197f317-1c06-4619-9af3-' + '65721149c1e8/OutputPath/GenPrepFileJob/210518_A00953_0305' + '_TEST'), + ('"b197f317-1c06-4619-9af3-' + '65721149c1e8/OutputPath/GenPrepFileJob/' + 'replicate_sheet_1.csv"'), + ('b197f317-1c06-4619-9af3-' + '65721149c1e8/OutputPath/GenPrepFileJob/PrepFiles/1')], + ['seqpro', '--verbose', + ('b197f317-1c06-4619-9af3-' + '65721149c1e8/OutputPath/GenPrepFileJob/210518_A00953_0305' + '_TEST'), + ('"b197f317-1c06-4619-9af3-' + '65721149c1e8/OutputPath/GenPrepFileJob/' + 'replicate_sheet_2.csv"'), + ('b197f317-1c06-4619-9af3-' + '65721149c1e8/OutputPath/GenPrepFileJob/PrepFiles/2')], + ['seqpro', '--verbose', + 'b197f317-1c06-4619-9af3-' + '65721149c1e8/OutputPath/GenPrepFileJob/210518_A00953_0305' + '_TEST', + '"b197f317-1c06-4619-9af3-' + '65721149c1e8/OutputPath/GenPrepFileJob/' + 'replicate_sheet_3.csv"', + 'b197f317-1c06-4619-9af3-' + '65721149c1e8/OutputPath/GenPrepFileJob/PrepFiles/3']] + + self.assertEqual(job.commands, exp) + + def test_pre_prep_replicate_file_creation(self): + # since the GenPrepFileJob tests do not run seqpro (this is done in + # qp-klp tests), the main objective of these tests is to confirm that + # given a known good input, the right methods from metapool are called + # and the correct number of output files are created. + sample_sheet_path = join(self.package_root, 'tests', 'data', + 'pre_prep_w_replicates.csv') + + job = GenPrepFileJob(self.run_dir, + self.convert_job_path, + self.qc_job_path, + join(self.working_directory_root, + 'OutputPath'), + sample_sheet_path, + 'seqpro', + [], + 'abcdabcdabcdabcdabcdabcdabcdabcd', + self.reports_path, + is_amplicon=True) + + exp = [['seqpro', '--verbose', + ('b197f317-1c06-4619-9af3-' + '65721149c1e8/OutputPath/GenPrepFileJob/210518_A00953_0305' + '_TEST'), + ('"b197f317-1c06-4619-9af3-' + '65721149c1e8/OutputPath/GenPrepFileJob/' + 'replicate_sheet_1.txt"'), + ('b197f317-1c06-4619-9af3-' + '65721149c1e8/OutputPath/GenPrepFileJob/PrepFiles/1')], + ['seqpro', '--verbose', + ('b197f317-1c06-4619-9af3-' + '65721149c1e8/OutputPath/GenPrepFileJob/210518_A00953_0305' + '_TEST'), + ('"b197f317-1c06-4619-9af3-' + '65721149c1e8/OutputPath/GenPrepFileJob/' + 'replicate_sheet_2.txt"'), + ('b197f317-1c06-4619-9af3-' + '65721149c1e8/OutputPath/GenPrepFileJob/PrepFiles/2')], + ['seqpro', '--verbose', + ('b197f317-1c06-4619-9af3-' + '65721149c1e8/OutputPath/GenPrepFileJob/210518_A00953_0305' + '_TEST'), + ('"b197f317-1c06-4619-9af3-' + '65721149c1e8/OutputPath/GenPrepFileJob/' + 'replicate_sheet_3.txt"'), + ('b197f317-1c06-4619-9af3-' + '65721149c1e8/OutputPath/GenPrepFileJob/PrepFiles/3')]] + + self.assertEqual(job.commands, exp) + + +if __name__ == '__main__': + unittest.main() diff --git a/tests/test_Job.py b/tests/test_Job.py new file mode 100644 index 00000000..be5b0191 --- /dev/null +++ b/tests/test_Job.py @@ -0,0 +1,308 @@ +import unittest +from sequence_processing_pipeline.Job import Job +from sequence_processing_pipeline.PipelineError import PipelineError +from os.path import abspath, join, dirname, split, isdir, exists +from os import makedirs, chmod, remove +from functools import partial +from shutil import rmtree, copyfile +import re + + +class TestJob(unittest.TestCase): + def setUp(self): + self.remove_these = [] + + def tearDown(self): + for some_path in self.remove_these: + if isdir(some_path): + rmtree(some_path) + else: + remove(some_path) + + def test_system_call(self): + package_root = abspath('./') + self.path = partial(join, package_root, 'tests', 'data') + + output_dir = self.path('my_output_dir') + + job = Job(self.path('211021_A00000_0000_SAMPLE'), + output_dir, '200nnn_xnnnnn_nnnn_xxxxxxxxxx', + ['ls'], 1000, None) + + self.assertTrue(job._which('ls') in ['/bin/ls', '/usr/bin/ls']) + + with self.assertRaises(PipelineError) as e: + job._file_check('/does/not/exist') + + self.assertRegex(str(e.exception), + r"^file '/does/not/exist' does not exist.") + + obs = job._find_files(package_root) + obs = [re.sub(r'^.*?/sequence_processing_pipeline', + r'sequence_processing_pipeline', x) for x in obs] + self.assertIn('sequence_processing_pipeline/NuQCJob.py', obs) + + callback_results = [] + + def my_callback(jid=None, status=None): + callback_results.append((jid, status)) + + obs = job._system_call('ls ' + join(package_root, 'tests', 'bin'), + callback=my_callback) + + exp = ['bcl-convert\nbcl2fastq\nfake_squeue.py\nfastqc\n'] + + self.assertIn(obs['stdout'], exp) + self.assertEqual(obs['stderr'], '') + self.assertEqual(obs['return_code'], 0) + + for item in callback_results: + self.assertTrue(isinstance(item[0], int)) + self.assertIn(item[1], ['RUNNING', 'COMPLETED']) + + with self.assertRaises(PipelineError) as e: + job._system_call('error') + + self.assertRegex(str(e.exception), (r'^Execute command-line statement' + r' failure:\nCommand: ' + r'error\nreturn code:' + r' 127')) + + self.remove_these.append(output_dir) + + def test_group_commands(self): + package_root = abspath('./') + self.path = partial(join, package_root, 'tests', 'data') + + job = Job(self.path('211021_A00000_0000_SAMPLE'), + self.path('my_output_dir'), '200nnn_xnnnnn_nnnn_xxxxxxxxxx', + ['ls'], 2, None) + + cmds = list(range(1, 8)) + cmds = [str(x) for x in cmds] + results = job._group_commands(cmds) + self.assertEqual(results[0], '1;3;5;7') + self.assertEqual(results[1], '2;4;6') + self.assertEqual(len(results), 2) + + def test_extract_project_names_from_fastq_dir(self): + package_root = abspath('./') + base_path = partial(join, package_root, 'tests', 'data') + + dummy_fastqs = [ + "ConvertJob/NPH_15288/359180337_S27_L007_R1_001.fastq.gz", + "ConvertJob/NPH_15288/BLANK2_NPH_2_E_S13_L007_R1_001.fastq.gz", + "ConvertJob/Undetermined_S0_L007_R2_001.fastq.gz", + ("NuQCJob/only-adapter-filtered/NPH_15288/" + "359180398_S9_L007_R1_001.fastq.gz"), + ("NuQCJob/only-adapter-filtered/NPH_15288/" + "BLANK2_NPH_9_E_S69_L007_R2_001.fastq.gz"), + ("NuQCJob/NPH_15288/filtered_sequences/" + "359180396_S7_L007_R2_001.trimmed.fastq.gz")] + + self.remove_these.append(base_path('7b9d7d9c-2cd4-4d54-94ac-' + '40e07a713585')) + + for fastq in dummy_fastqs: + full_path = base_path('7b9d7d9c-2cd4-4d54-94ac-40e07a713585', + fastq) + makedirs(dirname(full_path), exist_ok=True) + with open(full_path, 'w') as f: + f.write("This is a dummy file.") + + # fake a basic Job() object with enough metadata to test + # extract_project_names_from_fastq_dir(). + job = Job(base_path('211021_A00000_0000_SAMPLE'), + base_path('7b9d7d9c-2cd4-4d54-94ac-40e07a713585'), + '200nnn_xnnnnn_nnnn_xxxxxxxxxx', ['ls'], 2, None) + + # results from ConvertJob and NuQCJob should be equal. + tmp = base_path('7b9d7d9c-2cd4-4d54-94ac-40e07a713585', 'ConvertJob') + obs = job.extract_project_names_from_fastq_dir(tmp) + self.assertEqual(obs, ['NPH_15288']) + + tmp = base_path('7b9d7d9c-2cd4-4d54-94ac-40e07a713585', 'NuQCJob') + obs = job.extract_project_names_from_fastq_dir(tmp) + self.assertEqual(obs, ['NPH_15288']) + + def test_query_slurm(self): + package_root = abspath('./') + base_path = partial(join, package_root, 'tests', 'data') + + # set up a fake job so that we can test the query_jobs() method. + # it doesn't matter what the parameters are so long as the job + # passes initialization. + job = Job(base_path('211021_A00000_0000_SAMPLE'), + base_path('7b9d7d9c-2cd4-4d54-94ac-40e07a713585'), + '200nnn_xnnnnn_nnnn_xxxxxxxxxx', ['ls'], 2, None) + + # locate python binary path + # we have a python script called fake_squeue.py that can simulate + # repeated calls to squeue. It does this by generating a fake random + # set of array job ids for each job id passed to it and records their + # state in my_state.json. Each array job is set to change state from + # RUNNING to either COMPLETED or FAILED between three to seven squeue + # calls. The choice of which job-ids will succeed or fail, as is which + # individual array-ids will succeed or fail is random. + python_path = split(job._which('python'))[0] + squeue_path = join(python_path, 'squeue') + foo = join(package_root, 'tests', 'bin', 'fake_squeue.py') + + # place the fake squeue file in a place that's known to be in the + # PATH. Make sure this file is removed after this test is complete. + # Also make sure the saved state file is removed. + copyfile(foo, squeue_path) + chmod(squeue_path, 0o755) + self.remove_these.append(squeue_path) + self.remove_these.append(join(package_root, 'tests', 'bin', + 'my_state.json')) + + job_ids = ['1234567', '1234568', '1234569', '1234570'] + jobs = job._query_slurm(job_ids) + + # jobs is a dictionary of unique array_ids and/or job-ids for non- + # array jobs. The faked squeue reports anywhere between five and + # fifteen array jobs for a given job-id. After the first invocation + # all processes should be in the 'RUNNING' state. + # e.g.: "1234567_1": "RUNNING" + + for j in jobs: + self.assertEqual(jobs[j], 'RUNNING') + if '_' in j: + jid, aid = j.split('_') + else: + jid = j + aid = None + + # assert the job id component of the array-id is a valid job id. + self.assertIn(jid, job_ids) + + if aid: + # assert the array-id component of the array-id is between 0 + # and 15 as defined in the fake squeue script. + aid = int(aid) + self.assertLess(aid, 15) + self.assertGreaterEqual(aid, 0) + + def test_query_slurm_single_job(self): + # perform test_query_slurm() but with a single job only. + package_root = abspath('./') + base_path = partial(join, package_root, 'tests', 'data') + + # set up a fake job so that we can test the query_jobs() method. + # it doesn't matter what the parameters are so long as the job + # passes initialization. + job = Job(base_path('211021_A00000_0000_SAMPLE'), + base_path('7b9d7d9c-2cd4-4d54-94ac-40e07a713585'), + '200nnn_xnnnnn_nnnn_xxxxxxxxxx', ['ls'], 2, None) + + # locate python binary path + # we have a python script called fake_squeue.py that can simulate + # repeated calls to squeue. It does this by generating a fake random + # set of array job ids for each job id passed to it and records their + # state in my_state.json. Each array job is set to change state from + # RUNNING to either COMPLETED or FAILED between three to seven squeue + # calls. The choice of which job-ids will succeed or fail, as is which + # individual array-ids will succeed or fail is random. + python_path = split(job._which('python'))[0] + squeue_path = join(python_path, 'squeue') + foo = join(package_root, 'tests', 'bin', 'fake_squeue.py') + + # place the fake squeue file in a place that's known to be in the + # PATH. Make sure this file is removed after this test is complete. + # Also make sure the saved state file is removed. + copyfile(foo, squeue_path) + chmod(squeue_path, 0o755) + self.remove_these.append(squeue_path) + self.remove_these.append(join(package_root, 'tests', 'bin', + 'my_state.json')) + + job_ids = ['1234567'] + jobs = job._query_slurm(job_ids) + + # jobs is a dictionary of unique array_ids and/or job-ids for non- + # array jobs. The faked squeue reports anywhere between five and + # fifteen array jobs for a given job-id. After the first invocation + # all processes should be in the 'RUNNING' state. + # e.g.: "1234567_1": "RUNNING" + + for j in jobs: + self.assertEqual(jobs[j], 'RUNNING') + if '_' in j: + jid, aid = j.split('_') + else: + jid = j + aid = None + + # assert the job id component of the array-id is a valid job id. + self.assertIn(jid, job_ids) + + if aid: + # assert the array-id component of the array-id is between 0 + # and 15 as defined in the fake squeue script. + aid = int(aid) + self.assertLess(aid, 15) + self.assertGreaterEqual(aid, 0) + + def test_wait_on_job_ids(self): + package_root = abspath('./') + base_path = partial(join, package_root, 'tests', 'data') + + job = Job(base_path('211021_A00000_0000_SAMPLE'), + base_path('7b9d7d9c-2cd4-4d54-94ac-40e07a713585'), + '200nnn_xnnnnn_nnnn_xxxxxxxxxx', ['ls'], 2, None) + + python_path = split(job._which('python'))[0] + squeue_path = join(python_path, 'squeue') + foo = join(package_root, 'tests', 'bin', 'fake_squeue.py') + copyfile(foo, squeue_path) + chmod(squeue_path, 0o755) + self.remove_these.append(squeue_path) + self.remove_these.append(join(package_root, 'tests', 'bin', + 'my_state.json')) + + job_ids = ['1', '2', '3', '4'] + + # to shorten the test time, set polling_interval_in_seconds to be + # lower than one minute. + Job.polling_interval_in_seconds = 10 + results = job.wait_on_job_ids(job_ids) + + # calling query_slurm one more time after wait_on_job_ids() is called + # will technically advance the counter one more, which means that this + # doesn't confirm that wait_on_job_ids() doesn't return before EVERY + # single job is either COMPLETED or FAILED. However it does confirm + # that wait_on_job_ids() doesn't return once the FIRST completed array + # job is either COMPLETED or FAILED while others are still RUNNING. + # This was previously an issue. + obs = job._query_slurm(job_ids) + + for array_id in obs: + state = obs[array_id] + # w/out relying on states defined in Job, simply confirm all are + # either COMPLETED or FAILED. + self.assertIn(state, ['COMPLETED', 'FAILED']) + + # since wait_on_job_ids() now returns the same data structure as + # query_slurm(), they should be equal. + self.assertDictEqual(obs, results) + + def test_mark_completed_commands(self): + package_root = abspath('./') + self.path = partial(join, package_root, 'tests', 'data') + + job = Job(self.path('211021_A00000_0000_SAMPLE'), + self.path('my_output_dir'), '200nnn_xnnnnn_nnnn_xxxxxxxxxx', + ['ls'], 2, None) + + fp = join(job.output_path, 'job_completed') + + self.assertFalse(exists(fp)) + + job.mark_job_completed() + + self.assertTrue(exists(fp)) + + +if __name__ == '__main__': + unittest.main() diff --git a/tests/test_MultiQCJob.py b/tests/test_MultiQCJob.py new file mode 100644 index 00000000..2c163255 --- /dev/null +++ b/tests/test_MultiQCJob.py @@ -0,0 +1,180 @@ +import unittest +from os.path import join, exists +from functools import partial +from sequence_processing_pipeline.MultiQCJob import MultiQCJob +from sequence_processing_pipeline.PipelineError import JobFailedError +from os import makedirs, listdir +from shutil import rmtree, move + + +class TestMultiQCJob(unittest.TestCase): + def setUp(self): + self.maxDiff = None + package_root = '' + self.path = partial(join, package_root, 'tests', 'data') + self.qiita_job_id = 'abcdabcdabcdabcdabcdabcdabcdabcd' + self.output_path = self.path('output_dir2') + self.multiqc_log_path = join(self.output_path, 'logs') + self.raw_fastq_files_path = ('tests/data' + '/211021_A00000_0000_SAMPLE/Data/Fastq/p' + 'roject1') + self.processed_fastq_files_path = ('tests' + '/data/211021_A00000_0000_SAMPLE/sa' + 'mple-sequence-directory') + self.config_yml = join(package_root, 'multiqc-bclconvert-config.yaml') + self.qc_root_path = join(self.output_path, 'QCJob') + self.fastqc_root_path = join(self.output_path, 'FastQCJob') + makedirs(self.qc_root_path, exist_ok=True) + + base_path = join(self.output_path, 'MultiQCJob') + file_names = [] + makedirs(join(base_path, 'Feist_11661', 'trimmed_sequences'), + exist_ok=True) + makedirs(join(base_path, 'Gerwick_6123', 'filtered_sequences'), + exist_ok=True) + + file_names.append(join(base_path, + 'Feist_11661', + 'trimmed_sequences', + ('CDPH-SAL_Salmonella_Typhi_MDL-143_S1_L003_R1_' + '001.trimmed_fastqc.html'))) + + file_names.append(join(base_path, + 'Gerwick_6123', + 'filtered_sequences', + '3A_S169_L003_R2_001.trimmed_fastqc.html')) + + # write files out to disk + for file_name in file_names: + with open(file_name, 'w') as f2: + f2.write("This is a file.") + + # set up dummy logs + self.multiqc_log_path = join(self.output_path, "MultiQCJob", "logs") + makedirs(self.multiqc_log_path, exist_ok=True) + + log_files = { + 'slurm-9999999_35.out': ["---------------", + "Run details:", + ("hds-fe848a9e-c0e9-49d9-978d-" + "27565a314e8b 1908305 b2-018"), + "---------------", + "+ this", + "+ that", + "+ blah", + ("something error: Generic Standin Error" + " (GSE).")], + 'slurm-9999999_17.out': ["---------------", + "Run details:", + ("hds-fe848a9e-c0e9-49d9-978d-" + "27565a314e8b 1908305 b2-018"), + "---------------", + "+ this", + "+ that", + "+ blah", + ("something error: Another Standin Error" + " (ASE).")] + } + + for log_file in log_files: + fp = join(self.multiqc_log_path, log_file) + + with open(fp, 'w') as f: + lines = log_files[log_file] + for line in lines: + f.write(f"{line}\n") + + def tearDown(self): + rmtree(self.output_path) + + zero_path = join(self.raw_fastq_files_path, 'zero_files') + + if exists(zero_path): + for f in listdir(zero_path): + source = join(zero_path, f) + move(source, join(self.raw_fastq_files_path, f)) + + rmtree(zero_path) + + def test_generate_job_scripts(self): + job = MultiQCJob(self.qc_root_path, self.output_path, + self.raw_fastq_files_path.replace('/project1', ''), + self.processed_fastq_files_path, + 16, 16, + 'tests/bin/multiqc', + ['multiqc.2.0'], self.qiita_job_id, 'queue_name', 4, + 23, '8g', 30, self.fastqc_root_path, 1000, + "tests/data/multiqc-bclconvert-config.yaml", False) + + job_script_path = join(job.output_path, 'MultiQCJob.sh') + array_details_path = join(job.output_path, 'MultiQCJob.array-details') + self.assertEqual(exists(job_script_path), True) + self.assertEqual(exists(array_details_path), True) + + exp = ["#!/bin/bash", + "#SBATCH -J abcdabcdabcdabcdabcdabcdabcdabcd_MultiQCJob", + "#SBATCH -p queue_name", "#SBATCH -N 4", "#SBATCH -n 16", + "#SBATCH --time 23", "#SBATCH --mem 8gG", + "#SBATCH --array 1-1%30", "set -x", "set +e", + "set -o pipefail", "date", "hostname", + "echo ${SLURM_JOBID} ${SLURM_ARRAY_TASK_ID}", + "cd tests/data/output_dir2/" + "MultiQCJob", "", "module load multiqc.2.0", "", + "step=${SLURM_ARRAY_TASK_ID}", + "cmd0=$(head -n $step tests/data/" + "output_dir2/MultiQCJob/MultiQCJob.array-details | tail -n 1)", + "eval $cmd0", "echo \"Cmd Completed: $cmd0\" > logs/MultiQCJob_" + "$step.completed"] + + with open(job_script_path, 'r') as f: + obs = f.readlines() + obs = [x.strip() for x in obs] + + for a, b in zip(obs, exp): + self.assertEqual(a, b) + + exp = ["multiqc -c tests/data/multiqc-bclconvert-con" + "fig.yaml --fullnames --force -o t" + "ests/data/output_dir2/MultiQCJob/multiqc/project1"] + + with open(array_details_path, 'r') as f: + obs = f.readlines() + obs = [x.strip() for x in obs] + + for a, b in zip(obs, exp): + self.assertEqual(a, b) + + def test_error_msg_from_logs(self): + job = MultiQCJob(self.qc_root_path, self.output_path, + self.raw_fastq_files_path.replace('/project1', ''), + self.processed_fastq_files_path, + 16, 16, + 'tests/bin/multiqc', + ['multiqc.2.0'], self.qiita_job_id, 'queue_name', 4, + 23, '8g', 30, self.fastqc_root_path, 1000, + "tests/data/" + "multiqc-bclconvert-config.yaml", False) + + self.assertFalse(job is None) + + # an internal method to force submit_job() to raise a JobFailedError + # instead of submitting the job w/sbatch and waiting for a failed + # job w/squeue. + self.assertTrue(job._toggle_force_job_fail()) + + try: + job.run() + except JobFailedError as e: + # assert that the text of the original error message was + # preserved, while including known strings from each of the + # sample log-files. + print(str(e)) + self.assertIn('This job died.', str(e)) + self.assertIn('something error: Generic Standin Error (GSE)', + str(e)) + self.assertIn('something error: Another Standin Error (ASE)', + str(e)) + + +if __name__ == '__main__': + unittest.main() diff --git a/tests/test_NuQCJob.py b/tests/test_NuQCJob.py new file mode 100644 index 00000000..f34947d6 --- /dev/null +++ b/tests/test_NuQCJob.py @@ -0,0 +1,2310 @@ +import shutil +import unittest +from os.path import join, abspath, exists, dirname +from functools import partial +from sequence_processing_pipeline.NuQCJob import NuQCJob +from sequence_processing_pipeline.PipelineError import ( + PipelineError, + JobFailedError, +) +from os import makedirs, remove +from metapool import load_sample_sheet +from os import walk +import gzip + + +class TestNuQCJob(unittest.TestCase): + def setUp(self): + # adjustable test_root helps w/testing in different environments. + package_root = abspath("./") + self.path = partial(join, package_root, "tests", "data") + self.good_sample_sheet_path = self.path("good-sample-sheet.csv") + self.bad_sample_sheet_path = self.path( + "bad-sample-sheet-" "metagenomics.csv" + ) + self.bad_sheet_bools_path = self.path( + "bad-sample-sheet-" "bool-test.csv" + ) + self.mmi_db_paths = [self.path("mmi.db")] + self.project_list = [ + "NYU_BMS_Melanoma_13059", + "Feist_11661", + "Gerwick_6123", + ] + self.qiita_job_id = "abcdabcdabcdabcdabcdabcdabcdabcd" + self.maxDiff = None + self.output_path = self.path("output_dir") + self.fastq_root_path = join(self.output_path, "ConvertJob") + self.tmp_file_path = self.path("tmp-sample-sheet.csv") + self.movi_path = self.path("/home/user/Movi/build/movi-default") + self.gres_value = 4 + self.pmls_path = self.path("pmls.py") + + try: + shutil.rmtree(self.output_path) + except FileNotFoundError: + # sample_run_dir is created during testing. we don't mind if it + # doesn't already exist, but any leftovers from previous runs + # need to be removed. + pass + + sheet = load_sample_sheet(self.good_sample_sheet_path) + + if not sheet.validate_and_scrub_sample_sheet(): + raise ValueError("'%s' is not a valid sample-sheet") + + sample_ids = [] + for sample in sheet.samples: + sample_ids.append((sample["Sample_ID"], sample["Sample_Project"])) + + self.fastq_path = partial(join, self.output_path, "ConvertJob") + for project_name in self.project_list: + # strip the qiita-id from a project-name in order to test + # NuQCJob's ability to match project directories for both new and + # legacy project folders w/in a run-directory. + tmp = "Feist" if project_name == "Feist_11661" else project_name + sample_path = self.fastq_path(tmp) + makedirs(sample_path, exist_ok=True) + + ids = [ + x[0] + for x in filter(lambda c: c[1] == project_name, sample_ids) + ] + + for id in ids: + fr_fp = join(sample_path, f"{id}_R1_001.fastq.gz") + rr_fp = join(sample_path, f"{id}_R2_001.fastq.gz") + + with gzip.open(fr_fp, "wb") as f: + f.write(b"@my_seq_id BX:Z:TATGACACATGCGGCCCT\n") + with gzip.open(rr_fp, "wb") as f: + f.write(b"@my_seq_id BX:Z:TATGACACATGCGGCCCT\n") + + self.feist_ids = [ + "JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69", + "JM-Metabolic__GN0_2148", + "JM-Metabolic__GN0_2183", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400", + "CDPH-SAL_Salmonella_Typhi_MDL-144", + "P21_E_coli_ELI361", + "JBI_KHP_HGL_023", + "Pputida_PALE__HGL_Pputida_158", + "CDPH-SAL_Salmonella_Typhi_MDL-166", + "CDPH-SAL_Salmonella_Typhi_MDL-147", + "JM-Metabolic__GN03252", + "stALE_E_coli_A11_F43_I1_R1", + "P21_E_coli_ELI355", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50", + "stALE_E_coli_A14_F42_I1_R1", + "Deoxyribose_PALE_ALE__MG1655_BOP27_10_51", + "JM-Metabolic__GN0_2099", + "JM-Metabolic__GN02657", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22", + "stALE_E_coli_A1_F21_I1_R1", + "JM-Metabolic__GN0_2005", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421", + "Pputida_TALE__HGL_Pputida_129", + "Deoxyribose_PALE_ALE__MG1655_BOP27_10_28", + "Pputida_TALE__HGL_Pputida_113", + "JM-Metabolic__GN02487", + "P21_E_coli_ELI348", + "Deoxyribose_PALE_ALE__MG1655_Lib4_26_27", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385", + "stALE_E_coli_A10_F43_I1_R1", + "stALE_E_coli_A11_F119_I1_R1", + "JM-Metabolic__GN03132", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381", + "Pputida_TALE__HGL_Pputida_131", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044", + "Pputida_TALE__HGL_Pputida_122", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419", + "Pputida_TALE__HGL_Pputida_114", + "P21_E_coli_ELI366", + "Pputida_TALE__HGL_Pputida_140", + "JBI_KHP_HGL_026", + "Deoxyribose_PALE_ALE__MG1655_BOP27_6_21", + "stALE_E_coli_A9_F21_I1_R1", + "P21_E_coli_ELI359", + "JM-Metabolic__GN04306", + "Pputida_JBEI__HGL_Pputida_108_BP7", + "Deoxyribose_PALE_ALE__MG1655_Lib4_20_71", + "P21_E_coli_ELI345", + "Deoxyribose_PALE_ALE__MG1655_Lib4_20_43", + "Deoxyribose_PALE_ALE__MG1655_Lib4_18_59", + "stALE_E_coli_A12_F136_I1_R1", + "JM-Metabolic__GN04540", + "Pputida_PALE__HGL_Pputida_153", + "CDPH-SAL_Salmonella_Typhi_MDL-156", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36", + "RMA_KHP_rpoS_Mage_Q97L", + "stALE_E_coli_A13_F42_I1_R1", + "JM-Metabolic__GN02766", + "stALE_E_coli_A7_F42_I1_R1", + "Deoxyribose_PALE_ALE__MG1655_Lib4_22_28", + "Pputida_TALE__HGL_Pputida_144", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520", + "Pputida_TALE__HGL_Pputida_117", + "stALE_E_coli_A5_F21_I1_R1", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375", + "stALE_E_coli_A4_F42_I1_R1", + "Deoxyribose_PALE_ALE__MG1655_Lib4_22_16", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61", + "Pputida_TALE__HGL_Pputida_116", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353", + "JM-Metabolic__GN02769", + "JM-Metabolic__GN04488", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403", + "Pputida_PALE__HGL_Pputida_149", + "JM-Metabolic__GN0_2290", + "JM-Metabolic__GN02787", + "JM-Metabolic__GN02449", + "JBI_KHP_HGL_030_Amitesh_soxR_oxyR", + "Pputida_JBEI__HGL_Pputida_110_M2", + "JM-Metabolic__GN0_2169", + "stALE_E_coli_A8_F42_I1_R1", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103", + "CDPH-SAL_Salmonella_Typhi_MDL-148", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366", + "Pputida_TALE__HGL_Pputida_125", + "stALE_E_coli_A11_F21_I1_R1", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25", + "CDPH-SAL_Salmonella_Typhi_MDL-150", + "stALE_E_coli_A15_F21_I1_R1", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418", + "Pputida_TALE__HGL_Pputida_130", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373", + "CDPH-SAL_Salmonella_Typhi_MDL-162", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23", + "Deoxyribose_PALE_ALE__MG1655_Lib4_32_56", + "CDPH-SAL_Salmonella_Typhi_MDL-160", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354", + "stALE_E_coli_A14_F133_I1_R1", + "Pputida_PALE__HGL_Pputida_173", + "JM-Metabolic__GN0_2175", + "stALE_E_coli_A13_F20_I1_R1", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395", + "stALE_E_coli_A17_F118_I1_R1", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64", + "CDPH-SAL_Salmonella_Typhi_MDL-154", + "Pputida_PALE__HGL_Pputida_156", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326", + "Deoxyribose_PALE_ALE__MG1655_Lib4_32_6", + "JM-Metabolic__GN0_2215", + "Pputida_PALE__HGL_Pputida_162", + "Pputida_TALE__HGL_Pputida_143", + "stALE_E_coli_A12_F21_I1_R1", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382", + "JBI_KHP_HGL_022", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524", + "Deoxyribose_PALE_ALE__MG1655_BOP27_10_13", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376", + "Deoxyribose_PALE_ALE__MG1655_Lib4_28_53", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473", + "JM-Metabolic__GN0_2380", + "RMA_KHP_rpoS_Mage_Q97D", + "JBI_KHP_HGL_025", + "Pputida_TALE__HGL_Pputida_135", + "stALE_E_coli_A12_F43_I1_R1", + "Deoxyribose_PALE_ALE__MG1655_Lib4_26_69", + "JM-Metabolic__GN0_2172", + "stALE_E_coli_A15_F42_I1_R1", + "JM-Metabolic__GN0_2007", + "Pputida_PALE__HGL_Pputida_154", + "stALE_E_coli_A16_F134_I1_R1", + "CDPH-SAL_Salmonella_Typhi_MDL-149", + "P21_E_coli_ELI352", + "CDPH-SAL_Salmonella_Typhi_MDL-164", + "Pputida_PALE__HGL_Pputida_167", + "Deoxyribose_PALE_ALE__MG1655_Lib4_30_7", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357", + "stALE_E_coli_A4_F21_I1_R1", + "JM-Metabolic__GN02748", + "JBI_KHP_HGL_021", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102", + "JM-Metabolic__GN05002", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25", + "JM-Metabolic__GN02590", + "stALE_E_coli_A8_F20_I1_R1", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392", + "stALE_E_coli_A6_F21_I1_R1", + "JM-Metabolic__GN0_2317", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364", + "Pputida_TALE__HGL_Pputida_139", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388", + "Deoxyribose_PALE_ALE__MG1655_Lib4_22_52", + "P21_E_coli_ELI364", + "Pputida_PALE__HGL_Pputida_166", + "Pputida_PALE__HGL_Pputida_175", + "Pputida_PALE__HGL_Pputida_164", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330", + "CDPH-SAL_Salmonella_Typhi_MDL-143", + "Pputida_PALE__HGL_Pputida_146", + "Pputida_TALE__HGL_Pputida_121", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397", + "Deoxyribose_PALE_ALE__MG1655_Lib4_20_16", + "P21_E_coli_ELI350", + "Pputida_PALE__HGL_Pputida_161", + "RMA_KHP_rpoS_Mage_Q97E", + "stALE_E_coli_A5_F42_I1_R1", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704", + "Pputida_PALE__HGL_Pputida_176", + "Pputida_TALE__HGL_Pputida_137", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409", + "JM-Metabolic__GN04563", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394", + "Pputida_PALE__HGL_Pputida_172", + "P21_E_coli_ELI367", + "JM-Metabolic__GN04014", + "CDPH-SAL_Salmonella_Typhi_MDL-146", + "Deoxyribose_PALE_ALE__MG1655_Lib4_28_28", + "Pputida_PALE__HGL_Pputida_160", + "CDPH-SAL_Salmonella_Typhi_MDL-158", + "P21_E_coli_ELI363", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523", + "JM-Metabolic__GN02567", + "Pputida_JBEI__HGL_Pputida_111_M5", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417", + "CDPH-SAL_Salmonella_Typhi_MDL-155", + "Pputida_TALE__HGL_Pputida_133", + "Pputida_PALE__HGL_Pputida_145", + "Pputida_JBEI__HGL_Pputida_107_BP6", + "P21_E_coli_ELI368", + "JM-Metabolic__GN02531", + "JM-Metabolic__GN0_2165", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355", + "JM-Metabolic__GN02446", + "Deoxyribose_PALE_ALE__MG1655_Lib4_24_24", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135", + "CDPH-SAL_Salmonella_Typhi_MDL-165", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24", + "Pputida_TALE__HGL_Pputida_132", + "stALE_E_coli_A10_F131_I1_R1", + "stALE_E_coli_A17_F21_I1_R1", + "JM-Metabolic__GN02424", + "JM-Metabolic__GN02529", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727", + "Pputida_TALE__HGL_Pputida_119", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378", + "CDPH-SAL_Salmonella_Typhi_MDL-157", + "JM-Metabolic__GN0_2354", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407", + "JBI_KHP_HGL_029_Amitesh_oxyR", + "JM-Metabolic__GN04094", + "Pputida_PALE__HGL_Pputida_170", + "CDPH-SAL_Salmonella_Typhi_MDL-159", + "Pputida_TALE__HGL_Pputida_118", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522", + "Deoxyribose_PALE_ALE__MG1655_BOP27_4_48", + "JM-Metabolic__GN03409", + "Pputida_TALE__HGL_Pputida_120", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329", + "P21_E_coli_ELI358", + "P21_E_coli_ELI344", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46", + "stALE_E_coli_A15_F117_I1_R1", + "Pputida_PALE__HGL_Pputida_163", + "Pputida_TALE__HGL_Pputida_112", + "JM-Metabolic__GN05377", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50", + "stALE_E_coli_A7_F21_I1_R1", + "stALE_E_coli_A9_F44_I1_R1", + "JM-Metabolic__GN0_2009", + "Pputida_PALE__HGL_Pputida_152", + "CDPH-SAL_Salmonella_Typhi_MDL-152", + "JM-Metabolic__GN04682", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63", + "JM-Metabolic__GN0_2277", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525", + "RMA_KHP_rpoS_Mage_Q97N", + "Pputida_TALE__HGL_Pputida_128", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377", + "CDPH-SAL_Salmonella_Typhi_MDL-153", + "P21_E_coli_ELI349", + "Pputida_PALE__HGL_Pputida_150", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519", + "Deoxyribose_PALE_ALE__MG1655_Lib4_18_35", + "Pputida_PALE__HGL_Pputida_151", + "JBI_KHP_HGL_027", + "JBI_KHP_HGL_028_Amitesh_soxR", + "stALE_E_coli_A3_F40_I1_R1", + "CDPH-SAL_Salmonella_Typhi_MDL-168", + "JM-Metabolic__GN0_2404", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078", + "stALE_E_coli_A2_F21_I1_R1", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368", + "Pputida_TALE__HGL_Pputida_134", + "Pputida_TALE__HGL_Pputida_141", + "stALE_E_coli_A16_F20_I1_R1", + "CDPH-SAL_Salmonella_Typhi_MDL-145", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391", + "JM-Metabolic__GN05367", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517", + "JM-Metabolic__GN0_2375", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420", + "P21_E_coli_ELI365", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41", + "JM-Metabolic__GN0_2337", + "Deoxyribose_PALE_ALE__MG1655_Lib4_32_20", + "Deoxyribose_PALE_ALE__MG1655_BOP27_4_14", + "P21_E_coli_ELI354", + "Deoxyribose_PALE_ALE__MG1655_BOP27_4_23", + "Deoxyribose_PALE_ALE__MG1655_Lib4_28_13", + "Pputida_PALE__HGL_Pputida_171", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518", + "JM-Metabolic__GN02501", + "Pputida_TALE__HGL_Pputida_138", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387", + "CDPH-SAL_Salmonella_Typhi_MDL-167", + "CDPH-SAL_Salmonella_Typhi_MDL-161", + "Pputida_PALE__HGL_Pputida_168", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367", + "stALE_E_coli_A3_F18_I1_R1", + "Deoxyribose_PALE_ALE__MG1655_Lib4_30_60", + "Pputida_TALE__HGL_Pputida_124", + "Pputida_TALE__HGL_Pputida_142", + "JM-Metabolic__GN04255", + "stALE_E_coli_A6_F43_I1_R1", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328", + "stALE_E_coli_A14_F20_I1_R1", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370", + "stALE_E_coli_A18_F130_I1_R1", + "Pputida_PALE__HGL_Pputida_169", + "P21_E_coli_ELI369", + "P21_E_coli_ELI347", + "stALE_E_coli_A13_F121_I1_R1", + "JM-Metabolic__GN0_2393", + "Deoxyribose_PALE_ALE__MG1655_Lib4_30_22", + "P21_E_coli_ELI362", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402", + "JBI_KHP_HGL_024", + "stALE_E_coli_A18_F18_I1_R1", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356", + "JM-Metabolic__GN0_2094", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21", + "stALE_E_coli_A18_F39_I1_R1", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404", + "Pputida_PALE__HGL_Pputida_157", + "P21_E_coli_ELI351", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386", + "Pputida_PALE__HGL_Pputida_148", + "Deoxyribose_PALE_ALE__MG1655_BOP27_6_35", + "P21_E_coli_ELI353", + "Pputida_PALE__HGL_Pputida_147", + "JM-Metabolic__GN05128", + "Pputida_PALE__HGL_Pputida_174", + "Pputida_TALE__HGL_Pputida_115", + "Pputida_PALE__HGL_Pputida_159", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485", + "stALE_E_coli_A4_F21_I1_R2", + "JM-Metabolic__GN04665", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371", + "CDPH-SAL_Salmonella_Typhi_MDL-163", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327", + "stALE_E_coli_A16_F42_I1_R1", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374", + "JM-Metabolic__GN03218", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62", + "Pputida_PALE__HGL_Pputida_155", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153", + "Deoxyribose_PALE_ALE__MG1655_Lib4_24_9", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384", + "JM-Metabolic__GN05109", + "JBI_KHP_HGL_031_Amitesh_rpoS", + "CDPH-SAL_Salmonella_Typhi_MDL-151", + "JM-Metabolic__GN04428", + "JM-Metabolic__GN02514", + "Pputida_JBEI__HGL_Pputida_109_BP8", + "JM-Metabolic__GN0_2254", + "Deoxyribose_PALE_ALE__MG1655_Lib4_26_6", + "Deoxyribose_PALE_ALE__MG1655_Lib4_18_19", + "Pputida_TALE__HGL_Pputida_123", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405", + "P21_E_coli_ELI357", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369", + "Pputida_TALE__HGL_Pputida_136", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521", + "Pputida_PALE__HGL_Pputida_165", + "Pputida_TALE__HGL_Pputida_127", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57", + "stALE_E_coli_A10_F21_I1_R1", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516", + "Deoxyribose_PALE_ALE__MG1655_Lib4_24_52", + "Pputida_TALE__HGL_Pputida_126", + "JM-Metabolic__GN04612", + ] + + self.gerwick_ids = ["5B", "3A", "6A", "8A", "4A", "7A", "GFR", "ISB"] + + self.nyu_ids = [ + "22_001_710_503_791_00", + "22_001_801_552_503_00", + "AP006367B02", + "AP029018B01", + "AP032412B04", + "AP032413B04", + "AP046324B02", + "AP046327B02", + "AP062219B03", + "AP065292B01", + "AP103463B01", + "AP173299B04", + "AP173301B04", + "AP173305B04", + "AP223470B01", + "AP298002B02", + "AP309872B03", + "AP324642B04", + "AP470859B01", + "AP481403B02", + "AP531397B04", + "AP549678B01", + "AP549681B02", + "AP568785B04", + "AP568787B02", + "AP581451B02", + "AP616837B04", + "AP668628B04", + "AP668631B04", + "AP687591B04", + "AP696363B02", + "AP732307B04", + "AP744361A02", + "AP745799A04", + "AP771472A04", + "AP780167B02", + "AP787247B04", + "AP795068B04", + "AP891020A04", + "AP905750A02", + "AP911328B01", + "AP953594A02", + "AP959450A03", + "AP967057A04", + "C14", + "C18", + "C20", + "C3", + "C5", + "C6", + "C9", + "EP001624B01", + "EP001625B01", + "EP012991B03", + "EP023801B04", + "EP023808B02", + "EP032410B02", + "EP032412B02", + "EP043583B01", + "EP054632B01", + "EP061002B01", + "EP073160B01", + "EP073209B02", + "EP073216B01", + "EP087938B02", + "EP090129B04", + "EP112567B02", + "EP121011B01", + "EP121013B01", + "EP128904B02", + "EP128910B01", + "EP159692B04", + "EP159695B01", + "EP163771B01", + "EP182060B03", + "EP182065B04", + "EP182243B02", + "EP182346B04", + "EP184255B04", + "EP190307B01", + "EP202095B04", + "EP202452B01", + "EP207036B01", + "EP207041B01", + "EP207042B04", + "EP212214B01", + "EP216516B04", + "EP230245B01", + "EP238034B01", + "EP244360B01", + "EP244366B01", + "EP256644B01", + "EP256645B01", + "EP260543B04", + "EP260544B04", + "EP273332B04", + "EP282107B01", + "EP282108B01", + "EP282276B04", + "EP291979B04", + "EP291980B04", + "EP305735B04", + "EP316863B03", + "EP320438B01", + "EP333541B04", + "EP337325B04", + "EP337425B01", + "EP339053B02", + "EP339057B02", + "EP339059B02", + "EP339061B02", + "EP372981B04", + "EP379938B01", + "EP385379B01", + "EP385384B01", + "EP385387B01", + "EP393712B02", + "EP393714B01", + "EP393715B01", + "EP393717B01", + "EP393718B01", + "EP400447B04", + "EP400448B04", + "EP410041B01", + "EP410042B01", + "EP410046B01", + "EP422407B01", + "EP431562B04", + "EP431570B01", + "EP431575B01", + "EP446602B01", + "EP446604B03", + "EP446610B02", + "EP447926B04", + "EP447927B04", + "EP447928B04", + "EP447929B04", + "EP447940B04", + "EP447975B02", + "EP448041B04", + "EP451428B04", + "EP455757B04", + "EP455759B04", + "EP455763B04", + "EP479266B04", + "EP479270B03", + "EP479794B02", + "EP479894B04", + "EP483291B04", + "EP484973B04", + "EP487995B04", + "EP504030B04", + "EP529635B02", + "EP533388B01", + "EP533389B03", + "EP533426B03", + "EP533429B04", + "EP542577B04", + "EP542578B04", + "EP554501B04", + "EP554506B04", + "EP554513B02", + "EP554515B04", + "EP554518B04", + "EP573296B01", + "EP573310B01", + "EP573313B01", + "EP584756B04", + "EP587475B04", + "EP587476B04", + "EP587477B04", + "EP587478B04", + "EP606652B04", + "EP606656B03", + "EP606662B04", + "EP606663B04", + "EP617440B01", + "EP617441B01", + "EP617442B01", + "EP617443B01", + "EP636802A01", + "EP649418A02", + "EP649623A01", + "EP649653A04", + "EP649737A03", + "EP656055A04", + "EP657260A01", + "EP657385A04", + "EP657386A01", + "EP667743A04", + "EP675042B01", + "EP675044A01", + "EP675075A04", + "EP683835A01", + "EP685640B01", + "EP702221B04", + "EP718687A04", + "EP718688A01", + "EP721390A04", + "EP724905B01", + "EP727972A04", + "EP729433A02", + "EP729434A01", + "EP738468A01", + "EP738469A01", + "EP749735A07", + "EP759450A04", + "EP768164A02", + "EP768748A04", + "EP772143A02", + "EP772145A02", + "EP784608A01", + "EP786631A04", + "EP790019A01", + "EP790020A02", + "EP790021A04", + "EP790023A01", + "EP805337A01", + "EP808104A01", + "EP808105A01", + "EP808106A01", + "EP808109A01", + "EP808110A04", + "EP808111A03", + "EP808112A04", + "EP843906A04", + "EP846485A01", + "EP868682A01", + "EP872341A01", + "EP876243A04", + "EP882752A01", + "EP886422A01", + "EP890157A02", + "EP890158A02", + "EP899038A04", + "EP905975A04", + "EP915769A04", + "EP921593A04", + "EP921594A04", + "EP927458A04", + "EP927459A04", + "EP927461A04", + "EP927462A02", + "EP929277A02", + "EP940013A01", + "EP944059A02", + "EP970001A01", + "EP970005A01", + "EP980752B04", + "EP981129A02", + "EP987683A01", + "EP996831B04", + "LP127767A01", + "LP127890A01", + "LP128476A01", + "LP128479A01", + "LP128538A01", + "LP128539A01", + "LP128540A01", + "LP128541A01", + "LP128543A01", + "LP154981A01", + "LP154986A01", + "LP166715A01", + "LP169879A01", + "LP191039A01", + "LP196272A01", + "SP205732A02", + "SP205754A01", + "SP229387A04", + "SP230380A02", + "SP230381A01", + "SP230382A04", + "SP231628A02", + "SP231629A02", + "SP231630A02", + "SP231631A02", + "SP232077A04", + "SP232079A01", + "SP232114A04", + "SP232270A02", + "SP232309A01", + "SP232310A04", + "SP232311A04", + "SP235186A04", + "SP235189A01", + "SP246941A01", + "SP247340A04", + "SP257517A04", + "SP257519A04", + "SP280481A02", + "SP284095A03", + "SP284096A02", + "SP317293A02", + "SP317297A02", + "SP331134A04", + "SP335002A04", + "SP353893A02", + "SP365864A04", + "SP388683A02", + "SP399724A04", + "SP404403A02", + "SP404405A02", + "SP404409A02", + "SP404412A02", + "SP408629A01", + "SP410793A01", + "SP410796A02", + "SP415021A02", + "SP415023A02", + "SP415025A01", + "SP415030A01", + "SP416130A04", + "SP453872A01", + "SP464350A04", + "SP464352A03", + "SP471496A04", + "SP478193A02", + "SP490298A02", + "SP491897A02", + "SP491898A02", + "SP491900A02", + "SP491907A02", + "SP503615A02", + "SP506933A04", + "SP511289A02", + "SP511294A04", + "SP515443A04", + "SP515763A04", + "SP531696A04", + "SP561451A04", + "SP573823A04", + "SP573824A04", + "SP573843A04", + "SP573849A04", + "SP573859A04", + "SP573860A01", + "SP577399A02", + "SP584547A02", + "SP584551A08", + "SP612495A04", + "SP612496A01", + "SP631994A04", + "SP640978A02", + "SP641029A02", + "SP645141A03", + "SP681591A04", + "SP683466A02", + "SP704319A04", + "SP754514A04", + "ep256643b01", + "lp127896a01", + ] + + self.sample_ids = self.feist_ids + self.gerwick_ids + self.nyu_ids + + self.qc_log_path = join(self.output_path, "NuQCJob", "logs") + makedirs(self.qc_log_path, exist_ok=True) + + log_files = { + "slurm-9999999_35.out": [ + "---------------", + "Run details:", + ( + "hds-fe848a9e-c0e9-49d9-978d-" + "27565a314e8b 1908305 b2-018" + ), + "---------------", + "+ this", + "+ that", + "+ blah", + ("something error: Generic Standin Error" " (GSE)."), + ], + "slurm-9999999_17.out": [ + "---------------", + "Run details:", + ( + "hds-fe848a9e-c0e9-49d9-978d-" + "27565a314e8b 1908305 b2-018" + ), + "---------------", + "+ this", + "+ that", + "+ blah", + ("something error: Another Standin Error" " (ASE)."), + ], + } + + for log_file in log_files: + fp = join(self.qc_log_path, log_file) + + with open(fp, "w") as f: + lines = log_files[log_file] + for line in lines: + f.write(f"{line}\n") + + def tearDown(self): + shutil.rmtree(self.output_path) + if exists(self.tmp_file_path): + remove(self.tmp_file_path) + + # for test_move_trimmed_files() + if exists(self.path("NuQCJob")): + shutil.rmtree(self.path("NuQCJob")) + + def test_nuqcjob_creation(self): + # use good-sample-sheet as the basis for a sample Metatranscriptomic + with self.assertRaises(PipelineError) as e: + NuQCJob( + self.fastq_root_path, + self.output_path, + "not/path/to/sample/sheet", + self.mmi_db_paths, + "queue_name", + 1, + 1440, + "8", + "fastp", + "minimap2", + "samtools", + [], + self.qiita_job_id, + 1000, + "", + self.movi_path, + self.gres_value, + self.pmls_path, + [], + bucket_size=8, + length_limit=100, + cores_per_task=4, + ) + + self.assertEqual( + str(e.exception), + "file 'not/path/to/sample/sheet' " "does not exist.", + ) + + # sample-sheet. + with open(self.tmp_file_path, "w") as f: + sheet = load_sample_sheet(self.good_sample_sheet_path) + sheet.write(f) + + nuqcjob = NuQCJob( + self.fastq_root_path, + self.output_path, + self.tmp_file_path, + self.mmi_db_paths, + "queue_name", + 1, + 1440, + "8", + "fastp", + "minimap2", + "samtools", + [], + self.qiita_job_id, + 1000, + "", + [], + self.movi_path, + self.gres_value, + self.pmls_path, + ) + + self.assertFalse(nuqcjob is None) + + # use good-sample-sheet as the basis for a sample-sheet with a + # bad assay type + with open(self.tmp_file_path, "w") as f: + sheet = load_sample_sheet(self.good_sample_sheet_path) + sheet.Header["Assay"] = "NotMetagenomic" + sheet.write(f) + + with self.assertRaisesRegex( + ValueError, + "tmp-sample-sheet.csv' does " + "not appear to be a valid " + "sample-sheet.", + ): + NuQCJob( + self.fastq_root_path, + self.output_path, + self.tmp_file_path, + self.mmi_db_paths, + "queue_name", + 1, + 1440, + "8", + "fastp", + "minimap2", + "samtools", + [], + self.qiita_job_id, + 1000, + "", + [], + self.movi_path, + self.gres_value, + self.pmls_path, + ) + + def test_error_msg_from_logs(self): + job = NuQCJob( + self.fastq_root_path, + self.output_path, + self.good_sample_sheet_path, + self.mmi_db_paths, + "queue_name", + 1, + 1440, + "8", + "fastp", + "minimap2", + "samtools", + [], + self.qiita_job_id, + 1000, + "", + [], + self.movi_path, + self.gres_value, + self.pmls_path, + ) + + self.assertFalse(job is None) + + # an internal method to force submit_job() to raise a JobFailedError + # instead of submitting the job w/sbatch and waiting for a failed + # job w/squeue. + self.assertTrue(job._toggle_force_job_fail()) + + try: + job.run() + except JobFailedError as e: + # assert that the text of the original error message was + # preserved, while including known strings from each of the + # sample log-files. + self.assertIn("This job died.", str(e)) + self.assertIn( + "something error: Generic Standin Error (GSE)", str(e) + ) + self.assertIn( + "something error: Another Standin Error (ASE)", str(e) + ) + + def test_assay_value(self): + with self.assertRaisesRegex( + ValueError, + "bad-sample-sheet-metagenomics" + ".csv' does not appear to be a" + " valid sample-sheet.", + ): + NuQCJob( + self.fastq_root_path, + self.output_path, + self.bad_sample_sheet_path, + self.mmi_db_paths, + "queue_name", + 1, + 1440, + "8", + "fastp", + "minimap2", + "samtools", + [], + self.qiita_job_id, + 1000, + "", + [], + self.movi_path, + self.gres_value, + self.pmls_path, + [] + ) + + def test_audit(self): + job = NuQCJob( + self.fastq_root_path, + self.output_path, + self.good_sample_sheet_path, + self.mmi_db_paths, + "queue_name", + 1, + 1440, + "8", + "fastp", + "minimap2", + "samtools", + [], + self.qiita_job_id, + 1000, + "", + [], + self.movi_path, + self.gres_value, + self.pmls_path, + [] + ) + + obs = job.audit(self.sample_ids) + + exp = [ + "22_001_710_503_791_00", + "22_001_801_552_503_00", + "3A", + "4A", + "5B", + "6A", + "7A", + "8A", + "CDPH-SAL_Salmonella_Typhi_MDL-143", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41", + "AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51", + "AP006367B02", + "AP029018B01", + "AP032412B04", + "AP032413B04", + "AP046324B02", + "AP046327B02", + "AP062219B03", + "AP065292B01", + "AP103463B01", + "AP173299B04", + "AP173301B04", + "AP173305B04", + "AP223470B01", + "AP298002B02", + "AP309872B03", + "AP324642B04", + "AP470859B01", + "AP481403B02", + "AP531397B04", + "AP549678B01", + "AP549681B02", + "AP568785B04", + "AP568787B02", + "AP581451B02", + "AP616837B04", + "AP668628B04", + "AP668631B04", + "AP687591B04", + "AP696363B02", + "AP732307B04", + "AP744361A02", + "AP745799A04", + "AP771472A04", + "AP780167B02", + "AP787247B04", + "AP795068B04", + "AP891020A04", + "AP905750A02", + "AP911328B01", + "AP953594A02", + "AP959450A03", + "AP967057A04", + "C14", + "C18", + "C20", + "C3", + "C5", + "C6", + "C9", + "CDPH-SAL_Salmonella_Typhi_MDL-144", + "CDPH-SAL_Salmonella_Typhi_MDL-145", + "CDPH-SAL_Salmonella_Typhi_MDL-146", + "CDPH-SAL_Salmonella_Typhi_MDL-147", + "CDPH-SAL_Salmonella_Typhi_MDL-148", + "CDPH-SAL_Salmonella_Typhi_MDL-149", + "CDPH-SAL_Salmonella_Typhi_MDL-150", + "CDPH-SAL_Salmonella_Typhi_MDL-151", + "CDPH-SAL_Salmonella_Typhi_MDL-152", + "CDPH-SAL_Salmonella_Typhi_MDL-153", + "CDPH-SAL_Salmonella_Typhi_MDL-154", + "CDPH-SAL_Salmonella_Typhi_MDL-155", + "CDPH-SAL_Salmonella_Typhi_MDL-156", + "CDPH-SAL_Salmonella_Typhi_MDL-157", + "CDPH-SAL_Salmonella_Typhi_MDL-158", + "CDPH-SAL_Salmonella_Typhi_MDL-159", + "CDPH-SAL_Salmonella_Typhi_MDL-160", + "CDPH-SAL_Salmonella_Typhi_MDL-161", + "CDPH-SAL_Salmonella_Typhi_MDL-162", + "CDPH-SAL_Salmonella_Typhi_MDL-163", + "CDPH-SAL_Salmonella_Typhi_MDL-164", + "CDPH-SAL_Salmonella_Typhi_MDL-165", + "CDPH-SAL_Salmonella_Typhi_MDL-166", + "CDPH-SAL_Salmonella_Typhi_MDL-167", + "CDPH-SAL_Salmonella_Typhi_MDL-168", + "Deoxyribose_PALE_ALE__MG1655_BOP27_10_13", + "Deoxyribose_PALE_ALE__MG1655_BOP27_10_28", + "Deoxyribose_PALE_ALE__MG1655_BOP27_10_51", + "Deoxyribose_PALE_ALE__MG1655_BOP27_4_14", + "Deoxyribose_PALE_ALE__MG1655_BOP27_4_23", + "Deoxyribose_PALE_ALE__MG1655_BOP27_4_48", + "Deoxyribose_PALE_ALE__MG1655_BOP27_6_21", + "Deoxyribose_PALE_ALE__MG1655_BOP27_6_35", + "Deoxyribose_PALE_ALE__MG1655_Lib4_18_19", + "Deoxyribose_PALE_ALE__MG1655_Lib4_18_35", + "Deoxyribose_PALE_ALE__MG1655_Lib4_18_59", + "Deoxyribose_PALE_ALE__MG1655_Lib4_20_16", + "Deoxyribose_PALE_ALE__MG1655_Lib4_20_43", + "Deoxyribose_PALE_ALE__MG1655_Lib4_20_71", + "Deoxyribose_PALE_ALE__MG1655_Lib4_22_16", + "Deoxyribose_PALE_ALE__MG1655_Lib4_22_28", + "Deoxyribose_PALE_ALE__MG1655_Lib4_22_52", + "Deoxyribose_PALE_ALE__MG1655_Lib4_24_24", + "Deoxyribose_PALE_ALE__MG1655_Lib4_24_52", + "Deoxyribose_PALE_ALE__MG1655_Lib4_24_9", + "Deoxyribose_PALE_ALE__MG1655_Lib4_26_27", + "Deoxyribose_PALE_ALE__MG1655_Lib4_26_6", + "Deoxyribose_PALE_ALE__MG1655_Lib4_26_69", + "Deoxyribose_PALE_ALE__MG1655_Lib4_28_13", + "Deoxyribose_PALE_ALE__MG1655_Lib4_28_28", + "Deoxyribose_PALE_ALE__MG1655_Lib4_28_53", + "Deoxyribose_PALE_ALE__MG1655_Lib4_30_22", + "Deoxyribose_PALE_ALE__MG1655_Lib4_30_60", + "Deoxyribose_PALE_ALE__MG1655_Lib4_30_7", + "Deoxyribose_PALE_ALE__MG1655_Lib4_32_20", + "Deoxyribose_PALE_ALE__MG1655_Lib4_32_56", + "Deoxyribose_PALE_ALE__MG1655_Lib4_32_6", + "EP001624B01", + "EP001625B01", + "EP012991B03", + "EP023801B04", + "EP023808B02", + "EP032410B02", + "EP032412B02", + "EP043583B01", + "EP054632B01", + "EP061002B01", + "EP073160B01", + "EP073209B02", + "EP073216B01", + "EP087938B02", + "EP090129B04", + "EP112567B02", + "EP121011B01", + "EP121013B01", + "EP128904B02", + "EP128910B01", + "EP159692B04", + "EP159695B01", + "EP163771B01", + "EP182060B03", + "EP182065B04", + "EP182243B02", + "EP182346B04", + "EP184255B04", + "EP190307B01", + "EP202095B04", + "EP202452B01", + "EP207036B01", + "EP207041B01", + "EP207042B04", + "EP212214B01", + "EP216516B04", + "EP230245B01", + "EP238034B01", + "EP244360B01", + "EP244366B01", + "EP256644B01", + "EP256645B01", + "EP260543B04", + "EP260544B04", + "EP273332B04", + "EP282107B01", + "EP282108B01", + "EP282276B04", + "EP291979B04", + "EP291980B04", + "EP305735B04", + "EP316863B03", + "EP320438B01", + "EP333541B04", + "EP337325B04", + "EP337425B01", + "EP339053B02", + "EP339057B02", + "EP339059B02", + "EP339061B02", + "EP372981B04", + "EP379938B01", + "EP385379B01", + "EP385384B01", + "EP385387B01", + "EP393712B02", + "EP393714B01", + "EP393715B01", + "EP393717B01", + "EP393718B01", + "EP400447B04", + "EP400448B04", + "EP410041B01", + "EP410042B01", + "EP410046B01", + "EP422407B01", + "EP431562B04", + "EP431570B01", + "EP431575B01", + "EP446602B01", + "EP446604B03", + "EP446610B02", + "EP447926B04", + "EP447927B04", + "EP447928B04", + "EP447929B04", + "EP447940B04", + "EP447975B02", + "EP448041B04", + "EP451428B04", + "EP455757B04", + "EP455759B04", + "EP455763B04", + "EP479266B04", + "EP479270B03", + "EP479794B02", + "EP479894B04", + "EP483291B04", + "EP484973B04", + "EP487995B04", + "EP504030B04", + "EP529635B02", + "EP533388B01", + "EP533389B03", + "EP533426B03", + "EP533429B04", + "EP542577B04", + "EP542578B04", + "EP554501B04", + "EP554506B04", + "EP554513B02", + "EP554515B04", + "EP554518B04", + "EP573296B01", + "EP573310B01", + "EP573313B01", + "EP584756B04", + "EP587475B04", + "EP587476B04", + "EP587477B04", + "EP587478B04", + "EP606652B04", + "EP606656B03", + "EP606662B04", + "EP606663B04", + "EP617440B01", + "EP617441B01", + "EP617442B01", + "EP617443B01", + "EP636802A01", + "EP649418A02", + "EP649623A01", + "EP649653A04", + "EP649737A03", + "EP656055A04", + "EP657260A01", + "EP657385A04", + "EP657386A01", + "EP667743A04", + "EP675042B01", + "EP675044A01", + "EP675075A04", + "EP683835A01", + "EP685640B01", + "EP702221B04", + "EP718687A04", + "EP718688A01", + "EP721390A04", + "EP724905B01", + "EP727972A04", + "EP729433A02", + "EP729434A01", + "EP738468A01", + "EP738469A01", + "EP749735A07", + "EP759450A04", + "EP768164A02", + "EP768748A04", + "EP772143A02", + "EP772145A02", + "EP784608A01", + "EP786631A04", + "EP790019A01", + "EP790020A02", + "EP790021A04", + "EP790023A01", + "EP805337A01", + "EP808104A01", + "EP808105A01", + "EP808106A01", + "EP808109A01", + "EP808110A04", + "EP808111A03", + "EP808112A04", + "EP843906A04", + "EP846485A01", + "EP868682A01", + "EP872341A01", + "EP876243A04", + "EP882752A01", + "EP886422A01", + "EP890157A02", + "EP890158A02", + "EP899038A04", + "EP905975A04", + "EP915769A04", + "EP921593A04", + "EP921594A04", + "EP927458A04", + "EP927459A04", + "EP927461A04", + "EP927462A02", + "EP929277A02", + "EP940013A01", + "EP944059A02", + "EP970001A01", + "EP970005A01", + "EP980752B04", + "EP981129A02", + "EP987683A01", + "EP996831B04", + "GFR", + "ISB", + "JBI_KHP_HGL_021", + "JBI_KHP_HGL_022", + "JBI_KHP_HGL_023", + "JBI_KHP_HGL_024", + "JBI_KHP_HGL_025", + "JBI_KHP_HGL_026", + "JBI_KHP_HGL_027", + "JBI_KHP_HGL_028_Amitesh_soxR", + "JBI_KHP_HGL_029_Amitesh_oxyR", + "JBI_KHP_HGL_030_Amitesh_soxR_oxyR", + "JBI_KHP_HGL_031_Amitesh_rpoS", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153", + "JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154", + "JM-Metabolic__GN02424", + "JM-Metabolic__GN02446", + "JM-Metabolic__GN02449", + "JM-Metabolic__GN02487", + "JM-Metabolic__GN02501", + "JM-Metabolic__GN02514", + "JM-Metabolic__GN02529", + "JM-Metabolic__GN02531", + "JM-Metabolic__GN02567", + "JM-Metabolic__GN02590", + "JM-Metabolic__GN02657", + "JM-Metabolic__GN02748", + "JM-Metabolic__GN02766", + "JM-Metabolic__GN02769", + "JM-Metabolic__GN02787", + "JM-Metabolic__GN03132", + "JM-Metabolic__GN03218", + "JM-Metabolic__GN03252", + "JM-Metabolic__GN03409", + "JM-Metabolic__GN04014", + "JM-Metabolic__GN04094", + "JM-Metabolic__GN04255", + "JM-Metabolic__GN04306", + "JM-Metabolic__GN04428", + "JM-Metabolic__GN04488", + "JM-Metabolic__GN04540", + "JM-Metabolic__GN04563", + "JM-Metabolic__GN04612", + "JM-Metabolic__GN04665", + "JM-Metabolic__GN04682", + "JM-Metabolic__GN05002", + "JM-Metabolic__GN05109", + "JM-Metabolic__GN05128", + "JM-Metabolic__GN05367", + "JM-Metabolic__GN05377", + "JM-Metabolic__GN0_2005", + "JM-Metabolic__GN0_2007", + "JM-Metabolic__GN0_2009", + "JM-Metabolic__GN0_2094", + "JM-Metabolic__GN0_2099", + "JM-Metabolic__GN0_2148", + "JM-Metabolic__GN0_2165", + "JM-Metabolic__GN0_2169", + "JM-Metabolic__GN0_2172", + "JM-Metabolic__GN0_2175", + "JM-Metabolic__GN0_2183", + "JM-Metabolic__GN0_2215", + "JM-Metabolic__GN0_2254", + "JM-Metabolic__GN0_2277", + "JM-Metabolic__GN0_2290", + "JM-Metabolic__GN0_2317", + "JM-Metabolic__GN0_2337", + "JM-Metabolic__GN0_2354", + "JM-Metabolic__GN0_2375", + "JM-Metabolic__GN0_2380", + "JM-Metabolic__GN0_2393", + "JM-Metabolic__GN0_2404", + "LP127767A01", + "LP127890A01", + "LP128476A01", + "LP128479A01", + "LP128538A01", + "LP128539A01", + "LP128540A01", + "LP128541A01", + "LP128543A01", + "LP154981A01", + "LP154986A01", + "LP166715A01", + "LP169879A01", + "LP191039A01", + "LP196272A01", + "P21_E_coli_ELI344", + "P21_E_coli_ELI345", + "P21_E_coli_ELI347", + "P21_E_coli_ELI348", + "P21_E_coli_ELI349", + "P21_E_coli_ELI350", + "P21_E_coli_ELI351", + "P21_E_coli_ELI352", + "P21_E_coli_ELI353", + "P21_E_coli_ELI354", + "P21_E_coli_ELI355", + "P21_E_coli_ELI357", + "P21_E_coli_ELI358", + "P21_E_coli_ELI359", + "P21_E_coli_ELI361", + "P21_E_coli_ELI362", + "P21_E_coli_ELI363", + "P21_E_coli_ELI364", + "P21_E_coli_ELI365", + "P21_E_coli_ELI366", + "P21_E_coli_ELI367", + "P21_E_coli_ELI368", + "P21_E_coli_ELI369", + "Pputida_JBEI__HGL_Pputida_107_BP6", + "Pputida_JBEI__HGL_Pputida_108_BP7", + "Pputida_JBEI__HGL_Pputida_109_BP8", + "Pputida_JBEI__HGL_Pputida_110_M2", + "Pputida_JBEI__HGL_Pputida_111_M5", + "Pputida_PALE__HGL_Pputida_145", + "Pputida_PALE__HGL_Pputida_146", + "Pputida_PALE__HGL_Pputida_147", + "Pputida_PALE__HGL_Pputida_148", + "Pputida_PALE__HGL_Pputida_149", + "Pputida_PALE__HGL_Pputida_150", + "Pputida_PALE__HGL_Pputida_151", + "Pputida_PALE__HGL_Pputida_152", + "Pputida_PALE__HGL_Pputida_153", + "Pputida_PALE__HGL_Pputida_154", + "Pputida_PALE__HGL_Pputida_155", + "Pputida_PALE__HGL_Pputida_156", + "Pputida_PALE__HGL_Pputida_157", + "Pputida_PALE__HGL_Pputida_158", + "Pputida_PALE__HGL_Pputida_159", + "Pputida_PALE__HGL_Pputida_160", + "Pputida_PALE__HGL_Pputida_161", + "Pputida_PALE__HGL_Pputida_162", + "Pputida_PALE__HGL_Pputida_163", + "Pputida_PALE__HGL_Pputida_164", + "Pputida_PALE__HGL_Pputida_165", + "Pputida_PALE__HGL_Pputida_166", + "Pputida_PALE__HGL_Pputida_167", + "Pputida_PALE__HGL_Pputida_168", + "Pputida_PALE__HGL_Pputida_169", + "Pputida_PALE__HGL_Pputida_170", + "Pputida_PALE__HGL_Pputida_171", + "Pputida_PALE__HGL_Pputida_172", + "Pputida_PALE__HGL_Pputida_173", + "Pputida_PALE__HGL_Pputida_174", + "Pputida_PALE__HGL_Pputida_175", + "Pputida_PALE__HGL_Pputida_176", + "Pputida_TALE__HGL_Pputida_112", + "Pputida_TALE__HGL_Pputida_113", + "Pputida_TALE__HGL_Pputida_114", + "Pputida_TALE__HGL_Pputida_115", + "Pputida_TALE__HGL_Pputida_116", + "Pputida_TALE__HGL_Pputida_117", + "Pputida_TALE__HGL_Pputida_118", + "Pputida_TALE__HGL_Pputida_119", + "Pputida_TALE__HGL_Pputida_120", + "Pputida_TALE__HGL_Pputida_121", + "Pputida_TALE__HGL_Pputida_122", + "Pputida_TALE__HGL_Pputida_123", + "Pputida_TALE__HGL_Pputida_124", + "Pputida_TALE__HGL_Pputida_125", + "Pputida_TALE__HGL_Pputida_126", + "Pputida_TALE__HGL_Pputida_127", + "Pputida_TALE__HGL_Pputida_128", + "Pputida_TALE__HGL_Pputida_129", + "Pputida_TALE__HGL_Pputida_130", + "Pputida_TALE__HGL_Pputida_131", + "Pputida_TALE__HGL_Pputida_132", + "Pputida_TALE__HGL_Pputida_133", + "Pputida_TALE__HGL_Pputida_134", + "Pputida_TALE__HGL_Pputida_135", + "Pputida_TALE__HGL_Pputida_136", + "Pputida_TALE__HGL_Pputida_137", + "Pputida_TALE__HGL_Pputida_138", + "Pputida_TALE__HGL_Pputida_139", + "Pputida_TALE__HGL_Pputida_140", + "Pputida_TALE__HGL_Pputida_141", + "Pputida_TALE__HGL_Pputida_142", + "Pputida_TALE__HGL_Pputida_143", + "Pputida_TALE__HGL_Pputida_144", + "RMA_KHP_rpoS_Mage_Q97D", + "RMA_KHP_rpoS_Mage_Q97E", + "RMA_KHP_rpoS_Mage_Q97L", + "RMA_KHP_rpoS_Mage_Q97N", + "SP205732A02", + "SP205754A01", + "SP229387A04", + "SP230380A02", + "SP230381A01", + "SP230382A04", + "SP231628A02", + "SP231629A02", + "SP231630A02", + "SP231631A02", + "SP232077A04", + "SP232079A01", + "SP232114A04", + "SP232270A02", + "SP232309A01", + "SP232310A04", + "SP232311A04", + "SP235186A04", + "SP235189A01", + "SP246941A01", + "SP247340A04", + "SP257517A04", + "SP257519A04", + "SP280481A02", + "SP284095A03", + "SP284096A02", + "SP317293A02", + "SP317297A02", + "SP331134A04", + "SP335002A04", + "SP353893A02", + "SP365864A04", + "SP388683A02", + "SP399724A04", + "SP404403A02", + "SP404405A02", + "SP404409A02", + "SP404412A02", + "SP408629A01", + "SP410793A01", + "SP410796A02", + "SP415021A02", + "SP415023A02", + "SP415025A01", + "SP415030A01", + "SP416130A04", + "SP453872A01", + "SP464350A04", + "SP464352A03", + "SP471496A04", + "SP478193A02", + "SP490298A02", + "SP491897A02", + "SP491898A02", + "SP491900A02", + "SP491907A02", + "SP503615A02", + "SP506933A04", + "SP511289A02", + "SP511294A04", + "SP515443A04", + "SP515763A04", + "SP531696A04", + "SP561451A04", + "SP573823A04", + "SP573824A04", + "SP573843A04", + "SP573849A04", + "SP573859A04", + "SP573860A01", + "SP577399A02", + "SP584547A02", + "SP584551A08", + "SP612495A04", + "SP612496A01", + "SP631994A04", + "SP640978A02", + "SP641029A02", + "SP645141A03", + "SP681591A04", + "SP683466A02", + "SP704319A04", + "SP754514A04", + "ep256643b01", + "lp127896a01", + "stALE_E_coli_A10_F131_I1_R1", + "stALE_E_coli_A10_F21_I1_R1", + "stALE_E_coli_A10_F43_I1_R1", + "stALE_E_coli_A11_F119_I1_R1", + "stALE_E_coli_A11_F21_I1_R1", + "stALE_E_coli_A11_F43_I1_R1", + "stALE_E_coli_A12_F136_I1_R1", + "stALE_E_coli_A12_F21_I1_R1", + "stALE_E_coli_A12_F43_I1_R1", + "stALE_E_coli_A13_F121_I1_R1", + "stALE_E_coli_A13_F20_I1_R1", + "stALE_E_coli_A13_F42_I1_R1", + "stALE_E_coli_A14_F133_I1_R1", + "stALE_E_coli_A14_F20_I1_R1", + "stALE_E_coli_A14_F42_I1_R1", + "stALE_E_coli_A15_F117_I1_R1", + "stALE_E_coli_A15_F21_I1_R1", + "stALE_E_coli_A15_F42_I1_R1", + "stALE_E_coli_A16_F134_I1_R1", + "stALE_E_coli_A16_F20_I1_R1", + "stALE_E_coli_A16_F42_I1_R1", + "stALE_E_coli_A17_F118_I1_R1", + "stALE_E_coli_A17_F21_I1_R1", + "stALE_E_coli_A18_F130_I1_R1", + "stALE_E_coli_A18_F18_I1_R1", + "stALE_E_coli_A18_F39_I1_R1", + "stALE_E_coli_A1_F21_I1_R1", + "stALE_E_coli_A2_F21_I1_R1", + "stALE_E_coli_A3_F18_I1_R1", + "stALE_E_coli_A3_F40_I1_R1", + "stALE_E_coli_A4_F21_I1_R1", + "stALE_E_coli_A4_F21_I1_R2", + "stALE_E_coli_A4_F42_I1_R1", + "stALE_E_coli_A5_F21_I1_R1", + "stALE_E_coli_A5_F42_I1_R1", + "stALE_E_coli_A6_F21_I1_R1", + "stALE_E_coli_A6_F43_I1_R1", + "stALE_E_coli_A7_F21_I1_R1", + "stALE_E_coli_A7_F42_I1_R1", + "stALE_E_coli_A8_F20_I1_R1", + "stALE_E_coli_A8_F42_I1_R1", + "stALE_E_coli_A9_F21_I1_R1", + "stALE_E_coli_A9_F44_I1_R1", + ] + + self.assertEqual(sorted(obs), sorted(exp)) + + # these fake sample-ids should be returned by audit() as missing. + obs = job.audit(self.sample_ids + ["not-a-sample", "BLANK1"]) + obs = sorted(obs) + exp = sorted(exp + ["BLANK1", "not-a-sample"]) + + self.assertListEqual(obs, exp) + + def test_completed_file_generation(self): + double_db_paths = ["db_path/mmi_1.db", "db_path/mmi_2.db"] + + job = NuQCJob( + self.fastq_root_path, + self.output_path, + self.good_sample_sheet_path, + double_db_paths, + "queue_name", + 1, + 1440, + "8", + "fastp", + "minimap2", + "samtools", + [], + self.qiita_job_id, + 1000, + "", + [], + self.movi_path, + self.gres_value, + self.pmls_path, + [] + ) + + my_path = ( + "tests/data/output_dir/" "NuQCJob" + ) + + # since a .completed file is generated when the job is complete, we + # must manually create the file we expect to see once a run is + # complete. e.g.: /NuQCJob/ + # hds-c11c054e-aeb1-46ce-8cea-e233d4cd3070.1740338.completed + comp_fp = join(my_path, f"hds-{self.qiita_job_id}.3456.completed") + + with open(comp_fp, "w") as f: + f.write("This is a .completed file.") + + self.assertTrue(job._confirm_job_completed()) + + def test_completed_file_generation_some_failures(self): + double_db_paths = ["db_path/mmi_1.db", "db_path/mmi_2.db"] + + job = NuQCJob( + self.fastq_root_path, + self.output_path, + self.good_sample_sheet_path, + double_db_paths, + "queue_name", + 1, + 1440, + "8", + "fastp", + "minimap2", + "samtools", + [], + self.qiita_job_id, + 1000, + "", + [], + self.movi_path, + self.gres_value, + self.pmls_path, + [] + ) + + # test _confirm_job_completed() fails when a .completed file isn't + # manually created. + self.assertFalse(job._confirm_job_completed()) + + def test_generate_job_script(self): + double_db_paths = ["db_path/mmi_1.db", "db_path/mmi_2.db"] + job = NuQCJob( + self.fastq_root_path, + self.output_path, + self.good_sample_sheet_path, + double_db_paths, + "queue_name", + 1, + 1440, + "8", + "fastp", + "minimap2", + "samtools", + [], + self.qiita_job_id, + 1000, + "", + self.movi_path, + self.gres_value, + self.pmls_path, + [] + ) + + # 2k as a parameter will promote the default value. + job_script_path = job._generate_job_script(2048) + + self.assertTrue(exists(job_script_path)) + + def test_regular_expressions(self): + double_db_paths = ["db_path/mmi_1.db", "db_path/mmi_2.db"] + job = NuQCJob( + self.fastq_root_path, + self.output_path, + self.good_sample_sheet_path, + double_db_paths, + "queue_name", + 1, + 1440, + "8", + "fastp", + "minimap2", + "samtools", + [], + self.qiita_job_id, + 1000, + "", + self.movi_path, + self.gres_value, + self.pmls_path, + [] + ) + + # a sample of known valid fastq file-names plus a few edge-cases. + good_names = [ + "11407-AAGTAGGAAGGA_S3249_L002_R1_001.fastq.gz", + "11408-TGACGAGGGCTG_S1039_L001_R2_001.fastq.gz", + "1293-F04_S122_L001_R1_001.fastq.gz", + "2166_S69_L001_R1_001.fastq.gz", + "502-708-NJ50-129A_S50_L001_R2_001.fastq.gz", + "BLANK4_11H_S760_L002_R2_001.fastq.gz", + "BLANKH_1H_S8_L002_R1_001.fastq.gz", + "BLANK_11_7_F_S246_L003_R1_001.fastq.gz", + "CON.ITS.R.3.21_S843_L001_R2_001.fastq.gz", + "PR1_14Nov15_S11_L001_R2_001.fastq.gz", + # test S can have three or four digits appended + "ABCD_S9999_L002_R1_001.fastq.gz", + "ABCD_S989_L003_R2_001.fastq.gz", + # test that more than just L001 and L002 are allowed. + "ABCD_S1_L003_R2_001.fastq.gz", + # test that additional '_' can appear in a name w/out + # ill-effect. + "ABCD_ABCD_S1_L001_R2_001.fastq.gz", + ] + + # a selection of known fastq file-names that we expect should fail + # based on their non-standard naming. + bad_names = [ + "0363237608_S104_L001_R1_001.fastp.fastq.gz", + "12050-GTCGTTACCCGC-407_S149_L002_R2_001.fastp.fastq.gz", + "13392_2065_165845_KFB9Y_176_GACACCGT_TACGAGCA_R2.fastq" ".gz", + "1373A..pool764_R1.fastq.gz", + "20N_I_S189_L004.nonribosomal.R2.fastq.gz", + "363148415_S263_L001_R2_001.fastp.fastq.gz", + "363193054_S164_L001_R1_001.fastp.fastq.gz", + "9741_Colon_Rec_Nne_Ab_No_S59_L004_R2_001.fastp.fastq.gz", + "CSM7KOO9.nonribosomal.R1.fastq.gz", + "DSMP_V1V2_RNA_B_2_1_V1V2.RNA.267.B_R1.fastq.gz", + "G36045_R2_001.fastq.gz", + "G45075.R1.fastq.gz", + "J40_52_43_S2031.R2.fastq.gz", + "NG-29203_ITS2a_F205_lib563520_7953_1_1.fastq.gz", + "Q1_71602_0008_8_1_16_S2623_L005.unaligned.1.fastq.gz", + "Q2_71802_0013_6_23_16_S2146_L006.fastq.gz", + "RR225204301.5_S88_L001_R_001Unpaired.fastq.gz", + "SAMEA6809446.ERR4083885.R1.ebi.fastq.gz", + "SRR6967693_1.fastq.gz", + "SRS1838544.SRR5079047_R1.fastq.gz", + "S_71702_0030_9_13_16_S2303_L005.R1.fastq.gz", + "TCGA-R5-A7O7-01A-11R-A33Y-31_rnaseq.ribosomal.R2." "fastq.gz", + "UNCID_2657496.7819e7d1-5b57-4a61-9eee-6aa31876e78b." + "sorted_genome_alignments.nonribosomal.R2.fastq.gz", + "_1_TCGA-HU-A4H6-01A-11R-A251-31_rnaseq.nonribosomal.R2." + "fastq.gz", + "tum038.fq.SRR8290295.R1.ebi.fastq.gz", + # we don't want filtered or trimmed files to pass this + # filter, only raw-files. + "2166_S69_L001_R1_001.filtered.fastq.gz", + "2166_S69_L001_R1_001.trimmed.fastq.gz", + # indexed-read files are also not allowed for this + # filter. + "2166_S69_L001_I1_001.fastq.gz", + ] + + self._helper(job.fastq_regex, good_names, bad_names) + + # the regexes for html, json are quite similar to the regex for fastq + # files. + good_names = [ + "11407-AAGTAGGAAGGA_S3249_L002_R1_001.html", + "1293-F04_S122_L001_R1_001.html", + "502-708-NJ50-129A_S50_L001_R2_001.html", + "CON.ITS.R.3.21_S843_L001_R2_001.html", + "ABCD_S9999_L002_R1_001.html", + "ABCD_S1_L003_R2_001.html", + "ABCD_ABCD_S1_L001_R2_001.html", + ] + + bad_names = [ + "0363237608_S104_L001_R1_001.fastp.html", + "20N_I_S189_L004.nonribosomal.R2.html", + "363193054_S164_L001_R1_001.fastp.html", + "CSM7KOO9.nonribosomal.R1.html", + "G36045_R2_001.html", + "J40_52_43_S2031.R2.html", + "Q1_71602_0008_8_1_16_S2623_L005.unaligned.1.html", + "RR225204301.5_S88_L001_R_001Unpaired.html", + "SRR6967693_1.html", + "S_71702_0030_9_13_16_S2303_L005.R1.html", + ( + "UNCID_2657496.7819e7d1-5b57-4a61-9eee-6aa31876e78b." + "sorted_genome_alignments.nonribosomal.R2.html" + ), + # we don't expect file-names with filtered or trimmed as + # substrings, or index files but will include them here. + "2166_S69_L001_R1_001.filtered.html", + "2166_S69_L001_R1_001.trimmed.html", + "2166_S69_L001_I1_001.html", + ] + + self._helper(job.html_regex, good_names, bad_names) + + good_names = [ + "11407-AAGTAGGAAGGA_S3249_L002_R1_001.json", + "1293-F04_S122_L001_R1_001.json", + "502-708-NJ50-129A_S50_L001_R2_001.json", + "CON.ITS.R.3.21_S843_L001_R2_001.json", + "ABCD_S9999_L002_R1_001.json", + "ABCD_S1_L003_R2_001.json", + "ABCD_ABCD_S1_L001_R2_001.json", + ] + + bad_names = [ + "0363237608_S104_L001_R1_001.fastp.json", + "20N_I_S189_L004.nonribosomal.R2.json", + "363193054_S164_L001_R1_001.fastp.json", + "CSM7KOO9.nonribosomal.R1.json", + "G36045_R2_001.json", + "J40_52_43_S2031.R2.json", + "Q1_71602_0008_8_1_16_S2623_L005.unaligned.1.json", + "RR225204301.5_S88_L001_R_001Unpaired.json", + "SRR6967693_1.json", + "S_71702_0030_9_13_16_S2303_L005.R1.json", + ( + "UNCID_2657496.7819e7d1-5b57-4a61-9eee-6aa31876e78b." + "sorted_genome_alignments.nonribosomal.R2.json" + ), + # we don't expect file-names with filtered or trimmed as + # substrings, or index files but will include them here. + "2166_S69_L001_R1_001.filtered.json", + "2166_S69_L001_R1_001.trimmed.json", + "2166_S69_L001_I1_001.json", + ] + + self._helper(job.json_regex, good_names, bad_names) + + def test_generate_mmi_filter_cmds(self): + double_db_paths = ["db_path/mmi_1.db", "db_path/mmi_2.db"] + job = NuQCJob( + self.fastq_root_path, + self.output_path, + self.good_sample_sheet_path, + double_db_paths, + "queue_name", + 1, + 1440, + "8", + "fastp", + "minimap2", + "samtools", + [], + self.qiita_job_id, + 1000, + "", + self.movi_path, + self.gres_value, + self.pmls_path, + [] + ) + + obs = job._generate_mmi_filter_cmds("/my_work_dir") + + exp = [ + "minimap2 -2 -ax sr -t 2 db_path/mmi_1.db /my_work_dir/seqs." + "interleaved.fastq -a | samtools fastq -@ 2 -f 12 -F 256 > " + "/my_work_dir/foo", + "minimap2 -2 -ax sr -t 2 db_path/mmi_2.db /my_work_dir/foo -a" + " | samtools fastq -@ 2 -f 12 -F 256 > /my_work_dir/bar", + "mv /my_work_dir/bar /my_work_dir/seqs.interleaved.filter_" + "alignment.fastq", + "[ -e /my_work_dir/foo ] && rm /my_work_dir/foo", + "[ -e /my_work_dir/bar ] && rm /my_work_dir/bar", + ] + + exp = "\n".join(exp) + + self.assertEqual(obs, exp) + + def test_generate_mmi_filter_cmds_w_descriptions(self): + double_db_paths = ["db_path/mmi_1.db", "db_path/mmi_2.db"] + job = NuQCJob( + self.fastq_root_path, + self.output_path, + self.good_sample_sheet_path, + double_db_paths, + "queue_name", + 1, + 1440, + "8", + "fastp", + "minimap2", + "samtools", + [], + self.qiita_job_id, + 1000, + "", + self.movi_path, + self.gres_value, + self.pmls_path, + ["BX"] + ) + + obs = job._generate_mmi_filter_cmds("/my_work_dir") + + exp = [ + "minimap2 -2 -ax sr -y -t 2 db_path/mmi_1.db /my_work_dir/seqs." + "interleaved.fastq -a | samtools fastq -@ 2 -f 12 -F 256 -T BX > " + "/my_work_dir/foo", + "minimap2 -2 -ax sr -y -t 2 db_path/mmi_2.db /my_work_dir/foo -a" + " | samtools fastq -@ 2 -f 12 -F 256 -T BX > /my_work_dir/bar", + "mv /my_work_dir/bar /my_work_dir/seqs.interleaved.filter_" + "alignment.fastq", + "[ -e /my_work_dir/foo ] && rm /my_work_dir/foo", + "[ -e /my_work_dir/bar ] && rm /my_work_dir/bar", + ] + + exp = "\n".join(exp) + + self.assertEqual(obs, exp) + + def test_generate_mmi_filter_cmds_w_annotate_fastq(self): + double_db_paths = ["db_path/mmi_1.db", "db_path/mmi_2.db"] + job = NuQCJob( + self.fastq_root_path, + self.output_path, + self.good_sample_sheet_path, + double_db_paths, + "queue_name", + 1, + 1440, + "8", + "fastp", + "minimap2", + "samtools", + [], + self.qiita_job_id, + 1000, + "", + self.movi_path, + self.gres_value, + self.pmls_path, + ['BX'] + ) + + obs = job._generate_mmi_filter_cmds("/my_work_dir") + + exp = [ + "minimap2 -2 -ax sr -y -t 2 db_path/mmi_1.db /my_work_dir/seqs." + "interleaved.fastq -a | samtools fastq -@ 2 -f 12 -F 256 -T BX > " + "/my_work_dir/foo", + "minimap2 -2 -ax sr -y -t 2 db_path/mmi_2.db /my_work_dir/foo -a" + " | samtools fastq -@ 2 -f 12 -F 256 -T BX > /my_work_dir/bar", + "mv /my_work_dir/bar /my_work_dir/seqs.interleaved.filter_" + "alignment.fastq", + "[ -e /my_work_dir/foo ] && rm /my_work_dir/foo", + "[ -e /my_work_dir/bar ] && rm /my_work_dir/bar" + ] + + exp = "\n".join(exp) + + self.assertEqual(obs, exp) + + def test_move_trimmed(self): + # create a NuQCJob() object, but do not call run(). + # instead we will manually create some files to test with. + double_db_paths = ["db_path/mmi_1.db", "db_path/mmi_2.db"] + job = NuQCJob( + self.fastq_root_path, + self.output_path, + self.good_sample_sheet_path, + double_db_paths, + "queue_name", + 1, + 1440, + "8", + "fastp", + "minimap2", + "samtools", + [], + self.qiita_job_id, + 1000, + "", + self.movi_path, + self.gres_value, + self.pmls_path, + ['BX'] + ) + + sample_dir = [ + "NuQCJob/only-adapter-filtered/EP890158A02_S58_L001_R1_001." + "interleave.fastq.gz", + "NuQCJob/only-adapter-filtered/EP890158A02_S58_L001_R2_001." + "interleave.fastq.gz", + "NuQCJob/only-adapter-filtered/EP023801B04_S27_L001_R1_001." + "interleave.fastq.gz", + "NuQCJob/only-adapter-filtered/EP023801B04_S27_L001_R2_001." + "interleave.fastq.gz", + "NuQCJob/NPH_15288/fastp_reports_dir/html/EP890158A02_S58_L001_" + "R1_001.html", + "NuQCJob/NPH_15288/fastp_reports_dir/json/EP023801B04_S27_L001_" + "R1_001.json", + "NuQCJob/process_all_fastq_files.sh", + "NuQCJob/hds-a439513a-5fcc-4f29-a1e5-902ee5c1309d.1897981." + "completed", + "NuQCJob/logs/slurm-1897981_1.out", + "NuQCJob/tmp/hds-a439513a-5fcc-4f29-a1e5-902ee5c1309d-1", + 'NuQCJob/only-adapter-filtered/CDPH-SAL_' + 'Salmonella_Typhi_MDL-150__S36_L001_R1_001.interleave.fastq.gz', + 'NuQCJob/only-adapter-filtered/CDPH-SAL_' + 'Salmonella_Typhi_MDL-150__S36_L001_R2_001.interleave.fastq.gz', + ] + + for dummy_fp in sample_dir: + dummy_fp = self.path(dummy_fp) + dummy_path = dirname(dummy_fp) + makedirs(dummy_path, exist_ok=True) + with open(dummy_fp, "w") as f: + f.write("This is a dummy file.\n") + + trimmed_only_path = self.path("NuQCJob", "only-adapter-filtered") + + # test _move_trimmed_files() by verifying that only the interleave + # fastq files from the NYU project are moved. + job._move_trimmed_files("NYU_BMS_Melanoma_13059", trimmed_only_path) + + new_path = join(trimmed_only_path, "NYU_BMS_Melanoma_13059") + + exp = { + 'NuQCJob/only-adapter-filtered/NYU_BMS_Melanoma_13059/EP890158A02' + '_S58_L001_R1_001.interleave.fastq.gz', + 'NuQCJob/only-adapter-filtered/NYU_BMS_Melanoma_13059/EP023801B04' + '_S27_L001_R1_001.interleave.fastq.gz', + 'NuQCJob/only-adapter-filtered/NYU_BMS_Melanoma_13059/EP890158A02' + '_S58_L001_R2_001.interleave.fastq.gz', + 'NuQCJob/only-adapter-filtered/NYU_BMS_Melanoma_13059/EP023801B04' + '_S27_L001_R2_001.interleave.fastq.gz' + } + + obs = [] + for root, dirs, files in walk(new_path): + for some_file in files: + some_path = join(root, some_file) + some_path = some_path.replace(self.path(""), "") + obs.append(some_path) + + # confirm that only the samples in NYU_BMS_Melanoma_13059 were + # moved. + self.assertEqual(set(obs), exp) + + def _helper(self, regex, good_names, bad_names): + for good_name in good_names: + substr = regex.search(good_name) + self.assertIsNotNone(substr, msg=f"Regex failed on {good_name}") + + for bad_name in bad_names: + substr = regex.search(bad_name) + self.assertIsNone(substr, msg=f"Regex failed on {bad_name}") + + +if __name__ == "__main__": + unittest.main() diff --git a/tests/test_Pipeline.py b/tests/test_Pipeline.py new file mode 100644 index 00000000..c7046425 --- /dev/null +++ b/tests/test_Pipeline.py @@ -0,0 +1,2473 @@ +import json +import os +from sequence_processing_pipeline.PipelineError import PipelineError +from sequence_processing_pipeline.Pipeline import Pipeline, InstrumentUtils +import unittest +from os import makedirs, walk +from os.path import abspath, basename, join, exists +from functools import partial +import re +from shutil import copy +import pandas as pd +from tempfile import NamedTemporaryFile + + +class TestPipeline(unittest.TestCase): + def setUp(self): + package_root = abspath('./') + + self.path = partial(join, package_root, 'tests', 'data') + self.good_config_file = join( + package_root, 'tests', 'configuration.json') + self.bad_config_file = self.path('bad_configuration.json') + self.invalid_config_file = 'does/not/exist/configuration.json' + self.good_run_id = '211021_A00000_0000_SAMPLE' + # qiita_id is randomly-generated and does not match any known + # existing qiita job_id. + self.qiita_id = '077c4da8-74eb-4184-8860-0207f53623be' + self.invalid_run_id = 'not-sample-sequence-directory' + self.output_file_path = self.path('output_dir') + makedirs(self.output_file_path, exist_ok=True) + self.maxDiff = None + self.good_sample_sheet_path = self.path('good-sample-sheet.csv') + self.good_legacy_sheet_path = self.path('mgv90_test_sheet.csv') + self.mp_sheet_path = self.path('multi-project-sheet.csv') + self.bad_sample_sheet_path = self.path('duplicate_sample-sample-sheet' + '.csv') + self.bad_assay_type_path = self.path('bad-sample-sheet-metagenomics' + '.csv') + self.good_run_dir = self.path(self.good_run_id) + self.runinfo_file = self.path(self.good_run_id, 'RunInfo.xml') + self.rtacomplete_file = self.path(self.good_run_id, 'RTAComplete.txt') + self.good_sheet_w_replicates = self.path('good_sheet_w_replicates.csv') + + # making backups of the files so they can be restored at the end + self.runinfo_file_bk = self.runinfo_file + '.bk' + self.rtacomplete_file_bk = self.rtacomplete_file + '.bk' + + copy(self.runinfo_file, self.runinfo_file_bk) + copy(self.rtacomplete_file, self.rtacomplete_file_bk) + + # most of the tests here were written with the assumption that these + # files already exist. + self.create_runinfo_file() + self.create_rtacomplete_file() + + # read good configuration file at initialization to avoid putting + # most of the test code within 'with open()' expressions. + with open(self.good_config_file, 'r') as f: + self.good_config = json.load(f) + + self.delete_these = [] + + def tearDown(self): + # Pipeline is now the only class aware of these files, hence they + # can be deleted at the end of testing. + self.delete_runinfo_file() + self.delete_rtacomplete_file() + self.delete_more_files() + + # recovering backups + copy(self.runinfo_file_bk, self.runinfo_file) + copy(self.rtacomplete_file_bk, self.rtacomplete_file) + os.remove(self.runinfo_file_bk) + os.remove(self.rtacomplete_file_bk) + + def make_runinfo_file_unreadable(self): + os.chmod(self.runinfo_file, 0o000) + + def make_runinfo_file_readable(self): + os.chmod(self.runinfo_file, 0o777) + + def create_runinfo_file(self, four_reads=False): + # since good sample RunInfo.xml files already exist to support + # other tests, reuse them here. + + f_name = 'RunInfo_Good2.xml' if four_reads else 'RunInfo_Good1.xml' + copy(join('tests/data/', f_name), + self.runinfo_file) + + def delete_runinfo_file(self): + try: + os.remove(self.runinfo_file) + except FileNotFoundError: + # make method idempotent + pass + + def create_rtacomplete_file(self): + with open(self.rtacomplete_file, 'w') as f: + f.write("") + + def delete_rtacomplete_file(self): + try: + os.remove(self.rtacomplete_file) + except FileNotFoundError: + # make method idempotent + pass + + def delete_more_files(self): + for file_path in self.delete_these: + if exists(file_path): + # if file no longer exists, that's okay. + os.remove(file_path) + + def _make_mapping_file(self, output_file_path): + cols = ('sample_name', 'barcode', 'library_construction_protocol', + 'mastermix_lot', 'sample_plate', 'center_project_name', + 'instrument_model', 'tm1000_8_tool', 'well_id_96', + 'tm50_8_tool', 'tm10_8_tool', 'well_id_384', + 'well_description', 'run_prefix', 'run_date', 'center_name', + 'tm300_8_tool', 'extraction_robot', 'qiita_prep_id', + 'experiment_design_description', 'platform', 'water_lot', + 'project_name', 'pcr_primers', 'sequencing_meth', 'plating', + 'orig_name', 'linker', 'runid', 'target_subfragment', 'primer', + 'primer_plate', 'run_center', 'primer_date', 'target_gene', + 'processing_robot', 'extractionkit_lot') + rows = [['1.0', ], ['1e-3', ]] + rows[0].extend(['foo'] * (len(cols) - 1)) + rows[1].extend(['foo'] * (len(cols) - 1)) + df = pd.DataFrame(rows, columns=cols) + df.to_csv(output_file_path, sep='\t', index=False, header=True) + + def test_make_sif_fname(self): + exp = '211021_A00000_0000_SAMPLE_NYU_BMS_Melanoma_13059_blanks.tsv' + obs = Pipeline.make_sif_fname('211021_A00000_0000_SAMPLE', + 'NYU_BMS_Melanoma_13059') + self.assertEqual(exp, obs) + + def test_is_sif_fp(self): + obs1 = Pipeline.is_sif_fp("/path/to/sifs/211021_A00000_0000_SAMPLE_" + "NYU_BMS_Melanoma_13059_blanks.tsv") + self.assertTrue(obs1) + + obs2 = Pipeline.is_sif_fp("/path/to/sifs/211021_A00000_0000_SAMPLE_" + "NYU_BMS_Melanoma_13059_lord_of_the.sif") + self.assertFalse(obs2) + + def test_get_qiita_id_from_sif_fp(self): + exp = "13059" + obs = Pipeline.get_qiita_id_from_sif_fp( + "/path/to/sifs/211021_A00000_0000_SAMPLE_" + "NYU_BMS_Melanoma_13059_blanks.tsv") + self.assertEqual(exp, obs) + + def test_validate_mapping_file_numeric_ids(self): + with NamedTemporaryFile() as tmp: + self._make_mapping_file(tmp.name) + exp = ['1.0', '1e-3'] + pipeline = Pipeline(self.good_config_file, self.good_run_id, + tmp.name, self.output_file_path, self.qiita_id, + Pipeline.AMPLICON_PTYPE) + + # explicitly call _validate_mapping_file() for testing purposes. + # Note that currently this method was already called once during + # the Pipeline object's initialization, implying that tmp.name was + # validated successfully. + obs_df = pipeline._validate_mapping_file(tmp.name) + self.assertEqual(list(obs_df['sample_name']), exp) + + def test_get_sample_names_from_sample_sheet(self): + pipeline = Pipeline(self.good_config_file, self.good_run_id, + self.mp_sheet_path, + self.output_file_path, self.qiita_id, + Pipeline.METAGENOMIC_PTYPE) + + # get all names from all projects in the sample-sheet. + # get all names in project 'Wisconsin_U19_15445' + # get all names in project 'Wisconsin_U19_NA_15446' + # attempt to get names from a project not in the sheet. + # what happens when the fully-qualified project name is used + # (includes qiita_id)? + # get all names in project 'Wisconsin_U19_NA_15446' + + params = [None, 'Wisconsin_U19', 'Wisconsin_U19_NA', 'NotAProject', + 'Wisconsin_U19_15445', 'Wisconsin_U19_NA_15446'] + + exps = [{'3A', '4A', '5B', '6A', '7A', '8A'}, {'3A', '4A', '5B'}, + {'6A', '8A', '7A'}, set(), {'3A', '4A', '5B'}, + {'6A', '8A', '7A'}] + + for param, exp in zip(params, exps): + obs = set(pipeline._get_sample_names_from_sample_sheet(param)) + self.assertEqual(obs, exp) + + def test_get_orig_names_from_sheet_with_replicates(self): + pipeline = Pipeline(self.good_config_file, self.good_run_id, + self.good_sheet_w_replicates, + self.output_file_path, self.qiita_id, + Pipeline.METAGENOMIC_PTYPE) + + obs = pipeline.get_orig_names_from_sheet('Feist_11661') + exp = {'BLANK.43.12G', 'BLANK.43.12H', 'JBI.KHP.HGL.021', + 'JBI.KHP.HGL.022', 'JBI.KHP.HGL.023', 'JBI.KHP.HGL.024', + 'RMA.KHP.rpoS.Mage.Q97D', 'RMA.KHP.rpoS.Mage.Q97E', + 'RMA.KHP.rpoS.Mage.Q97L', 'RMA.KHP.rpoS.Mage.Q97N'} + + self.assertEqual(set(obs), exp) + + def test_required_file_checks(self): + # begin this test by deleting the RunInfo.txt file and verifying that + # Pipeline object will raise an Error. + self.delete_runinfo_file() + + with self.assertRaisesRegex(PipelineError, "required file 'RunInfo.xml" + "' is not present."): + Pipeline(self.good_config_file, self.good_run_id, + self.good_sample_sheet_path, + self.output_file_path, + self.qiita_id, Pipeline.METAGENOMIC_PTYPE) + + # delete RTAComplete.txt and recreate RunInfo.txt file to verify that + # an Error is raised when only RTAComplete.txt is missing. + self.delete_rtacomplete_file() + self.create_runinfo_file() + + with self.assertRaisesRegex(PipelineError, "required file 'RTAComplete" + ".txt' is not present."): + Pipeline(self.good_config_file, self.good_run_id, + self.good_sample_sheet_path, + self.output_file_path, + self.qiita_id, Pipeline.METAGENOMIC_PTYPE) + + # make RunInfo.xml file unreadable and verify that Pipeline object + # raises the expected Error. + self.create_rtacomplete_file() + self.make_runinfo_file_unreadable() + + with self.assertRaisesRegex(PipelineError, "RunInfo.xml is present, bu" + "t not readable"): + Pipeline(self.good_config_file, self.good_run_id, + self.good_sample_sheet_path, + self.output_file_path, + self.qiita_id, Pipeline.METAGENOMIC_PTYPE) + self.make_runinfo_file_readable() + + def test_creation(self): + # Pipeline should assert due to config_file + with self.assertRaises(PipelineError) as e: + Pipeline(self.bad_config_file, + self.good_run_id, + self.good_sample_sheet_path, + self.output_file_path, + self.qiita_id, Pipeline.METAGENOMIC_PTYPE) + + msg = re.sub(r'not a key in .*?/sequence_processing_pipeline', + r'not a key in sequence_processing_pipeline', + str(e.exception)) + self.assertEqual(msg, "'search_paths' is not a key in " + f"{self.path()}/bad_configuration.json") + + # Pipeline should assert due to Assay having a bad value. + with self.assertRaisesRegex(ValueError, "bad-sample-sheet-metagenomics" + ".csv' does not appear to be a" + " valid sample-sheet."): + Pipeline(self.good_config_file, + self.good_run_id, + self.bad_assay_type_path, + self.output_file_path, + self.qiita_id, Pipeline.METAGENOMIC_PTYPE) + + # Pipeline should assert due to an invalid config file path. + with self.assertRaises(PipelineError) as e: + Pipeline(self.invalid_config_file, + self.good_run_id, + self.good_sample_sheet_path, + self.output_file_path, + self.qiita_id, Pipeline.METAGENOMIC_PTYPE) + + self.assertEqual(str(e.exception), 'does/not/exist/configuration.json ' + 'does not exist.') + + # Pipeline should assert on config_file = None + with self.assertRaises(PipelineError) as e: + Pipeline(None, + self.good_run_id, + self.good_sample_sheet_path, + self.output_file_path, + self.qiita_id, Pipeline.METAGENOMIC_PTYPE) + + self.assertEqual(str(e.exception), 'configuration_file_path cannot be ' + 'None') + + # Pipeline should assert due to invalid_run_id + with self.assertRaises(PipelineError) as e: + Pipeline(self.good_config_file, + self.invalid_run_id, + self.good_sample_sheet_path, + self.output_file_path, + self.qiita_id, Pipeline.METAGENOMIC_PTYPE) + + self.assertEqual(str(e.exception), "A run-dir for 'not-sample-sequence" + "-directory' could not be found") + + # Pipeline should assert on run_id = None + with self.assertRaises(PipelineError) as e: + Pipeline(self.good_config_file, + None, + self.good_sample_sheet_path, + self.output_file_path, + self.qiita_id, Pipeline.METAGENOMIC_PTYPE) + + # Pipeline should assert if config file is not valid JSON. + # good_sample_sheet_path is obviously not a valid JSON file. + with self.assertRaisesRegex(PipelineError, "good-sample-sheet.csv is " + "not a valid json file"): + Pipeline(self.good_sample_sheet_path, + self.good_run_id, + self.good_sample_sheet_path, + self.output_file_path, + self.qiita_id, Pipeline.METAGENOMIC_PTYPE) + + bad_json_file = self.path('configuration_profiles', 'bad.json') + self.delete_these.append(bad_json_file) + + # test Error returned when root attribute 'profile' does not exist. + with open(bad_json_file, 'w') as f: + f.write('{ "not_profile": { "instrument_type": "default", ' + '"configuration": { "bcl2fastq": { "nodes": 1, "nprocs": ' + '16, "queue": "qiita", "wallclock_time_in_minutes": 216, ' + '"modules_to_load": [ "bcl2fastq_2.20.0.422" ], ' + '"executable_path": "bcl2fastq", ' + '"per_process_memory_limit": "10gb" } } } }') + + with self.assertRaisesRegex(ValueError, "'profile' is not an attribute" + " in 'tests/data/" + "configuration_profiles/" + "bad.json'"): + Pipeline(self.good_config_file, + self.good_run_id, + self.good_sample_sheet_path, + self.output_file_path, + self.qiita_id, Pipeline.METAGENOMIC_PTYPE) + + # test Error returned when 'instrument_type' does not exist. + bad_json_file = self.path('configuration_profiles', 'bad.json') + + with open(bad_json_file, 'w') as f: + f.write('{ "profile": { "not_instrument_type": "default", ' + '"configuration": { "bcl2fastq": { "nodes": 1, "nprocs": ' + '16, "queue": "qiita", "wallclock_time_in_minutes": 216, ' + '"modules_to_load": [ "bcl2fastq_2.20.0.422" ], ' + '"executable_path": "bcl2fastq", ' + '"per_process_memory_limit": "10gb" } } } }') + + with self.assertRaisesRegex(ValueError, "'instrument_type' is not an " + "attribute in 'tests/" + "data/configuration_profiles/" + "bad.json'"): + Pipeline(self.good_config_file, + self.good_run_id, + self.good_sample_sheet_path, + self.output_file_path, + self.qiita_id, Pipeline.METAGENOMIC_PTYPE) + + # test Error returned when a non-default profile is missing assay_type + bad_json_file = self.path('configuration_profiles', 'bad.json') + self.delete_these.append(bad_json_file) + + with open(bad_json_file, 'w') as f: + f.write('{ "profile": { "instrument_type": "MiSeq", ' + '"configuration": { "bcl2fastq": { "nodes": 1, "nprocs": ' + '16, "queue": "qiita", "wallclock_time_in_minutes": 216, ' + '"modules_to_load": [ "bcl2fastq_2.20.0.422" ], ' + '"executable_path": "bcl2fastq", ' + '"per_process_memory_limit": "10gb" } } } }') + + with self.assertRaisesRegex(ValueError, "'assay_type' is not an " + "attribute in 'tests/" + "data/configuration_profiles/" + "bad.json'"): + Pipeline(self.good_config_file, + self.good_run_id, + self.good_sample_sheet_path, + self.output_file_path, + self.qiita_id, Pipeline.METAGENOMIC_PTYPE) + + def test_sample_sheet_validation(self): + # test successful validation of a good sample-sheet. + # if self.good_sample_sheet_path points to a bad sample-sheet, then + # Pipeline would raise a PipelineError w/warnings and error messages + # contained w/in its 'message' member. + try: + Pipeline(self.good_config_file, self.good_run_id, + self.good_sample_sheet_path, + self.output_file_path, + self.qiita_id, Pipeline.METAGENOMIC_PTYPE) + except PipelineError as e: + self.fail(("test_filter_directories_for_time failed w/PipelineEr" + f"ror: {e.message}")) + + # test unsuccessful validation of a bad sample-sheet + with self.assertRaises(PipelineError) as e: + Pipeline(self.good_config_file, self.good_run_id, + self.bad_sample_sheet_path, + self.output_file_path, + self.qiita_id, Pipeline.METAGENOMIC_PTYPE) + self.assertEqual(str(e.exception), ('Sample-sheet contains errors:\n' + 'A sample already exists with ' + 'lane 1 and sample-id ' + 'EP479894B04')) + + def test_generate_sample_information_files(self): + # test sample-information-file generation. + pipeline = Pipeline(self.good_config_file, self.good_run_id, + self.good_sample_sheet_path, + self.output_file_path, self.qiita_id, + Pipeline.METAGENOMIC_PTYPE) + + paths = pipeline.generate_sample_info_files() + exp = [(f'{self.path()}/output_dir/{self.good_run_id}' + '_NYU_BMS_Melanoma_13059_blanks.tsv'), + (f'{self.path()}/output_dir/{self.good_run_id}' + '_Feist_11661_blanks.tsv'), + (f'{self.path()}/output_dir/{self.good_run_id}' + '_Gerwick_6123_blanks.tsv')] + + self.assertCountEqual(paths, exp) + + # confirm files contain the expected number of lines. + # This is going to be based on the number of samples named 'BLANK*' + # in good-sample-sheet.csv. + exp_lines = {f'{self.good_run_id}_NYU_BMS_Melanoma_13059_blanks.tsv': + 33, + f'{self.good_run_id}_Feist_11661_blanks.tsv': 8, + f'{self.good_run_id}_Gerwick_6123_blanks.tsv': 2} + + exp_first_lines = { + f'{self.good_run_id}_NYU_BMS_Melanoma_13059_blanks.tsv': + 'BLANK1.1A\t2021-10-21\t193\t' + 'Control\tNegative\tSterile w' + 'ater blank\tSterile water blank\turban biome\tres' + 'earch facility\tsterile wate' + 'r\tmisc environment\tUSA:CA:' + 'San Diego\tBLANK1.1A\t32.5\t' + '-117.25\tcontrol blank\tmeta' + 'genome\t256318\tBLANK1.1A\tN' + 'YU_BMS_Melanoma\tTRUE\t' + 'UCSD\tFALSE', + f'{self.good_run_id}_Feist_11661_blanks.tsv': + 'BLANK.40.12G\t2021-10-21\t193\tControl' + '\tNegative\tSterile water blank\tSterile water blank\turban ' + 'biome\tresearch facility\tsterile water' + '\tmisc environment\tUSA:CA:San Diego\tB' + 'LANK.40.12G\t32.5\t-117.25\tcontrol bla' + 'nk\tmetagenome\t256318\tBLANK.40.12G\t' + 'Feist\tTRUE\tUCSD\tFALSE', + f'{self.good_run_id}_Gerwick_6123_blanks.tsv': + 'BLANK.41.12G\t2021-10-21\t193\tControl' + '\tNegative\tSterile water blank\tSterile water blank\turban' + ' biome\tresearch facility\tsterile wat' + 'er\tmisc environment\tUSA:CA:San Diego' + '\tBLANK.41.12G\t32.5\t-117.25\tcontrol' + ' blank\tmetagenome\t256318\tBLANK.41.1' + '2G\tGerwick\tTRUE\tUCSD\tFALSE' + } + + exp_last_lines = { + f'{self.good_run_id}_NYU_BMS_Melanoma_13059_blanks.tsv': + 'BLANK4.4H\t2021-10-21\t193\t' + 'Control\tNegative\tSterile w' + 'ater blank\tSterile water blank\turban biome\tres' + 'earch facility\tsterile wate' + 'r\tmisc environment\tUSA:CA:' + 'San Diego\tBLANK4.4H\t32.5\t' + '-117.25\tcontrol blank\tmeta' + 'genome\t256318\tBLANK4.4H\tN' + 'YU_BMS_Melanoma\tTRUE\t' + 'UCSD\tFALSE', + f'{self.good_run_id}_Feist_11661_blanks.tsv': + 'BLANK.43.12H\t2021-10-21\t193\tControl' + '\tNegative\tSterile water blank\tSterile water blank\turban' + ' biome\tresearch facility\tsterile wat' + 'er\tmisc environment\tUSA:CA:San Diego' + '\tBLANK.43.12H\t32.5\t-117.25\tcontrol' + ' blank\tmetagenome\t256318\tBLANK.43.1' + '2H\tFeist\tTRUE\tUCSD\tFALSE', + f'{self.good_run_id}_Gerwick_6123_blanks.tsv': + 'BLANK.41.12G\t2021-10-21\t193\tContro' + 'l\tNegative\tSterile water blank\tSterile water blank\turb' + 'an biome\tresearch facility\tsterile ' + 'water\tmisc environment\tUSA:CA:San D' + 'iego\tBLANK.41.12G\t32.5\t-117.25\tco' + 'ntrol blank\tmetagenome\t256318\tBLAN' + 'K.41.12G\tGerwick\tTRUE\tUCSD\t' + 'FALSE' + } + + for some_path in paths: + some_name = basename(some_path) + with open(some_path, 'r') as f: + obs_lines = f.readlines() + self.assertEqual(len(obs_lines), exp_lines[some_name]) + # confirm that each file contains the expected header. + header = obs_lines[0].strip() + self.assertEqual(header, '\t'.join(Pipeline.sif_header)) + # confirm that the first line of each file is as expected. + obs = obs_lines[1].strip() + exp = exp_first_lines[some_name] + + self.assertEqual(obs, exp) + + # confirm that the last line of each file is as expected. + obs = obs_lines[-1].strip() + exp = exp_last_lines[some_name] + self.assertEqual(obs, exp) + + def test_generate_sample_information_files_with_additional_meta(self): + # TODO: With recent changes is this needed? + # test sample-information-file generation. + pipeline = Pipeline(self.good_config_file, self.good_run_id, + self.good_sample_sheet_path, + self.output_file_path, self.qiita_id, + Pipeline.METAGENOMIC_PTYPE) + + # create a dataframe with duplicate information to pass to + # generate_sample_information_files(). Confirm that the duplicates + # are dropped. Confirm 'NOTBLANK_999A' is also filtered out. + df = pd.DataFrame(data=[('BLANK999_999A', 'NYU_BMS_Melanoma_13059'), + ('BLANK999_999A', 'NYU_BMS_Melanoma_13059'), + ('NOTBLANK_999A', 'NYU_BMS_Melanoma_13059')], + columns=['sample_name', 'project_name']) + + sif_path = pipeline.generate_sample_info_files(addl_info=df) + + # get the path for the NYU_BMS_Melanoma dataset. + sif_path = [x for x in sif_path if 'NYU_BMS_Melanoma' in x][0] + + exp_first_line = ("BLANK1.1A\t2021-10-21\t193\t" + "Control\tNegative\tSterile water blank\t" + "Sterile water blank\turban biome\t" + "research facility\tsterile water\t" + "misc environment\tUSA:CA:San Diego\t" + "BLANK1.1A\t32.5\t-117.25\tcontrol blank\t" + "metagenome\t256318\tBLANK1.1A\t" + "NYU_BMS_Melanoma\tTRUE\tUCSD\tFALSE") + + exp_last_line = ("BLANK4.4H\t2021-10-21\t193\tControl\tNegative\t" + "Sterile water blank\tSterile water blank\t" + "urban biome\tresearch facility\tsterile water\t" + "misc environment\tUSA:CA:San Diego\tBLANK4.4H\t" + "32.5\t-117.25\tcontrol blank\tmetagenome\t256318\t" + "BLANK4.4H\tNYU_BMS_Melanoma\tTRUE\tUCSD\tFALSE") + + with open(sif_path, 'r') as f: + obs_lines = f.readlines() + + # confirm that each file contains the expected header. + header = obs_lines[0].strip() + self.assertEqual(header, '\t'.join(Pipeline.sif_header)) + + # confirm that the first line of each file is as expected. + obs = obs_lines[1].strip() + exp = exp_first_line + + self.assertEqual(obs, exp) + + # confirm that the last line of each file is as expected. + obs = obs_lines[-1].strip() + exp = exp_last_line + + self.assertEqual(obs, exp) + + def test_get_sample_ids(self): + exp_sample_ids = ['CDPH-SAL__Salmonella__Typhi__MDL-143', + 'CDPH-SAL_Salmonella_Typhi_MDL-144', + 'CDPH-SAL_Salmonella_Typhi_MDL-145', + 'CDPH-SAL_Salmonella_Typhi_MDL-146', + 'CDPH-SAL_Salmonella_Typhi_MDL-147', + 'CDPH-SAL_Salmonella_Typhi_MDL-148', + 'CDPH-SAL_Salmonella_Typhi_MDL-149', + 'CDPH-SAL_Salmonella_Typhi_MDL-150', + 'CDPH-SAL_Salmonella_Typhi_MDL-151', + 'CDPH-SAL_Salmonella_Typhi_MDL-152', + 'CDPH-SAL_Salmonella_Typhi_MDL-153', + 'CDPH-SAL_Salmonella_Typhi_MDL-154', + 'CDPH-SAL_Salmonella_Typhi_MDL-155', + 'CDPH-SAL_Salmonella_Typhi_MDL-156', + 'CDPH-SAL_Salmonella_Typhi_MDL-157', + 'CDPH-SAL_Salmonella_Typhi_MDL-158', + 'CDPH-SAL_Salmonella_Typhi_MDL-159', + 'CDPH-SAL_Salmonella_Typhi_MDL-160', + 'CDPH-SAL_Salmonella_Typhi_MDL-161', + 'CDPH-SAL_Salmonella_Typhi_MDL-162', + 'CDPH-SAL_Salmonella_Typhi_MDL-163', + 'CDPH-SAL_Salmonella_Typhi_MDL-164', + 'CDPH-SAL_Salmonella_Typhi_MDL-165', + 'CDPH-SAL_Salmonella_Typhi_MDL-166', + 'CDPH-SAL_Salmonella_Typhi_MDL-167', + 'CDPH-SAL_Salmonella_Typhi_MDL-168', + 'P21_E_coli_ELI344', 'P21_E_coli_ELI345', + 'P21_E_coli_ELI347', 'P21_E_coli_ELI348', + 'P21_E_coli_ELI349', 'P21_E_coli_ELI350', + 'P21_E_coli_ELI351', 'P21_E_coli_ELI352', + 'P21_E_coli_ELI353', 'P21_E_coli_ELI354', + 'P21_E_coli_ELI355', 'P21_E_coli_ELI357', + 'P21_E_coli_ELI358', 'P21_E_coli_ELI359', + 'P21_E_coli_ELI361', 'P21_E_coli_ELI362', + 'P21_E_coli_ELI363', 'P21_E_coli_ELI364', + 'P21_E_coli_ELI365', 'P21_E_coli_ELI366', + 'P21_E_coli_ELI367', 'P21_E_coli_ELI368', + 'P21_E_coli_ELI369', 'stALE_E_coli_A1_F21_I1_R1', + 'stALE_E_coli_A2_F21_I1_R1', + 'stALE_E_coli_A3_F18_I1_R1', + 'stALE_E_coli_A3_F40_I1_R1', + 'stALE_E_coli_A4_F21_I1_R1', + 'stALE_E_coli_A4_F21_I1_R2', + 'stALE_E_coli_A4_F42_I1_R1', + 'stALE_E_coli_A5_F21_I1_R1', + 'stALE_E_coli_A5_F42_I1_R1', + 'stALE_E_coli_A6_F21_I1_R1', + 'stALE_E_coli_A6_F43_I1_R1', + 'stALE_E_coli_A7_F21_I1_R1', + 'stALE_E_coli_A7_F42_I1_R1', + 'stALE_E_coli_A8_F20_I1_R1', + 'stALE_E_coli_A8_F42_I1_R1', + 'stALE_E_coli_A9_F21_I1_R1', + 'stALE_E_coli_A9_F44_I1_R1', + 'stALE_E_coli_A10_F21_I1_R1', + 'stALE_E_coli_A10_F43_I1_R1', + 'stALE_E_coli_A10_F131_I1_R1', + 'stALE_E_coli_A11_F21_I1_R1', + 'stALE_E_coli_A11_F43_I1_R1', + 'stALE_E_coli_A11_F119_I1_R1', + 'stALE_E_coli_A12_F21_I1_R1', + 'stALE_E_coli_A12_F43_I1_R1', + 'stALE_E_coli_A12_F136_I1_R1', + 'stALE_E_coli_A13_F20_I1_R1', + 'stALE_E_coli_A13_F42_I1_R1', + 'stALE_E_coli_A13_F121_I1_R1', + 'stALE_E_coli_A14_F20_I1_R1', + 'stALE_E_coli_A14_F42_I1_R1', + 'stALE_E_coli_A14_F133_I1_R1', + 'stALE_E_coli_A15_F21_I1_R1', + 'stALE_E_coli_A15_F42_I1_R1', + 'stALE_E_coli_A15_F117_I1_R1', + 'stALE_E_coli_A16_F20_I1_R1', + 'stALE_E_coli_A16_F42_I1_R1', + 'stALE_E_coli_A16_F134_I1_R1', + 'stALE_E_coli_A17_F21_I1_R1', + 'stALE_E_coli_A17_F118_I1_R1', + 'stALE_E_coli_A18_F18_I1_R1', + 'stALE_E_coli_A18_F39_I1_R1', + 'stALE_E_coli_A18_F130_I1_R1', '3A', '4A', + 'BLANK_40_12G', 'BLANK_40_12H', + 'Pputida_JBEI__HGL_Pputida_107_BP6', + 'Pputida_JBEI__HGL_Pputida_108_BP7', + 'Pputida_JBEI__HGL_Pputida_109_BP8', + 'Pputida_JBEI__HGL_Pputida_110_M2', + 'Pputida_JBEI__HGL_Pputida_111_M5', + 'Pputida_TALE__HGL_Pputida_112', + 'Pputida_TALE__HGL_Pputida_113', + 'Pputida_TALE__HGL_Pputida_114', + 'Pputida_TALE__HGL_Pputida_115', + 'Pputida_TALE__HGL_Pputida_116', + 'Pputida_TALE__HGL_Pputida_117', + 'Pputida_TALE__HGL_Pputida_118', + 'Pputida_TALE__HGL_Pputida_119', + 'Pputida_TALE__HGL_Pputida_120', + 'Pputida_TALE__HGL_Pputida_121', + 'Pputida_TALE__HGL_Pputida_122', + 'Pputida_TALE__HGL_Pputida_123', + 'Pputida_TALE__HGL_Pputida_124', + 'Pputida_TALE__HGL_Pputida_125', + 'Pputida_TALE__HGL_Pputida_126', + 'Pputida_TALE__HGL_Pputida_127', + 'Pputida_TALE__HGL_Pputida_128', + 'Pputida_TALE__HGL_Pputida_129', + 'Pputida_TALE__HGL_Pputida_130', + 'Pputida_TALE__HGL_Pputida_131', + 'Pputida_TALE__HGL_Pputida_132', + 'Pputida_TALE__HGL_Pputida_133', + 'Pputida_TALE__HGL_Pputida_134', + 'Pputida_TALE__HGL_Pputida_135', + 'Pputida_TALE__HGL_Pputida_136', + 'Pputida_TALE__HGL_Pputida_137', + 'Pputida_TALE__HGL_Pputida_138', + 'Pputida_TALE__HGL_Pputida_139', + 'Pputida_TALE__HGL_Pputida_140', + 'Pputida_TALE__HGL_Pputida_141', + 'Pputida_TALE__HGL_Pputida_142', + 'Pputida_TALE__HGL_Pputida_143', + 'Pputida_TALE__HGL_Pputida_144', + 'Pputida_PALE__HGL_Pputida_145', + 'Pputida_PALE__HGL_Pputida_146', + 'Pputida_PALE__HGL_Pputida_147', + 'Pputida_PALE__HGL_Pputida_148', + 'Pputida_PALE__HGL_Pputida_149', + 'Pputida_PALE__HGL_Pputida_150', + 'Pputida_PALE__HGL_Pputida_151', + 'Pputida_PALE__HGL_Pputida_152', + 'Pputida_PALE__HGL_Pputida_153', + 'Pputida_PALE__HGL_Pputida_154', + 'Pputida_PALE__HGL_Pputida_155', + 'Pputida_PALE__HGL_Pputida_156', + 'Pputida_PALE__HGL_Pputida_157', + 'Pputida_PALE__HGL_Pputida_158', + 'Pputida_PALE__HGL_Pputida_159', + 'Pputida_PALE__HGL_Pputida_160', + 'Pputida_PALE__HGL_Pputida_161', + 'Pputida_PALE__HGL_Pputida_162', + 'Pputida_PALE__HGL_Pputida_163', + 'Pputida_PALE__HGL_Pputida_164', + 'Pputida_PALE__HGL_Pputida_165', + 'Pputida_PALE__HGL_Pputida_166', + 'Pputida_PALE__HGL_Pputida_167', + 'Pputida_PALE__HGL_Pputida_168', + 'Pputida_PALE__HGL_Pputida_169', + 'Pputida_PALE__HGL_Pputida_170', + 'Pputida_PALE__HGL_Pputida_171', + 'Pputida_PALE__HGL_Pputida_172', + 'Pputida_PALE__HGL_Pputida_173', + 'Pputida_PALE__HGL_Pputida_174', + 'Pputida_PALE__HGL_Pputida_175', + 'Pputida_PALE__HGL_Pputida_176', + 'JM-Metabolic__GN0_2005', 'JM-Metabolic__GN0_2007', + 'JM-Metabolic__GN0_2009', 'JM-Metabolic__GN0_2094', + 'JM-Metabolic__GN0_2099', 'JM-Metabolic__GN0_2148', + 'JM-Metabolic__GN0_2165', 'JM-Metabolic__GN0_2169', + 'JM-Metabolic__GN0_2172', 'JM-Metabolic__GN0_2175', + 'JM-Metabolic__GN0_2183', 'JM-Metabolic__GN0_2215', + 'JM-Metabolic__GN0_2254', 'JM-Metabolic__GN0_2277', + 'JM-Metabolic__GN0_2290', 'JM-Metabolic__GN0_2337', + 'JM-Metabolic__GN0_2317', 'JM-Metabolic__GN0_2354', + 'JM-Metabolic__GN0_2375', 'JM-Metabolic__GN0_2380', + 'JM-Metabolic__GN0_2393', 'JM-Metabolic__GN0_2404', + '5B', '6A', 'BLANK_41_12G', 'BLANK_41_12H', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_4_14', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_4_23', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_4_48', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_6_21', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_6_35', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_10_13', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_10_28', + 'Deoxyribose_PALE_ALE__MG1655_BOP27_10_51', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_18_19', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_18_59', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_18_35', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_20_16', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_20_43', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_20_71', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_22_16', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_22_28', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_22_52', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_24_9', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_24_24', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_24_52', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_26_6', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_26_27', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_26_69', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_28_13', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_28_28', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_28_53', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_30_7', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_30_22', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_30_60', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_32_6', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_32_20', + 'Deoxyribose_PALE_ALE__MG1655_Lib4_32_56', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41', + 'AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50', + 'JM-Metabolic__GN02514', 'JM-Metabolic__GN02529', + 'JM-Metabolic__GN02531', 'JM-Metabolic__GN02567', + 'JM-Metabolic__GN02590', 'JM-Metabolic__GN02657', + 'JM-Metabolic__GN02748', 'JM-Metabolic__GN02766', + 'JM-Metabolic__GN02769', 'JM-Metabolic__GN02787', + 'JM-Metabolic__GN03132', 'JM-Metabolic__GN03218', + 'JM-Metabolic__GN03252', 'JM-Metabolic__GN03409', + 'JM-Metabolic__GN04014', 'JM-Metabolic__GN04094', + 'JM-Metabolic__GN04255', 'JM-Metabolic__GN04306', + 'JM-Metabolic__GN04428', 'JM-Metabolic__GN04488', + 'JM-Metabolic__GN04540', 'JM-Metabolic__GN04563', + 'JM-Metabolic__GN04612', 'JM-Metabolic__GN04665', + 'JM-Metabolic__GN04682', 'JM-Metabolic__GN05002', + 'JM-Metabolic__GN05109', 'JM-Metabolic__GN05128', + 'JM-Metabolic__GN05367', 'JM-Metabolic__GN05377', + '7A', '8A', 'BLANK_42_12G', 'BLANK_42_12H', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153', + 'JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154', + 'JM-Metabolic__GN02424', 'JM-Metabolic__GN02446', + 'JM-Metabolic__GN02449', 'JM-Metabolic__GN02487', + 'JM-Metabolic__GN02501', 'ISB', 'GFR', + 'BLANK_43_12G', + 'BLANK_43_12H', 'RMA_KHP_rpoS_Mage_Q97D', + 'RMA_KHP_rpoS_Mage_Q97L', 'RMA_KHP_rpoS_Mage_Q97N', + 'RMA_KHP_rpoS_Mage_Q97E', 'JBI_KHP_HGL_021', + 'JBI_KHP_HGL_022', 'JBI_KHP_HGL_023', + 'JBI_KHP_HGL_024', 'JBI_KHP_HGL_025', + 'JBI_KHP_HGL_026', 'JBI_KHP_HGL_027', + 'JBI_KHP_HGL_028_Amitesh_soxR', + 'JBI_KHP_HGL_029_Amitesh_oxyR', + 'JBI_KHP_HGL_030_Amitesh_soxR_oxyR', + 'JBI_KHP_HGL_031_Amitesh_rpoS', 'BLANK1_1A', + 'BLANK1_1B', 'BLANK1_1C', 'BLANK1_1D', 'BLANK1_1E', + 'BLANK1_1F', 'BLANK1_1G', 'BLANK1_1H', 'AP581451B02', + 'EP256645B01', 'EP112567B02', 'EP337425B01', + 'LP127890A01', 'EP159692B04', 'EP987683A01', + 'AP959450A03', 'SP464350A04', 'C9', 'ep256643b01', + 'EP121011B01', 'AP616837B04', 'SP506933A04', + 'EP159695B01', 'EP256644B01', 'SP511289A02', + 'EP305735B04', 'SP415030A01', 'AP549681B02', + 'AP549678B01', 'EP260544B04', 'EP202452B01', + 'EP282276B04', 'SP531696A04', 'SP515443A04', + 'SP515763A04', 'EP184255B04', 'SP503615A02', + 'EP260543B04', 'EP768748A04', 'AP309872B03', + 'AP568785B04', 'EP721390A04', 'EP940013A01', + 'EP291979B04', 'EP182065B04', 'EP128904B02', + 'EP915769A04', 'SP464352A03', 'SP365864A04', + 'SP511294A04', 'EP061002B01', 'SP410793A01', + 'SP232077A04', 'EP128910B01', 'AP531397B04', + 'EP043583B01', 'EP230245B01', 'EP606652B04', + 'EP207041B01', 'EP727972A04', 'EP291980B04', + 'EP087938B02', 'SP471496A04', 'SP573823A04', + 'EP393718B01', 'SP612496A01', 'EP032410B02', + 'EP073216B01', 'EP410046B01', 'SP561451A04', + 'EP320438B01', 'SP612495A04', 'EP446604B03', + 'EP446602B01', 'EP182243B02', 'EP333541B04', + 'EP238034B01', 'AP298002B02', 'EP455759B04', + 'EP207042B04', 'LP128479A01', 'LP128476A01', + 'EP316863B03', 'C20', 'lp127896a01', 'SP491907A02', + 'EP182060B03', 'EP422407B01', 'SP573859A04', + 'SP584547A02', 'EP182346B04', 'AP668631B04', + 'EP451428B04', 'LP128538A01', 'SP490298A02', + 'SP573860A01', 'EP032412B02', 'EP163771B01', + 'LP169879A01', 'EP729433A02', 'EP447940B04', + 'SP584551A08', 'EP216516B04', 'EP023808B02', + 'BLANK2_2A', 'BLANK2_2B', 'BLANK2_2C', 'BLANK2_2D', + 'BLANK2_2E', 'BLANK2_2F', 'BLANK2_2G', 'BLANK2_2H', + 'SP573843A04', 'EP683835A01', 'SP573824A04', + 'SP335002A04', 'SP478193A02', 'SP232311A04', + 'SP415021A02', 'SP231630A02', 'SP641029A02', + 'SP232310A04', 'EP617442B01', 'EP587478B04', + 'EP447928B04', 'EP587475B04', 'EP675042B01', + 'EP554513B02', 'EP702221B04', 'AP568787B02', + 'EP054632B01', 'EP121013B01', 'EP649418A02', + 'EP573313B01', 'LP154981A01', 'AP470859B01', + 'LP154986A01', 'AP732307B04', 'EP533426B03', + 'EP587476B04', 'AP696363B02', 'EP587477B04', + 'SP683466A02', 'EP554518B04', 'EP533429B04', + 'EP431570B01', 'EP202095B04', 'EP504030B04', + 'EP207036B01', 'EP393717B01', 'SP491898A02', + 'EP484973B04', 'EP479794B02', 'EP554515B04', + 'SP631994A04', 'EP921593A04', 'AP787247B04', + 'EP090129B04', 'EP447975B02', 'EP212214B01', + 'EP410042B01', 'SP404409A02', 'SP247340A04', + 'AP029018B01', 'EP872341A01', 'AP062219B03', + 'EP790020A02', 'EP808112A04', 'SP404403A02', + 'EP073160B01', 'EP012991B03', 'SP317297A02', + 'EP656055A04', 'EP649623A01', 'EP790019A01', + 'SP257519A04', 'EP808104A01', 'EP808106A01', + 'SP231629A02', 'EP675044A01', 'EP657260A01', + 'EP808110A04', 'AP032413B04', 'EP843906A04', + 'AP173305B04', 'SP231628A02', 'AP173301B04', + 'SP404405A02', 'EP649653A04', 'EP718687A04', + 'AP905750A02', 'EP738468A01', 'C6', 'EP890157A02', + 'SP353893A02', 'EP944059A02', 'EP970005A01', + 'EP927461A04', 'EP808111A03', 'EP927459A04', + 'SP317293A02', 'SP235186A04', 'SP399724A04', + 'EP738469A01', 'SP284095A03', 'C5', 'EP337325B04', + 'EP759450A04', 'BLANK3_3A', 'BLANK3_3B', 'BLANK3_3C', + 'BLANK3_3D', 'BLANK3_3E', 'BLANK3_3F', 'BLANK3_3G', + 'BLANK3_3H', 'AP006367B02', 'EP929277A02', + 'AP324642B04', 'EP786631A04', 'EP657385A04', + 'SP235189A01', 'EP448041B04', 'SP231631A02', + 'SP280481A02', 'AP032412B04', 'EP649737A03', + 'AP967057A04', 'EP876243A04', 'SP229387A04', + 'EP667743A04', 'SP246941A01', 'AP745799A04', + 'SP205732A02', 'SP230382A04', 'SP230380A02', + 'SP230381A01', 'SP205754A01', 'EP606662B04', + 'AP780167B02', 'EP447927B04', 'C18', 'LP191039A01', + 'EP606663B04', 'EP573296B01', 'EP447926B04', + 'LP127767A01', 'EP479266B04', 'LP128543A01', + 'EP479270B03', 'EP921594A04', 'EP554501B04', + 'EP542577B04', 'EP487995B04', 'EP542578B04', + 'EP573310B01', 'EP244366B01', 'EP533389B03', + 'EP244360B01', 'AP911328B01', 'AP481403B02', + '22_001_801_552_503_00', 'EP372981B04', + 'EP447929B04', 'SP573849A04', 'SP577399A02', + 'EP606656B03', 'LP166715A01', 'AP668628B04', + 'C14', 'EP446610B02', 'EP339061B02', 'SP681591A04', + 'EP393712B02', 'EP410041B01', 'SP453872A01', + '22_001_710_503_791_00', + 'LP128540A01', 'EP339053B02', 'EP617443B01', + 'EP190307B01', 'AP795068B04', 'LP128541A01', + 'EP584756B04', 'SP284096A02', 'EP431562B04', + 'EP685640B01', 'EP339059B02', 'EP431575B01', + 'EP379938B01', 'EP529635B02', 'EP554506B04', + 'EP455757B04', 'SP491900A02', 'LP196272A01', + 'SP704319A04', 'EP617441B01', 'AP687591B04', + 'SP640978A02', 'EP981129A02', 'EP455763B04', + 'EP339057B02', 'SP491897A02', 'EP980752B04', + 'LP128539A01', 'EP996831B04', 'EP273332B04', + 'EP483291B04', 'EP393715B01', 'EP617440B01', + 'EP729434A01', 'SP645141A03', 'BLANK4_4A', + 'BLANK4_4B', 'BLANK4_4C', 'BLANK4_4D', 'BLANK4_4E', + 'BLANK4_4F', 'BLANK4_4G', 'BLANK4_4H', 'SP232114A04', + 'EP393714B01', 'EP533388B01', 'EP724905B01', + 'EP282108B01', 'EP282107B01', 'EP001625B01', + 'EP073209B02', 'SP232079A01', 'EP772145A02', + 'AP771472A04', 'AP223470B01', 'SP404412A02', + 'EP772143A02', 'SP408629A01', 'EP749735A07', + 'EP846485A01', 'EP808109A01', 'SP416130A04', + 'EP882752A01', 'AP953594A02', 'AP046324B02', + 'AP891020A04', 'EP790023A01', 'EP657386A01', + 'EP805337A01', 'EP927458A04', 'AP173299B04', + 'EP768164A02', 'EP886422A01', 'AP103463B01', + 'AP744361A02', 'AP065292B01', 'SP257517A04', + 'EP790021A04', 'EP675075A04', 'SP388683A02', + 'SP232309A01', 'EP899038A04', 'EP636802A01', + 'AP046327B02', 'EP905975A04', 'SP410796A02', + 'EP784608A01', 'EP808105A01', 'SP331134A04', + 'EP718688A01', 'SP232270A02', 'EP970001A01', + 'EP001624B01', 'EP868682A01', 'EP927462A02', 'C3', + 'EP890158A02', 'EP023801B04', 'EP400447B04', + 'EP385379B01', 'EP385387B01', 'EP385384B01', + 'SP754514A04', 'SP415025A01', 'SP415023A02', + 'EP400448B04', 'EP479894B04'] + # test sample-information-file generation. + pipeline = Pipeline(self.good_config_file, self.good_run_id, + self.good_sample_sheet_path, + self.output_file_path, self.qiita_id, + Pipeline.METAGENOMIC_PTYPE) + + obs = pipeline.get_sample_ids() + self.assertEqual(sorted(obs), sorted(exp_sample_ids)) + + def test_get_sample_names(self): + exp_sample_ids = ['CDPH-SAL..Salmonella..Typhi..MDL-143', + 'CDPH-SAL.Salmonella.Typhi.MDL-144', + 'CDPH-SAL.Salmonella.Typhi.MDL-145', + 'CDPH-SAL.Salmonella.Typhi.MDL-146', + 'CDPH-SAL.Salmonella.Typhi.MDL-147', + 'CDPH-SAL.Salmonella.Typhi.MDL-148', + 'CDPH-SAL.Salmonella.Typhi.MDL-149', + 'CDPH-SAL.Salmonella.Typhi.MDL-150', + 'CDPH-SAL.Salmonella.Typhi.MDL-151', + 'CDPH-SAL.Salmonella.Typhi.MDL-152', + 'CDPH-SAL.Salmonella.Typhi.MDL-153', + 'CDPH-SAL.Salmonella.Typhi.MDL-154', + 'CDPH-SAL.Salmonella.Typhi.MDL-155', + 'CDPH-SAL.Salmonella.Typhi.MDL-156', + 'CDPH-SAL.Salmonella.Typhi.MDL-157', + 'CDPH-SAL.Salmonella.Typhi.MDL-158', + 'CDPH-SAL.Salmonella.Typhi.MDL-159', + 'CDPH-SAL.Salmonella.Typhi.MDL-160', + 'CDPH-SAL.Salmonella.Typhi.MDL-161', + 'CDPH-SAL.Salmonella.Typhi.MDL-162', + 'CDPH-SAL.Salmonella.Typhi.MDL-163', + 'CDPH-SAL.Salmonella.Typhi.MDL-164', + 'CDPH-SAL.Salmonella.Typhi.MDL-165', + 'CDPH-SAL.Salmonella.Typhi.MDL-166', + 'CDPH-SAL.Salmonella.Typhi.MDL-167', + 'CDPH-SAL.Salmonella.Typhi.MDL-168', + 'P21.E.coli.ELI344', 'P21.E.coli.ELI345', + 'P21.E.coli.ELI347', 'P21.E.coli.ELI348', + 'P21.E.coli.ELI349', 'P21.E.coli.ELI350', + 'P21.E.coli.ELI351', 'P21.E.coli.ELI352', + 'P21.E.coli.ELI353', 'P21.E.coli.ELI354', + 'P21.E.coli.ELI355', 'P21.E.coli.ELI357', + 'P21.E.coli.ELI358', 'P21.E.coli.ELI359', + 'P21.E.coli.ELI361', 'P21.E.coli.ELI362', + 'P21.E.coli.ELI363', 'P21.E.coli.ELI364', + 'P21.E.coli.ELI365', 'P21.E.coli.ELI366', + 'P21.E.coli.ELI367', 'P21.E.coli.ELI368', + 'P21.E.coli.ELI369', 'stALE.E.coli.A1.F21.I1.R1', + 'stALE.E.coli.A2.F21.I1.R1', + 'stALE.E.coli.A3.F18.I1.R1', + 'stALE.E.coli.A3.F40.I1.R1', + 'stALE.E.coli.A4.F21.I1.R1', + 'stALE.E.coli.A4.F21.I1.R2', + 'stALE.E.coli.A4.F42.I1.R1', + 'stALE.E.coli.A5.F21.I1.R1', + 'stALE.E.coli.A5.F42.I1.R1', + 'stALE.E.coli.A6.F21.I1.R1', + 'stALE.E.coli.A6.F43.I1.R1', + 'stALE.E.coli.A7.F21.I1.R1', + 'stALE.E.coli.A7.F42.I1.R1', + 'stALE.E.coli.A8.F20.I1.R1', + 'stALE.E.coli.A8.F42.I1.R1', + 'stALE.E.coli.A9.F21.I1.R1', + 'stALE.E.coli.A9.F44.I1.R1', + 'stALE.E.coli.A10.F21.I1.R1', + 'stALE.E.coli.A10.F43.I1.R1', + 'stALE.E.coli.A10.F131.I1.R1', + 'stALE.E.coli.A11.F21.I1.R1', + 'stALE.E.coli.A11.F43.I1.R1', + 'stALE.E.coli.A11.F119.I1.R1', + 'stALE.E.coli.A12.F21.I1.R1', + 'stALE.E.coli.A12.F43.I1.R1', + 'stALE.E.coli.A12.F136.I1.R1', + 'stALE.E.coli.A13.F20.I1.R1', + 'stALE.E.coli.A13.F42.I1.R1', + 'stALE.E.coli.A13.F121.I1.R1', + 'stALE.E.coli.A14.F20.I1.R1', + 'stALE.E.coli.A14.F42.I1.R1', + 'stALE.E.coli.A14.F133.I1.R1', + 'stALE.E.coli.A15.F21.I1.R1', + 'stALE.E.coli.A15.F42.I1.R1', + 'stALE.E.coli.A15.F117.I1.R1', + 'stALE.E.coli.A16.F20.I1.R1', + 'stALE.E.coli.A16.F42.I1.R1', + 'stALE.E.coli.A16.F134.I1.R1', + 'stALE.E.coli.A17.F21.I1.R1', + 'stALE.E.coli.A17.F118.I1.R1', + 'stALE.E.coli.A18.F18.I1.R1', + 'stALE.E.coli.A18.F39.I1.R1', + 'stALE.E.coli.A18.F130.I1.R1', '3A', '4A', + 'BLANK.40.12G', 'BLANK.40.12H', + 'Pputida.JBEI.HGL.Pputida.107.BP6', + 'Pputida.JBEI.HGL.Pputida.108.BP7', + 'Pputida.JBEI.HGL.Pputida.109.BP8', + 'Pputida.JBEI.HGL.Pputida.110.M2', + 'Pputida.JBEI.HGL.Pputida.111.M5', + 'Pputida.TALE.HGL.Pputida.112', + 'Pputida.TALE.HGL.Pputida.113', + 'Pputida.TALE.HGL.Pputida.114', + 'Pputida.TALE.HGL.Pputida.115', + 'Pputida.TALE.HGL.Pputida.116', + 'Pputida.TALE.HGL.Pputida.117', + 'Pputida.TALE.HGL.Pputida.118', + 'Pputida.TALE.HGL.Pputida.119', + 'Pputida.TALE.HGL.Pputida.120', + 'Pputida.TALE.HGL.Pputida.121', + 'Pputida.TALE.HGL.Pputida.122', + 'Pputida.TALE.HGL.Pputida.123', + 'Pputida.TALE.HGL.Pputida.124', + 'Pputida.TALE.HGL.Pputida.125', + 'Pputida.TALE.HGL.Pputida.126', + 'Pputida.TALE.HGL.Pputida.127', + 'Pputida.TALE.HGL.Pputida.128', + 'Pputida.TALE.HGL.Pputida.129', + 'Pputida.TALE.HGL.Pputida.130', + 'Pputida.TALE.HGL.Pputida.131', + 'Pputida.TALE.HGL.Pputida.132', + 'Pputida.TALE.HGL.Pputida.133', + 'Pputida.TALE.HGL.Pputida.134', + 'Pputida.TALE.HGL.Pputida.135', + 'Pputida.TALE.HGL.Pputida.136', + 'Pputida.TALE.HGL.Pputida.137', + 'Pputida.TALE.HGL.Pputida.138', + 'Pputida.TALE.HGL.Pputida.139', + 'Pputida.TALE.HGL.Pputida.140', + 'Pputida.TALE.HGL.Pputida.141', + 'Pputida.TALE.HGL.Pputida.142', + 'Pputida.TALE.HGL.Pputida.143', + 'Pputida.TALE.HGL.Pputida.144', + 'Pputida.PALE.HGL.Pputida.145', + 'Pputida.PALE.HGL.Pputida.146', + 'Pputida.PALE.HGL.Pputida.147', + 'Pputida.PALE.HGL.Pputida.148', + 'Pputida.PALE.HGL.Pputida.149', + 'Pputida.PALE.HGL.Pputida.150', + 'Pputida.PALE.HGL.Pputida.151', + 'Pputida.PALE.HGL.Pputida.152', + 'Pputida.PALE.HGL.Pputida.153', + 'Pputida.PALE.HGL.Pputida.154', + 'Pputida.PALE.HGL.Pputida.155', + 'Pputida.PALE.HGL.Pputida.156', + 'Pputida.PALE.HGL.Pputida.157', + 'Pputida.PALE.HGL.Pputida.158', + 'Pputida.PALE.HGL.Pputida.159', + 'Pputida.PALE.HGL.Pputida.160', + 'Pputida.PALE.HGL.Pputida.161', + 'Pputida.PALE.HGL.Pputida.162', + 'Pputida.PALE.HGL.Pputida.163', + 'Pputida.PALE.HGL.Pputida.164', + 'Pputida.PALE.HGL.Pputida.165', + 'Pputida.PALE.HGL.Pputida.166', + 'Pputida.PALE.HGL.Pputida.167', + 'Pputida.PALE.HGL.Pputida.168', + 'Pputida.PALE.HGL.Pputida.169', + 'Pputida.PALE.HGL.Pputida.170', + 'Pputida.PALE.HGL.Pputida.171', + 'Pputida.PALE.HGL.Pputida.172', + 'Pputida.PALE.HGL.Pputida.173', + 'Pputida.PALE.HGL.Pputida.174', + 'Pputida.PALE.HGL.Pputida.175', + 'Pputida.PALE.HGL.Pputida.176', + 'JM-Metabolic.GN0.2005', 'JM-Metabolic.GN0.2007', + 'JM-Metabolic.GN0.2009', 'JM-Metabolic.GN0.2094', + 'JM-Metabolic.GN0.2099', 'JM-Metabolic.GN0.2148', + 'JM-Metabolic.GN0.2165', 'JM-Metabolic.GN0.2169', + 'JM-Metabolic.GN0.2172', 'JM-Metabolic.GN0.2175', + 'JM-Metabolic.GN0.2183', 'JM-Metabolic.GN0.2215', + 'JM-Metabolic.GN0.2254', 'JM-Metabolic.GN0.2277', + 'JM-Metabolic.GN0.2290', 'JM-Metabolic.GN0.2337', + 'JM-Metabolic.GN0.2317', 'JM-Metabolic.GN0.2354', + 'JM-Metabolic.GN0.2375', 'JM-Metabolic.GN0.2380', + 'JM-Metabolic.GN0.2393', 'JM-Metabolic.GN0.2404', + '5B', '6A', 'BLANK.41.12G', 'BLANK.41.12H', + 'Deoxyribose.PALE.ALE.MG1655.BOP27.4.14', + 'Deoxyribose.PALE.ALE.MG1655.BOP27.4.23', + 'Deoxyribose.PALE.ALE.MG1655.BOP27.4.48', + 'Deoxyribose.PALE.ALE.MG1655.BOP27.6.21', + 'Deoxyribose.PALE.ALE.MG1655.BOP27.6.35', + 'Deoxyribose.PALE.ALE.MG1655.BOP27.10.13', + 'Deoxyribose.PALE.ALE.MG1655.BOP27.10.28', + 'Deoxyribose.PALE.ALE.MG1655.BOP27.10.51', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.18.19', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.18.59', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.18.35', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.20.16', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.20.43', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.20.71', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.22.16', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.22.28', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.22.52', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.24.9', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.24.24', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.24.52', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.26.6', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.26.27', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.26.69', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.28.13', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.28.28', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.28.53', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.30.7', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.30.22', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.30.60', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.32.6', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.32.20', + 'Deoxyribose.PALE.ALE.MG1655.Lib4.32.56', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.1.24', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.1.57', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.1.69', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.3.23', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.3.50', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.3.61', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.5.22', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.5.36', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.5.46', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.7.23', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.7.41', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.7.51', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.17.25', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.17.58', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.17.64', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.19.25', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.19.55', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.19.63', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.21.23', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.21.46', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.21.51', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.29.25', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.29.49', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.29.57', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.31.24', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.31.42', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.31.62', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.33.21', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.33.41', + 'AB5075.AZM.TALE.in.MHB.A.baumannii.AB5075.WT.33.50', + 'JM-Metabolic.GN02514', 'JM-Metabolic.GN02529', + 'JM-Metabolic.GN02531', 'JM-Metabolic.GN02567', + 'JM-Metabolic.GN02590', 'JM-Metabolic.GN02657', + 'JM-Metabolic.GN02748', 'JM-Metabolic.GN02766', + 'JM-Metabolic.GN02769', 'JM-Metabolic.GN02787', + 'JM-Metabolic.GN03132', 'JM-Metabolic.GN03218', + 'JM-Metabolic.GN03252', 'JM-Metabolic.GN03409', + 'JM-Metabolic.GN04014', 'JM-Metabolic.GN04094', + 'JM-Metabolic.GN04255', 'JM-Metabolic.GN04306', + 'JM-Metabolic.GN04428', 'JM-Metabolic.GN04488', + 'JM-Metabolic.GN04540', 'JM-Metabolic.GN04563', + 'JM-Metabolic.GN04612', 'JM-Metabolic.GN04665', + 'JM-Metabolic.GN04682', 'JM-Metabolic.GN05002', + 'JM-Metabolic.GN05109', 'JM-Metabolic.GN05128', + 'JM-Metabolic.GN05367', 'JM-Metabolic.GN05377', + '7A', '8A', 'BLANK.42.12G', 'BLANK.42.12H', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0326', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0327', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0328', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0329', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0330', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0352', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0353', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0354', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0355', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0356', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0357', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0364', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0366', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0367', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0368', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0369', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0370', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0371', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0372', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0373', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0374', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0375', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0376', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0377', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0378', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0380', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0381', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0382', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0383', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0384', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0385', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0386', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0387', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0388', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0389', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0390', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0391', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0392', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0393', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0394', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0395', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0396', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0397', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0398', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0399', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0400', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0401', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0402', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0403', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0404', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0405', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0406', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0407', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0408', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0409', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0417', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0418', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0419', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0420', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0421', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0473', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0474', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0483', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0484', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0485', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0486', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0516', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0517', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0518', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0519', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0520', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0521', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0522', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0523', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0524', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-B0525', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-R08624', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-R08704', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-R10727', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-R11044', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-R11078', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-R11101', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-R11102', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-R11103', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-R11135', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-R11153', + 'JM-MEC.Staphylococcus.aureusstrain.BERTI-R11154', + 'JM-Metabolic.GN02424', 'JM-Metabolic.GN02446', + 'JM-Metabolic.GN02449', 'JM-Metabolic.GN02487', + 'JM-Metabolic.GN02501', 'ISB', 'GFR', + 'BLANK.43.12G', 'BLANK.43.12H', + 'RMA.KHP.rpoS.Mage.Q97D', 'RMA.KHP.rpoS.Mage.Q97L', + 'RMA.KHP.rpoS.Mage.Q97N', 'RMA.KHP.rpoS.Mage.Q97E', + 'JBI.KHP.HGL.021', 'JBI.KHP.HGL.022', + 'JBI.KHP.HGL.023', 'JBI.KHP.HGL.024', + 'JBI.KHP.HGL.025', 'JBI.KHP.HGL.026', + 'JBI.KHP.HGL.027', 'JBI.KHP.HGL.028.Amitesh.soxR', + 'JBI.KHP.HGL.029.Amitesh.oxyR', + 'JBI.KHP.HGL.030.Amitesh.soxR.oxyR', + 'JBI.KHP.HGL.031.Amitesh.rpoS', 'BLANK1.1A', + 'BLANK1.1B', 'BLANK1.1C', 'BLANK1.1D', 'BLANK1.1E', + 'BLANK1.1F', 'BLANK1.1G', 'BLANK1.1H', 'AP581451B02', + 'EP256645B01', 'EP112567B02', 'EP337425B01', + 'LP127890A01', 'EP159692B04', 'EP987683A01', + 'AP959450A03', 'SP464350A04', 'C9', 'ep256643b01', + 'EP121011B01', 'AP616837B04', 'SP506933A04', + 'EP159695B01', 'EP256644B01', 'SP511289A02', + 'EP305735B04', 'SP415030A01', 'AP549681B02', + 'AP549678B01', 'EP260544B04', 'EP202452B01', + 'EP282276B04', 'SP531696A04', 'SP515443A04', + 'SP515763A04', 'EP184255B04', 'SP503615A02', + 'EP260543B04', 'EP768748A04', 'AP309872B03', + 'AP568785B04', 'EP721390A04', 'EP940013A01', + 'EP291979B04', 'EP182065B04', 'EP128904B02', + 'EP915769A04', 'SP464352A03', 'SP365864A04', + 'SP511294A04', 'EP061002B01', 'SP410793A01', + 'SP232077A04', 'EP128910B01', 'AP531397B04', + 'EP043583B01', 'EP230245B01', 'EP606652B04', + 'EP207041B01', 'EP727972A04', 'EP291980B04', + 'EP087938B02', 'SP471496A04', 'SP573823A04', + 'EP393718B01', 'SP612496A01', 'EP032410B02', + 'EP073216B01', 'EP410046B01', 'SP561451A04', + 'EP320438B01', 'SP612495A04', 'EP446604B03', + 'EP446602B01', 'EP182243B02', 'EP333541B04', + 'EP238034B01', 'AP298002B02', 'EP455759B04', + 'EP207042B04', 'LP128479A01', 'LP128476A01', + 'EP316863B03', 'C20', 'lp127896a01', 'SP491907A02', + 'EP182060B03', 'EP422407B01', 'SP573859A04', + 'SP584547A02', 'EP182346B04', 'AP668631B04', + 'EP451428B04', 'LP128538A01', 'SP490298A02', + 'SP573860A01', 'EP032412B02', 'EP163771B01', + 'LP169879A01', 'EP729433A02', 'EP447940B04', + 'SP584551A08', 'EP216516B04', 'EP023808B02', + 'BLANK2.2A', 'BLANK2.2B', 'BLANK2.2C', 'BLANK2.2D', + 'BLANK2.2E', 'BLANK2.2F', 'BLANK2.2G', 'BLANK2.2H', + 'SP573843A04', 'EP683835A01', 'SP573824A04', + 'SP335002A04', 'SP478193A02', 'SP232311A04', + 'SP415021A02', 'SP231630A02', 'SP641029A02', + 'SP232310A04', 'EP617442B01', 'EP587478B04', + 'EP447928B04', 'EP587475B04', 'EP675042B01', + 'EP554513B02', 'EP702221B04', 'AP568787B02', + 'EP054632B01', 'EP121013B01', 'EP649418A02', + 'EP573313B01', 'LP154981A01', 'AP470859B01', + 'LP154986A01', 'AP732307B04', 'EP533426B03', + 'EP587476B04', 'AP696363B02', 'EP587477B04', + 'SP683466A02', 'EP554518B04', 'EP533429B04', + 'EP431570B01', 'EP202095B04', 'EP504030B04', + 'EP207036B01', 'EP393717B01', 'SP491898A02', + 'EP484973B04', 'EP479794B02', 'EP554515B04', + 'SP631994A04', 'EP921593A04', 'AP787247B04', + 'EP090129B04', 'EP447975B02', 'EP212214B01', + 'EP410042B01', 'SP404409A02', 'SP247340A04', + 'AP029018B01', 'EP872341A01', 'AP062219B03', + 'EP790020A02', 'EP808112A04', 'SP404403A02', + 'EP073160B01', 'EP012991B03', 'SP317297A02', + 'EP656055A04', 'EP649623A01', 'EP790019A01', + 'SP257519A04', 'EP808104A01', 'EP808106A01', + 'SP231629A02', 'EP675044A01', 'EP657260A01', + 'EP808110A04', 'AP032413B04', 'EP843906A04', + 'AP173305B04', 'SP231628A02', 'AP173301B04', + 'SP404405A02', 'EP649653A04', 'EP718687A04', + 'AP905750A02', 'EP738468A01', 'C6', 'EP890157A02', + 'SP353893A02', 'EP944059A02', 'EP970005A01', + 'EP927461A04', 'EP808111A03', 'EP927459A04', + 'SP317293A02', 'SP235186A04', 'SP399724A04', + 'EP738469A01', 'SP284095A03', 'C5', 'EP337325B04', + 'EP759450A04', 'BLANK3.3A', 'BLANK3.3B', 'BLANK3.3C', + 'BLANK3.3D', 'BLANK3.3E', 'BLANK3.3F', 'BLANK3.3G', + 'BLANK3.3H', 'AP006367B02', 'EP929277A02', + 'AP324642B04', 'EP786631A04', 'EP657385A04', + 'SP235189A01', 'EP448041B04', 'SP231631A02', + 'SP280481A02', 'AP032412B04', 'EP649737A03', + 'AP967057A04', 'EP876243A04', 'SP229387A04', + 'EP667743A04', 'SP246941A01', 'AP745799A04', + 'SP205732A02', 'SP230382A04', 'SP230380A02', + 'SP230381A01', 'SP205754A01', 'EP606662B04', + 'AP780167B02', 'EP447927B04', 'C18', 'LP191039A01', + 'EP606663B04', 'EP573296B01', 'EP447926B04', + 'LP127767A01', 'EP479266B04', 'LP128543A01', + 'EP479270B03', 'EP921594A04', 'EP554501B04', + 'EP542577B04', 'EP487995B04', 'EP542578B04', + 'EP573310B01', 'EP244366B01', 'EP533389B03', + 'EP244360B01', 'AP911328B01', 'AP481403B02', + '22.001.801.552.503.00', 'EP372981B04', + 'EP447929B04', 'SP573849A04', 'SP577399A02', + 'EP606656B03', 'LP166715A01', 'AP668628B04', 'C14', + 'EP446610B02', 'EP339061B02', 'SP681591A04', + 'EP393712B02', 'EP410041B01', 'SP453872A01', + '22.001.710.503.791.00', 'LP128540A01', + 'EP339053B02', 'EP617443B01', 'EP190307B01', + 'AP795068B04', 'LP128541A01', 'EP584756B04', + 'SP284096A02', 'EP431562B04', 'EP685640B01', + 'EP339059B02', 'EP431575B01', 'EP379938B01', + 'EP529635B02', 'EP554506B04', 'EP455757B04', + 'SP491900A02', 'LP196272A01', 'SP704319A04', + 'EP617441B01', 'AP687591B04', 'SP640978A02', + 'EP981129A02', 'EP455763B04', 'EP339057B02', + 'SP491897A02', 'EP980752B04', 'LP128539A01', + 'EP996831B04', 'EP273332B04', 'EP483291B04', + 'EP393715B01', 'EP617440B01', 'EP729434A01', + 'SP645141A03', 'BLANK4.4A', 'BLANK4.4B', 'BLANK4.4C', + 'BLANK4.4D', 'BLANK4.4E', 'BLANK4.4F', 'BLANK4.4G', + 'BLANK4.4H', 'SP232114A04', 'EP393714B01', + 'EP533388B01', 'EP724905B01', 'EP282108B01', + 'EP282107B01', 'EP001625B01', 'EP073209B02', + 'SP232079A01', 'EP772145A02', 'AP771472A04', + 'AP223470B01', 'SP404412A02', 'EP772143A02', + 'SP408629A01', 'EP749735A07', 'EP846485A01', + 'EP808109A01', 'SP416130A04', 'EP882752A01', + 'AP953594A02', 'AP046324B02', 'AP891020A04', + 'EP790023A01', 'EP657386A01', 'EP805337A01', + 'EP927458A04', 'AP173299B04', 'EP768164A02', + 'EP886422A01', 'AP103463B01', 'AP744361A02', + 'AP065292B01', 'SP257517A04', 'EP790021A04', + 'EP675075A04', 'SP388683A02', 'SP232309A01', + 'EP899038A04', 'EP636802A01', 'AP046327B02', + 'EP905975A04', 'SP410796A02', 'EP784608A01', + 'EP808105A01', 'SP331134A04', 'EP718688A01', + 'SP232270A02', 'EP970001A01', 'EP001624B01', + 'EP868682A01', 'EP927462A02', 'C3', 'EP890158A02', + 'EP023801B04', 'EP400447B04', 'EP385379B01', + 'EP385387B01', 'EP385384B01', 'SP754514A04', + 'SP415025A01', 'SP415023A02', 'EP400448B04', + 'EP479894B04'] + + # test sample-information-file generation. + pipeline = Pipeline(self.good_config_file, self.good_run_id, + self.good_sample_sheet_path, + self.output_file_path, self.qiita_id, + Pipeline.METAGENOMIC_PTYPE) + + obs = pipeline.get_sample_names() + + self.assertEqual(sorted(obs), sorted(exp_sample_ids)) + + exp = {'3A', '4A', '5B', '6A', 'BLANK.41.12G', '7A', '8A', 'ISB', + 'GFR'} + + obs = set(pipeline.get_sample_names('Gerwick')) + self.assertEqual(obs, exp) + + def test_get_project_info(self): + exp_proj_info = [ + {'project_name': 'NYU_BMS_Melanoma_13059', 'qiita_id': '13059', + 'contains_replicates': False}, + {'project_name': 'Feist_11661', 'qiita_id': '11661', + 'contains_replicates': False}, + {'project_name': 'Gerwick_6123', 'qiita_id': '6123', + 'contains_replicates': False}] + + exp_project_names = ['NYU_BMS_Melanoma_13059', 'Feist_11661', + 'Gerwick_6123'] + + # test sample-information-file generation. + pipeline = Pipeline(self.good_config_file, self.good_run_id, + self.good_sample_sheet_path, + self.output_file_path, self.qiita_id, + Pipeline.METAGENOMIC_PTYPE) + + obs_proj_info = pipeline.get_project_info() + + obs_project_names = [] + for d in obs_proj_info: + obs_project_names.append(d['project_name']) + + self.assertEqual(sorted(obs_project_names), sorted(exp_project_names)) + + for exp_d in exp_proj_info: + for obs_d in obs_proj_info: + if obs_d['project_name'] == exp_d['project_name']: + self.assertDictEqual(obs_d, exp_d) + break + + # repeat test, but set short_names to True and confirm that the Qiita + # IDs are not part of the project_names. + exp_project_names = ['NYU_BMS_Melanoma', 'Feist', 'Gerwick'] + + obs_proj_info = pipeline.get_project_info(short_names=True) + + obs_project_names = [] + for d in obs_proj_info: + obs_project_names.append(d['project_name']) + + self.assertEqual(sorted(obs_project_names), sorted(exp_project_names)) + + pipeline = Pipeline(self.good_config_file, self.good_run_id, + self.good_sheet_w_replicates, + self.output_file_path, self.qiita_id, + Pipeline.METAGENOMIC_PTYPE) + + obs_proj_info = pipeline.get_project_info() + + # assert value is boolean type True, even though the method no longer + # silently converts string values to bool. + self.assertTrue(obs_proj_info[0]['contains_replicates']) + + def test_configuration_profiles(self): + pipeline = Pipeline(self.good_config_file, self.good_run_id, + self.good_sample_sheet_path, + self.output_file_path, self.qiita_id, + Pipeline.METAGENOMIC_PTYPE) + + obs = pipeline.config_profile['profile'] + + # assert a profile matching self.good_sample_sheet_path was found. + self.assertEqual(obs['instrument_type'], "MiSeq") + self.assertEqual(obs['assay_type'], "Metagenomic") + + obs = obs['configuration'] + + # sample novaseq 6000/metagenomic profile doesn't contain settings for + # bcl-convert and qc. Make sure that these settings exist in the final + # output and make sure they are set to the default values found in + # default.json. + self.assertEqual(obs['bcl-convert']['nprocs'], 16) + + # assert increased values over default found in novaseq 6000/ + # metagenomic profile are found in the final configuration as well. + self.assertEqual(obs['bcl2fastq']['nodes'], 2) + self.assertEqual(obs['bcl2fastq']['nprocs'], 62) + self.assertEqual(obs['nu-qc']['nodes'], 2) + self.assertEqual(obs['nu-qc']['wallclock_time_in_minutes'], 2028) + self.assertEqual(obs['nu-qc']['cpus_per_task'], 32) + + def test_parse_project_name(self): + # test sample-information-file generation. + pipeline = Pipeline(self.good_config_file, self.good_run_id, + self.good_sample_sheet_path, + self.output_file_path, self.qiita_id, + Pipeline.METAGENOMIC_PTYPE) + + tests = { + 'True': [('NYU_BMS_Melanoma_13059', ('NYU_BMS_Melanoma', '13059')), + ('Feist_11661', ('Feist', '11661')), + ('Gerwick_6123', ('Gerwick', '6123')), + ('bar.baz_123', ('bar.baz', '123')), + ('Foobar', None), + ('', None), + (None, None)], + 'False': [('NYU_BMS_Mel_13059', ('NYU_BMS_Mel_13059', '13059')), + ('Feist_11661', ('Feist_11661', '11661')), + ('Gerwick_6123', ('Gerwick_6123', '6123')), + ('bar.baz_123', ('bar.baz_123', '123')), + ('Foobar', None), + ('', None), + (None, None)] + } + + for t_set in tests: + for test, exp in tests[t_set]: + if exp is None: + with self.assertRaises(ValueError): + pipeline._parse_project_name(test, t_set == 'True') + else: + obs = pipeline._parse_project_name(test, t_set == 'True') + self.assertEqual(obs, exp) + + def test_identify_reserved_words(self): + pipeline = Pipeline(self.good_config_file, self.good_run_id, + self.good_sample_sheet_path, + self.output_file_path, self.qiita_id, + Pipeline.METAGENOMIC_PTYPE) + + # assert that arbitrary strings are not reserved. + obs = pipeline.identify_reserved_words(['NOT_A_RESERVED_WORD', + 'ANOTHER_WORD']) + self.assertEqual(obs, []) + + # assert that 'well_id_384' is a reserved word. + obs = pipeline.identify_reserved_words(['well_id_384', + 'NOT_A_RESERVED_WORD']) + + self.assertEqual(obs, ['well_id_384']) + + # create new pipeline using a/legacy (v90) metagenomic sample-sheet. + pipeline = Pipeline(self.good_config_file, self.good_run_id, + self.good_legacy_sheet_path, + self.output_file_path, self.qiita_id, + Pipeline.METAGENOMIC_PTYPE) + + # assert that for legacy sample-sheets, well_id_384 is NOT a reserved + # word and the appropriate reserved word is 'Sample_well'. + obs = pipeline.identify_reserved_words(['well_id_384', + 'NOT_A_RESERVED_WORD', + 'Sample_well', + 'Sample_Well']) + + self.assertEqual(obs, ['sample_well']) + + +class TestAmpliconPipeline(unittest.TestCase): + def setUp(self): + package_root = abspath('./') + self.path = partial(join, package_root, 'tests', 'data') + self.good_config_file = join( + package_root, 'tests', 'configuration.json') + self.bad_config_file = self.path('bad_configuration.json') + self.invalid_config_file = 'does/not/exist/configuration.json' + self.good_run_id = '211021_A00000_0000_SAMPLE' + # qiita_id is randomly-generated and does not match any known + # existing qiita job_id. + self.qiita_id = '077c4da8-74eb-4184-8860-0207f53623be' + self.invalid_run_id = 'not-sample-sequence-directory' + self.output_file_path = self.path('output_dir') + makedirs(self.output_file_path, exist_ok=True) + self.maxDiff = None + self.good_mapping_file_path = self.path('good-mapping-file.txt') + self.mf_missing_column = self.path('mf-missing-column.txt') + self.mf_duplicate_sample = self.path('mf-duplicate-sample.txt') + self.good_run_dir = self.path(self.good_run_id) + self.runinfo_file = self.path(self.good_run_id, 'RunInfo.xml') + self.rtacomplete_file = self.path(self.good_run_id, 'RTAComplete.txt') + self.sample_sheet_path = self.path('good-sample-sheet.csv') + + # making backups of the files so they can be restored at the end + self.runinfo_file_bk = self.runinfo_file + '.bk' + self.rtacomplete_file_bk = self.rtacomplete_file + '.bk' + copy(self.runinfo_file, self.runinfo_file_bk) + copy(self.rtacomplete_file, self.rtacomplete_file_bk) + + # most of the tests here were written with the assumption that these + # files already exist. + self.create_runinfo_file() + self.create_rtacomplete_file() + + # read good configuration file at initialization to avoid putting + # most of the test code within 'with open()' expressions. + with open(self.good_config_file, 'r') as f: + self.good_config = json.load(f) + + def tearDown(self): + # Pipeline is now the only class aware of these files, hence they + # can be deleted at the end of testing. + self.delete_runinfo_file() + self.delete_rtacomplete_file() + + copy(self.runinfo_file_bk, self.runinfo_file) + copy(self.rtacomplete_file_bk, self.rtacomplete_file) + + def make_runinfo_file_unreadable(self): + os.chmod(self.runinfo_file, 0o000) + + def make_runinfo_file_readable(self): + os.chmod(self.runinfo_file, 0o777) + + def create_runinfo_file(self, four_reads=False): + # since good sample RunInfo.xml files already exist to support + # other tests, reuse them here. + + f_name = 'RunInfo_Good2.xml' if four_reads else 'RunInfo_Good1.xml' + copy(join('tests/data/', f_name), + self.runinfo_file) + + def delete_runinfo_file(self): + try: + os.remove(self.runinfo_file) + except FileNotFoundError: + # make method idempotent + pass + + def create_rtacomplete_file(self): + with open(self.rtacomplete_file, 'w') as f: + f.write("") + + def delete_rtacomplete_file(self): + try: + os.remove(self.rtacomplete_file) + except FileNotFoundError: + # make method idempotent + pass + + def test_required_file_checks(self): + # begin this test by deleting the RunInfo.txt file and verifying that + # Pipeline object will raise an Error. + self.delete_runinfo_file() + + with self.assertRaisesRegex(PipelineError, "required file 'RunInfo.xml" + "' is not present."): + Pipeline(self.good_config_file, self.good_run_id, + self.good_mapping_file_path, + self.output_file_path, + self.qiita_id, Pipeline.AMPLICON_PTYPE) + + # delete RTAComplete.txt and recreate RunInfo.txt file to verify that + # an Error is raised when only RTAComplete.txt is missing. + self.delete_rtacomplete_file() + self.create_runinfo_file() + + with self.assertRaisesRegex(PipelineError, "required file 'RTAComplete" + ".txt' is not present."): + Pipeline(self.good_config_file, self.good_run_id, + self.good_mapping_file_path, + self.output_file_path, + self.qiita_id, Pipeline.AMPLICON_PTYPE) + + # make RunInfo.xml file unreadable and verify that Pipeline object + # raises the expected Error. + self.create_rtacomplete_file() + self.make_runinfo_file_unreadable() + + with self.assertRaisesRegex(PipelineError, "RunInfo.xml is present, " + "but not readable"): + Pipeline(self.good_config_file, self.good_run_id, + self.good_mapping_file_path, self.output_file_path, + self.qiita_id, Pipeline.AMPLICON_PTYPE) + self.make_runinfo_file_readable() + + def test_creation(self): + # Pipeline should assert due to config_file + with self.assertRaises(PipelineError) as e: + Pipeline(self.bad_config_file, + self.good_run_id, + self.good_mapping_file_path, + self.output_file_path, + self.qiita_id, Pipeline.AMPLICON_PTYPE) + + msg = re.sub(r'not a key in .*?/sequence_processing_pipeline', + r'not a key in sequence_processing_pipeline', + str(e.exception)) + self.assertEqual(msg, "'search_paths' is not a key in " + f"{self.path()}/bad_configuration.json") + + # Pipeline should assert due to an invalid config file path. + with self.assertRaises(PipelineError) as e: + Pipeline(self.invalid_config_file, + self.good_run_id, + self.good_mapping_file_path, + self.output_file_path, + self.qiita_id, Pipeline.AMPLICON_PTYPE) + + self.assertEqual(str(e.exception), 'does/not/exist/configuration.json ' + 'does not exist.') + + # Pipeline should assert on config_file = None + with self.assertRaises(PipelineError) as e: + Pipeline(None, + self.good_run_id, + self.good_mapping_file_path, + self.output_file_path, + self.qiita_id, Pipeline.AMPLICON_PTYPE) + + self.assertEqual(str(e.exception), 'configuration_file_path cannot be ' + 'None') + + # Pipeline should assert due to invalid_run_id + with self.assertRaises(PipelineError) as e: + Pipeline(self.good_config_file, + self.invalid_run_id, + self.good_mapping_file_path, + self.output_file_path, + self.qiita_id, Pipeline.AMPLICON_PTYPE) + + self.assertEqual(str(e.exception), "A run-dir for 'not-sample-sequence" + "-directory' could not be found") + + # Pipeline should assert on run_id = None + with self.assertRaises(PipelineError) as e: + Pipeline(self.good_config_file, + None, + self.good_mapping_file_path, + self.output_file_path, + self.qiita_id, Pipeline.AMPLICON_PTYPE) + + def test_mapping_file_validation(self): + # test successful validation of a good mapping-file. + try: + Pipeline(self.good_config_file, self.good_run_id, + self.good_mapping_file_path, + self.output_file_path, + self.qiita_id, Pipeline.AMPLICON_PTYPE) + except PipelineError as e: + self.fail(("test_filter_directories_for_time failed w/PipelineEr" + f"ror: {e.message}")) + + # test unsuccessful validation of a bad mapping-file. + with self.assertRaises(PipelineError) as e: + Pipeline(self.good_config_file, self.good_run_id, + self.mf_missing_column, + self.output_file_path, + self.qiita_id, Pipeline.AMPLICON_PTYPE) + self.assertEqual(str(e.exception), ('Mapping-file is missing ' + 'columns: tm10_8_tool, ' + 'tm50_8_tool, well_id_384')) + + # test unsuccessful validation of a bad mapping-file. + with self.assertRaises(PipelineError) as e: + Pipeline(self.good_config_file, self.good_run_id, + self.mf_duplicate_sample, + self.output_file_path, + self.qiita_id, Pipeline.AMPLICON_PTYPE) + self.assertEqual(str(e.exception), ("Mapping-file contains duplicate " + "columns: ['barcode', 'Barcode']")) + + def test_is_mapping_file(self): + # assert that a good sample-sheet is not a mapping-file + self.assertFalse(Pipeline.is_mapping_file(self.sample_sheet_path)) + # assert that a good mapping-file returns correctly + self.assertTrue(Pipeline.is_mapping_file(self.good_mapping_file_path)) + # assert that a mapping-file w/duplicate samples is still considered + # a mapping file. + self.assertTrue(Pipeline.is_mapping_file(self.mf_duplicate_sample)) + # assert that a mapping-file w/a missing columbn is still considered + # a mapping file. + self.assertTrue(Pipeline.is_mapping_file(self.mf_missing_column)) + + def test_is_sample_sheet(self): + # assert that a good sample-sheet returns correctly. + self.assertTrue(Pipeline.is_sample_sheet(self.sample_sheet_path)) + # assert that a good mapping-file is not a sample-sheet. + self.assertFalse(Pipeline.is_sample_sheet(self.good_mapping_file_path)) + + def test_generate_sample_information_files(self): + # test sample-information-file generation. + pipeline = Pipeline(self.good_config_file, self.good_run_id, + self.good_mapping_file_path, + self.output_file_path, + self.qiita_id, + Pipeline.AMPLICON_PTYPE) + paths = pipeline.generate_sample_info_files() + + exp = [(f'{self.path()}/output_dir/{self.good_run_id}' + '_ABTX_20230208_ABTX_11052_blanks.tsv')] + + self.assertCountEqual(paths, exp) + + # generate_sample_information_file() remains 95% the same as before. + # a few lines of code at the beginning of the method generate lists + # of samples and projects from the mapping file versus a sample- + # sheet. As long as the file is being generated, additional checks + # aren't needed. + + def test_get_sample_ids(self): + exp_sample_ids = ['11.1.21.RK.FH', '11.1.21.RK.LH', + '11.1.21.RK.RH', '11.10.21.RK.FH', + '11.10.21.RK.LH', '11.10.21.RK.RH', + '11.12.21.RK.FH', '11.12.21.RK.LH', + '11.12.21.RK.RH', '11.13.21.RK.FH', + '11.13.21.RK.LH', '11.13.21.RK.RH', + '11.17.21.RK.FH', '11.17.21.RK.LH', + '11.17.21.RK.RH', '11.2.21.RK.FH', + '11.2.21.RK.LH', '11.2.21.RK.RH', + '11.3.21.RK.FH', '11.3.21.RK.LH', + '11.3.21.RK.RH', '11.4.21.RK.FH', + '11.4.21.RK.LH', '11.4.21.RK.RH', + '11.5.21.RK.FH', '11.5.21.RK.LH', + '11.5.21.RK.RH', '11.6.21.RK.FH', + '11.6.21.RK.LH', '11.6.21.RK.RH', + '11.7.21.RK.FH', '11.7.21.RK.LH', + '11.7.21.RK.RH', '11.8.21.RK.FH', + '11.8.21.RK.LH', '5.1.22.RK.FH', + '5.1.22.RK.LH', '5.1.22.RK.RH', + '5.10.22.RK.RH', '5.11.22.RK.FH', + '5.11.22.RK.LH', '5.11.22.RK.RH', + '5.12.22.RK.FH', '5.12.22.RK.LH', + '5.12.22.RK.RH', '5.13.22.RK.FH', + '5.13.22.RK.LH', '5.13.22.RK.RH', + '5.14.22.RK.FH', '5.14.22.RK.LH', + '5.14.22.RK.RH', '5.15.22.RK.FH', + '5.15.22.RK.LH', '5.15.22.RK.RH', + '5.16.22.RK.FH', '5.16.22.RK.LH', + '5.16.22.RK.RH', '5.17.22.RK.FH', + '5.17.22.RK.LH', '5.17.22.RK.RH', + '5.18.22.RK.FH', '5.18.22.RK.LH', + '5.18.22.RK.RH', '5.19.22.RK.FH', + '5.19.22.RK.LH', '5.19.22.RK.RH', + '5.2.22.RK.FH', '5.2.22.RK.LH', + '5.2.22.RK.RH', '5.20.22.RK.FH', + '5.20.22.RK.LH', '5.20.22.RK.RH', + '5.21.22.RK.FH', '5.21.22.RK.LH', + '5.21.22.RK.RH', '5.22.22.RK.FH', + '5.22.22.RK.LH', '5.22.22.RK.RH', + '5.23.22.RK.FH', '5.23.22.RK.LH', + '5.23.22.RK.RH', '5.24.22.RK.FH', + '5.24.22.RK.LH', '5.24.22.RK.RH', + '5.27.22.RK.FH', '5.27.22.RK.LH', + '5.27.22.RK.RH', '5.29.22.RK.FH', + '5.29.22.RK.LH', '5.29.22.RK.RH', + '5.3.22.RK.FH', '5.3.22.RK.LH', + '5.3.22.RK.RH', '5.30.22.RK.FH', + '5.30.22.RK.LH', '5.30.22.RK.RH', + '5.31.22.RK.FH', '5.31.22.RK.LH', + '5.31.22.RK.RH', '5.4.22.RK.FH', + '5.4.22.RK.LH', '5.4.22.RK.RH', + '5.5.22.RK.FH', '5.5.22.RK.LH', + '5.5.22.RK.RH', '5.6.22.RK.FH', + '5.6.22.RK.LH', '5.6.22.RK.RH', + '5.7.22.RK.FH', '5.7.22.RK.LH', + '5.7.22.RK.RH', '5.8.22.RK.FH', + '5.8.22.RK.LH', '5.8.22.RK.RH', + '5.9.22.RK.FH', '5.9.22.RK.LH', + '5.9.22.RK.RH', '6.1.22.RK.FH', + '6.1.22.RK.LH', '6.1.22.RK.RH', + '6.10.22.RK.FH', '6.10.22.RK.LH', + '6.10.22.RK.RH', '6.11.22.RK.FH', + '6.11.22.RK.LH', '6.11.22.RK.RH', + '6.12.22.RK.FH', '6.12.22.RK.LH', + '6.12.22.RK.RH', '6.13.22.RK.FH', + '6.13.22.RK.LH', '6.13.22.RK.RH', + '6.14.22.RK.FH', '6.14.22.RK.LH', + '6.14.22.RK.RH', '6.15.22.RK.FH', + '6.15.22.RK.LH', '6.15.22.RK.RH', + '6.16.22.RK.FH', '6.16.22.RK.LH', + '6.16.22.RK.RH', '6.17.22.RK.FH', + '6.17.22.RK.LH', '6.17.22.RK.RH', + '6.18.22.RK.FH', '6.18.22.RK.LH', + '6.18.22.RK.RH', '6.19.22.RK.FH', + '6.19.22.RK.LH', '6.19.22.RK.RH', + '6.2.22.RK.FH', '6.2.22.RK.LH', + '6.2.22.RK.RH', '6.20.22.RK.FH', + '6.20.22.RK.LH', '6.20.22.RK.RH', + '6.21.22.RK.FH', '6.21.22.RK.LH', + '6.21.22.RK.RH', '6.22.22.RK.FH', + '6.22.22.RK.LH', '6.22.22.RK.RH', + '6.23.22.RK.FH', '6.23.22.RK.LH.A', + '6.23.22.RK.LH.B', '6.24.22.RK.FH', + '6.24.22.RK.RH', '6.25.22.RK.FH', + '6.25.22.RK.LH', '6.25.22.RK.RH', + '6.26.22.RK.FH', '6.26.22.RK.LH', + '6.26.22.RK.RH.A', '6.26.22.RK.RH.B', + '6.27.22.RK.FH', '6.27.22.RK.LH', + '6.27.22.RK.RH', '6.28.22.RK.FH', + '6.28.22.RK.LH', '6.28.22.RK.RH', + '6.29.22.RK.FH', '6.29.22.RK.LH', + '6.29.22.RK.RH', '6.3.22.RK.FH', + '6.3.22.RK.LH', '6.3.22.RK.RH', + '6.30.22.RK.FH', '6.30.22.RK.LH', + '6.30.22.RK.RH', '6.4.22.RK.FH', + '6.4.22.RK.LH', '6.4.22.RK.RH', + '6.5.22.RK.FH', '6.5.22.RK.LH', + '6.5.22.RK.RH', '6.6.22.RK.FH', + '6.6.22.RK.LH', '6.6.22.RK.RH', + '6.7.22.RK.FH', '6.7.22.RK.LH', + '6.7.22.RK.RH', '6.8.22.RK.FH', + '6.8.22.RK.LH', '6.8.22.RK.RH', + '6.9.22.RK.FH', '6.9.22.RK.LH', + '6.9.22.RK.RH', '9.1.22.RK.FH', + '9.1.22.RK.LH', '9.1.22.RK.RH', + '9.10.22.RK.FH', '9.10.22.RK.LH', + '9.10.22.RK.RH', '9.11.22.RK.FH', + '9.11.22.RK.LH', '9.11.22.RK.RH', + '9.12.22.RK.FH', '9.12.22.RK.LH', + '9.12.22.RK.RH', '9.13.22.RK.FH', + '9.13.22.RK.LH', '9.13.22.RK.RH', + '9.14.22.RK.FH', '9.14.22.RK.LH', + '9.14.22.RK.RH', '9.15.22.RK.FH', + '9.15.22.RK.LH', '9.15.22.RK.RH', + '9.16.22.RK.FH', '9.16.22.RK.LH', + '9.16.22.RK.RH', '9.17.22.RK.FH', + '9.17.22.RK.LH', '9.17.22.RK.RH', + '9.19.22.RK.FH', '9.19.22.RK.LH', + '9.19.22.RK.RH', '9.2.22.RK.FH', + '9.2.22.RK.LH', '9.2.22.RK.RH', + '9.20.22.RK.FH', '9.20.22.RK.LH', + '9.20.22.RK.RH', '9.21.22.RK.FH', + '9.21.22.RK.LH', '9.21.22.RK.RH', + '9.22.22.RK.FH', '9.22.22.RK.LH', + '9.22.22.RK.RH', '9.23.22.RK.FH', + '9.23.22.RK.LH', '9.23.22.RK.RH', + '9.24.22.RK.FH', '9.24.22.RK.LH', + '9.24.22.RK.RH', '9.25.22.RK.FH', + '9.25.22.RK.LH', '9.26.22.RK.FH', + '9.26.22.RK.LH', '9.26.22.RK.RH', + '9.27.22.RK.FH', '9.27.22.RK.LH', + '9.27.22.RK.RH', '9.29.22.RK.FH', + '9.29.22.RK.LH', '9.29.22.RK.RH', + '9.3.22.RK.FH', '9.3.22.RK.LH', + '9.3.22.RK.RH', '9.30.22.RK.FH', + '9.30.22.RK.LH', '9.30.22.RK.RH', + '9.4.22.RK.FH', '9.4.22.RK.LH', + '9.4.22.RK.RH', '9.5.22.RK.FH', + '9.5.22.RK.LH', '9.5.22.RK.RH', + '9.6.22.RK.FH', '9.6.22.RK.LH', + '9.6.22.RK.RH', '9.7.22.RK.FH', + '9.7.22.RK.LH', '9.7.22.RK.RH', + '9.8.22.RK.FH', '9.8.22.RK.LH', + '9.8.22.RK.RH', '9.9.22.RK.FH', + '9.9.22.RK.LH', '9.9.22.RK.RH', + 'BLANK.242.4C', 'BLANK238.3A', + 'BLANK238.3B', 'BLANK238.3C', + 'BLANK238.3D', 'BLANK238.3E', + 'BLANK238.3F', 'BLANK238.3G', + 'BLANK238.3H', 'BLANK239.10A', + 'BLANK239.10B', 'BLANK239.10C', + 'BLANK239.10D', 'BLANK239.10E', + 'BLANK239.10F', 'BLANK239.10G', + 'BLANK239.10H', 'BLANK240.3A', + 'BLANK240.3B', 'BLANK240.3C', + 'BLANK240.3D', 'BLANK240.3E', + 'BLANK240.3F', 'BLANK240.3G', + 'BLANK240.3H', 'BLANK242.10A', + 'BLANK242.10B', 'BLANK242.10C', + 'BLANK242.10D', 'BLANK242.10E', + 'BLANK242.10F', 'BLANK242.10G', + 'BLANK242.10H', 'BLANK242.11A', + 'BLANK242.11B', 'BLANK242.11C', + 'BLANK242.11D', 'BLANK242.11E', + 'BLANK242.11F', 'BLANK242.11G', + 'BLANK242.11H', 'BLANK242.12A', + 'BLANK242.12B', 'BLANK242.12C', + 'BLANK242.12D', 'BLANK242.12E', + 'BLANK242.12F', 'BLANK242.12G', + 'BLANK242.12H', 'BLANK242.4D', + 'BLANK242.4E', 'BLANK242.4F', + 'BLANK242.4G', 'BLANK242.4H', + 'BLANK242.5A', 'BLANK242.5B', + 'BLANK242.5C', 'BLANK242.5D', + 'BLANK242.5E', 'BLANK242.5F', + 'BLANK242.5G', 'BLANK242.5H', + 'BLANK242.6A', 'BLANK242.6B', + 'BLANK242.6C', 'BLANK242.6D', + 'BLANK242.6E', 'BLANK242.6F', + 'BLANK242.6G', 'BLANK242.6H', + 'BLANK242.7A', 'BLANK242.7B', + 'BLANK242.7C', 'BLANK242.7D', + 'BLANK242.7E', 'BLANK242.7F', + 'BLANK242.7G', 'BLANK242.7H', + 'BLANK242.8A', 'BLANK242.8B', + 'BLANK242.8C', 'BLANK242.8D', + 'BLANK242.8E', 'BLANK242.8F', + 'BLANK242.8G', 'BLANK242.8H', + 'BLANK242.9A', 'BLANK242.9B', + 'BLANK242.9C', 'BLANK242.9D', + 'BLANK242.9E', 'BLANK242.9F', + 'BLANK242.9G', 'BLANK242.9H'] + # test sample-information-file generation. + pipeline = Pipeline(self.good_config_file, + self.good_run_id, + self.good_mapping_file_path, + self.output_file_path, + self.qiita_id, + Pipeline.AMPLICON_PTYPE) + + obs = pipeline.get_sample_ids() + self.assertEqual(sorted(obs), sorted(exp_sample_ids)) + + def test_get_sample_names(self): + exp = ['11.1.21.RK.FH', '11.1.21.RK.LH', '11.1.21.RK.RH', + '11.10.21.RK.FH', '11.10.21.RK.LH', '11.10.21.RK.RH', + '11.12.21.RK.FH', '11.12.21.RK.LH', '11.12.21.RK.RH', + '11.13.21.RK.FH', '11.13.21.RK.LH', '11.13.21.RK.RH', + '11.17.21.RK.FH', '11.17.21.RK.LH', '11.17.21.RK.RH', + '11.2.21.RK.FH', '11.2.21.RK.LH', '11.2.21.RK.RH', + '11.3.21.RK.FH', '11.3.21.RK.LH', '11.3.21.RK.RH', + '11.4.21.RK.FH', '11.4.21.RK.LH', '11.4.21.RK.RH', + '11.5.21.RK.FH', '11.5.21.RK.LH', '11.5.21.RK.RH', + '11.6.21.RK.FH', '11.6.21.RK.LH', '11.6.21.RK.RH', + '11.7.21.RK.FH', '11.7.21.RK.LH', '11.7.21.RK.RH', + '11.8.21.RK.FH', '11.8.21.RK.LH', '5.1.22.RK.FH', + '5.1.22.RK.LH', '5.1.22.RK.RH', '5.10.22.RK.RH', + '5.11.22.RK.FH', '5.11.22.RK.LH', '5.11.22.RK.RH', + '5.12.22.RK.FH', '5.12.22.RK.LH', '5.12.22.RK.RH', + '5.13.22.RK.FH', '5.13.22.RK.LH', '5.13.22.RK.RH', + '5.14.22.RK.FH', '5.14.22.RK.LH', '5.14.22.RK.RH', + '5.15.22.RK.FH', '5.15.22.RK.LH', '5.15.22.RK.RH', + '5.16.22.RK.FH', '5.16.22.RK.LH', '5.16.22.RK.RH', + '5.17.22.RK.FH', '5.17.22.RK.LH', '5.17.22.RK.RH', + '5.18.22.RK.FH', '5.18.22.RK.LH', '5.18.22.RK.RH', + '5.19.22.RK.FH', '5.19.22.RK.LH', '5.19.22.RK.RH', + '5.2.22.RK.FH', '5.2.22.RK.LH', '5.2.22.RK.RH', '5.20.22.RK.FH', + '5.20.22.RK.LH', '5.20.22.RK.RH', '5.21.22.RK.FH', + '5.21.22.RK.LH', '5.21.22.RK.RH', '5.22.22.RK.FH', + '5.22.22.RK.LH', '5.22.22.RK.RH', '5.23.22.RK.FH', + '5.23.22.RK.LH', '5.23.22.RK.RH', '5.24.22.RK.FH', + '5.24.22.RK.LH', '5.24.22.RK.RH', '5.27.22.RK.FH', + '5.27.22.RK.LH', '5.27.22.RK.RH', '5.29.22.RK.FH', + '5.29.22.RK.LH', '5.29.22.RK.RH', '5.3.22.RK.FH', + '5.3.22.RK.LH', '5.3.22.RK.RH', '5.30.22.RK.FH', + '5.30.22.RK.LH', '5.30.22.RK.RH', '5.31.22.RK.FH', + '5.31.22.RK.LH', '5.31.22.RK.RH', '5.4.22.RK.FH', + '5.4.22.RK.LH', '5.4.22.RK.RH', '5.5.22.RK.FH', '5.5.22.RK.LH', + '5.5.22.RK.RH', '5.6.22.RK.FH', '5.6.22.RK.LH', '5.6.22.RK.RH', + '5.7.22.RK.FH', '5.7.22.RK.LH', '5.7.22.RK.RH', '5.8.22.RK.FH', + '5.8.22.RK.LH', '5.8.22.RK.RH', '5.9.22.RK.FH', '5.9.22.RK.LH', + '5.9.22.RK.RH', '6.1.22.RK.FH', '6.1.22.RK.LH', '6.1.22.RK.RH', + '6.10.22.RK.FH', '6.10.22.RK.LH', '6.10.22.RK.RH', + '6.11.22.RK.FH', '6.11.22.RK.LH', '6.11.22.RK.RH', + '6.12.22.RK.FH', '6.12.22.RK.LH', '6.12.22.RK.RH', + '6.13.22.RK.FH', '6.13.22.RK.LH', '6.13.22.RK.RH', + '6.14.22.RK.FH', '6.14.22.RK.LH', '6.14.22.RK.RH', + '6.15.22.RK.FH', '6.15.22.RK.LH', '6.15.22.RK.RH', + '6.16.22.RK.FH', '6.16.22.RK.LH', '6.16.22.RK.RH', + '6.17.22.RK.FH', '6.17.22.RK.LH', '6.17.22.RK.RH', + '6.18.22.RK.FH', '6.18.22.RK.LH', '6.18.22.RK.RH', + '6.19.22.RK.FH', '6.19.22.RK.LH', '6.19.22.RK.RH', + '6.2.22.RK.FH', '6.2.22.RK.LH', '6.2.22.RK.RH', '6.20.22.RK.FH', + '6.20.22.RK.LH', '6.20.22.RK.RH', '6.21.22.RK.FH', + '6.21.22.RK.LH', '6.21.22.RK.RH', '6.22.22.RK.FH', + '6.22.22.RK.LH', '6.22.22.RK.RH', '6.23.22.RK.FH', + '6.23.22.RK.LH.A', '6.23.22.RK.LH.B', '6.24.22.RK.FH', + '6.24.22.RK.RH', '6.25.22.RK.FH', '6.25.22.RK.LH', + '6.25.22.RK.RH', '6.26.22.RK.FH', '6.26.22.RK.LH', + '6.26.22.RK.RH.A', '6.26.22.RK.RH.B', '6.27.22.RK.FH', + '6.27.22.RK.LH', '6.27.22.RK.RH', '6.28.22.RK.FH', + '6.28.22.RK.LH', '6.28.22.RK.RH', '6.29.22.RK.FH', + '6.29.22.RK.LH', '6.29.22.RK.RH', '6.3.22.RK.FH', + '6.3.22.RK.LH', '6.3.22.RK.RH', '6.30.22.RK.FH', + '6.30.22.RK.LH', '6.30.22.RK.RH', '6.4.22.RK.FH', + '6.4.22.RK.LH', '6.4.22.RK.RH', '6.5.22.RK.FH', '6.5.22.RK.LH', + '6.5.22.RK.RH', '6.6.22.RK.FH', '6.6.22.RK.LH', '6.6.22.RK.RH', + '6.7.22.RK.FH', '6.7.22.RK.LH', '6.7.22.RK.RH', '6.8.22.RK.FH', + '6.8.22.RK.LH', '6.8.22.RK.RH', '6.9.22.RK.FH', '6.9.22.RK.LH', + '6.9.22.RK.RH', '9.1.22.RK.FH', '9.1.22.RK.LH', '9.1.22.RK.RH', + '9.10.22.RK.FH', '9.10.22.RK.LH', '9.10.22.RK.RH', + '9.11.22.RK.FH', '9.11.22.RK.LH', '9.11.22.RK.RH', + '9.12.22.RK.FH', '9.12.22.RK.LH', '9.12.22.RK.RH', + '9.13.22.RK.FH', '9.13.22.RK.LH', '9.13.22.RK.RH', + '9.14.22.RK.FH', '9.14.22.RK.LH', '9.14.22.RK.RH', + '9.15.22.RK.FH', '9.15.22.RK.LH', '9.15.22.RK.RH', + '9.16.22.RK.FH', '9.16.22.RK.LH', '9.16.22.RK.RH', + '9.17.22.RK.FH', '9.17.22.RK.LH', '9.17.22.RK.RH', + '9.19.22.RK.FH', '9.19.22.RK.LH', '9.19.22.RK.RH', + '9.2.22.RK.FH', '9.2.22.RK.LH', '9.2.22.RK.RH', '9.20.22.RK.FH', + '9.20.22.RK.LH', '9.20.22.RK.RH', '9.21.22.RK.FH', + '9.21.22.RK.LH', '9.21.22.RK.RH', '9.22.22.RK.FH', + '9.22.22.RK.LH', '9.22.22.RK.RH', '9.23.22.RK.FH', + '9.23.22.RK.LH', '9.23.22.RK.RH', '9.24.22.RK.FH', + '9.24.22.RK.LH', '9.24.22.RK.RH', '9.25.22.RK.FH', + '9.25.22.RK.LH', '9.26.22.RK.FH', '9.26.22.RK.LH', + '9.26.22.RK.RH', '9.27.22.RK.FH', '9.27.22.RK.LH', + '9.27.22.RK.RH', '9.29.22.RK.FH', '9.29.22.RK.LH', + '9.29.22.RK.RH', '9.3.22.RK.FH', '9.3.22.RK.LH', '9.3.22.RK.RH', + '9.30.22.RK.FH', '9.30.22.RK.LH', '9.30.22.RK.RH', + '9.4.22.RK.FH', '9.4.22.RK.LH', '9.4.22.RK.RH', '9.5.22.RK.FH', + '9.5.22.RK.LH', '9.5.22.RK.RH', '9.6.22.RK.FH', '9.6.22.RK.LH', + '9.6.22.RK.RH', '9.7.22.RK.FH', '9.7.22.RK.LH', '9.7.22.RK.RH', + '9.8.22.RK.FH', '9.8.22.RK.LH', '9.8.22.RK.RH', '9.9.22.RK.FH', + '9.9.22.RK.LH', '9.9.22.RK.RH', 'BLANK.242.4C', 'BLANK238.3A', + 'BLANK238.3B', 'BLANK238.3C', 'BLANK238.3D', 'BLANK238.3E', + 'BLANK238.3F', 'BLANK238.3G', 'BLANK238.3H', 'BLANK239.10A', + 'BLANK239.10B', 'BLANK239.10C', 'BLANK239.10D', 'BLANK239.10E', + 'BLANK239.10F', 'BLANK239.10G', 'BLANK239.10H', 'BLANK240.3A', + 'BLANK240.3B', 'BLANK240.3C', 'BLANK240.3D', 'BLANK240.3E', + 'BLANK240.3F', 'BLANK240.3G', 'BLANK240.3H', 'BLANK242.10A', + 'BLANK242.10B', 'BLANK242.10C', 'BLANK242.10D', 'BLANK242.10E', + 'BLANK242.10F', 'BLANK242.10G', 'BLANK242.10H', 'BLANK242.11A', + 'BLANK242.11B', 'BLANK242.11C', 'BLANK242.11D', 'BLANK242.11E', + 'BLANK242.11F', 'BLANK242.11G', 'BLANK242.11H', 'BLANK242.12A', + 'BLANK242.12B', 'BLANK242.12C', 'BLANK242.12D', 'BLANK242.12E', + 'BLANK242.12F', 'BLANK242.12G', 'BLANK242.12H', 'BLANK242.4D', + 'BLANK242.4E', 'BLANK242.4F', 'BLANK242.4G', 'BLANK242.4H', + 'BLANK242.5A', 'BLANK242.5B', 'BLANK242.5C', 'BLANK242.5D', + 'BLANK242.5E', 'BLANK242.5F', 'BLANK242.5G', 'BLANK242.5H', + 'BLANK242.6A', 'BLANK242.6B', 'BLANK242.6C', 'BLANK242.6D', + 'BLANK242.6E', 'BLANK242.6F', 'BLANK242.6G', 'BLANK242.6H', + 'BLANK242.7A', 'BLANK242.7B', 'BLANK242.7C', 'BLANK242.7D', + 'BLANK242.7E', 'BLANK242.7F', 'BLANK242.7G', 'BLANK242.7H', + 'BLANK242.8A', 'BLANK242.8B', 'BLANK242.8C', 'BLANK242.8D', + 'BLANK242.8E', 'BLANK242.8F', 'BLANK242.8G', 'BLANK242.8H', + 'BLANK242.9A', 'BLANK242.9B', 'BLANK242.9C', 'BLANK242.9D', + 'BLANK242.9E', 'BLANK242.9F', 'BLANK242.9G', 'BLANK242.9H'] + + # test sample-information-file generation. + pipeline = Pipeline(self.good_config_file, + self.good_run_id, + self.good_mapping_file_path, + self.output_file_path, + self.qiita_id, + Pipeline.AMPLICON_PTYPE) + + obs = pipeline.get_sample_names() + self.assertEqual(sorted(obs), sorted(exp)) + + # mapping file only contains one project, but this test will + # still exercise the correct code. + obs = pipeline.get_sample_names('ABTX_20230208_ABTX_11052') + self.assertEqual(sorted(obs), sorted(exp)) + + def test_get_project_info(self): + exp_proj_info = [ + {'project_name': 'ABTX_20230208_ABTX_11052', + 'qiita_id': '11052', + 'contains_replicates': False}] + + exp_project_names = ['ABTX_20230208_ABTX_11052'] + + # test sample-information-file generation. + pipeline = Pipeline(self.good_config_file, self.good_run_id, + self.good_mapping_file_path, + self.output_file_path, self.qiita_id, + Pipeline.AMPLICON_PTYPE) + + obs_proj_info = pipeline.get_project_info() + obs_project_names = [] + for d in obs_proj_info: + obs_project_names.append(d['project_name']) + + self.assertEqual(sorted(obs_project_names), sorted(exp_project_names)) + + for exp_d in exp_proj_info: + for obs_d in obs_proj_info: + if obs_d['project_name'] == exp_d['project_name']: + self.assertDictEqual(obs_d, exp_d) + break + + def test_dummy_sheet_generation(self): + # generate a RunInfo.xml file w/only one indexed read. + self.create_runinfo_file(four_reads=False) + + _ = Pipeline(self.good_config_file, + self.good_run_id, + self.good_mapping_file_path, + self.output_file_path, + self.qiita_id, + Pipeline.AMPLICON_PTYPE) + + dummy_sheet_path = join(self.output_file_path, + 'dummy_sample_sheet.csv') + + with open(dummy_sheet_path) as f: + obs = f.readlines() + obs = [x.strip() for x in obs] + self.assertEqual(obs, good_dummy_sheet1) + + # generate a RunInfo.xml file w/two indexed reads. + self.create_runinfo_file(four_reads=True) + + _ = Pipeline(self.good_config_file, + self.good_run_id, + self.good_mapping_file_path, + self.output_file_path, + self.qiita_id, + Pipeline.AMPLICON_PTYPE) + + dummy_sheet_path = join(self.output_file_path, + 'dummy_sample_sheet.csv') + + with open(dummy_sheet_path) as f: + obs = f.readlines() + obs = [x.strip() for x in obs] + self.assertEqual(obs, good_dummy_sheet2) + + # refrain from testing dummy_sheet_generation with bad inputs. + # include those tests when testing process_run_info_file(). + + def test_process_run_info_file(self): + pipeline = Pipeline(self.good_config_file, + self.good_run_id, + self.good_mapping_file_path, + self.output_file_path, + self.qiita_id, + Pipeline.AMPLICON_PTYPE) + + obs = pipeline.process_run_info_file('tests/data/RunInfo_Good1.xml') + + exp = [{'NumCycles': 151, 'Number': 1, 'IsIndexedRead': False}, + {'NumCycles': 8, 'Number': 2, 'IsIndexedRead': True}, + {'NumCycles': 8, 'Number': 3, 'IsIndexedRead': True}, + {'NumCycles': 151, 'Number': 4, 'IsIndexedRead': False}] + + self.assertEqual(obs, exp) + + obs = pipeline.process_run_info_file('tests/data/RunInfo_Good2.xml') + + exp = [{'NumCycles': 151, 'Number': 1, 'IsIndexedRead': False}, + {'NumCycles': 8, 'Number': 2, 'IsIndexedRead': True}, + {'NumCycles': 151, 'Number': 3, 'IsIndexedRead': False}] + + self.assertEqual(obs, exp) + + # a ValueError should be raised when a file that is obviously not + # a RunInfo.XML file is passed to the method. + with self.assertRaisesRegex(ValueError, "Cannot extract read " + "information"): + pipeline.process_run_info_file('tests/data/good-sample-sheet.csv') + + # other errors like an improper list of results from + # process_run_info_file() are handled by generate_dummy_sample_sheet(). + # These are indirectly tested as generate_dummy_sample_sheet() is + # called by Pipeline's constructor. + + def test_identify_reserved_words(self): + pipeline = Pipeline(self.good_config_file, + self.good_run_id, + self.good_mapping_file_path, + self.output_file_path, + self.qiita_id, + Pipeline.AMPLICON_PTYPE) + + # assert that arbitrary strings are not reserved. + obs = pipeline.identify_reserved_words(['NOT_A_RESERVED_WORD', + 'ANOTHER_WORD']) + self.assertEqual(obs, []) + + # assert that Sample_Well is okay for current pre-prep files but + # well_id_384 is reserved. Show that all forms of tm300_8_tool are + # also reserved. + obs = pipeline.identify_reserved_words(['Sample_Well', + 'TM300_8_Tool', + 'tm300_8_tool', + 'well_id_384']) + self.assertEqual(set(obs), {'tm300_8_tool', 'well_id_384'}) + + +class TestInstrumentUtils(unittest.TestCase): + def setUp(self): + package_root = abspath('./') + self.path = partial(join, package_root, 'tests', 'data') + + def test_instrument_utils(self): + iutils = InstrumentUtils() + + exp = {'231108_M04586_0992_000000000-L7342': {'id': 'M04586', + 'type': 'MiSeq', + 'date': '2023-11-08'}, + '200320_K00180_0957_AHCYKKBBXY_PE150_Knight': {'id': 'K00180', + 'type': ('HiSeq ' + '4000'), + 'date': ('2020-0' + '3-20') + }, + '20220912_FS10001773_27_BSE39218-1017': {'id': 'FS10001773', + 'type': 'iSeq', + 'date': '2022-09-12'}, + '231215_LH00444_0031_B222WHFLT4': {'id': 'LH00444', + 'type': 'NovaSeq X Plus', + 'date': '2023-12-16'}, + '190809_D00611_0709_AH3CKJBCX3_RKL0040_Feist_36-39_2': { + 'id': 'D00611', + 'type': 'HiSeq 2500', + 'date': '2019-08-09'}, + '231215_A01535_0435_BH23F5DSXC': {'id': 'A01535', + 'type': 'NovaSeq 6000', + 'date': '2023-12-15'}, + '150629_SN1001_0511_AH5L7GBCXX': {'id': 'SN1001', + 'type': 'RapidRun', + 'date': '2015-06-29'}} + + run_directories = [] + for root, dirs, files in walk(self.path('sample_run_directories')): + for run_id in dirs: + run_directories.append((run_id, join(root, run_id))) + + # don't walk recursively. stop after first level. + break + + for run_id, run_dir in run_directories: + self.assertEqual(iutils.get_instrument_id(run_dir), + exp[run_id]['id']) + self.assertEqual(iutils.get_instrument_type(run_dir), + exp[run_id]['type']) + self.assertEqual(iutils.get_date(run_dir), + exp[run_id]['date']) + + +good_dummy_sheet1 = [ + "[Header],,,,,,", "IEMFileVersion,4,,,,,", "Date,10/27/22,,,,,", + "Workflow,GenerateFASTQ,,,,,", "Application,FASTQ Only,,,,,", + "Assay,TruSeq HT,,,,,", "Description,test_run,,,,,", + "Chemistry,Amplicon,,,,,", ",,,,,,", "[Reads],,,,,,", "151,,,,,,", + "151,,,,,,", ",,,,,,", "[Settings],,,,,,", + "OverrideCycles,Y151;N8;N8;Y151,,,,,", "MaskShortReads,1,,,,,", + "CreateFastqForIndexReads,1,,,,,", ",,,,,,", "[Data],,,,,,", + "Sample_ID,Sample_Plate,Sample_Well,I7_Index_ID,index,I5_Index_ID,index2", + "211021_A00000_0000_SAMPLE_SMPL1,,,,,,", ",,,,,,", + "[Bioinformatics],,,,,,", + ("Project,ForwardAdapter,ReverseAdapter,PolyGTrimming,HumanFiltering," + "QiitaID,"), + "211021_A00000_0000_SAMPLE_SMPL1,NA,NA,FALSE,FALSE,14782,", ",,,,,,", + "[Contact],,,,,,", "Email,Sample_Project,,,,,", + "c2cowart@ucsd.edu,SomeProject,,,,,", + "antgonza@gmail.com,AnotherProject,,,,,", ",,,,,,"] + + +good_dummy_sheet2 = [ + "[Header],,,,,,", "IEMFileVersion,4,,,,,", "Date,10/27/22,,,,,", + "Workflow,GenerateFASTQ,,,,,", "Application,FASTQ Only,,,,,", + "Assay,TruSeq HT,,,,,", "Description,test_run,,,,,", + "Chemistry,Amplicon,,,,,", ",,,,,,", "[Reads],,,,,,", "151,,,,,,", + "151,,,,,,", ",,,,,,", "[Settings],,,,,,", + "OverrideCycles,Y151;N8;Y151,,,,,", "MaskShortReads,1,,,,,", + "CreateFastqForIndexReads,1,,,,,", ",,,,,,", "[Data],,,,,,", + "Sample_ID,Sample_Plate,Sample_Well,I7_Index_ID,index,I5_Index_ID,index2", + "211021_A00000_0000_SAMPLE_SMPL1,,,,,,", ",,,,,,", + "[Bioinformatics],,,,,,", + ("Project,ForwardAdapter,ReverseAdapter,PolyGTrimming,HumanFiltering," + "QiitaID,"), + "211021_A00000_0000_SAMPLE_SMPL1,NA,NA,FALSE,FALSE,14782,", ",,,,,,", + "[Contact],,,,,,", "Email,Sample_Project,,,,,", + "c2cowart@ucsd.edu,SomeProject,,,,,", + "antgonza@gmail.com,AnotherProject,,,,,", ",,,,,,"] + + +if __name__ == '__main__': + unittest.main() diff --git a/tests/test_PipelineError.py b/tests/test_PipelineError.py new file mode 100644 index 00000000..617a69ad --- /dev/null +++ b/tests/test_PipelineError.py @@ -0,0 +1,10 @@ +import unittest + + +class TestPipelineError(unittest.TestCase): + def test_something(self): + pass + + +if __name__ == '__main__': + unittest.main() diff --git a/tests/test_SeqCountsJob.py b/tests/test_SeqCountsJob.py new file mode 100644 index 00000000..d550fcd6 --- /dev/null +++ b/tests/test_SeqCountsJob.py @@ -0,0 +1,81 @@ +from os.path import join +from sequence_processing_pipeline.SeqCountsJob import SeqCountsJob +from functools import partial +import unittest +import pandas as pd +from pandas.testing import assert_frame_equal + + +class TestSeqCountsJob(unittest.TestCase): + def setUp(self): + package_root = "" + self.path = partial(join, package_root, "tests") + # where 2caa8226-cf69-45a3-bd40-1e90ec3d18d0 is a random qiita job id. + self.exp = self.path('data', 'tellseq_output', 'integrate_test.sbatch') + + # where 150629_SN1001_0511_AH5L7GBCXX is a run-directory that already + # exists. + self.run_dir = self.path('data', 'sample_run_directories', + '150629_SN1001_0511_AH5L7GBCXX') + + self.output_path = self.path('2caa8226-cf69-45a3-bd40-1e90ec3d18d0') + + self.files_to_count_path = self.path("data", "files_to_count.txt") + + self.queue_name = "qiita" + self.node_count = "1" + self.wall_time_limit = "1440" + self.jmem = "8" + self.modules_to_load = [] + self.qiita_job_id = "2caa8226-cf69-45a3-bd40-1e90ec3d18d0" + self.cores_per_task = "1" + self.raw_fastq_dir = join(self.output_path, "TellReadJob", "Full") + self.max_array_length = 100 + self.exp_sbatch_output = self.path("data", "seq_counts.sbatch") + self.exp_results = self.path("data", "SeqCounts.csv") + self.dummy_sample_sheet = self.path("data", + "tellseq_metag_dummy_sample" + "_sheet.csv") + + def test_creation(self): + def compare_files(obs, exp): + with open(obs, 'r') as f: + obs_lines = f.readlines() + obs_lines = [x.strip() for x in obs_lines] + obs_lines = [x for x in obs_lines if x != ''] + + with open(exp, 'r') as f: + exp_lines = f.readlines() + exp_lines = [x.strip() for x in exp_lines] + exp_lines = [x for x in exp_lines if x != ''] + + for obs_line, exp_line in zip(obs_lines, exp_lines): + self.assertEqual(obs_line, exp_line) + + # test basic good-path + job = SeqCountsJob(self.run_dir, self.output_path, self.queue_name, + self.node_count, self.wall_time_limit, self.jmem, + self.modules_to_load, self.qiita_job_id, + self.max_array_length, self.files_to_count_path, + self.cores_per_task) + + obs = job._generate_job_script() + + compare_files(obs, self.exp_sbatch_output) + + # hack log path so that it points to test data directory rather than + # the output directory for a run we didn't run(). + job.log_path = self.path("data", "seq_counts_logs") + + obs = pd.read_csv(job._aggregate_counts(self.dummy_sample_sheet), + sep=',', dtype='str') + exp = pd.read_csv(self.exp_results, sep=',', dtype='str') + + # assert_frame_equal will raise an AssertionError if the dfs are not + # equal. The AssertionError message itself will be the have the + # best description of the error so return it to the user. + assert_frame_equal(obs, exp, check_like=True) + + +if __name__ == '__main__': + unittest.main() diff --git a/tests/test_TRIntegrateJob.py b/tests/test_TRIntegrateJob.py new file mode 100644 index 00000000..06f3817f --- /dev/null +++ b/tests/test_TRIntegrateJob.py @@ -0,0 +1,73 @@ +from os.path import join +from sequence_processing_pipeline.TRIntegrateJob import TRIntegrateJob +from functools import partial +import unittest + + +class TestTRIntegrateJob(unittest.TestCase): + def setUp(self): + package_root = "" + self.path = partial(join, package_root, "tests") + # where 2caa8226-cf69-45a3-bd40-1e90ec3d18d0 is a random qiita job id. + self.obs = self.path('2caa8226-cf69-45a3-bd40-1e90ec3d18d0', + 'TRIntegrateJob', 'integrate_test.sbatch') + self.exp = self.path('data', 'tellseq_output', 'integrate_test.sbatch') + + # where 150629_SN1001_0511_AH5L7GBCXX is a run-directory that already + # exists. + self.run_dir = self.path('data', 'sample_run_directories', + '150629_SN1001_0511_AH5L7GBCXX') + + self.output_path = self.path('2caa8226-cf69-45a3-bd40-1e90ec3d18d0') + + self.sample_sheet_path = self.path('data', + 'tellseq_metag_dummy_sample_' + 'sheet.csv') + + self.queue_name = "qiita" + self.node_count = "1" + self.wall_time_limit = "96:00:00" + self.jmem = "16" + self.modules_to_load = ["singularity_3.6.4"] + self.qiita_job_id = "2caa8226-cf69-45a3-bd40-1e90ec3d18d0" + self.label = "150629_SN1001_0511_AH5L7GBCXX-test" + self.reference_base = "" + self.reference_map = "" + self.tmp1_path = join(self.output_path, "TRIntegrateJob", "output", + "tmp1") + # reflects location of script on host. + self.sing_script_path = ("$HOME/qiita-spots/tellread-release-novaseqX/" + "run_tellread_sing.sh") + self.lane = "1" + self.cores_per_task = "4" + self.integrate_script_path = join(package_root, "src", + "sequence_processing_pipeline", + "contrib", + "integrate-indices-np.py") + self.sil_path = self.path('data', 'fake_sample_index_list.txt') + self.raw_fastq_dir = join(self.output_path, "TellReadJob", "Full") + + def test_creation(self): + # test basic good-path + job = TRIntegrateJob(self.run_dir, self.output_path, + self.sample_sheet_path, self.queue_name, + self.node_count, self.wall_time_limit, + self.jmem, self.modules_to_load, + self.qiita_job_id, self.integrate_script_path, + self.sil_path, self.raw_fastq_dir, + self.reference_base, self.reference_map, + self.cores_per_task) + + job._generate_job_script() + + with open(self.obs, 'r') as f: + obs_lines = f.readlines() + + with open(self.exp, 'r') as f: + exp_lines = f.readlines() + + self.assertEqual(obs_lines, exp_lines) + + +if __name__ == '__main__': + unittest.main() diff --git a/tests/test_TellReadJob.py b/tests/test_TellReadJob.py new file mode 100644 index 00000000..b9c95e9d --- /dev/null +++ b/tests/test_TellReadJob.py @@ -0,0 +1,66 @@ +from os.path import join +from sequence_processing_pipeline.TellReadJob import TellReadJob +from functools import partial +import unittest + + +class TestTellReadJob(unittest.TestCase): + def setUp(self): + package_root = "" + self.path = partial(join, package_root, "tests") + # where 2caa8226-cf69-45a3-bd40-1e90ec3d18d0 is a random qiita job id. + self.obs = self.path('2caa8226-cf69-45a3-bd40-1e90ec3d18d0', + 'TellReadJob', 'tellread_test.sbatch') + self.exp = self.path('data', 'tellseq_output', 'tellread_test.sbatch') + + # where 150629_SN1001_0511_AH5L7GBCXX is a run-directory that already + # exists. + self.run_dir = self.path('data', 'sample_run_directories', + '150629_SN1001_0511_AH5L7GBCXX') + + self.output_path = self.path('2caa8226-cf69-45a3-bd40-1e90ec3d18d0') + + self.sample_sheet_path = self.path('data', + 'tellseq_metag_dummy_sample_' + 'sheet.csv') + + self.queue_name = "qiita" + self.node_count = "1" + self.wall_time_limit = "96:00:00" + self.jmem = "16" + self.modules_to_load = ["singularity_3.6.4"] + self.qiita_job_id = "2caa8226-cf69-45a3-bd40-1e90ec3d18d0" + self.label = "150629_SN1001_0511_AH5L7GBCXX-test" + self.reference_base = "" + self.reference_map = "" + self.tmp1_path = join(self.output_path, "TellReadJob", "output", + "tmp1") + # reflects location of script on host. + self.sing_script_path = ("$HOME/qiita-spots/tellread-release-novaseqX/" + "run_tellread_sing.sh") + self.lane = "1" + self.cores_per_task = "4" + + def test_creation(self): + # test basic good-path + job = TellReadJob(self.run_dir, self.output_path, + self.sample_sheet_path, self.queue_name, + self.node_count, self.wall_time_limit, + self.jmem, self.modules_to_load, self.qiita_job_id, + self.reference_base, self.reference_map, + self.sing_script_path, self.cores_per_task) + + job._generate_job_script() + + with open(self.obs, 'r') as f: + obs_lines = f.readlines() + + with open(self.exp, 'r') as f: + exp_lines = f.readlines() + + for obs_line, exp_line in zip(obs_lines, exp_lines): + self.assertEqual(obs_line, exp_line) + + +if __name__ == '__main__': + unittest.main() diff --git a/qp_klp/tests/test_WorkflowFactory.py b/tests/test_WorkflowFactory.py similarity index 83% rename from qp_klp/tests/test_WorkflowFactory.py rename to tests/test_WorkflowFactory.py index db862562..c14971b6 100644 --- a/qp_klp/tests/test_WorkflowFactory.py +++ b/tests/test_WorkflowFactory.py @@ -46,7 +46,7 @@ def test_workflow_performs_parameter_checking(self): # confirm that once factory is given enough information to select a # Workflow() class, the class itself confirms that it has all the # parameters it needs. - kwargs = {"uif_path": "qp_klp/tests/data/sample-sheets/metagenomic/" + kwargs = {"uif_path": "tests/data/sample-sheets/metagenomic/" "illumina/good_sheet1.csv"} msg = ("The following values must also be defined in kwargs for " @@ -57,7 +57,7 @@ def test_workflow_performs_parameter_checking(self): with self.assertRaisesRegex(ValueError, msg): WorkflowFactory.generate_workflow(**kwargs) - kwargs = {"uif_path": "qp_klp/tests/data/pre-preps/good_pre_prep1.txt"} + kwargs = {"uif_path": "tests/data/pre-preps/good_pre_prep1.txt"} msg = ("The following values must also be defined in kwargs for " "StandardAmpliconWorkflow workflows: qclient, config_fp, " @@ -70,10 +70,10 @@ def test_invalid_sample_sheets(self): # confirm an otherwise good-sample-sheet w/a bad SheetType is going # fail because it doesn't pass validation. SheetType directly # determines the Instrument Mixin to be used. - kwargs = {"uif_path": "qp_klp/tests/data/sample-sheets/metagenomic/" + kwargs = {"uif_path": "tests/data/sample-sheets/metagenomic/" "illumina/bad_sheet1.csv"} - msg = ("'qp_klp/tests/data/sample-sheets/metagenomic/illumina/" + msg = ("'tests/data/sample-sheets/metagenomic/illumina/" "bad_sheet1.csv' does not appear to be a valid sample-sheet.") with self.assertRaisesRegex(ValueError, msg): @@ -81,10 +81,10 @@ def test_invalid_sample_sheets(self): # confirm an otherwise good-sample-sheet w/a bad Assay value is going # to fail because it doesn't pass validation. - kwargs = {"uif_path": "qp_klp/tests/data/sample-sheets/metagenomic/" + kwargs = {"uif_path": "tests/data/sample-sheets/metagenomic/" "illumina/bad_sheet2.csv"} - msg = ("'qp_klp/tests/data/sample-sheets/metagenomic/illumina/" + msg = ("'tests/data/sample-sheets/metagenomic/illumina/" "bad_sheet2.csv' does not appear to be a valid sample-sheet.") with self.assertRaisesRegex(ValueError, msg): @@ -92,7 +92,7 @@ def test_invalid_sample_sheets(self): # confirm a file that is obviously not a mapping-file or sample-sheet # file will not follow through. - kwargs = {"uif_path": "qp_klp/tests/data/Demultiplex_Stats.csv"} + kwargs = {"uif_path": "tests/data/Demultiplex_Stats.csv"} msg = ("Your uploaded file doesn't appear to be a sample-sheet or a " "mapping-file.") @@ -100,13 +100,13 @@ def test_invalid_sample_sheets(self): WorkflowFactory.generate_workflow(**kwargs) def test_metagenomic_workflow_creation(self): - kwargs = {"uif_path": "qp_klp/tests/data/sample-sheets/metagenomic/" + kwargs = {"uif_path": "tests/data/sample-sheets/metagenomic/" "illumina/good_sheet1.csv", "qclient": self.qclient, "lane_number": "1", - "config_fp": "qp_klp/tests/data/configuration.json", + "config_fp": "tests/configuration.json", "run_identifier": "211021_A00000_0000_SAMPLE", - "output_dir": "qp_klp/tests/test_output", + "output_dir": "tests/test_output", "job_id": "78901", "is_restart": False } @@ -124,13 +124,13 @@ def test_metagenomic_workflow_creation(self): wf.execute_pipeline() def test_metatranscriptomic_workflow_creation(self): - kwargs = {"uif_path": "qp_klp/tests/data/sample-sheets/" + kwargs = {"uif_path": "tests/data/sample-sheets/" "metatranscriptomic/illumina/good_sheet1.csv", "qclient": self.qclient, "lane_number": "1", - "config_fp": "qp_klp/tests/data/configuration.json", + "config_fp": "tests/configuration.json", "run_identifier": "211021_A00000_0000_SAMPLE", - "output_dir": "qp_klp/tests/test_output", + "output_dir": "tests/test_output", "job_id": "78901", "is_restart": False } @@ -148,11 +148,11 @@ def test_metatranscriptomic_workflow_creation(self): wf.execute_pipeline() def test_amplicon_workflow_creation(self): - kwargs = {"uif_path": "qp_klp/tests/data/pre-preps/good_pre_prep1.txt", + kwargs = {"uif_path": "tests/data/pre-preps/good_pre_prep1.txt", "qclient": self.qclient, - "config_fp": "qp_klp/tests/data/configuration.json", + "config_fp": "tests/configuration.json", "run_identifier": "211021_A00000_0000_SAMPLE", - "output_dir": "qp_klp/tests/test_output", + "output_dir": "tests/test_output", "job_id": "78901", "is_restart": False } @@ -170,12 +170,12 @@ def test_amplicon_workflow_creation(self): wf.execute_pipeline() def test_tellseq_workflow_creation(self): - kwargs = {"uif_path": "qp_klp/tests/data/sample-sheets/metagenomic/" + kwargs = {"uif_path": "tests/data/sample-sheets/metagenomic/" "tellseq/good_sheet1.csv", "qclient": self.qclient, - "config_fp": "qp_klp/tests/data/configuration.json", + "config_fp": "tests/configuration.json", "run_identifier": "211021_A00000_0000_SAMPLE", - "output_dir": "qp_klp/tests/test_output", + "output_dir": "tests/test_output", "job_id": "78901", "lane_number": "1", "is_restart": False diff --git a/tests/test_commands.py b/tests/test_commands.py new file mode 100644 index 00000000..cb4d2f5e --- /dev/null +++ b/tests/test_commands.py @@ -0,0 +1,180 @@ +import unittest +from unittest.mock import patch +from tempfile import TemporaryDirectory +import gzip +import os +from sequence_processing_pipeline.Commands import (split_similar_size_bins, + demux) +import io +from os.path import join + + +class CommandTests(unittest.TestCase): + @patch('os.stat') + @patch('glob.glob') + def test_split_similar_size_bins(self, glob, stat): + class MockStat: + st_size = 2 ** 28 # 256MB + + mockglob = ['/foo/bar/a_R1_001.fastq.gz', + '/foo/bar/b_R2_001.fastq.gz', + '/foo/bar/a_R2_001.fastq.gz', + '/foo/baz/c_R2_001.fastq.gz', + '/foo/baz/c_R1_001.fastq.gz', + '/foo/bar/b_R1_001.fastq.gz'] + + with TemporaryDirectory() as tmp: + exp = (2, 1073741824) + stat.return_value = MockStat() # 512MB + glob.return_value = mockglob + obs = split_similar_size_bins('foo', 1, tmp + '/prefix') + self.assertEqual(obs, exp) + + exp_1 = ('/foo/bar/a_R1_001.fastq.gz\t/foo/bar/a_R2_001.fastq.gz' + '\tbar\n' + '/foo/bar/b_R1_001.fastq.gz\t/foo/bar/b_R2_001.fastq.gz' + '\tbar\n') + exp_2 = ('/foo/baz/c_R1_001.fastq.gz\t/foo/baz/c_R2_001.fastq.gz' + '\tbaz\n') + + obs_1 = open(tmp + '/prefix-1').read() + self.assertEqual(obs_1, exp_1) + obs_1 = open(tmp + '/prefix-2').read() + self.assertEqual(obs_1, exp_2) + + @patch('os.stat') + @patch('glob.glob') + def test_split_similar_size_bins_odd_sample_names(self, glob, stat): + """ + # to prevent issues w/filenames like the ones below from being mistaken + # for R1 or R2 files, use determine_orientation(). + """ + class MockStat: + st_size = 2 ** 28 # 256MB + + mockglob = ['/foo/bar/Sample1_R1_001.fastq.gz', + '/foo/bar/Sample2_R2_001.fastq.gz', + '/foo/bar/Sample1_R2_001.fastq.gz', + '/foo/baz/Sample3_R2_SRE_S2_L007_R1_001.fastq.gz', + '/foo/baz/Sample3_R1_SRE_S2_L007_R2_001.fastq.gz', + '/foo/bar/Sample2_R1_001.fastq.gz'] + + with TemporaryDirectory() as tmp: + exp = (2, 1073741824) + stat.return_value = MockStat() # 512MB + glob.return_value = mockglob + obs = split_similar_size_bins('foo', 1, tmp + '/prefix') + self.assertEqual(obs, exp) + + exp_1 = ('/foo/bar/Sample1_R1_001.fastq.gz\t' + '/foo/bar/Sample1_R2_001.fastq.gz\t' + 'bar\n' + '/foo/bar/Sample2_R1_001.fastq.gz\t' + '/foo/bar/Sample2_R2_001.fastq.gz\t' + 'bar\n') + exp_2 = ('/foo/baz/Sample3_R1_SRE_S2_L007_R2_001.fastq.gz\t' + '/foo/baz/Sample3_R2_SRE_S2_L007_R1_001.fastq.gz\t' + 'baz\n') + + obs_1 = open(tmp + '/prefix-1').read() + self.assertEqual(obs_1, exp_1) + obs_1 = open(tmp + '/prefix-2').read() + self.assertEqual(obs_1, exp_2) + + def test_demux(self): + with TemporaryDirectory() as tmp: + id_map = [ + ["1", "a_R1", "a_R2", "Project_12345"], + ["2", "b_R1", "b_R2", "Project_12345"] + ] + + infile_data = '\n'.join(['@1::MUX::foo/1', 'ATGC', '+', '!!!!', + '@1::MUX::foo/2', 'ATGC', '+', '!!!!', + '@1::MUX::bar/1', 'ATGC', '+', '!!!!', + '@1::MUX::bar/2', 'ATGC', '+', '!!!!', + '@2::MUX::baz/1', 'ATGC', '+', '!!!!', + '@2::MUX::baz/2', 'ATGC', '+', '!!!!', + '@2::MUX::bing/1', 'ATGC', '+', '!!!!', + '@2::MUX::bing/2', 'ATGC', '+', '!!!!', + '']) + infile = io.StringIO(infile_data) + + exp_data_r1 = ['@baz/1', 'ATGC', '+', '!!!!', + '@bing/1', 'ATGC', '+', '!!!!'] + exp_data_r2 = ['@baz/2', 'ATGC', '+', '!!!!', + '@bing/2', 'ATGC', '+', '!!!!'] + + task = 1 + maxtask = 2 + + demux(id_map, infile, tmp, task, maxtask) + + obs_r1 = gzip.open(join(tmp, 'Project_12345', 'b_R1.fastq.gz'), + 'rt').read() + obs_r2 = gzip.open(join(tmp, 'Project_12345', 'b_R2.fastq.gz'), + 'rt').read() + exp = '\n'.join(exp_data_r1) + '\n' + self.assertEqual(obs_r1, exp) + + exp = '\n'.join(exp_data_r2) + '\n' + self.assertEqual(obs_r2, exp) + + self.assertFalse(os.path.exists(join(tmp, 'a_R1.fastq.gz'))) + self.assertFalse(os.path.exists(join(tmp, 'a_R2.fastq.gz'))) + + def test_demux_w_metadata(self): + with TemporaryDirectory() as tmp: + id_map = [ + ["1", "a_R1", "a_R2", "Project_12345"], + ["2", "b_R1", "b_R2", "Project_12345"] + ] + + infile_data = '\n'.join(['@1::MUX::foo/1 BX:Z:TATGACAGATGCGGCCCT', + 'ATGC', '+', '!!!!', + '@1::MUX::foo/2 BX:Z:TATGACACATGCGGCCCT', + 'ATGC', '+', '!!!!', + '@1::MUX::bar/1 BX:Z:TATGACAAATGCGGCCCT', + 'ATGC', '+', '!!!!', + '@1::MUX::bar/2 BX:Z:TATGACACATGCGGCCCT', + 'ATGC', '+', '!!!!', + '@2::MUX::baz/1 BX:Z:TATGACATATGCGGCCCT', + 'ATGC', '+', '!!!!', + '@2::MUX::baz/2 BX:Z:TATGACCCATGCGGCCCT', + 'ATGC', '+', '!!!!', + '@2::MUX::bing/1 BX:Z:TATGAGGCATGCGGCCCT', + 'ATGC', '+', '!!!!', + '@2::MUX::bing/2 BX:Z:TATGACGCATGCGGCCCT', + 'ATGC', '+', '!!!!', + '']) + infile = io.StringIO(infile_data) + + exp_data_r1 = ['@baz/1 BX:Z:TATGACATATGCGGCCCT', + 'ATGC', '+', '!!!!', + '@bing/1 BX:Z:TATGAGGCATGCGGCCCT', + 'ATGC', '+', '!!!!'] + exp_data_r2 = ['@baz/2 BX:Z:TATGACCCATGCGGCCCT', + 'ATGC', '+', '!!!!', + '@bing/2 BX:Z:TATGACGCATGCGGCCCT', + 'ATGC', '+', '!!!!'] + + task = 1 + maxtask = 2 + + demux(id_map, infile, tmp, task, maxtask) + + obs_r1 = gzip.open(join(tmp, 'Project_12345', 'b_R1.fastq.gz'), + 'rt').read() + obs_r2 = gzip.open(join(tmp, 'Project_12345', 'b_R2.fastq.gz'), + 'rt').read() + exp = '\n'.join(exp_data_r1) + '\n' + self.assertEqual(obs_r1, exp) + + exp = '\n'.join(exp_data_r2) + '\n' + self.assertEqual(obs_r2, exp) + + self.assertFalse(os.path.exists(join(tmp, 'a_R1.fastq.gz'))) + self.assertFalse(os.path.exists(join(tmp, 'a_R2.fastq.gz'))) + + +if __name__ == '__main__': + unittest.main() diff --git a/qp_klp/tests/test_helpers.py b/tests/test_helpers.py similarity index 98% rename from qp_klp/tests/test_helpers.py rename to tests/test_helpers.py index 286484e7..f25e2382 100644 --- a/qp_klp/tests/test_helpers.py +++ b/tests/test_helpers.py @@ -20,7 +20,7 @@ class FakeClient(): def __init__(self): self.cwd = getcwd() - self.base_path = join(self.cwd, 'qp_klp/tests/data/QDir') + self.base_path = join(self.cwd, 'tests/data/QDir') self.qdirs = {'Demultiplexed': 'Demultiplexed', 'beta_div_plots': 'analysis/beta_div_plots', 'rarefaction_curves': 'analysis/rarefaction_curves', @@ -164,7 +164,7 @@ def post(self, url, data=None): class AnotherFakeClient(): def __init__(self): self.cwd = getcwd() - self.base_path = join(self.cwd, 'qp_klp/tests/data/QDir') + self.base_path = join(self.cwd, 'tests/data/QDir') self.qdirs = {'Demultiplexed': 'Demultiplexed', 'beta_div_plots': 'analysis/beta_div_plots', 'rarefaction_curves': 'analysis/rarefaction_curves', @@ -226,7 +226,7 @@ def setUp(self): # self.fake_bin_path = self.get_searchable_path() # self.output_dir represents a qiita working directory. - package_root = abspath('./qp_klp/tests/data') + package_root = abspath('../tests/data') self.output_dir = join(package_root, "077c4da8-74eb-4184-8860-0207f53623be") self.delete_these_dirs = [self.output_dir] @@ -237,11 +237,11 @@ def setUp(self): self.debug = False self.fake_client = FakeClient() self.kwargs = { - "uif_path": "qp_klp/tests/data/sample-sheets/metagenomic/" + "uif_path": "tests/data/sample-sheets/metagenomic/" "illumina/good_sheet1.csv", "qclient": self.fake_client, "lane_number": "1", - "config_fp": "qp_klp/tests/data/configuration.json", + "config_fp": "tests/configuration.json", "run_identifier": '211021_A00000_0000_SAMPLE', "output_dir": self.output_dir, "job_id": "077c4da8-74eb-4184-8860-0207f53623be", diff --git a/tests/test_util.py b/tests/test_util.py new file mode 100644 index 00000000..e5073101 --- /dev/null +++ b/tests/test_util.py @@ -0,0 +1,45 @@ +import unittest +from sequence_processing_pipeline.util import iter_paired_files + + +class TestUtil(unittest.TestCase): + def test_iter_paired_files(self): + # tuples of randomly ordered fastq files and thier expected + # sorted and organized output from iter_paired_files(). + + # underscore filenames updated to require '_001.fastq.gz'. + # legacy dot filenames test remains as-is. + tests = [(['b_R2_001.fastq.gz', 'a_R1_001.fastq.gz', + 'a_R2_001.fastq.gz', 'b_R1_001.fastq.gz'], + [('a_R1_001.fastq.gz', 'a_R2_001.fastq.gz'), + ('b_R1_001.fastq.gz', 'b_R2_001.fastq.gz')]), + (['a.R1.foo', 'b.R2.bar', 'a.R2.baz', 'b.R1.bing'], + [('a.R1.foo', 'a.R2.baz'), ('b.R1.bing', 'b.R2.bar')])] + + for files, exp in tests: + obs = list(iter_paired_files(files)) + self.assertEqual(obs, exp) + + def test_iter_paired_files_uneven(self): + files = ['a', 'b', 'c'] + with self.assertRaisesRegex(ValueError, "not paired"): + list(iter_paired_files(files)) + + def test_iter_paired_files_no_match(self): + files = ['a-R1-foo', 'a-R2-foo'] + with self.assertRaisesRegex(ValueError, "Unable to"): + list(iter_paired_files(files)) + + def test_iter_paired_files_bad_pair(self): + files = ['a.R1.foo', 'a_R2_bar'] + with self.assertRaisesRegex(ValueError, "Cannot find"): + list(iter_paired_files(files)) + + def test_iter_paired_files_mismatch_prefix(self): + files = ['a_R1_001.fastq.gz', 'ab_R2_001.fastq.gz'] + with self.assertRaisesRegex(ValueError, "Mismatch prefixes"): + list(iter_paired_files(files)) + + +if __name__ == '__main__': + unittest.main() diff --git a/qp_klp/tests/test_workflows.py b/tests/test_workflows.py similarity index 94% rename from qp_klp/tests/test_workflows.py rename to tests/test_workflows.py index 6a667fe3..5c013519 100644 --- a/qp_klp/tests/test_workflows.py +++ b/tests/test_workflows.py @@ -22,7 +22,7 @@ class FakeClient(): def __init__(self): self.cwd = getcwd() - self.base_path = join(self.cwd, 'qp_klp/tests/data/QDir') + self.base_path = join(self.cwd, 'tests/data/QDir') self.qdirs = {'Demultiplexed': 'Demultiplexed', 'beta_div_plots': 'analysis/beta_div_plots', 'rarefaction_curves': 'analysis/rarefaction_curves', @@ -171,7 +171,8 @@ def setUp(self): self.fake_bin_path = self.get_searchable_path() # self.output_dir represents a qiita working directory. - package_root = abspath('./qp_klp/tests/data') + package_root = abspath('tests/data') + self.cwd = package_root.replace('tests/data', '') self.output_dir = join(package_root, "077c4da8-74eb-4184-8860-0207f53623be") self.delete_these_dirs = [self.output_dir] @@ -267,7 +268,7 @@ def test_partial_metagenomic_pipeline(self): # use the list of sample_ids found in the sample-sheet to generate # fake fastq files for convert_raw_to_fastq() to find and manipulate. - sheet = load_sample_sheet("qp_klp/tests/data/sample-sheets/metagenomic" + sheet = load_sample_sheet("tests/data/sample-sheets/metagenomic" "/illumina/good_sheet1.csv") exp = defaultdict(list) for sample in sheet.samples: @@ -310,11 +311,11 @@ def test_partial_metagenomic_pipeline(self): # it is the correct one; that is confirmed in other tests. Run # convert_raw_to_fastq() and confirm that the directory structure and # the audit results match what is expected. - kwargs = {"uif_path": "qp_klp/tests/data/sample-sheets/metagenomic/" + kwargs = {"uif_path": "tests/data/sample-sheets/metagenomic/" "illumina/good_sheet1.csv", "qclient": FakeClient(), "lane_number": "1", - "config_fp": "qp_klp/tests/data/configuration.json", + "config_fp": "tests/configuration.json", "run_identifier": '211021_A00000_0000_SAMPLE', "output_dir": self.output_dir, "job_id": "077c4da8-74eb-4184-8860-0207f53623be", @@ -352,17 +353,17 @@ def test_partial_metagenomic_pipeline(self): 'set -x', 'date', 'hostname', - 'cd qp_klp/tests/data/211021_A00000_0000_SAMPLE', + 'cd tests/data/211021_A00000_0000_SAMPLE', 'module load bclconvert_3.7.5', - 'bcl-convert --sample-sheet "qp_klp/tests/data/sample-sheets/' + 'bcl-convert --sample-sheet "tests/data/sample-sheets/' 'metagenomic/illumina/good_sheet1.csv" --output-directory ' - 'qp_klp/tests/data/077c4da8-74eb-4184-8860-0207f53623be/' + f'{self.cwd}tests/data/077c4da8-74eb-4184-8860-0207f53623be/' 'ConvertJob --bcl-input-directory . --bcl-num-decompression-' 'threads 16 --bcl-num-conversion-threads 16 --bcl-num-' 'compression-threads 16 --bcl-num-parallel-tiles 16 ' '--bcl-sampleproject-subdirectories true --force'] - with open("qp_klp/tests/data/077c4da8-74eb-4184-8860-0207f53623be/" + with open("tests/data/077c4da8-74eb-4184-8860-0207f53623be/" "ConvertJob/ConvertJob.sh", 'r') as f: obs = f.readlines() obs = [x.strip() for x in obs] @@ -474,7 +475,7 @@ def test_partial_metatranscriptomic_pipeline(self): # use the list of sample_ids found in the sample-sheet to generate # fake fastq files for convert_raw_to_fastq() to find and manipulate. - sheet = load_sample_sheet("qp_klp/tests/data/sample-sheets/meta" + sheet = load_sample_sheet("tests/data/sample-sheets/meta" "transcriptomic/illumina/good_sheet1.csv") exp = defaultdict(list) @@ -519,11 +520,11 @@ def test_partial_metatranscriptomic_pipeline(self): # it is the correct one; that is confirmed in other tests. Run # convert_raw_to_fastq() and confirm that the directory structure and # the audit results match what is expected. - kwargs = {"uif_path": "qp_klp/tests/data/sample-sheets/metatranscript" + kwargs = {"uif_path": "tests/data/sample-sheets/metatranscript" "omic/illumina/good_sheet1.csv", "qclient": FakeClient(), "lane_number": "2", - "config_fp": "qp_klp/tests/data/configuration.json", + "config_fp": "tests/configuration.json", "run_identifier": '211021_A00000_0000_SAMPLE', "output_dir": self.output_dir, "job_id": "077c4da8-74eb-4184-8860-0207f53623be", @@ -561,24 +562,23 @@ def test_partial_metatranscriptomic_pipeline(self): "set -x", "date", "hostname", - "cd qp_klp/tests/data/211021_A00000_0000_SAMPLE", + "cd tests/data/211021_A00000_0000_SAMPLE", "module load bclconvert_3.7.5", - "bcl-convert --sample-sheet \"qp_klp/tests/data/sample-sheets/" - "metatranscriptomic/illumina/good_sheet1.csv\" --output-directory" - " qp_klp/tests/data/077c4da8-74eb-4184-8860-0207f53623be/" + "bcl-convert --sample-sheet \"tests/data/sample-sheets/" + "metatranscriptomic/illumina/good_sheet1.csv\" --output-directory " + f"{self.cwd}tests/data/077c4da8-74eb-4184-8860-0207f53623be/" "ConvertJob --bcl-input-directory . --bcl-num-decompression-" "threads 16 --bcl-num-conversion-threads 16 --bcl-num-compression" "-threads 16 --bcl-num-parallel-tiles 16 --bcl-sampleproject-" "subdirectories true --force" ] - with open("qp_klp/tests/data/077c4da8-74eb-4184-8860-0207f53623be/" + with open("tests/data/077c4da8-74eb-4184-8860-0207f53623be/" "ConvertJob/ConvertJob.sh", 'r') as f: obs = f.readlines() obs = [x.strip() for x in obs] obs = [re.sub('-directory .*?/qp_klp', '-directory qp_klp', x) for x in obs] - self.assertEqual(obs, exp) # ConvertJob successful. @@ -698,10 +698,10 @@ def test_partial_amplicon_pipeline(self): # it is the correct one; that is confirmed in other tests. Run # convert_raw_to_fastq() and confirm that the directory structure and # the audit results match what is expected. - kwargs = {"uif_path": "qp_klp/tests/data/pre-preps/good_pre_prep1.txt", + kwargs = {"uif_path": "tests/data/pre-preps/good_pre_prep1.txt", "qclient": FakeClient(), "lane_number": "1", - "config_fp": "qp_klp/tests/data/configuration.json", + "config_fp": "tests/configuration.json", "run_identifier": run_id, "output_dir": self.output_dir, "job_id": "077c4da8-74eb-4184-8860-0207f53623be", @@ -739,18 +739,18 @@ def test_partial_amplicon_pipeline(self): "set -x", "date", "hostname", - f"cd qp_klp/tests/data/{run_id}", + f"cd tests/data/{run_id}", "module load bcl2fastq_2.20.0.222", - "bcl2fastq --sample-sheet \"qp_klp/tests/data/077c4da8-74eb" + f"bcl2fastq --sample-sheet \"{self.cwd}tests/data/077c4da8-74eb" "-4184-8860-0207f53623be/dummy_sample_sheet.csv\" --minimum-" "trimmed-read-length 1 " - "--mask-short-adapter-reads 1 -R . -o qp_klp/tests/data/" + f"--mask-short-adapter-reads 1 -R . -o {self.cwd}tests/data/" "077c4da8-74eb-4184-8860-0207f53623be/ConvertJob " "--loading-threads 16 --processing-threads 16 --writing-" "threads 16 --create-fastq-for-index-reads --ignore-missing-" "positions"] - with open("qp_klp/tests/data/077c4da8-74eb-4184-8860-0207f53623be/" + with open("tests/data/077c4da8-74eb-4184-8860-0207f53623be/" "ConvertJob/ConvertJob.sh", 'r') as f: obs = f.readlines() obs = [x.strip() for x in obs] @@ -785,7 +785,7 @@ def test_partial_amplicon_pipeline(self): wf.post_process_raw_fastq_output() - base_path = "qp_klp/tests/data/077c4da8-74eb-4184-8860-0207f53623be" + base_path = "tests/data/077c4da8-74eb-4184-8860-0207f53623be" exp = [join(base_path, 'NuQCJob'), join(base_path, 'NuQCJob', 'TestProj_1'), @@ -869,11 +869,11 @@ def call_me_back(status): self.create_fake_bin('squeue.2', "echo 'JOBID,STATE\n" "9999991,COMPLETED'") - kwargs = {"uif_path": ("qp_klp/tests/data/sample-sheets/metagenomic" + kwargs = {"uif_path": ("tests/data/sample-sheets/metagenomic" "/tellseq/good_sheet1.csv"), "qclient": FakeClient(), "lane_number": "4", - "config_fp": "qp_klp/tests/data/configuration.json", + "config_fp": "tests/configuration.json", "run_identifier": '211021_A00000_0000_SAMPLE', "output_dir": self.output_dir, "job_id": "077c4da8-74eb-4184-8860-0207f53623be", @@ -890,24 +890,16 @@ def call_me_back(status): trjob_script = join(trjob_dir, 'tellread_test.sbatch') self.assertTrue(exists(trjob_script)) - def open_job_script(script_path): + def open_job_script(self, script_path): with open(script_path, 'r') as f: obs = f.readlines() - obs = [x.strip() for x in obs] - obs = [re.sub('-directory .*?/qp_klp', - '-directory qp_klp', x) for x in obs] - obs = [re.sub('--output .*?/qp_klp', '--output qp_klp', - x) for x in obs] - obs = [re.sub('--error .*?/qp_klp', '--error qp_klp', - x) for x in obs] - obs = [re.sub('find .*?/qp_klp', 'find qp_klp', - x) for x in obs] - obs = [re.sub('-o .*?/qp_klp', '-o qp_klp', - x) for x in obs] + obs = [x.strip().replace( + '/home/runner/qp-knight-lab-processing/', self.cwd) + for x in obs] return obs - obs = open_job_script(trjob_script) - exp = open_job_script("qp_klp/tests/data/tellread_test.sbatch") + obs = open_job_script(self, trjob_script) + exp = open_job_script(self, "tests/data/tellread_test.sbatch") self.assertEqual(obs, exp)