AGOUTI uses paired-end RNA-seq reads to guide genome scaffolding and improve gene annotation.
Please see http://agouti.readthedocs.io/en/latest/ for more information
AGOUTI is published here:
http://gigascience.biomedcentral.com/articles/10.1186/s13742-016-0136-3
Please cite AGOUTI using the following format:
Zhang, S. V, Zhuo, L., & Hahn, M. W. (2016). AGOUTI: improving genome assembly and annotation using transcriptome data. GigaScience, 5(1), 1.12. doi:10.1186/s13742-016-0136-3
Please submit your problems or questions through GitHub issue tracker.