Investigate possible memory leaks

[scharlton2]

ctest -S cmemcheck.cmake -VV --output-on-failure -j

Results

PostProcessTest memcheck results for : TestRM

100% tests passed, 0 tests failed out of 3

Total Test time (real) = 362.90 sec
-- Processing memory checking output:
1/3 MemCheck: #2: TestBMIdtor ...................... Defects: 1
2/3 MemCheck: #1: TestRMdtor ....................... Defects: 1
3/3 MemCheck: #3: TestRM ........................... Defects: 8
MemCheck log files can be found here: (<#> corresponds to test number)
/home/charlton/source/repos/coupled/phreeqcrm/_cmemcheck/Testing/Temporary/MemoryChecker.<#>.log
Memory checking results:
Memory Leak - 2
Potential Memory Leak - 8

MemoryChecker.1.log

==7466== 128 bytes in 1 blocks are still reachable in loss record 1 of 1
==7466== at 0x484DCD3: realloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==7466== by 0x48BB8AC: ??? (in /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0)
==7466== by 0x48CE184: ??? (in /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0)
==7466== by 0x48B9FE1: ??? (in /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0)
==7466== by 0x400647D: call_init.part.0 (dl-init.c:70)
==7466== by 0x4006567: call_init (dl-init.c:33)
==7466== by 0x4006567: _dl_init (dl-init.c:117)
==7466== by 0x40202C9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2)
==7466==

MemoryChecker.2.log

==7467== 128 bytes in 1 blocks are still reachable in loss record 1 of 1
==7467== at 0x484DCD3: realloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==7467== by 0x48BB8AC: ??? (in /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0)
==7467== by 0x48CE184: ??? (in /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0)
==7467== by 0x48B9FE1: ??? (in /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0)
==7467== by 0x400647D: call_init.part.0 (dl-init.c:70)
==7467== by 0x4006567: call_init (dl-init.c:33)
==7467== by 0x4006567: _dl_init (dl-init.c:117)
==7467== by 0x40202C9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2)
==7467==

MemoryChecker.3.log 1 of 97

==7468== 16 bytes in 1 blocks are indirectly lost in loss record 1 of 97
==7468== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==7468== by 0x488AAD9: YAML::detail::memory::create_node() (in /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.7.0)
==7468== by 0x49A5D1: YAML::detail::memory_holder::create_node() (memory.h:38)
==7468== by 0x49ADCE: YAML::Node::EnsureNodeExists() const (impl.h:63)
==7468== by 0x49C2A5: YAML::Node YAML::Node::operator[]<char [4]>(char const (&) [4]) (impl.h:337)
==7468== by 0x4975E7: YAMLPhreeqcRM::YAMLSetGridCellCount(int) (YAMLPhreeqcRM.cpp:342)
==7468== by 0x4931CD: YAMLSetGridCellCount (YAML_interface_C.cpp:423)
==7468== by 0x149128: TestAllMethods_c (TestAllMethods_c.c:48)
==7468== by 0x13FED6: main (main.cpp:87)
==7468==

MemoryChecker.3.log 2 of 97

==7468== 16 bytes in 1 blocks are indirectly lost in loss record 2 of 97
==7468== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==7468== by 0x488AAD9: YAML::detail::memory::create_node() (in /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.7.0)
==7468== by 0x49A5D1: YAML::detail::memory_holder::create_node() (memory.h:38)
==7468== by 0x49BD3E: YAML::Node::Node<char const*>(char const* const&) (impl.h:35)
==7468== by 0x4A6914: YAML::convert<char [4]>::encode(char const*) (convert.h:87)
==7468== by 0x4A4830: YAML::detail::node& YAML::detail::node_data::convert_to_node<char [4]>(char const (&) [4], std::shared_ptrYAML::detail::memory_holder) (impl.h:227)
==7468== by 0x4A125D: YAML::detail::node& YAML::detail::node_data::get<char [4]>(char const (&) [4], std::shared_ptrYAML::detail::memory_holder) (impl.h:168)
==7468== by 0x49FD26: YAML::detail::node& YAML::detail::node_ref::get<char [4]>(char const (&) [4], std::shared_ptrYAML::detail::memory_holder) (node_ref.h:68)
==7468== by 0x49DFE8: YAML::detail::node& YAML::detail::node::get<char [4]>(char const (&) [4], std::shared_ptrYAML::detail::memory_holder) (node.h:135)
==7468== by 0x49C2D7: YAML::Node YAML::Node::operator[]<char [4]>(char const (&) [4]) (impl.h:338)
==7468== by 0x4975E7: YAMLPhreeqcRM::YAMLSetGridCellCount(int) (YAMLPhreeqcRM.cpp:342)
==7468== by 0x4931CD: YAMLSetGridCellCount (YAML_interface_C.cpp:423)
==7468== by 0x149128: TestAllMethods_c (TestAllMethods_c.c:48)
==7468== by 0x13FED6: main (main.cpp:87)

MemoryChecker.3.log 7 of 97

==7468== 16 bytes in 1 blocks are indirectly lost in loss record 7 of 97
==7468== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==7468== by 0x49AD9B: YAML::Node::EnsureNodeExists() const (impl.h:62)
==7468== by 0x49B2D3: YAML::Node::push_back(YAML::Node const&) (impl.h:311)
==7468== by 0x497661: YAMLPhreeqcRM::YAMLSetGridCellCount(int) (YAMLPhreeqcRM.cpp:344)
==7468== by 0x4931CD: YAMLSetGridCellCount (YAML_interface_C.cpp:423)
==7468== by 0x149128: TestAllMethods_c (TestAllMethods_c.c:48)
==7468== by 0x13FED6: main (main.cpp:87)

MemoryChecker.3.log 15 of 97

==7468== 16 bytes in 1 blocks are indirectly lost in loss record 15 of 97
==7468== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==7468== by 0x4888FB5: ??? (in /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.7.0)
==7468== by 0x488C5F2: YAML::detail::node_data::push_back(YAML::detail::node&, std::shared_ptrYAML::detail::memory_holder const&) (in /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.7.0)
==7468== by 0x49A793: YAML::detail::node_ref::push_back(YAML::detail::node&, std::shared_ptrYAML::detail::memory_holder) (node_ref.h:55)
==7468== by 0x49ABB0: YAML::detail::node::push_back(YAML::detail::node&, std::shared_ptrYAML::detail::memory_holder) (node.h:115)
==7468== by 0x49B315: YAML::Node::push_back(YAML::Node const&) (impl.h:314)
==7468== by 0x499D6D: YAMLPhreeqcRM::YAMLThreadCount(int) (YAMLPhreeqcRM.cpp:586)
==7468== by 0x4941F0: YAMLThreadCount (YAML_interface_C.cpp:736)
==7468== by 0x149140: TestAllMethods_c (TestAllMethods_c.c:49)
==7468== by 0x13FED6: main (main.cpp:87)

MemoryChecker.3.log 33 of 97

==7468== 24 bytes in 1 blocks are indirectly lost in loss record 33 of 97
==7468== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==7468== by 0x4A0A15: std::__shared_count<(__gnu_cxx::_Lock_policy)2>::__shared_countYAML::detail::memory*(YAML::detail::memory*) (shared_ptr_base.h:596)
==7468== by 0x49F12C: std::__shared_count<(__gnu_cxx::_Lock_policy)2>::__shared_countYAML::detail::memory*(YAML::detail::memory*, std::integral_constant<bool, false>) (shared_ptr_base.h:607)
==7468== by 0x49D779: std::__shared_ptr<YAML::detail::memory, (__gnu_cxx::_Lock_policy)2>::__shared_ptr<YAML::detail::memory, void>(YAML::detail::memory*) (shared_ptr_base.h:1099)
==7468== by 0x49B8CA: std::shared_ptrYAML::detail::memory::shared_ptr<YAML::detail::memory, void>(YAML::detail::memory*) (shared_ptr.h:160)
==7468== by 0x49A5A2: YAML::detail::memory_holder::memory_holder() (memory.h:36)
==7468== by 0x49ADAA: YAML::Node::EnsureNodeExists() const (impl.h:62)
==7468== by 0x49B2D3: YAML::Node::push_back(YAML::Node const&) (impl.h:311)
==7468== by 0x497661: YAMLPhreeqcRM::YAMLSetGridCellCount(int) (YAMLPhreeqcRM.cpp:344)
==7468== by 0x4931CD: YAMLSetGridCellCount (YAML_interface_C.cpp:423)
==7468== by 0x149128: TestAllMethods_c (TestAllMethods_c.c:48)
==7468== by 0x13FED6: main (main.cpp:87)

MemoryChecker.3.log 91 of 97

==7468== 192 (128 direct, 64 indirect) bytes in 1 blocks are definitely lost in loss record 91 of 97
==7468== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==7468== by 0x49A09F: YAMLPhreeqcRMLib::CreateYAMLPhreeqcRM() (YAMLPhreeqcRM.cpp:615)
==7468== by 0x490E0C: CreateYAMLPhreeqcRM (YAML_interface_C.cpp:10)
==7468== by 0x14910D: TestAllMethods_c (TestAllMethods_c.c:46)
==7468== by 0x13FED6: main (main.cpp:87)

MemoryChecker.3.log 97 of 97

==7468== 4,879 (48 direct, 4,831 indirect) bytes in 1 blocks are definitely lost in loss record 97 of 97
==7468== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==7468== by 0x48994E3: ??? (in /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.7.0)
==7468== by 0x488A80A: YAML::detail::memory::merge(YAML::detail::memory const&) (in /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.7.0)
==7468== by 0x488A883: YAML::detail::memory_holder::merge(YAML::detail::memory_holder&) (in /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.7.0)
==7468== by 0x49B34F: YAML::Node::push_back(YAML::Node const&) (impl.h:315)
==7468== by 0x497661: YAMLPhreeqcRM::YAMLSetGridCellCount(int) (YAMLPhreeqcRM.cpp:344)
==7468== by 0x4931CD: YAMLSetGridCellCount (YAML_interface_C.cpp:423)
==7468== by 0x149128: TestAllMethods_c (TestAllMethods_c.c:48)
==7468== by 0x13FED6: main (main.cpp:87)

MemoryChecker.3.log