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$ ctest
Test project /home/charlton/source/repos/coupled/scharlton2/phreeqcrm-cmake_generate_export_header/_cmake
Start 1: TestRMdtor
1/6 Test #1: TestRMdtor ....................... Passed 0.01 sec
Start 2: TestBMIdtor
2/6 Test #2: TestBMIdtor ...................... Passed 0.00 sec
Start 3: TestRM
3/6 Test #3: TestRM ........................... Passed 1.07 sec
Start 4: SimpleAdvect.py
4/6 Test #4: SimpleAdvect.py .................. Passed 0.26 sec
Start 5: WriteYAMLFile_py.py
5/6 Test #5: WriteYAMLFile_py.py .............. Passed 0.18 sec
Start 6: AdvectBMI_py.py
6/6 Test #6: AdvectBMI_py.py ..................Subprocess aborted***Exception: 1.94 sec
83% tests passed, 1 tests failed out of 6
Total Test time (real) = 3.46 sec
The following tests FAILED:
6 - AdvectBMI_py.py (Subprocess aborted)
Errors while running CTest
Output from these tests are in: /home/charlton/source/repos/coupled/scharlton2/phreeqcrm-cmake_generate_export_header/_cmake/Testing/Temporary/LastTest.log
Use "--rerun-failed --output-on-failure" to re-run the failed cases verbosely.
$ cmake . -L
-- Configuring done
-- Generating done
-- Build files have been written to: /home/charlton/source/repos/coupled/scharlton2/phreeqcrm-cmake_generate_export_header/_cmake
-- Cache values
BUILD_SHARED_LIBS:BOOL=ON
CMAKE_BUILD_TYPE:STRING=Debug
CMAKE_INSTALL_PREFIX:PATH=/home/charlton/source/repos/coupled/scharlton2/phreeqcrm-cmake_generate_export_header/_cmake/INSTALL
PHREEQCRM_BUILD_MPI:BOOL=OFF
PHREEQCRM_BUILD_PYTHON:BOOL=ON
PHREEQCRM_DISABLE_OPENMP:BOOL=OFF
PHREEQCRM_FORTRAN_TESTING:BOOL=ON
PHREEQCRM_NO_UTF8_ENCODING:BOOL=OFF
PHREEQCRM_USE_ZLIB:BOOL=OFF
PHREEQCRM_WITH_YAML_CPP:BOOL=OFF
yaml-cpp_DIR:PATH=/usr/lib/x86_64-linux-gnu/cmake/yaml-cpp
$ cat /home/charlton/source/repos/coupled/scharlton2/phreeqcrm-cmake_generate_export_header/_cmake/Testing/Temporary/LastTest.log
Start testing: Jun 16 22:03 MDT
----------------------------------------------------------
1/6 Testing: TestRMdtor
1/6 Test: TestRMdtor
Command: "/home/charlton/source/repos/coupled/scharlton2/phreeqcrm-cmake_generate_export_header/_cmake/Tests/TestRMdtor"
Directory: /home/charlton/source/repos/coupled/scharlton2/phreeqcrm-cmake_generate_export_header/_cmake/Tests
"TestRMdtor" start time: Jun 16 22:03 MDT
Output:
----------------------------------------------------------
<end of output>
Test time = 0.01 sec
----------------------------------------------------------
Test Passed.
"TestRMdtor" end time: Jun 16 22:03 MDT
"TestRMdtor" time elapsed: 00:00:00
----------------------------------------------------------
2/6 Testing: TestBMIdtor
2/6 Test: TestBMIdtor
Command: "/home/charlton/source/repos/coupled/scharlton2/phreeqcrm-cmake_generate_export_header/_cmake/Tests/TestBMIdtor"
Directory: /home/charlton/source/repos/coupled/scharlton2/phreeqcrm-cmake_generate_export_header/_cmake/Tests
"TestBMIdtor" start time: Jun 16 22:03 MDT
Output:
----------------------------------------------------------
<end of output>
Test time = 0.00 sec
----------------------------------------------------------
Test Passed.
"TestBMIdtor" end time: Jun 16 22:03 MDT
"TestBMIdtor" time elapsed: 00:00:00
----------------------------------------------------------
3/6 Testing: TestRM
3/6 Test: TestRM
Command: "/home/charlton/source/repos/coupled/scharlton2/phreeqcrm-cmake_generate_export_header/_cmake/Tests/TestRM"
Directory: /home/charlton/source/repos/coupled/scharlton2/phreeqcrm-cmake_generate_export_header/_cmake/Tests
"TestRM" start time: Jun 16 22:03 MDT
Output:
----------------------------------------------------------
Estimated efficiency of chemistry without communication: 68.641
Cells shifted between threads 0
Time rebalancing load 5.4805e-05
Cell Calcite
0 0.799962
1 0
2 0
Done units_tester.===================================
Estimated efficiency of chemistry without communication: 90.9129
Cells shifted between threads 2
Time rebalancing load 0.000272611
Beginning transport calculation 0 days
Time step 1 days
Beginning reaction calculation 1 days
Estimated efficiency of chemistry without communication: 96.3485
Cells shifted between threads 0
Time rebalancing load 3.6088e-05
Beginning transport calculation 1 days
Time step 1 days
Beginning reaction calculation 2 days
Estimated efficiency of chemistry without communication: 77.4543
Cells shifted between threads 2
Time rebalancing load 0.000286496
Beginning transport calculation 2 days
Time step 1 days
Beginning reaction calculation 3 days
Estimated efficiency of chemistry without communication: 84.7416
Cells shifted between threads 2
Time rebalancing load 0.000233305
Beginning transport calculation 3 days
Time step 1 days
Beginning reaction calculation 4 days
Estimated efficiency of chemistry without communication: 86.3238
Cells shifted between threads 0
Time rebalancing load 3.5254e-05
Beginning transport calculation 4 days
Time step 1 days
Beginning reaction calculation 5 days
Estimated efficiency of chemistry without communication: 77.8801
Cells shifted between threads 1
Time rebalancing load 0.000196497
Beginning transport calculation 5 days
Time step 1 days
Beginning reaction calculation 6 days
Estimated efficiency of chemistry without communication: 87.7387
Cells shifted between threads 1
Time rebalancing load 0.000165878
Beginning transport calculation 6 days
Time step 1 days
Beginning reaction calculation 7 days
Estimated efficiency of chemistry without communication: 77.9636
Cells shifted between threads 2
Time rebalancing load 0.000285046
Beginning transport calculation 7 days
Time step 1 days
Beginning reaction calculation 8 days
Estimated efficiency of chemistry without communication: 86.9537
Cells shifted between threads 1
Time rebalancing load 0.000165765
Beginning transport calculation 8 days
Time step 1 days
Beginning reaction calculation 9 days
Estimated efficiency of chemistry without communication: 70.1657
Cells shifted between threads 1
Time rebalancing load 0.000198406
Beginning transport calculation 9 days
Time step 1 days
Beginning reaction calculation 10 days
Estimated efficiency of chemistry without communication: 69.7431
Cells shifted between threads 1
Time rebalancing load 0.000214012
Done SimpleAdvection_cpp.==================================
SELECTED_OUTPUT 2
-totals
Ca
Cl
K
N
Na
-molalities
Ca+2
CaOH+
Cl-
H+
H2
H2O
HCl
K+
N2
NH3
NH4+
NO2-
NO3-
Na+
NaOH
O2
OH-
CaX2 # X
KX # X
NaX # X
X- # X
-equilibrium_phases
-gases
-kinetics
-solid_solutions
-saturation_indices
H2(g)
H2O(g)
Halite
N2(g)
NH3(g)
O2(g)
Sylvite
Estimated efficiency of chemistry without communication: 94.6597
Cells shifted between threads 1
Time rebalancing load 0.000185479
Beginning transport calculation 0 days
Time step 1 days
Beginning reaction calculation 1 days
Estimated efficiency of chemistry without communication: 84.4585
Cells shifted between threads 2
Time rebalancing load 0.000246998
Beginning transport calculation 1 days
Time step 1 days
Beginning reaction calculation 2 days
Estimated efficiency of chemistry without communication: 76.5212
Cells shifted between threads 2
Time rebalancing load 0.000276065
Beginning transport calculation 2 days
Time step 1 days
Beginning reaction calculation 3 days
Estimated efficiency of chemistry without communication: 85.6866
Cells shifted between threads 2
Time rebalancing load 0.000283264
Beginning transport calculation 3 days
Time step 1 days
Beginning reaction calculation 4 days
Estimated efficiency of chemistry without communication: 79.1624
Cells shifted between threads 1
Time rebalancing load 0.000178572
Beginning transport calculation 4 days
Time step 1 days
Beginning reaction calculation 5 days
Estimated efficiency of chemistry without communication: 74.2856
Cells shifted between threads 1
Time rebalancing load 0.000197813
Beginning transport calculation 5 days
Time step 1 days
Beginning reaction calculation 6 days
Estimated efficiency of chemistry without communication: 88.5712
Cells shifted between threads 1
Time rebalancing load 0.000170887
Beginning transport calculation 6 days
Time step 1 days
Beginning reaction calculation 7 days
Estimated efficiency of chemistry without communication: 86.2708
Cells shifted between threads 1
Time rebalancing load 0.000177082
Beginning transport calculation 7 days
Time step 1 days
Beginning reaction calculation 8 days
Estimated efficiency of chemistry without communication: 78.4119
Cells shifted between threads 0
Time rebalancing load 3.7796e-05
Beginning transport calculation 8 days
Time step 1 days
Beginning reaction calculation 9 days
Estimated efficiency of chemistry without communication: 74.0903
Cells shifted between threads 1
Time rebalancing load 0.000171968
Beginning transport calculation 9 days
Time step 1 days
Beginning reaction calculation 10 days
Estimated efficiency of chemistry without communication: 75.4866
Cells shifted between threads 0
Time rebalancing load 4.1427e-05
Selected output sequence number: 0
Selected output user number: 1
Cell number 0
Calculated Density: 0.998305
Volume: 0.199758
Components:
0 H: 110.682
1 O: 55.3416
2 Charge: 4.57499e-18
3 Ca: 0.000598214
4 Cl: 0.00119643
5 K: 2.93754e-13
6 N: 0
7 Na: 2.51428e-19
Selected output:
0 Na(mol/kgw): 2.52179e-19
1 Cl(mol/kgw): 0.0012
2 K(mol/kgw): 2.94631e-13
3 Ca(mol/kgw): 0.0006
4 Temperature: 20
5 Pressure: 2
6 Hyd_K: 0
Dump 0% 100%
Done Advect_cpp.==================================
Estimated efficiency of chemistry without communication: 95.0594
Cells shifted between threads 0
Time rebalancing load 4.0176e-05
Beginning transport calculation 0.0 days
Time step 1.0 days
Beginning reaction calculation 1.0 days
Estimated efficiency of chemistry without communication: 84.4661
Cells shifted between threads 2
Time rebalancing load 0.000237174
Beginning transport calculation 1.0 days
Time step 1.0 days
Beginning reaction calculation 2.0 days
Estimated efficiency of chemistry without communication: 81.8959
Cells shifted between threads 2
Time rebalancing load 0.000242907
Beginning transport calculation 2.0 days
Time step 1.0 days
Beginning reaction calculation 3.0 days
Estimated efficiency of chemistry without communication: 92.9338
Cells shifted between threads 2
Time rebalancing load 0.000232963
Beginning transport calculation 3.0 days
Time step 1.0 days
Beginning reaction calculation 4.0 days
Estimated efficiency of chemistry without communication: 70.3064
Cells shifted between threads 1
Time rebalancing load 0.000185997
Beginning transport calculation 4.0 days
Time step 1.0 days
Beginning reaction calculation 5.0 days
Estimated efficiency of chemistry without communication: 83.0113
Cells shifted between threads 1
Time rebalancing load 0.000163589
Beginning transport calculation 5.0 days
Time step 1.0 days
Beginning reaction calculation 6.0 days
Estimated efficiency of chemistry without communication: 77.0474
Cells shifted between threads 1
Time rebalancing load 0.00017007
Beginning transport calculation 6.0 days
Time step 1.0 days
Beginning reaction calculation 7.0 days
Estimated efficiency of chemistry without communication: 92.1517
Cells shifted between threads 1
Time rebalancing load 0.000165396
Beginning transport calculation 7.0 days
Time step 1.0 days
Beginning reaction calculation 8.0 days
Estimated efficiency of chemistry without communication: 84.9908
Cells shifted between threads 1
Time rebalancing load 0.000172178
Beginning transport calculation 8.0 days
Time step 1.0 days
Beginning reaction calculation 9.0 days
Estimated efficiency of chemistry without communication: 72.867
Cells shifted between threads 1
Time rebalancing load 0.000175808
Beginning transport calculation 9.0 days
Time step 1.0 days
Beginning reaction calculation 10.0 days
Estimated efficiency of chemistry without communication: 74.4419
Cells shifted between threads 0
Time rebalancing load 3.7372e-05
Done SimpleAdvect_c.====================================
Estimated efficiency of chemistry without communication: 95.4761
Cells shifted between threads 0
Time rebalancing load 4.1325e-05
Beginning transport calculation 0.0 days
Time step 1.0 days
Beginning reaction calculation 1.0 days
Estimated efficiency of chemistry without communication: 84.1344
Cells shifted between threads 2
Time rebalancing load 0.000260994
Beginning transport calculation 1.0 days
Time step 1.0 days
Beginning reaction calculation 2.0 days
Estimated efficiency of chemistry without communication: 75.9957
Cells shifted between threads 2
Time rebalancing load 0.000261489
Beginning transport calculation 2.0 days
Time step 1.0 days
Beginning reaction calculation 3.0 days
Estimated efficiency of chemistry without communication: 73.2831
Cells shifted between threads 2
Time rebalancing load 0.000283519
Beginning transport calculation 3.0 days
Time step 1.0 days
Beginning reaction calculation 4.0 days
Estimated efficiency of chemistry without communication: 78.1056
Cells shifted between threads 2
Time rebalancing load 0.000231985
Beginning transport calculation 4.0 days
Time step 1.0 days
Beginning reaction calculation 5.0 days
Estimated efficiency of chemistry without communication: 79.0207
Cells shifted between threads 1
Time rebalancing load 0.000134213
Beginning transport calculation 5.0 days
Time step 1.0 days
Beginning reaction calculation 6.0 days
Estimated efficiency of chemistry without communication: 83.0071
Cells shifted between threads 2
Time rebalancing load 0.00023581
Beginning transport calculation 6.0 days
Time step 1.0 days
Beginning reaction calculation 7.0 days
Estimated efficiency of chemistry without communication: 86.9575
Cells shifted between threads 1
Time rebalancing load 0.000150231
Beginning transport calculation 7.0 days
Time step 1.0 days
Beginning reaction calculation 8.0 days
Estimated efficiency of chemistry without communication: 87.0022
Cells shifted between threads 1
Time rebalancing load 0.000150953
Beginning transport calculation 8.0 days
Time step 1.0 days
Beginning reaction calculation 9.0 days
Estimated efficiency of chemistry without communication: 74.0982
Cells shifted between threads 1
Time rebalancing load 0.000205387
Beginning transport calculation 9.0 days
Time step 1.0 days
Beginning reaction calculation 10.0 days
Estimated efficiency of chemistry without communication: 75.0307
Cells shifted between threads 0
Time rebalancing load 3.7189e-05
Current distribution of cells for workers
Worker First cell Last Cell
0 0 4
1 5 9
2 10 19
Selected output sequence number: 0
Selected output user number: 1
Cell number 0
Density: 0.998305
Volume: 0.199758
Components:
0 H: 110.6821
1 O: 55.3416
2 Charge: 0.0000
3 Ca: 0.0006
4 Cl: 0.0012
5 K: 0.0000
6 N: 0.0000
7 Na: 0.0000
Selected output:
0 Na(mol/kgw): 0.0000
1 Cl(mol/kgw): 0.0012
2 K(mol/kgw): 0.0000
3 Ca(mol/kgw): 0.0006
4 Temperature: 20.0000
5 Pressure: 2.0000
6 Hyd_K: 0.0000
Dump 0% 100%
Done Advect_c.====================================
Estimated efficiency of chemistry without communication: 80.8748
Cells shifted between threads 1
Time rebalancing load 0.00020068
Beginning transport calculation 0 days
Time step 1 days
Beginning reaction calculation 1 days
Estimated efficiency of chemistry without communication: 84.1394
Cells shifted between threads 2
Time rebalancing load 0.000270948
Beginning transport calculation 1 days
Time step 1 days
Beginning reaction calculation 2 days
Estimated efficiency of chemistry without communication: 82.2983
Cells shifted between threads 2
Time rebalancing load 0.000289869
Beginning transport calculation 2 days
Time step 1 days
Beginning reaction calculation 3 days
Estimated efficiency of chemistry without communication: 88.4665
Cells shifted between threads 1
Time rebalancing load 0.000159127
Beginning transport calculation 3 days
Time step 1 days
Beginning reaction calculation 4 days
Estimated efficiency of chemistry without communication: 87.6566
Cells shifted between threads 0
Time rebalancing load 3.7035e-05
Beginning transport calculation 4 days
Time step 1 days
Beginning reaction calculation 5 days
Estimated efficiency of chemistry without communication: 76.4426
Cells shifted between threads 1
Time rebalancing load 0.000206846
Beginning transport calculation 5 days
Time step 1 days
Beginning reaction calculation 6 days
Estimated efficiency of chemistry without communication: 89.0826
Cells shifted between threads 1
Time rebalancing load 0.000187046
Beginning transport calculation 6 days
Time step 1 days
Beginning reaction calculation 7 days
Estimated efficiency of chemistry without communication: 83.7277
Cells shifted between threads 1
Time rebalancing load 0.000180583
Beginning transport calculation 7 days
Time step 1 days
Beginning reaction calculation 8 days
Estimated efficiency of chemistry without communication: 75.6132
Cells shifted between threads 0
Time rebalancing load 2.8042e-05
Beginning transport calculation 8 days
Time step 1 days
Beginning reaction calculation 9 days
Estimated efficiency of chemistry without communication: 68.6382
Cells shifted between threads 1
Time rebalancing load 0.000208781
Beginning transport calculation 9 days
Time step 1 days
Beginning reaction calculation 10 days
Estimated efficiency of chemistry without communication: 73.7039
Cells shifted between threads 0
Time rebalancing load 3.9777e-05
Selected output sequence number: 0
Selected output user number: 1
Cell number 0
Calculated density: 0.998305
Volume: 0.199758
Components:
0 H2O: 55.408
1 H: 1.74028e-07
2 O: 0.000534204
3 Charge: 4.40649e-18
4 Ca: 0.000598938
5 Cl: 0.00119788
6 K: 2.94109e-13
7 N: 0
8 Na: 2.51732e-19
Species:
0 Ca+2 c: 0.000598937 lg: -0.0799519 lm: -3.22185
1 CaOH+ c: 1.03897e-09 lg: -0.0203105 lm: -8.98263
2 Cl- c: 0.00119788 lg: -0.0203954 lm: -2.92082
3 H+ c: 8.69803e-08 lg: -0.0190706 lm: -7.05981
4 H2 c: 0 lg: 0.000180009 lm: -45.225
5 H2O c: 55.408 lg: 0 lm: -1.52661e-05
6 HCl c: 3.38331e-11 lg: 0.000766116 lm: -10.4699
7 K+ c: 2.94109e-13 lg: -0.0204342 lm: -12.5307
8 N2 c: 0 lg: 0 lm: 0
9 NH3 c: 0 lg: 0 lm: 0
10 NH4+ c: 0 lg: 0 lm: 0
11 NO2- c: 0 lg: 0 lm: 0
12 NO3- c: 0 lg: 0 lm: 0
13 Na+ c: 2.51732e-19 lg: -0.0201575 lm: -18.5983
14 NaOH c: 1.97321e-36 lg: 0.000180009 lm: -35.7041
15 O2 c: 0.000267059 lg: 0.000180009 lm: -3.57262
16 OH- c: 8.59751e-08 lg: -0.0204612 lm: -7.06486
Selected output:
0 Na(mol/kgw): 2.52179e-19
1 Cl(mol/kgw): 0.0012
2 K(mol/kgw): 2.94631e-13
3 Ca(mol/kgw): 0.0006
4 Temperature: 20
5 Pressure: 2
6 Hyd_K: 0
Dump 0% 100%
Done Species_cpp.====================================
Estimated efficiency of chemistry without communication: 97.3251
Cells shifted between threads 0
Time rebalancing load 4.0114e-05
Beginning transport calculation 0.0 days
Time step 1.0 days
Beginning reaction calculation 1.0 days
Estimated efficiency of chemistry without communication: 85.5229
Cells shifted between threads 2
Time rebalancing load 0.000277731
Beginning transport calculation 1.0 days
Time step 1.0 days
Beginning reaction calculation 2.0 days
Estimated efficiency of chemistry without communication: 84.0366
Cells shifted between threads 2
Time rebalancing load 0.000275213
Beginning transport calculation 2.0 days
Time step 1.0 days
Beginning reaction calculation 3.0 days
Estimated efficiency of chemistry without communication: 76.4588
Cells shifted between threads 1
Time rebalancing load 0.000197851
Beginning transport calculation 3.0 days
Time step 1.0 days
Beginning reaction calculation 4.0 days
Estimated efficiency of chemistry without communication: 86.5239
Cells shifted between threads 1
Time rebalancing load 0.000193783
Beginning transport calculation 4.0 days
Time step 1.0 days
Beginning reaction calculation 5.0 days
Estimated efficiency of chemistry without communication: 76.7274
Cells shifted between threads 1
Time rebalancing load 0.000192285
Beginning transport calculation 5.0 days
Time step 1.0 days
Beginning reaction calculation 6.0 days
Estimated efficiency of chemistry without communication: 80.9048
Cells shifted between threads 2
Time rebalancing load 0.000284004
Beginning transport calculation 6.0 days
Time step 1.0 days
Beginning reaction calculation 7.0 days
Estimated efficiency of chemistry without communication: 89.8517
Cells shifted between threads 1
Time rebalancing load 0.00019624
Beginning transport calculation 7.0 days
Time step 1.0 days
Beginning reaction calculation 8.0 days
Estimated efficiency of chemistry without communication: 81.939
Cells shifted between threads 1
Time rebalancing load 0.000198175
Beginning transport calculation 8.0 days
Time step 1.0 days
Beginning reaction calculation 9.0 days
Estimated efficiency of chemistry without communication: 68.8657
Cells shifted between threads 1
Time rebalancing load 0.000197114
Beginning transport calculation 9.0 days
Time step 1.0 days
Beginning reaction calculation 10.0 days
Estimated efficiency of chemistry without communication: 73.2693
Cells shifted between threads 0
Time rebalancing load 4.0189e-05
Selected output sequence number: 0
Selected output user number: 1
Cell number 0
Density: 0.998305
Volume: 0.199758
Components:
0 H2O: 55.4080
1 H: 0.0000
2 O: 0.0005
3 Charge: 0.0000
4 Ca: 0.0006
5 Cl: 0.0012
6 K: 0.0000
7 N: 0.0000
8 Na: 0.0000
Species:
0 Ca+2: 5.99e-04 -0.0800 -3.22e+00
1 CaOH+: 1.04e-09 -0.0203 -8.98e+00
2 Cl-: 1.20e-03 -0.0204 -2.92e+00
3 H+: 8.70e-08 -0.0191 -7.06e+00
4 H2: 0.00e+00 0.0002 -4.52e+01
5 H2O: 5.54e+01 0.0000 -1.53e-05
6 HCl: 3.38e-11 0.0008 -1.05e+01
7 K+: 2.94e-13 -0.0204 -1.25e+01
8 N2: 0.00e+00 0.0000 0.00e+00
9 NH3: 0.00e+00 0.0000 0.00e+00
10 NH4+: 0.00e+00 0.0000 0.00e+00
11 NO2-: 0.00e+00 0.0000 0.00e+00
12 NO3-: 0.00e+00 0.0000 0.00e+00
13 Na+: 2.52e-19 -0.0202 -1.86e+01
14 NaOH: 1.97e-36 0.0002 -3.57e+01
15 O2: 2.67e-04 0.0002 -3.57e+00
16 OH-: 8.60e-08 -0.0205 -7.06e+00
Selected output:
0 Na(mol/kgw): 0.0000
1 Cl(mol/kgw): 0.0012
2 K(mol/kgw): 0.0000
3 Ca(mol/kgw): 0.0006
4 Temperature: 20.0000
5 Pressure: 2.0000
6 Hyd_K: 0.0000
Dump 0% 100%
Done Species_c.======================================
Initial conditions
Cell: 0
Moles P Phi
CH4(g) 0.0100 0.0100 0.9999
Ntg(g) 0.0200 0.0200 1.0000
Oxg(g) 0.0300 0.0300 0.9999
Cell: 1
Moles P Phi
CH4(g) 0.0501 0.0500 0.9995
Ntg(g) 0.0701 0.0700 0.9999
Oxg(g) 0.1102 0.1100 0.9998
Cell: 2
Moles P Phi
CH4(g) 0.1302 0.1300 0.9990
Ntg(g) 0.1703 0.1700 0.9998
Oxg(g) 0.1904 0.1900 0.9995
Initial conditions times 2
Cell: 0
Moles P Phi
CH4(g) 0.0200 0.0100 0.9999
Ntg(g) 0.0401 0.0200 1.0000
Oxg(g) 0.0601 0.0300 0.9999
Cell: 1
Moles P Phi
CH4(g) 0.1002 0.0500 0.9995
Ntg(g) 0.1402 0.0700 0.9999
Oxg(g) 0.2204 0.1100 0.9998
Cell: 2
Moles P Phi
CH4(g) 0.2605 0.1300 0.9990
Ntg(g) 0.3406 0.1700 0.9998
Oxg(g) 0.3807 0.1900 0.9995
Estimated efficiency of chemistry without communication: 89.4973
Cells shifted between threads 1
Time rebalancing load 0.000181416
Remove some components
Cell: 0
Moles P Phi
CH4(g) -1.0000 -1.0000 -1.0000
Ntg(g) 0.0401 0.0400 1.0000
Oxg(g) 0.0601 0.0600 0.9999
Cell: 1
Moles P Phi
CH4(g) -1.0000 -1.0000 -1.0000
Ntg(g) -1.0000 -1.0000 -1.0000
Oxg(g) -1.0000 -1.0000 -1.0000
Cell: 2
Moles P Phi
CH4(g) 0.2605 0.2598 0.9980
Ntg(g) 0.3406 0.3398 0.9996
Oxg(g) 0.3807 0.3798 0.9991
Estimated efficiency of chemistry without communication: 68.077
Cells shifted between threads 3
Time rebalancing load 0.000299644
Add components back
Cell: 0
Moles P Phi
CH4(g) 0.0200 0.0200 0.9998
Ntg(g) 0.0401 0.0400 0.9999
Oxg(g) 0.0601 0.0600 0.9999
Cell: 1
Moles P Phi
CH4(g) 0.0100 0.0200 0.9998
Ntg(g) 0.0200 0.0399 0.9999
Oxg(g) 0.0300 0.0599 0.9999
Cell: 2
Moles P Phi
CH4(g) 0.2605 0.2598 0.9980
Ntg(g) 0.3406 0.3398 0.9996
Oxg(g) 0.3807 0.3798 0.9991
Done Gas_ccp.========================================
Initial conditions
Cell: 0
Moles P Phi
CH4(g) 0.0100 0.0100 0.9999
Ntg(g) 0.0200 0.0200 1.0000
Oxg(g) 0.0300 0.0300 0.9999
Cell: 1
Moles P Phi
CH4(g) 0.0501 0.0500 0.9995
Ntg(g) 0.0701 0.0700 0.9999
Oxg(g) 0.1102 0.1100 0.9998
Cell: 2
Moles P Phi
CH4(g) 0.1302 0.1300 0.9990
Ntg(g) 0.1703 0.1700 0.9998
Oxg(g) 0.1904 0.1900 0.9995
Initial conditions times 2
Cell: 0
Moles P Phi
CH4(g) 0.0200 0.0100 0.9999
Ntg(g) 0.0401 0.0200 1.0000
Oxg(g) 0.0601 0.0300 0.9999
Cell: 1
Moles P Phi
CH4(g) 0.1002 0.0500 0.9995
Ntg(g) 0.1402 0.0700 0.9999
Oxg(g) 0.2204 0.1100 0.9998
Cell: 2
Moles P Phi
CH4(g) 0.2605 0.1300 0.9990
Ntg(g) 0.3406 0.1700 0.9998
Oxg(g) 0.3807 0.1900 0.9995
Estimated efficiency of chemistry without communication: 91.1392
Cells shifted between threads 1
Time rebalancing load 0.000156241
Remove some components
Cell: 0
Moles P Phi
CH4(g) -1.0000 -1.0000 -1.0000
Ntg(g) 0.0401 0.0400 1.0000
Oxg(g) 0.0601 0.0600 0.9999
Cell: 1
Moles P Phi
CH4(g) -1.0000 -1.0000 -1.0000
Ntg(g) -1.0000 -1.0000 -1.0000
Oxg(g) -1.0000 -1.0000 -1.0000
Cell: 2
Moles P Phi
CH4(g) 0.2605 0.2598 0.9980
Ntg(g) 0.3406 0.3398 0.9996
Oxg(g) 0.3807 0.3798 0.9991
Estimated efficiency of chemistry without communication: 67.7193
Cells shifted between threads 6
Time rebalancing load 0.000531076
Add components back
Cell: 0
Moles P Phi
CH4(g) 0.0200 0.0200 0.9998
Ntg(g) 0.0401 0.0400 0.9999
Oxg(g) 0.0601 0.0600 0.9999
Cell: 1
Moles P Phi
CH4(g) 0.0100 0.0200 0.9998
Ntg(g) 0.0200 0.0399 0.9999
Oxg(g) 0.0300 0.0599 0.9999
Cell: 2
Moles P Phi
CH4(g) 0.2605 0.2598 0.9980
Ntg(g) 0.3406 0.3398 0.9996
Oxg(g) 0.3807 0.3798 0.9991
Done Gas_c.==========================================
Estimated efficiency of chemistry without communication: 96.2574
Cells shifted between threads 0
Time rebalancing load 3.9803e-05
Beginning transport calculation 0.0 days
Time step 1.0 days
Beginning reaction calculation 1.0 days
Estimated efficiency of chemistry without communication: 82.1627
Cells shifted between threads 2
Time rebalancing load 0.000253299
Beginning transport calculation 1.0 days
Time step 1.0 days
Beginning reaction calculation 2.0 days
Estimated efficiency of chemistry without communication: 76.3254
Cells shifted between threads 2
Time rebalancing load 0.000271545
Beginning transport calculation 2.0 days
Time step 1.0 days
Beginning reaction calculation 3.0 days
Estimated efficiency of chemistry without communication: 85.229
Cells shifted between threads 2
Time rebalancing load 0.000256837
Beginning transport calculation 3.0 days
Time step 1.0 days
Beginning reaction calculation 4.0 days
Estimated efficiency of chemistry without communication: 90.0764
Cells shifted between threads 0
Time rebalancing load 3.6221e-05
Beginning transport calculation 4.0 days
Time step 1.0 days
Beginning reaction calculation 5.0 days
Estimated efficiency of chemistry without communication: 75.6582
Cells shifted between threads 1
Time rebalancing load 0.000297476
Beginning transport calculation 5.0 days
Time step 1.0 days
Beginning reaction calculation 6.0 days
Estimated efficiency of chemistry without communication: 86.085
Cells shifted between threads 1
Time rebalancing load 0.000186275
Beginning transport calculation 6.0 days
Time step 1.0 days
Beginning reaction calculation 7.0 days
Estimated efficiency of chemistry without communication: 79.9228
Cells shifted between threads 2
Time rebalancing load 0.000283203
Beginning transport calculation 7.0 days
Time step 1.0 days
Beginning reaction calculation 8.0 days
Estimated efficiency of chemistry without communication: 87.0104
Cells shifted between threads 1
Time rebalancing load 0.000178483
Beginning transport calculation 8.0 days
Time step 1.0 days
Beginning reaction calculation 9.0 days
Estimated efficiency of chemistry without communication: 73.2579
Cells shifted between threads 1
Time rebalancing load 0.000181797
Beginning transport calculation 9.0 days
Time step 1.0 days
Beginning reaction calculation 10.0 days
Estimated efficiency of chemistry without communication: 76.7825
Cells shifted between threads 0
Time rebalancing load 3.8154e-05
Done SimpleAdvect_f90.==================================
Estimated efficiency of chemistry without communication: 96.7127
Cells shifted between threads 0
Time rebalancing load 4.0121e-05
Beginning transport calculation 0.0 days
Time step 1.0 days
Beginning reaction calculation 1.0 days
Estimated efficiency of chemistry without communication: 83.6405
Cells shifted between threads 2
Time rebalancing load 0.00024455
Beginning transport calculation 1.0 days
Time step 1.0 days
Beginning reaction calculation 2.0 days
Estimated efficiency of chemistry without communication: 77.6442
Cells shifted between threads 2
Time rebalancing load 0.00027931
Beginning transport calculation 2.0 days
Time step 1.0 days
Beginning reaction calculation 3.0 days
Estimated efficiency of chemistry without communication: 86.5406
Cells shifted between threads 2
Time rebalancing load 0.000282608
Beginning transport calculation 3.0 days
Time step 1.0 days
Beginning reaction calculation 4.0 days
Estimated efficiency of chemistry without communication: 87.0335
Cells shifted between threads 0
Time rebalancing load 3.3763e-05
Beginning transport calculation 4.0 days
Time step 1.0 days
Beginning reaction calculation 5.0 days
Estimated efficiency of chemistry without communication: 78.447
Cells shifted between threads 1
Time rebalancing load 0.000184029
Beginning transport calculation 5.0 days
Time step 1.0 days
Beginning reaction calculation 6.0 days
Estimated efficiency of chemistry without communication: 85.6836
Cells shifted between threads 2
Time rebalancing load 0.00026996
Beginning transport calculation 6.0 days
Time step 1.0 days
Beginning reaction calculation 7.0 days
Estimated efficiency of chemistry without communication: 84.2167
Cells shifted between threads 1
Time rebalancing load 0.000167754
Beginning transport calculation 7.0 days
Time step 1.0 days
Beginning reaction calculation 8.0 days
Estimated efficiency of chemistry without communication: 84.8815
Cells shifted between threads 1
Time rebalancing load 0.00016451
Beginning transport calculation 8.0 days
Time step 1.0 days
Beginning reaction calculation 9.0 days
Estimated efficiency of chemistry without communication: 73.2917
Cells shifted between threads 1
Time rebalancing load 0.000174161
Beginning transport calculation 9.0 days
Time step 1.0 days
Beginning reaction calculation 10.0 days
Estimated efficiency of chemistry without communication: 75.1402
Cells shifted between threads 0
Time rebalancing load 3.9714e-05
Current distribution of cells for workers
Worker First cell Last Cell
1 0 4
2 5 9
3 10 19
Selected output sequence number: 1
Selected output user number: 1
Cell number 1
Calculated Density: 0.99830524785028685
Volume: 0.19975836055633187
Components:
1 H: 110.6821
2 O: 55.3416
3 Charge: 0.0000
4 Ca: 0.0006
5 Cl: 0.0012
6 K: 0.0000
7 N: 0.0000
8 Na: 0.0000
Selected output:
1 Na(mol/kgw): 2.5218E-19
2 Cl(mol/kgw): 1.2000E-03
3 K(mol/kgw): 2.9463E-13
4 Ca(mol/kgw): 6.0000E-04
5 Temperature: 2.0000E+01
6 Pressure: 2.0000E+00
7 Hyd_K: 2.0000E+00
Dump 0% 100%
Done Advect_f90.==================================
Estimated efficiency of chemistry without communication: 94.7287
Cells shifted between threads 2
Time rebalancing load 0.000290058
Beginning transport calculation 0.0 days
Time step 1.0 days
Beginning reaction calculation 1.0 days
Estimated efficiency of chemistry without communication: 95.8948
Cells shifted between threads 0
Time rebalancing load 4.7114e-05
Beginning transport calculation 1.0 days
Time step 1.0 days
Beginning reaction calculation 2.0 days
Estimated efficiency of chemistry without communication: 75.1367
Cells shifted between threads 2
Time rebalancing load 0.000296453
Beginning transport calculation 2.0 days
Time step 1.0 days
Beginning reaction calculation 3.0 days
Estimated efficiency of chemistry without communication: 92.4716
Cells shifted between threads 2
Time rebalancing load 0.00027413
Beginning transport calculation 3.0 days
Time step 1.0 days
Beginning reaction calculation 4.0 days
Estimated efficiency of chemistry without communication: 85.7217
Cells shifted between threads 0
Time rebalancing load 3.7525e-05
Beginning transport calculation 4.0 days
Time step 1.0 days
Beginning reaction calculation 5.0 days
Estimated efficiency of chemistry without communication: 79.1338
Cells shifted between threads 1
Time rebalancing load 0.000195088
Beginning transport calculation 5.0 days
Time step 1.0 days
Beginning reaction calculation 6.0 days
Estimated efficiency of chemistry without communication: 89.909
Cells shifted between threads 1
Time rebalancing load 0.000183795
Beginning transport calculation 6.0 days
Time step 1.0 days
Beginning reaction calculation 7.0 days
Estimated efficiency of chemistry without communication: 80.1711
Cells shifted between threads 0
Time rebalancing load 3.6236e-05
Beginning transport calculation 7.0 days
Time step 1.0 days
Beginning reaction calculation 8.0 days
Estimated efficiency of chemistry without communication: 82.782
Cells shifted between threads 1
Time rebalancing load 0.000185584
Beginning transport calculation 8.0 days
Time step 1.0 days
Beginning reaction calculation 9.0 days
Estimated efficiency of chemistry without communication: 71.9762
Cells shifted between threads 1
Time rebalancing load 0.000216306
Beginning transport calculation 9.0 days
Time step 1.0 days
Beginning reaction calculation 10.0 days
Estimated efficiency of chemistry without communication: 73.4589
Cells shifted between threads 0
Time rebalancing load 5.9377e-05
Selected output sequence number: 1
Selected output user number: 1
Cell number 1
Calculated density: 0.99830524785028685
Volume: 0.19975836055633187
Components:
1 H2O: 55.4080
2 H: 0.0000
3 O: 0.0005
4 Charge: 0.0000
5 Ca: 0.0006
6 Cl: 0.0012
7 K: 0.0000
8 N: 0.0000
9 Na: 0.0000
Species:
1 Ca+2: 5.99E-04 -0.7995 -3.22E+00
2 CaOH+: 1.04E-09 -0.2031 -8.98E+00
3 Cl-: 1.20E-03 -0.2040 -2.92E+00
4 H+: 8.70E-08 -0.1907 -7.06E+00
5 H2: 0.00E+00 0.0018 -4.52E+01
6 H2O: 5.54E+01 0.0000 -1.53E-05
7 HCl: 3.38E-11 0.0077 -1.05E+01
8 K+: 2.94E-13 -0.2043 -1.25E+01
9 N2: 0.00E+00 0.0000 0.00E+00
10 NH3: 0.00E+00 0.0000 0.00E+00
11 NH4+: 0.00E+00 0.0000 0.00E+00
12 NO2-: 0.00E+00 0.0000 0.00E+00
13 NO3-: 0.00E+00 0.0000 0.00E+00
14 Na+: 2.52E-19 -0.2016 -1.86E+01
15 NaOH: 1.97E-36 0.0018 -3.57E+01
16 O2: 2.67E-04 0.0018 -3.57E+00
17 OH-: 8.60E-08 -0.2046 -7.06E+00
Selected output:
1 Na(mol/kgw: 0.0000
2 Cl(mol/kgw: 0.0012
3 K(mol/kgw): 0.0000
4 Ca(mol/kgw: 0.0006
5 Temperatur: 20.0000
6 Pressure: 2.0000
7 Hyd_K: 0.0000
Dump 0% 100%
Done Species_f90.====================================
Initial condition
Cell: 1
Moles P Phi
CH4(g) 0.010014 0.010000 0.999877
Ntg(g) 0.020029 0.020000 0.999974
Oxg(g) 0.030043 0.030000 0.999944
Cell: 2
Moles P Phi
CH4(g) 0.050081 0.050000 0.999524
Ntg(g) 0.070113 0.070000 0.999904
Oxg(g) 0.110178 0.110000 0.999785
Cell: 3
Moles P Phi
CH4(g) 0.130247 0.130000 0.998979
Ntg(g) 0.170324 0.170000 0.999801
Oxg(g) 0.190362 0.190000 0.999544
Initial condition times 2
Cell: 1
Moles P Phi
CH4(g) 0.020029 0.010000 0.999877
Ntg(g) 0.040058 0.020000 0.999974
Oxg(g) 0.060087 0.030000 0.999944
Cell: 2
Moles P Phi
CH4(g) 0.100162 0.050000 0.999524
Ntg(g) 0.140227 0.070000 0.999904
Oxg(g) 0.220357 0.110000 0.999785
Cell: 3
Moles P Phi
CH4(g) 0.260495 0.130000 0.998979
Ntg(g) 0.340647 0.170000 0.999801
Oxg(g) 0.380723 0.190000 0.999544
Estimated efficiency of chemistry without communication: 93.0401
Cells shifted between threads 1
Time rebalancing load 0.000155629
Remove some components
Cell: 1
Moles P Phi
CH4(g) -1.000000 -1.000000 -1.000000
Ntg(g) 0.040056 0.039997 0.999955
Oxg(g) 0.060081 0.059993 0.999906
Cell: 2
Moles P Phi
CH4(g) -1.000000 -1.000000 -1.000000
Ntg(g) -1.000000 -1.000000 -1.000000
Oxg(g) -1.000000 -1.000000 -1.000000
Cell: 3
Moles P Phi
CH4(g) 0.260463 0.259834 0.997961
Ntg(g) 0.340629 0.339807 0.999602
Oxg(g) 0.380685 0.379767 0.999090
Estimated efficiency of chemistry without communication: 68.4182
Cells shifted between threads 6
Time rebalancing load 0.000525219
Add components back
Cell: 1
Moles P Phi
CH4(g) 0.019998 0.019968 0.999755
Ntg(g) 0.040056 0.039996 0.999949
Oxg(g) 0.060081 0.059991 0.999888
Cell: 2
Moles P Phi
CH4(g) 0.009998 0.019965 0.999755
Ntg(g) 0.019998 0.039936 0.999949
Oxg(g) 0.029994 0.059898 0.999888
Cell: 3
Moles P Phi
CH4(g) 0.260463 0.259834 0.997961
Ntg(g) 0.340629 0.339807 0.999602
Oxg(g) 0.380685 0.379767 0.999090
Done Gas_f90.========================================
Done with tests.
<end of output>
Test time = 1.07 sec
----------------------------------------------------------
Test Passed.
"TestRM" end time: Jun 16 22:03 MDT
"TestRM" time elapsed: 00:00:01
----------------------------------------------------------
4/6 Testing: SimpleAdvect.py
4/6 Test: SimpleAdvect.py
Command: "/usr/bin/python3.10" "SimpleAdvect.py"
Directory: /home/charlton/source/repos/coupled/scharlton2/phreeqcrm-cmake_generate_export_header/_cmake/src/swig/python
"SimpleAdvect.py" start time: Jun 16 22:03 MDT
Output:
----------------------------------------------------------
Estimated efficiency of chemistry without communication: 92.9623
Cells shifted between threads 2
Time rebalancing load 0.00028858
Beginning transport calculation 0.0 days
Time step 1.0 days
Beginning reaction calculation 1.0 days
Estimated efficiency of chemistry without communication: 96.0415
Cells shifted between threads 0
Time rebalancing load 3.7678e-05
Beginning transport calculation 1.0 days
Time step 1.0 days
Beginning reaction calculation 2.0 days
Estimated efficiency of chemistry without communication: 77.8905
Cells shifted between threads 2
Time rebalancing load 0.000274802
Beginning transport calculation 2.0 days
Time step 1.0 days
Beginning reaction calculation 3.0 days
Estimated efficiency of chemistry without communication: 89.3549
Cells shifted between threads 2
Time rebalancing load 0.000262214
Beginning transport calculation 3.0 days
Time step 1.0 days
Beginning reaction calculation 4.0 days
Estimated efficiency of chemistry without communication: 70.659
Cells shifted between threads 2
Time rebalancing load 0.000272166
Beginning transport calculation 4.0 days
Time step 1.0 days
Beginning reaction calculation 5.0 days
Estimated efficiency of chemistry without communication: 63.059
Cells shifted between threads 2
Time rebalancing load 0.000280481
Beginning transport calculation 5.0 days
Time step 1.0 days
Beginning reaction calculation 6.0 days
Estimated efficiency of chemistry without communication: 89.976
Cells shifted between threads 2
Time rebalancing load 0.000263587
Beginning transport calculation 6.0 days
Time step 1.0 days
Beginning reaction calculation 7.0 days
Estimated efficiency of chemistry without communication: 77.1867
Cells shifted between threads 1
Time rebalancing load 0.000170313
Beginning transport calculation 7.0 days
Time step 1.0 days
Beginning reaction calculation 8.0 days
Estimated efficiency of chemistry without communication: 85.6232
Cells shifted between threads 1
Time rebalancing load 0.000163584
Beginning transport calculation 8.0 days
Time step 1.0 days
Beginning reaction calculation 9.0 days
Estimated efficiency of chemistry without communication: 86.2932
Cells shifted between threads 1
Time rebalancing load 0.000175751
Beginning transport calculation 9.0 days
Time step 1.0 days
Beginning reaction calculation 10.0 days
Estimated efficiency of chemistry without communication: 65.5928
Cells shifted between threads 1
Time rebalancing load 0.000205349
<end of output>
Test time = 0.26 sec
----------------------------------------------------------
Test Passed.
"SimpleAdvect.py" end time: Jun 16 22:03 MDT
"SimpleAdvect.py" time elapsed: 00:00:00
----------------------------------------------------------
5/6 Testing: WriteYAMLFile_py.py
5/6 Test: WriteYAMLFile_py.py
Command: "/usr/bin/python3.10" "WriteYAMLFile_py.py"
Directory: /home/charlton/source/repos/coupled/scharlton2/phreeqcrm-cmake_generate_export_header/_cmake/src/swig/python
"WriteYAMLFile_py.py" start time: Jun 16 22:03 MDT
Output:
----------------------------------------------------------
Done.
<end of output>
Test time = 0.18 sec
----------------------------------------------------------
Test Passed.
"WriteYAMLFile_py.py" end time: Jun 16 22:03 MDT
"WriteYAMLFile_py.py" time elapsed: 00:00:00
----------------------------------------------------------
6/6 Testing: AdvectBMI_py.py
6/6 Test: AdvectBMI_py.py
Command: "/usr/bin/python3.10" "AdvectBMI_py.py"
Directory: /home/charlton/source/repos/coupled/scharlton2/phreeqcrm-cmake_generate_export_header/_cmake/src/swig/python
"AdvectBMI_py.py" start time: Jun 16 22:03 MDT
Output:
----------------------------------------------------------
ERROR: Solution not found in GetTemperatures 0
ERROR: Solution not found in GetTemperatures 1
ERROR: Solution not found in GetTemperatures 2
ERROR: Solution not found in GetTemperatures 3
ERROR: Solution not found in GetTemperatures 4
ERROR: Solution not found in GetTemperatures 5
ERROR: Solution not found in GetTemperatures 6
ERROR: Solution not found in GetTemperatures 7
ERROR: Solution not found in GetTemperatures 8
ERROR: Solution not found in GetTemperatures 9
ERROR: PhreeqcRM failed.
ERROR: Solution not found for saturation.
ERROR: PhreeqcRM failed.
ERROR: PhreeqcRM::GetSaturationCalculated
python3.10: /home/charlton/source/repos/coupled/scharlton2/phreeqcrm-cmake_generate_export_header/src/BMIVariant.h:116: void BMIVariant::SetDoubleVector(const std::vector<double>&): Assertion `v.size() == DoubleVector.size()' failed.
<end of output>
Test time = 1.94 sec
----------------------------------------------------------
Test Failed.
"AdvectBMI_py.py" end time: Jun 16 22:03 MDT
"AdvectBMI_py.py" time elapsed: 00:00:01
----------------------------------------------------------
End testing: Jun 16 22:03 MDT
The text was updated successfully, but these errors were encountered:
https://github.com/usgs-coupled/phreeqcrm/actions/runs/5295972329
The text was updated successfully, but these errors were encountered: