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Describe the bug
Environment: Python 3.12.2 with miniconda, pip 25.0.1
When typing pip install pyradiomics in terminal, it turned to be like that:
(base) kozumi@YangPC:/mnt/e/Projects/dev/codespace/pyradiomics-fix-configparser$ python -V
Python 3.12.2
(base) kozumi@YangPC:/mnt/e/Projects/dev/codespace/pyradiomics-fix-configparser$ pip -V
pip 25.0.1 from /home/kozumi/miniconda3/lib/python3.12/site-packages/pip (python 3.12)
(base) kozumi@YangPC:/mnt/e/Projects/dev/codespace/pyradiomics-fix-configparser$ pip install pyradiomics
DEPRECATION: Loading egg at /home/kozumi/miniconda3/lib/python3.12/site-packages/pykwalify-1.8.0-py3.12.egg is deprecated. pip 25.1 will enforce this behaviour change. A possible replacement is to use pip for package installation. Discussion can be found at https://github.com/pypa/pip/issues/12330
Looking in indexes: https://mirrors.ustc.edu.cn/pypi/simple
Collecting pyradiomics
Using cached https://mirrors.ustc.edu.cn/pypi/packages/03/c1/20fc2c50ab1e3304da36d866042a1905a2b05a1431ece35448ab6b4578f2/pyradiomics-3.1.0.tar.gz (34.5 MB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Discarding https://mirrors.ustc.edu.cn/pypi/packages/03/c1/20fc2c50ab1e3304da36d866042a1905a2b05a1431ece35448ab6b4578f2/pyradiomics-3.1.0.tar.gz (from https://mirrors.ustc.edu.cn/pypi/simple/pyradiomics/): Requested pyradiomics from https://mirrors.ustc.edu.cn/pypi/packages/03/c1/20fc2c50ab1e3304da36d866042a1905a2b05a1431ece35448ab6b4578f2/pyradiomics-3.1.0.tar.gz has inconsistent version: expected '3.1.0', but metadata has '3.0.1a1'
Using cached https://mirrors.ustc.edu.cn/pypi/packages/1b/35/c7f7fb7affd302fd8107dcee6b6e7aaf3708b75ad69d5f9a3dfcadb73eaa/pyradiomics-3.0.1.tar.gz (34.5 MB)
Preparing metadata (setup.py) ... error
error: subprocess-exited-with-error
× python setup.py egg_info did not run successfully.
│ exit code: 1
╰─> [30 lines of output]
/tmp/pip-install-0ok43xo6/pyradiomics_6aace162de3b4468b8a2375bfb89205e/setup.py:9: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated.
!!
********************************************************************************
Please remove any references to `setuptools.command.test` in all supported versions of the affected package.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
********************************************************************************
!!
from setuptools.command.test import test as TestCommand
/tmp/pip-install-0ok43xo6/pyradiomics_6aace162de3b4468b8a2375bfb89205e/versioneer.py:418: SyntaxWarning: invalid escape sequence '\s'
LONG_VERSION_PY['git'] = '''
Traceback (most recent call last):
File "<string>", line 2, in <module>
File "<pip-setuptools-caller>", line 34, in <module>
File "/tmp/pip-install-0ok43xo6/pyradiomics_6aace162de3b4468b8a2375bfb89205e/setup.py", line 79, in <module>
version=versioneer.get_version(),
^^^^^^^^^^^^^^^^^^^^^^^^
File "/tmp/pip-install-0ok43xo6/pyradiomics_6aace162de3b4468b8a2375bfb89205e/versioneer.py", line 1476, in get_version
return get_versions()["version"]
^^^^^^^^^^^^^^
File "/tmp/pip-install-0ok43xo6/pyradiomics_6aace162de3b4468b8a2375bfb89205e/versioneer.py", line 1408, in get_versions
cfg = get_config_from_root(root)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/tmp/pip-install-0ok43xo6/pyradiomics_6aace162de3b4468b8a2375bfb89205e/versioneer.py", line 342, in get_config_from_root
parser = configparser.SafeConfigParser()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
AttributeError: module 'configparser' has no attribute 'SafeConfigParser'. Did you mean: 'RawConfigParser'?
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed
× Encountered error while generating package metadata.
╰─> See above for output.
note: This is an issue with the package mentioned above, not pip.
hint: See above for details.
According to the information provided by pip, it could be the configparser.SafeConfigParser() has been completely deprecated in Python 3.12+. Meanwhile, I found that version of versioneer.py is 0.17( latest version is 0.09). So, I tried simply updated the versioneer to latest version and it seemed that everything worked well.
PyRadiomics configuration
nothing
PyRadiomics log file
nothing
To Reproduce
Just run pip install pyradiomics in Python 3.12+ env.
Expected behavior
The pip worked well and the package is installed as normal.
Version (please complete the following information):
OS: Ubuntu 24.04
Python version: 3.12.2
PyRadiomics version: 3.1.0
Additional context
nothing
The text was updated successfully, but these errors were encountered:
Describe the bug
Environment: Python 3.12.2 with miniconda, pip 25.0.1
When typing
pip install pyradiomics
in terminal, it turned to be like that:According to the information provided by pip, it could be the configparser.SafeConfigParser() has been completely deprecated in Python 3.12+. Meanwhile, I found that version of
versioneer.py
is 0.17( latest version is 0.09). So, I tried simply updated the versioneer to latest version and it seemed that everything worked well.PyRadiomics configuration
nothing
PyRadiomics log file
nothing
To Reproduce
Just run
pip install pyradiomics
in Python 3.12+ env.Expected behavior
The pip worked well and the package is installed as normal.
Version (please complete the following information):
Additional context
nothing
The text was updated successfully, but these errors were encountered: