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app.py
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# Import files and remove spaces
def import_seq(inputfile):
with open(inputfile, "r") as f:
seq = f.read()
seq = seq.replace("/n", "")
seq = seq.replace("\n", "")
seq = seq.replace("/r", "")
return seq
def translate_dna(seq):
#Translation dictionary
table = {
'ATA':'I', 'ATC':'I', 'ATT':'I', 'ATG':'M',
'ACA':'T', 'ACC':'T', 'ACG':'T', 'ACT':'T',
'AAC':'N', 'AAT':'N', 'AAA':'K', 'AAG':'K',
'AGC':'S', 'AGT':'S', 'AGA':'R', 'AGG':'R',
'CTA':'L', 'CTC':'L', 'CTG':'L', 'CTT':'L',
'CCA':'P', 'CCC':'P', 'CCG':'P', 'CCT':'P',
'CAC':'H', 'CAT':'H', 'CAA':'Q', 'CAG':'Q',
'CGA':'R', 'CGC':'R', 'CGG':'R', 'CGT':'R',
'GTA':'V', 'GTC':'V', 'GTG':'V', 'GTT':'V',
'GCA':'A', 'GCC':'A', 'GCG':'A', 'GCT':'A',
'GAC':'D', 'GAT':'D', 'GAA':'E', 'GAG':'E',
'GGA':'G', 'GGC':'G', 'GGG':'G', 'GGT':'G',
'TCA':'S', 'TCC':'S', 'TCG':'S', 'TCT':'S',
'TTC':'F', 'TTT':'F', 'TTA':'L', 'TTG':'L',
'TAC':'Y', 'TAT':'Y', 'TAA':'_', 'TAG':'_',
'TGC':'C', 'TGT':'C', 'TGA':'_', 'TGG':'W',
}
protein = ""
#Check if is it possible to translate(can be divided by 3)
if len(seq) % 3 == 0:
for i in range(0, len(seq), 3):
codon = seq[i : i+3]
protein += table[codon]
else:
print("Invalid Sequence")
return protein
protein = import_seq("protein.txt")
dna = import_seq("dna.txt")
translated_dna = translate_dna(dna[20:935]) #The slice is based on where in the DNA is that specific protein sequence
#Compare already translated protein sequence with one this translator produced. Can be removed.
if translated_dna == protein:
print("Sucess")