pyproject.toml

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[project]
name = "napari-wsi"
version = "1.1.0"
description = "A plugin to read whole-slide images within napari."
readme = "README.md"
requires-python = ">=3.11"
license = "Apache-2.0"
license-files = [
    "LICENSE",
]
authors = [
    { name = "Philipp Plewa", email = "philipp.plewa@astrazeneca.com" },
]
maintainers = [
    { name = "Philipp Plewa", email = "philipp.plewa@astrazeneca.com" },
    { name = "Robert Schweizer", email = "robert.schweizer@astrazeneca.com" },
]
classifiers = [
    "Framework :: napari",
    "Intended Audience :: Developers",
    "Operating System :: OS Independent",
    "Topic :: Scientific/Engineering :: Image Processing",
]
dependencies = [
    "dask>=2025.1",
    "magicgui>=0.10",
    "numpy>=1.26",
    "pillow>=11.1",
    "universal-pathlib>=0.2",
    "zarr>=3.0",
]

[project.optional-dependencies]
openslide = [
    "openslide-python>=1.4",
]
rasterio = [
    "rasterio>=1.4",
]
wsidicom = [
    "colorspacious>=1.1.2",
    "pandas>=2.0",
    "shapely>=2.0",
    "wsidicom>=0.22",
]
all = [
    "napari-wsi[openslide,rasterio,wsidicom]"
]

[dependency-groups]
dev = [
    "invoke>=2.2.0",
    "mypy>=1.14",
    "napari[optional]>=0.5.6",
    "openslide-bin>=4.0",
    "pandas-stubs>=2.2",
    "pyqt5>=5.15",
    "pytest>=8.3",
    "pytest-cov>=6.0",
    "pytest-qt>=4.4",
    "ruff>=0.9",
    "scikit-image>=0.25",
]

[project.urls]
Repository = "https://github.com/AstraZeneca/napari-wsi"

[project.entry-points."napari.manifest"]
napari-wsi = "napari_wsi:napari.yaml"

[tool.mypy]
check_untyped_defs = true
warn_unused_ignores = true

[[tool.mypy.overrides]]
ignore_missing_imports = true
module = [
    "colorspacious.*",
    "napari.*",
    "rasterio.*",
    "shapely.*",
    "wsidicom.*",
]

[tool.ruff]
target-version = "py310"
line-length = 88
lint.select = [
    "E", "F", "W", #flake8
    "UP", # pyupgrade
    "I", # isort
    "BLE", # flake8-blind-exception
    "B", # flake8-bugbear
    "A", # flake8-builtins
    "C4", # flake8-comprehensions
    "ISC", # flake8-implicit-str-concat
    "G", # flake8-logging-format
    "PIE", # flake8-pie
    "SIM", # flake8-simplify
]
lint.ignore = [
    "B028", # for warnings
    "ISC001", # for ruff
]