PlasmidViewerBiofab.mxml

<?xml version="1.0" encoding="utf-8"?>
<mx:Application
	layout="horizontal" 
	width="100%" 
	height="100%" 
	styleName="plain" 
	verticalScrollPolicy="off"
	applicationComplete="applicationCompleteHandler(event)"
	xmlns:mx="http://www.adobe.com/2006/mxml"
	xmlns:ui="org.jbei.registry.view.ui.*">

  <mx:Script>
    <![CDATA[
    import mx.controls.Alert;
    import com.adobe.serialization.json.JSON;
    import mx.collections.ArrayCollection;
    import flash.external.*;

    import org.jbei.lib.*;    
    import org.jbei.bio.sequence.*;

    import org.jbei.bio.sequence.dna.Feature;
    import org.jbei.bio.sequence.common.StrandType;
    import org.jbei.bio.sequence.common.StrandedAnnotation

    [Bindable]
    protected var _seqProvider:SequenceProvider;


    protected function applicationCompleteHandler(event:Event):void {

      var parameters:Object = this.root.loaderInfo.parameters;
      var json:String = parameters.json as String;

      if(json != null) {

        var data:Object = JSON.decode(json);

        loadSequence(data);

      } else {
        loadSequence({sequence: "TAGC", features: []});
      }

      ExternalInterface.addCallback("select", onJavascriptSelectCall);

      ExternalInterface.addCallback("load_sequence", onJavascriptLoadSequence);

      if (ExternalInterface.available) {
        ExternalInterface.call("plasmid_viewer_ready");
      }


      ExternalInterface.call("console.log", "AAAAAAAAAAAAA");

      trace("plasmid viewer loaded");

    }

    public function onJavascriptSelectCall(from:int, to:int):void {
      pie.select(from, to);
    }

    public function onJavascriptLoadSequence(data:Object):void {
      if(data == null) {
        return;
      }
      loadSequence(data);
    }

    public function loadSequence(data:Object):void {

      if(data.features) {
        var features:ArrayCollection = new ArrayCollection();

        var feature:Feature;
        var i:int;
        for(i=0; i < data.features.length; i++) {
          if(!data.features[i].from || !data.features[i].to || (data.features[i].from < 0) || (data.features[i].to < 0)) {
            continue;
          }
          feature = new Feature(data.features[i].name || 'unnamed feature', data.features[i].from, data.features[i].to, data.features[i].type || 'unknown type');
          features.addItem(feature);
        }

      _seqProvider = new SequenceProvider(data.name || "Unnamed plasmid", true, DNATools.createDNA(data.sequence), features);
      
      }

      return;
    }

		]]>
  </mx:Script>
        

  <mx:Canvas 
    width="100%" 
    height="100%" 
    xmlns:components="org.jbei.components.*" 
    xmlns:mx="http://www.adobe.com/2006/mxml" 
    xmlns:ui="org.jbei.registry.view.ui.*" xmlns:print="org.jbei.registry.view.print.*">
	
    <components:Pie id="pie" showFeatures="true" showFeatureLabels="true" showORFs="false" showCutSites="false" width="100%" height="100%" sequenceProvider="{_seqProvider}" visible="true" includeInLayout="true" />
  </mx:Canvas>

</mx:Application>