From 33428ad505e4a2a94a5781ef0f11365dfb217943 Mon Sep 17 00:00:00 2001 From: Bence Bagi Date: Wed, 24 Jul 2024 15:21:50 +0100 Subject: [PATCH 1/3] Update spikeinterface and docker, add workflow to test with processing dependencies installed We ran into this issue when trying to run kilosort through docker: https://github.com/docker/docker-py/issues/3256 Hopefully updating docker-py to 7.1.0 fixes it: https://github.com/docker/docker-py/pull/3257#issuecomment-2173911243 --- .github/workflows/run_tests.yml | 1 - .github/workflows/test_with_processing.yml | 25 ++ poetry.lock | 481 +++++++++++---------- pyproject.toml | 4 +- 4 files changed, 269 insertions(+), 242 deletions(-) create mode 100644 .github/workflows/test_with_processing.yml diff --git a/.github/workflows/run_tests.yml b/.github/workflows/run_tests.yml index 0754beb..c666636 100644 --- a/.github/workflows/run_tests.yml +++ b/.github/workflows/run_tests.yml @@ -10,7 +10,6 @@ jobs: runs-on: ${{ matrix.os }} strategy: matrix: - #os: [ubuntu-latest, macos-latest, windows-latest] os: [ubuntu-latest, windows-latest] python-version: ["3.9", "3.10", "3.11", "3.12"] diff --git a/.github/workflows/test_with_processing.yml b/.github/workflows/test_with_processing.yml new file mode 100644 index 0000000..083752b --- /dev/null +++ b/.github/workflows/test_with_processing.yml @@ -0,0 +1,25 @@ +name: Tests + +on: push + +jobs: + tests: + runs-on: ${{ matrix.os }} + strategy: + matrix: + os: [ubuntu-latest] + python-version: ["3.9", "3.10", "3.11", "3.12"] + + steps: + - uses: actions/checkout@v4 + - name: Set up Python ${{ matrix.python-version }} + uses: actions/setup-python@v5 + with: + python-version: ${{ matrix.python-version }} + architecture: x64 + - name: Install poetry + run: pip install poetry + - name: Install project + run: poetry install --with processing + - name: Run pytest + run: poetry run pytest diff --git a/poetry.lock b/poetry.lock index 467e1e1..2320951 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. [[package]] name = "annotated-types" @@ -244,24 +244,25 @@ files = [ [[package]] name = "docker" -version = "6.1.3" +version = "7.1.0" description = "A Python library for the Docker Engine API." optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" files = [ - {file = "docker-6.1.3-py3-none-any.whl", hash = "sha256:aecd2277b8bf8e506e484f6ab7aec39abe0038e29fa4a6d3ba86c3fe01844ed9"}, - {file = "docker-6.1.3.tar.gz", hash = "sha256:aa6d17830045ba5ef0168d5eaa34d37beeb113948c413affe1d5991fc11f9a20"}, + {file = "docker-7.1.0-py3-none-any.whl", hash = "sha256:c96b93b7f0a746f9e77d325bcfb87422a3d8bd4f03136ae8a85b37f1898d5fc0"}, + {file = "docker-7.1.0.tar.gz", hash = "sha256:ad8c70e6e3f8926cb8a92619b832b4ea5299e2831c14284663184e200546fa6c"}, ] [package.dependencies] -packaging = ">=14.0" pywin32 = {version = ">=304", markers = "sys_platform == \"win32\""} requests = ">=2.26.0" urllib3 = ">=1.26.0" -websocket-client = ">=0.32.0" [package.extras] +dev = ["coverage (==7.2.7)", 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