diff --git a/generated/biocasia2024scdney.container b/generated/biocasia2024scdney.container
new file mode 100644
index 0000000..6f3f230
--- /dev/null
+++ b/generated/biocasia2024scdney.container
@@ -0,0 +1 @@
+ghcr.io/sydneybiox/scdneyspatial_biocasia2024:latest
diff --git a/generated/workshop-toolconf-values.yaml b/generated/workshop-toolconf-values.yaml
index 051c88f..b7f3025 100644
--- a/generated/workshop-toolconf-values.yaml
+++ b/generated/workshop-toolconf-values.yaml
@@ -11,6 +11,7 @@ configs:
+
@@ -134,6 +135,7 @@ configs:
+
diff --git a/generated/workshop-values-biocasia2024scdney.yaml b/generated/workshop-values-biocasia2024scdney.yaml
new file mode 100644
index 0000000..4f22d11
--- /dev/null
+++ b/generated/workshop-values-biocasia2024scdney.yaml
@@ -0,0 +1,35 @@
+ /galaxy/server/tools/interactive/biocworkshop_biocasia2024scdney.xml:
+ useSecret: false
+ applyToJob: true
+ applyToSetupJob: true
+ applyToWeb: true
+ applyToWorkflow: true
+ applyToNginx: true
+ tpl: false
+ content: |
+
+ with spicyWorkflow
+
+ ghcr.io/sydneybiox/scdneyspatial_biocasia2024:latest
+
+
+
+ 8787
+
+
+
+ true
+ $__history_id__
+ $__galaxy_url__
+ $__galaxy_url__
+
+
+ export TEMP=/tmp TMP=/tmp TMPDIR=/tmp TEMPDIR=/tmp; if [ -f '/home/rstudio/scdneySpatial_BiocAsia2024/vignettes/scdneySpatial.Rmd' ]; then echo '/home/rstudio/scdneySpatial_BiocAsia2024/vignettes/scdneySpatial.Rmd' > /tmp/startfile; else echo '/home/rstudio/vignettes/scdneySpatial.Rmd' > /tmp/startfile; fi ; echo "{ 'visual_markdown_editing_is_default': true }" > /etc/rstudio/rstudio-prefs.json ; echo "setwd('/home/rstudio'); setHook('rstudio.sessionInit', function(newSession) { if (newSession) rstudioapi::filesPaneNavigate('\$(dirname \$(cat /tmp/startfile))'); rstudioapi::navigateToFile('\$(cat /tmp/startfile)') }, action = 'append')" > /home/rstudio/.Rprofile; export TEMP=/tmp TMP=/tmp TMPDIR=/tmp TEMPDIR=/tmp; chown -R rstudio /home/rstudio/*; rm /tmp/startfile; chown -R rstudio /home/rstudio/.*; /init
+
+
+
+
+
+
+ This is an autogenerated Bioconductor workshop wrapper. See the source of this workshop or report issues at https://github.com/SydneyBioX/scdneySpatial_BiocAsia2024.
+
diff --git a/generated/workshop-values.yaml b/generated/workshop-values.yaml
index 925dc63..28adaa3 100644
--- a/generated/workshop-values.yaml
+++ b/generated/workshop-values.yaml
@@ -1,5 +1,5 @@
extraFileMappings:
- /galaxy/server/tools/interactive/biocworkshop_biocasia2024flames.xml:
+ /galaxy/server/tools/interactive/biocworkshop_biocasia2024scdney.xml:
useSecret: false
applyToJob: true
applyToSetupJob: true
@@ -8,13 +8,13 @@ extraFileMappings:
applyToNginx: true
tpl: false
content: |
-
- Igniting full-length isoform and mutation analysis of single-cell RNA-seq data with FLAMES
+
+ with spicyWorkflow
- ghcr.io/almahmoud/igniternaseq:latest
+ ghcr.io/sydneybiox/scdneyspatial_biocasia2024:latest
-
+
8787
@@ -25,12 +25,12 @@ extraFileMappings:
$__galaxy_url__
- export TEMP=/tmp TMP=/tmp TMPDIR=/tmp TEMPDIR=/tmp; if [ -f '/home/rstudio/IgniteRNAseq/vignettes/FLAMESWorkflow.Rmd' ]; then echo '/home/rstudio/IgniteRNAseq/vignettes/FLAMESWorkflow.Rmd' > /tmp/startfile; else echo '/home/rstudio/vignettes/FLAMESWorkflow.Rmd' > /tmp/startfile; fi ; echo "{ 'visual_markdown_editing_is_default': true }" > /etc/rstudio/rstudio-prefs.json ; echo "setwd('/home/rstudio'); setHook('rstudio.sessionInit', function(newSession) { if (newSession) rstudioapi::filesPaneNavigate('\$(dirname \$(cat /tmp/startfile))'); rstudioapi::navigateToFile('\$(cat /tmp/startfile)') }, action = 'append')" > /home/rstudio/.Rprofile; export TEMP=/tmp TMP=/tmp TMPDIR=/tmp TEMPDIR=/tmp; chown -R rstudio /home/rstudio/*; rm /tmp/startfile; chown -R rstudio /home/rstudio/.*; /init
+ export TEMP=/tmp TMP=/tmp TMPDIR=/tmp TEMPDIR=/tmp; if [ -f '/home/rstudio/scdneySpatial_BiocAsia2024/vignettes/scdneySpatial.Rmd' ]; then echo '/home/rstudio/scdneySpatial_BiocAsia2024/vignettes/scdneySpatial.Rmd' > /tmp/startfile; else echo '/home/rstudio/vignettes/scdneySpatial.Rmd' > /tmp/startfile; fi ; echo "{ 'visual_markdown_editing_is_default': true }" > /etc/rstudio/rstudio-prefs.json ; echo "setwd('/home/rstudio'); setHook('rstudio.sessionInit', function(newSession) { if (newSession) rstudioapi::filesPaneNavigate('\$(dirname \$(cat /tmp/startfile))'); rstudioapi::navigateToFile('\$(cat /tmp/startfile)') }, action = 'append')" > /home/rstudio/.Rprofile; export TEMP=/tmp TMP=/tmp TMPDIR=/tmp TEMPDIR=/tmp; chown -R rstudio /home/rstudio/*; rm /tmp/startfile; chown -R rstudio /home/rstudio/.*; /init
- This is an autogenerated Bioconductor workshop wrapper. See the source of this workshop or report issues at https://github.com/ChangqingW/IgniteRNAseq.
+ This is an autogenerated Bioconductor workshop wrapper. See the source of this workshop or report issues at https://github.com/SydneyBioX/scdneySpatial_BiocAsia2024.