From e84a24af0e56ff541028778c84309e050aa2f0aa Mon Sep 17 00:00:00 2001 From: Manuel Rueda Date: Tue, 11 Feb 2025 16:00:51 +0100 Subject: [PATCH] Update README --- Changes | 2 +- README.md | 12 +++++++++++- VERSION | 2 +- bin/pheno-ranker | 10 ++++++++++ lib/Pheno/Ranker.pm | 2 +- 5 files changed, 24 insertions(+), 4 deletions(-) diff --git a/Changes b/Changes index 4d8c654..e990bce 100644 --- a/Changes +++ b/Changes @@ -1,6 +1,6 @@ Revision history for Perl distribution Pheno-Ranker -1.04 2025-0X-0X:00:00Z (Manuel Rueda ) +1.04 2025-02-11:00:00Z (Manuel Rueda ) - Set .Inline at user's home dir diff --git a/README.md b/README.md index ba2a2e2..8b3bb1e 100644 --- a/README.md +++ b/README.md @@ -9,7 +9,7 @@ [![Coverage Status](https://coveralls.io/repos/github/CNAG-Biomedical-Informatics/pheno-ranker/badge.svg?branch=main)](https://coveralls.io/github/CNAG-Biomedical-Informatics/pheno-ranker?branch=main) [![CPAN Publish](https://github.com/cnag-biomedical-informatics/pheno-ranker/actions/workflows/cpan-publish.yml/badge.svg)](https://github.com/cnag-biomedical-informatics/pheno-ranker/actions/workflows/cpan-publish.yml) [![Kwalitee Score](https://cpants.cpanauthors.org/dist/Pheno-Ranker.svg)](https://cpants.cpanauthors.org/dist/Pheno-Ranker) -![version](https://img.shields.io/badge/version-1.03-28a745) +![version](https://img.shields.io/badge/version-1.04-28a745) [![Docker Build](https://github.com/cnag-biomedical-informatics/pheno-ranker/actions/workflows/docker-build.yml/badge.svg)](https://github.com/cnag-biomedical-informatics/pheno-ranker/actions/workflows/docker-build.yml) [![Docker Pulls](https://badgen.net/docker/pulls/manuelrueda/pheno-ranker?icon=docker&label=pulls)](https://hub.docker.com/r/manuelrueda/pheno-ranker/) [![Docker Image Size](https://badgen.net/docker/size/manuelrueda/pheno-ranker?icon=docker&label=image%20size)](https://hub.docker.com/r/manuelrueda/pheno-ranker/) @@ -135,9 +135,15 @@ Please follow [these instructions](https://cnag-biomedical-informatics.github.io ### Method 3: From GitHub +To clone the repository for the first time: + git clone https://github.com/cnag-biomedical-informatics/pheno-ranker.git cd pheno-ranker +To update an existing clone, navigate to the repository folder and run: + + git pull + Install system level dependencies: sudo apt-get install cpanminus libperl-dev @@ -159,6 +165,10 @@ To ensure Perl recognizes your local modules every time you start a new terminal echo 'eval $(perl -I ~/perl5/lib/perl5/ -Mlocal::lib)' >> ~/.bashrc +To **update** to the newest version (showing commands for Option 2): + + cpanm Pheno::Ranker + _Optional:_ If you want to use `utils/barcode` or `utils/bff_pxf_plot`: sudo apt-get install python3-pip libzbar0 diff --git a/VERSION b/VERSION index f1ad6a7..11a84ad 100644 --- a/VERSION +++ b/VERSION @@ -1 +1 @@ -1.03 +1.04 diff --git a/bin/pheno-ranker b/bin/pheno-ranker index 0892fe1..e59d674 100755 --- a/bin/pheno-ranker +++ b/bin/pheno-ranker @@ -367,9 +367,15 @@ Please follow L> ~/.bashrc +To B to the newest version (showing commands for Option 2): + + cpanm Pheno::Ranker + I If you want to use C or C: sudo apt-get install python3-pip libzbar0 diff --git a/lib/Pheno/Ranker.pm b/lib/Pheno/Ranker.pm index 799e442..d40d904 100755 --- a/lib/Pheno/Ranker.pm +++ b/lib/Pheno/Ranker.pm @@ -28,7 +28,7 @@ $SIG{__DIE__} = sub { die BOLD RED "Error: ", @_ }; # Global variables: $Data::Dumper::Sortkeys = 1; -our $VERSION = '1.03'; +our $VERSION = '1.04'; our $share_dir = dist_dir('Pheno-Ranker'); # Set development mode