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Depth for PCR based amplicons(overlap) #186

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tiehan opened this issue Apr 23, 2017 · 0 comments
Open

Depth for PCR based amplicons(overlap) #186

tiehan opened this issue Apr 23, 2017 · 0 comments

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@tiehan
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tiehan commented Apr 23, 2017

I have many overlap amplicons.
Through the bam file , I can get the pair reads start and end . The pair reads' start and end is completely match to one of amplicons' start and end . I want get every amplicon's real depth to evaluate every amplicon's performance.
Can chanjo calculate it?
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@tiehan