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Unaligned single-end CRAM output #54

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vinjana opened this issue Feb 23, 2024 · 0 comments

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vinjana commented Feb 23, 2024

Currently, the workflow only produced single-read FASTQs.

nf-core uses interleaved unaligned CRAM files.

Support unaligned CRAM as output compression for single-read sequences (r1, r2, etc.).

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