.gitignore

*.log
*.log.*
application.properties
ncbi.xml.gz
webapps/legacyjson/legacy_endpoints.json

# Docker compose files
docker-compose.override.yml
docker-compose.debug.override.yml

bin/
target/
export/

# Scripts
docker-env.sh
env.sh
docker-agents.sh
run_env.sh
docker-clean.sh
docker-restart.sh
docker-servers.sh
not-founds.txt

*.backup
.ideavimrc
test-features
run_test.py
!/models/legacyjson/src/test/resources/testLegacySample.json

jsonExport.json
xmlExport.xml
docker-integration.local.sh

*.iml
**/.idea
### JetBrains template
# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio and WebStorm
# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839

# User-specific stuff
.idea/**/workspace.xml
.idea/**/tasks.xml
.idea/**/dictionaries
.idea/**/shelf

# Sensitive or high-churn files
.idea/**/dataSources/
.idea/**/dataSources.ids
.idea/**/dataSources.local.xml
.idea/**/sqlDataSources.xml
.idea/**/dynamic.xml
.idea/**/uiDesigner.xml

# Gradle
.idea/**/gradle.xml
.idea/**/libraries

# CMake
cmake-build-debug/
cmake-build-release/

# Mongo Explorer plugin
.idea/**/mongoSettings.xml

# File-based project format
*.iws

# IntelliJ
out/

# mpeltonen/sbt-idea plugin
.idea_modules/

# JIRA plugin
atlassian-ide-plugin.xml

# Cursive Clojure plugin
.idea/replstate.xml

# Crashlytics plugin (for Android Studio and IntelliJ)
com_crashlytics_export_strings.xml
crashlytics.properties
crashlytics-build.properties
fabric.properties

# Editor-based Rest Client
.idea/httpRequests
/notes/
/notes/BSD-1282.md
/notes/setup-notes.md
/livelist.txt
/livelist-prod.txt
.gradle/
pipelines/curation/curations.csv
/pipelines/ena/export.json
/pipelines/ena/export-random-50.json

# Javascript
.vscode
.nyc_output
**/coverage
create_new_facets_and_filters.md
*.versionsBackup
/pipelines/ncbi/ncbi-export-with-dbGap-sample.json
/pipelines/ncbi/ncbi-export-no-dbGap-sample.json
/pipelines/ncbi/ncbi-import.json
/ncbi.*.gz
/ncbi_*.*.gz

#docker
data
docker