GTDB R207

GTDB R207

• Assembly summary files downloaded on the 19th of July 2021
• Assembly summary files downloaded on the 19th of July 2021
• Remove 631157 from 'large multi-isolate project'
• Running prodigal ( GCA_017853535 seems to have an memory issue but did generate proper file)
• LPSN has been downloaded on the 23rd/24th of August 2021

GCA_019263805.1 do not have NCBI taxonomy, it has to be added manually

GCA_905171735.1: NCBI (d__Archaea) and GTDB (d__Bacteria) domains disagree in domain report (Bac = 68.33%; Ar = 13.93%).  
GCA_905171755.1: NCBI (d__Archaea) and GTDB (d__Bacteria) domains disagree in domain report (Bac = 88.33%; Ar = 15.57%).    
GCA_017610335.1: NCBI (d__Bacteria) and GTDB (d__Archaea) domains disagree in domain report (Bac = 17.5%; Ar = 78.69%).    
GCA_016866615.1: NCBI (d__Archaea) and GTDB (d__Bacteria) domains disagree in domain report (Bac = 60.0%; Ar = 11.48%).    
GCA_017610325.1: NCBI (d__Bacteria) and GTDB (d__Archaea) domains disagree in domain report (Bac = 17.5%; Ar = 76.23%).    
GCA_015661575.1: NCBI (d__Bacteria) and GTDB (d__Archaea) domains disagree in domain report (Bac = 27.5%; Ar = 63.93%).    
GCA_905171745.1: NCBI (d__Archaea) and GTDB (d__Bacteria) domains disagree in domain report (Bac = 91.67%; Ar = 17.21%).     
GCA_905171705.1: NCBI (d__Archaea) and GTDB (d__Bacteria) domains disagree in domain report (Bac = 77.5%; Ar = 13.11%).     
GCA_017610485.1: NCBI (d__Bacteria) and GTDB (d__Archaea) domains disagree in domain report (Bac = 16.67%; Ar = 73.77%).    
GCA_017610425.1: NCBI (d__Bacteria) and GTDB (d__Archaea) domains disagree in domain report (Bac = 15.0%; Ar = 65.57%).    
GCA_017610445.1: NCBI (d__Bacteria) and GTDB (d__Archaea) domains disagree in domain report (Bac = 13.33%; Ar = 59.02%).

LPT should be migrated to the new LTP data (https://imedea.uib-csic.es/mmg/ltp/) for next iteration