{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":615462303,"defaultBranch":"main","name":"AoU_WDL","ownerLogin":"EichlerLab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-03-17T18:50:01.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/5778214?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1704397188.0","currentOid":""},"activityList":{"items":[{"before":"7e1b6ae87e51709fe0d840f1e7b9b8d62a773bbc","after":"68c291e67a45530a90ebc3759602bcd10a2142df","ref":"refs/heads/main","pushedAt":"2024-08-21T20:43:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jwertz01","name":"Julie Wertz","path":"/jwertz01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9356758?s=80&v=4"},"commit":{"message":"Minor syntax fix","shortMessageHtmlLink":"Minor syntax fix"}},{"before":"51758d39c7231ec9fecc2717774f4622fb94e799","after":"7e1b6ae87e51709fe0d840f1e7b9b8d62a773bbc","ref":"refs/heads/main","pushedAt":"2024-02-09T03:15:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"wharvey31","name":null,"path":"/wharvey31","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31748245?s=80&v=4"},"commit":{"message":"Inter scripts","shortMessageHtmlLink":"Inter scripts"}},{"before":"4e80d245a0cc6a07149207b9ae88a6836d102e03","after":"51758d39c7231ec9fecc2717774f4622fb94e799","ref":"refs/heads/main","pushedAt":"2024-02-08T15:54:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"wharvey31","name":null,"path":"/wharvey31","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31748245?s=80&v=4"},"commit":{"message":"Added argparse","shortMessageHtmlLink":"Added argparse"}},{"before":"e73cce96b42da00041a3b2cc3879d1b9f51a43af","after":"4e80d245a0cc6a07149207b9ae88a6836d102e03","ref":"refs/heads/main","pushedAt":"2024-02-07T20:05:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"wharvey31","name":null,"path":"/wharvey31","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31748245?s=80&v=4"},"commit":{"message":"Added svpop","shortMessageHtmlLink":"Added svpop"}},{"before":"f6134a16dd39495cd467246ada81b7411b530728","after":"e73cce96b42da00041a3b2cc3879d1b9f51a43af","ref":"refs/heads/main","pushedAt":"2024-02-06T21:38:56.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"wharvey31","name":null,"path":"/wharvey31","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31748245?s=80&v=4"},"commit":{"message":"Merge branch 'main' of github.com:EichlerLab/AoU_WDL","shortMessageHtmlLink":"Merge branch 'main' of github.com:EichlerLab/AoU_WDL"}},{"before":"f1270a5cc8e642cd1730f2a080340e1090088571","after":"f6134a16dd39495cd467246ada81b7411b530728","ref":"refs/heads/main","pushedAt":"2024-01-19T22:02:29.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"jwertz01","name":"Julie Wertz","path":"/jwertz01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9356758?s=80&v=4"},"commit":{"message":"Merge pull request #4 from EichlerLab/contigs-in-range\n\nAllow pos/ end to match within a range","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2066241967\" data-permission-text=\"Title is private\" data-url=\"https://github.com/EichlerLab/AoU_WDL/issues/4\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/EichlerLab/AoU_WDL/pull/4/hovercard\" href=\"https://github.com/EichlerLab/AoU_WDL/pull/4\">#4</a> from EichlerLab/contigs-in-range"}},{"before":"269c23cb9667531dcf55a615cad5ba2287f5c176","after":"185e44d4652ea35fd2ede26697c453d8b1a7ec6a","ref":"refs/heads/contigs-in-range","pushedAt":"2024-01-19T22:01:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jwertz01","name":"Julie Wertz","path":"/jwertz01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9356758?s=80&v=4"},"commit":{"message":"Finished/ tested branch, change flanking length to wrt reference","shortMessageHtmlLink":"Finished/ tested branch, change flanking length to wrt reference"}},{"before":"f1270a5cc8e642cd1730f2a080340e1090088571","after":"269c23cb9667531dcf55a615cad5ba2287f5c176","ref":"refs/heads/contigs-in-range","pushedAt":"2024-01-04T19:44:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jwertz01","name":"Julie Wertz","path":"/jwertz01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9356758?s=80&v=4"},"commit":{"message":"Allow contig pos/ end to match within a range of ref.\n\nInstead of requiring exact match","shortMessageHtmlLink":"Allow contig pos/ end to match within a range of ref."}},{"before":null,"after":"f1270a5cc8e642cd1730f2a080340e1090088571","ref":"refs/heads/contigs-in-range","pushedAt":"2024-01-04T19:39:48.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jwertz01","name":"Julie Wertz","path":"/jwertz01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9356758?s=80&v=4"},"commit":{"message":"Merge pull request #3 from EichlerLab/align_reads_to_contigs\n\nAlign reads to contigs workflow","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2029603630\" data-permission-text=\"Title is private\" data-url=\"https://github.com/EichlerLab/AoU_WDL/issues/3\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/EichlerLab/AoU_WDL/pull/3/hovercard\" href=\"https://github.com/EichlerLab/AoU_WDL/pull/3\">#3</a> from EichlerLab/align_reads_to_contigs"}},{"before":"4c930251365a237d8465faf0e959a917408142f9","after":"f1270a5cc8e642cd1730f2a080340e1090088571","ref":"refs/heads/main","pushedAt":"2023-12-15T17:42:40.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"wharvey31","name":null,"path":"/wharvey31","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31748245?s=80&v=4"},"commit":{"message":"Merge pull request #3 from EichlerLab/align_reads_to_contigs\n\nAlign reads to contigs workflow","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2029603630\" data-permission-text=\"Title is private\" data-url=\"https://github.com/EichlerLab/AoU_WDL/issues/3\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/EichlerLab/AoU_WDL/pull/3/hovercard\" href=\"https://github.com/EichlerLab/AoU_WDL/pull/3\">#3</a> from EichlerLab/align_reads_to_contigs"}},{"before":"46dcc6ab3317ce2b977f59e390cd027e0cfbdc1d","after":"9e78a08a32a16e23562659a3cd224953b1871247","ref":"refs/heads/align_reads_to_contigs","pushedAt":"2023-12-14T17:59:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jwertz01","name":"Julie Wertz","path":"/jwertz01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9356758?s=80&v=4"},"commit":{"message":"Concatenate both haplotypes first, output cram instead of bam, more memory and disk required","shortMessageHtmlLink":"Concatenate both haplotypes first, output cram instead of bam, more m…"}},{"before":"f15c68dd3179c2caa2e89a0ab5bd24fe2851c81c","after":null,"ref":"refs/heads/pav_to_contig","pushedAt":"2023-12-07T22:43:01.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jwertz01","name":"Julie Wertz","path":"/jwertz01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9356758?s=80&v=4"}},{"before":"8c4d986e2cb7a456ae28a9a0375a50600782b875","after":"4c930251365a237d8465faf0e959a917408142f9","ref":"refs/heads/main","pushedAt":"2023-12-07T22:42:47.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"jwertz01","name":"Julie Wertz","path":"/jwertz01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9356758?s=80&v=4"},"commit":{"message":"Merge pull request #2 from EichlerLab/pav_to_contig\n\nBam to contig","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2029586321\" data-permission-text=\"Title is private\" data-url=\"https://github.com/EichlerLab/AoU_WDL/issues/2\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/EichlerLab/AoU_WDL/pull/2/hovercard\" href=\"https://github.com/EichlerLab/AoU_WDL/pull/2\">#2</a> from EichlerLab/pav_to_contig"}},{"before":null,"after":"46dcc6ab3317ce2b977f59e390cd027e0cfbdc1d","ref":"refs/heads/align_reads_to_contigs","pushedAt":"2023-12-07T00:10:02.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jwertz01","name":"Julie Wertz","path":"/jwertz01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9356758?s=80&v=4"},"commit":{"message":"Align reads fastq for each sample to hap1 and hap2 haplotigs","shortMessageHtmlLink":"Align reads fastq for each sample to hap1 and hap2 haplotigs"}},{"before":"149a7f0e27e8158d3076d236e8d58c1028b87062","after":null,"ref":"refs/heads/align_reads_to_contig","pushedAt":"2023-12-07T00:07:20.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jwertz01","name":"Julie Wertz","path":"/jwertz01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9356758?s=80&v=4"}},{"before":null,"after":"149a7f0e27e8158d3076d236e8d58c1028b87062","ref":"refs/heads/align_reads_to_contig","pushedAt":"2023-12-07T00:05:20.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jwertz01","name":"Julie Wertz","path":"/jwertz01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9356758?s=80&v=4"},"commit":{"message":"Workflow to align reads fastq for each sample to hap1 and hap2 haplotigs using minimap2","shortMessageHtmlLink":"Workflow to align reads fastq for each sample to hap1 and hap2 haplot…"}},{"before":"d93e4d14bcad39e49b89ca1eaeb61e1fd269570e","after":"f15c68dd3179c2caa2e89a0ab5bd24fe2851c81c","ref":"refs/heads/pav_to_contig","pushedAt":"2023-12-06T23:40:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jwertz01","name":"Julie Wertz","path":"/jwertz01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9356758?s=80&v=4"},"commit":{"message":"Latest workflow that uses bam as input rather than PAV tig_region","shortMessageHtmlLink":"Latest workflow that uses bam as input rather than PAV tig_region"}},{"before":"428a1767af4cd8274408617ac40d75014c5d7e00","after":"8c4d986e2cb7a456ae28a9a0375a50600782b875","ref":"refs/heads/main","pushedAt":"2023-12-05T00:46:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"wharvey31","name":null,"path":"/wharvey31","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31748245?s=80&v=4"},"commit":{"message":"Switch to polars","shortMessageHtmlLink":"Switch to polars"}},{"before":"7112339097cb60cf580eecb6cb8cd69f2ca41682","after":"428a1767af4cd8274408617ac40d75014c5d7e00","ref":"refs/heads/main","pushedAt":"2023-11-29T00:33:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"wharvey31","name":null,"path":"/wharvey31","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31748245?s=80&v=4"},"commit":{"message":"No merge","shortMessageHtmlLink":"No merge"}},{"before":"7a83bdc52bdd3da3b16ffb11cd543075ecbfd8da","after":"7112339097cb60cf580eecb6cb8cd69f2ca41682","ref":"refs/heads/main","pushedAt":"2023-11-28T16:56:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"wharvey31","name":null,"path":"/wharvey31","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31748245?s=80&v=4"},"commit":{"message":"Adjusted sep","shortMessageHtmlLink":"Adjusted sep"}},{"before":"417025a4bb75dd9dc6a528b0e7906c44b3c5d5c9","after":"7a83bdc52bdd3da3b16ffb11cd543075ecbfd8da","ref":"refs/heads/main","pushedAt":"2023-11-28T01:11:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"wharvey31","name":null,"path":"/wharvey31","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31748245?s=80&v=4"},"commit":{"message":"Adjusted name","shortMessageHtmlLink":"Adjusted name"}},{"before":"6a7597a178dcac5d8f6496c075c586e695b17b2c","after":"417025a4bb75dd9dc6a528b0e7906c44b3c5d5c9","ref":"refs/heads/main","pushedAt":"2023-11-28T01:11:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"wharvey31","name":null,"path":"/wharvey31","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31748245?s=80&v=4"},"commit":{"message":"Adjusted order","shortMessageHtmlLink":"Adjusted order"}},{"before":"aaaec2808ffe83297c90bb1c3abeb2c63487d1ef","after":"6a7597a178dcac5d8f6496c075c586e695b17b2c","ref":"refs/heads/main","pushedAt":"2023-11-28T01:07:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"wharvey31","name":null,"path":"/wharvey31","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31748245?s=80&v=4"},"commit":{"message":"Add plot func","shortMessageHtmlLink":"Add plot func"}},{"before":"293a8e33247a8350dc7f79b7b9f5a6492daada71","after":"aaaec2808ffe83297c90bb1c3abeb2c63487d1ef","ref":"refs/heads/main","pushedAt":"2023-11-21T23:01:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"wharvey31","name":null,"path":"/wharvey31","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31748245?s=80&v=4"},"commit":{"message":"bug","shortMessageHtmlLink":"bug"}},{"before":"cc2a92437252ca7496b6ef323416260373964619","after":"293a8e33247a8350dc7f79b7b9f5a6492daada71","ref":"refs/heads/main","pushedAt":"2023-11-21T22:59:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"wharvey31","name":null,"path":"/wharvey31","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31748245?s=80&v=4"},"commit":{"message":"AllMatrix mem","shortMessageHtmlLink":"AllMatrix mem"}},{"before":null,"after":"d93e4d14bcad39e49b89ca1eaeb61e1fd269570e","ref":"refs/heads/pav_to_contig","pushedAt":"2023-11-06T22:59:06.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jwertz01","name":"Julie Wertz","path":"/jwertz01","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9356758?s=80&v=4"},"commit":{"message":"Full pipeline to extract original haplotigs in a reference region of interest mapped using PAV TIG_REGION","shortMessageHtmlLink":"Full pipeline to extract original haplotigs in a reference region of …"}},{"before":"bb72fb1ddef1cc7ff54bedf6e5c54f83158245ef","after":"cc2a92437252ca7496b6ef323416260373964619","ref":"refs/heads/main","pushedAt":"2023-10-24T00:47:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"wharvey31","name":null,"path":"/wharvey31","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31748245?s=80&v=4"},"commit":{"message":"mtx out","shortMessageHtmlLink":"mtx out"}},{"before":"410981a3007957c6604db73d5873c313cd2c0cd3","after":"bb72fb1ddef1cc7ff54bedf6e5c54f83158245ef","ref":"refs/heads/main","pushedAt":"2023-10-23T23:39:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"wharvey31","name":null,"path":"/wharvey31","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31748245?s=80&v=4"},"commit":{"message":"cut","shortMessageHtmlLink":"cut"}},{"before":"b68028053bf094d4d1ec1b67b323b069ae8aba4f","after":"410981a3007957c6604db73d5873c313cd2c0cd3","ref":"refs/heads/main","pushedAt":"2023-10-23T21:57:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"wharvey31","name":null,"path":"/wharvey31","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31748245?s=80&v=4"},"commit":{"message":"float comparison","shortMessageHtmlLink":"float comparison"}},{"before":"e07ff6ff8fa92e54fcd8ec542f6b25f4e218d208","after":"b68028053bf094d4d1ec1b67b323b069ae8aba4f","ref":"refs/heads/main","pushedAt":"2023-10-23T21:15:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"wharvey31","name":null,"path":"/wharvey31","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31748245?s=80&v=4"},"commit":{"message":"int comparison","shortMessageHtmlLink":"int comparison"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOC0yMVQyMDo0Mzo1Ny4wMDAwMDBazwAAAASgnyDs","endCursor":"Y3Vyc29yOnYyOpK7MjAyMy0xMC0yM1QyMToxNTo0MC4wMDAwMDBazwAAAAOd9xAo"}},"title":"Activity · EichlerLab/AoU_WDL"}