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database.defaults.properties
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# -----------------------------------------------------------------------------
#
# Configure which tests should be run
#
# Add groups of tests here
groups =
# Exclude groups of tests here
less =
# Add individual tests here
include_tests =
# Exclude individual tests here
notest =
# -----------------------------------------------------------------------------
# Database that should be tested (e.g.: ensembl_compara_bacteria_5_58). Any
# configured tests will be run on this database.
#
test_databases =
#
# Configure the database details necessary to connect to the databases
# specified in "output.databases"
#
host = mysql-gti-dev-1
port = 4484
user = ensro
password =
driver = org.gjt.mm.mysql.Driver
host1 = mysql-ens-sta-1
port1 = 4519
user1 = ensro
driver1 = org.gjt.mm.mysql.Driver
host2 = mysql-ens-sta-1
port2 = 4519
user2 = ensro
driver2 = org.gjt.mm.mysql.Driver
#host3 = mysql-ens-sta-4
#port3 = 4494
#user3 = ensro
#driver3 = org.gjt.mm.mysql.Driver
#
# Some tests require a second database. Configure the details of the database
# server on which this should be found here.
#
# Note that most tests that require a secondary database will not work for
# Ensembl Genomes.
#
secondary.host = mysql-ens-mirror-1
secondary.port = 4240
secondary.user = ensro
secondary.password =
secondary.driver = org.gjt.mm.mysql.Driver
secondary.database =
# -----------------------------------------------------------------------------
#
# Alternatively reporterType can be set to "Text".
reportertype = Text
# Set the level of verbosity for the output
outputlevel = Problem
# We need meaningful errormessages for misspelled options!
# Other option is Discoverybased
testregistrytype = ConfigurationBased
# -----------------------------------------------------------------------------
# The output.* properties are used when database results are written to a
# database.
output.driver = org.gjt.mm.mysql.Driver
# Connection details for the database server on which the database for the
# results of the healthchecks will be written to. This will not work with
# the defaults here, the user has to override these settings or at least
# provide a password.
#
output.host = mysql-ens-general-prod-1
output.port = 3306
output.user = ensro
output.password =
# The name of the database where the results of the healthchecks are written
# to
#
output.database = healthchecks_default
# If output.database does not exist, it will be created automatically. This
# file should have the SQL commands to create the schema. Please remember
# that hashes (#) are not allowed to start comments in SQL. Use two dashes
# "--" at the beginning of a line instead.
#
# If the configurable testrunner can't find this file from the current
# working directory, it will search for it on the classpath.
#
output.schemafile = table.sql
# Gets written into the database
release = 90
# -----------------------------------------------------------------------------
schema.file=perlcode/ensembl/sql/table.sql
funcgen_schema.file=perlcode/ensembl-funcgen/sql/table.sql
variation_schema.file=perlcode/ensembl-variation/sql/table.sql
# Master schema - used for the
#
# - org.ensembl.healthcheck.testcase.generic.CompareSchema
# - org.ensembl.healthcheck.testcase.variation.CompareVariationSchema and the
# - org.ensembl.healthcheck.testcase.funcgen.CompareFuncgenSchema
#
# healthchecks. The healthchecks use the database type to filter out the
# databases to which this comparison is applicable. The database type is
# ultimately determined by the regular expressions in
# org.ensembl.healthcheck.DatabaseRegistryEntry. Then they are compared
# to one of these databases, depending on which healthcheck is run:
#
master.schema = master_schema_90
master.variation_schema = master_schema_variation_90
master.funcgen_schema = master_schema_funcgen_90
#
# The master.* settings are ignored if none of the Compare*Schema are run.
#
repair =