CLI options should override config file

[nolanwrightdev]

I would suggest having a default config file name/path that is always loaded. The CLI may override the default name/path and provide further options. Any options provided at the command line should override any defaults or those loaded from the config file.

Right now using the CLI is rather unwieldy. If for example some options are dynamic, it is not possible to set them in the config file. Using a config file or the CLI options are mutually exclusive.