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Additional algorithm 48 (out of context).html
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<!-- ############################################################################################################################## -->
<!-- # John Wiley & Sons, Inc. # -->
<!-- # # -->
<!-- # Book: Algorithms in Bioinformatics: Theory and Implementation # -->
<!-- # Author: Dr. Paul A. Gagniuc # -->
<!-- # # -->
<!-- # Institution: # -->
<!-- # University Politehnica of Bucharest # -->
<!-- # Faculty of Engineering in Foreign Languages # -->
<!-- # Department of Engineering in Foreign Languages # -->
<!-- # # -->
<!-- # Area: European Union # -->
<!-- # Date: 04/01/2021 # -->
<!-- # # -->
<!-- # Cite this work as: # -->
<!-- # Paul A. Gagniuc. Algorithms in Bioinformatics: Theory and Implementation. John Wiley & Sons, 2021, ISBN: 9781119697961. # -->
<!-- # # -->
<!-- ############################################################################################################################## -->
<script>
// THE MOTIF SCANNER
var z = "AAAAAACAGGTGAGTAAAAAAAA";
document.write('z = "' + z + '"<hr>');
var w = '';
var u = z.length - s.length + 2;
for(var l=0; l<u; l++) {
w = z.substr(l, s.length-1);
var d = w.split('');
var r = 'score = ';
var score = 0;
for(var f=0; f<d.length; f++){
for(var h=0; h<a.length; h++){
if(d[f]==p[h][0])
{
r += '(' + p[h][f+1] + ')+';
score += Number(p[h][f+1]);
}
}
}
score = score.toFixed(1);
document.write('sw('+(l+1)+') = "'+w+'"<br>'+r+'='+score+'<hr>');
}
</script>