diff --git a/docs/FAQ.md b/docs/FAQ.md index efaa67e..a419912 100644 --- a/docs/FAQ.md +++ b/docs/FAQ.md @@ -6,14 +6,14 @@ title: FAQ Page FAQ --- --- -1.) Does PhosNetVis requires the users to login? +1.) Does PhosNetVis require the users to login?
-No PhosNetVis does not requires you to login. +No PhosNetVis does not require you to login.

-2.) What are some other tools which can be used for doing Kinase-substrate enrichment analysis? +2.) What are alternative tools to fKSEA for conducting kinase-substrate enrichment analysis?
-If the users have GeneId and residue Ids then KSEA tool can be used. Some other tools are KEA3 and KSEA professional. +Some other tools commonly used in the literature are KSEA,KEA3 and KSEA professional.

3.) What is phosphorylation and why is it important? @@ -35,5 +35,12 @@ A KSI network shows how kinases (special proteins) interact with other proteins 5.) Does PhosNetVis store data on a server?
PhosnetVis runs on the client browser window. All modules except fGSEA(fast gene-set enrichment algorithm) run on the local browser. For fGSEA, the data are sent to a HIPAA-compliant server at the Icahn School of Medicine, through a HTTPS protocol which is safe and secure. Once the fGSEA is run, no data is stored on the server. +
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+6.) I have my data in gene ID format instead of Protein ID format. Can I still use PhosNetvis? +
+Yes, absolutely! For fKSEA analyses, you need to first convert the gene IDs to Protein Accession IDs using an API such as UniProt. Then, you can run fKSEA analysis. For Network Visualization, you can upload your data in gene ID format directly to the "Upload Data for Visualization" section. +
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