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cluster.yaml
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__default__:
time: "05:00:00"
mem: 20g
cpus: 1
nodes: 1
output: "workup/logs/cluster/{rule}.{wildcards.sample}.out"
error: "workup/logs/cluster/{rule}.{wildcards.sample}.err"
cat_ligation_efficiency:
time: "05:00:00"
mem: 20g
cpus: 1
nodes: 1
output: "workup/logs/cluster/{rule}.out"
error: "workup/logs/cluster/{rule}.err"
cutadapt:
time: "05:00:00"
mem: 20g
cpus: 10
nodes: 1
output: "workup/logs/cluster/{rule}.{wildcards.sample}.out"
error: "workup/logs/cluster/{rule}.{wildcards.sample}.err"
bowtie2_align:
time: "12:00:00"
mem: 50g
cpus: 10
nodes: 1
output: "workup/logs/cluster/{rule}.{wildcards.sample}.out"
error: "workup/logs/cluster/{rule}.{wildcards.sample}.err"
star_align_dna:
time: "24:00:00"
mem: 50g
cpus: 10
nodes: 1
output: "workup/logs/cluster/{rule}.{wildcards.sample}.out"
error: "workup/logs/cluster/{rule}.{wildcards.sample}.err"
star_align_rna:
time: "24:00:00"
mem: 50g
cpus: 10
nodes: 1
output: "workup/logs/cluster/{rule}.{wildcards.sample}.out"
error: "workup/logs/cluster/{rule}.{wildcards.sample}.err"
hisat2_align:
time: "12:00:00"
mem: 50g
cpus: 10
nodes: 1
output: "workup/logs/cluster/{rule}.{wildcards.sample}.out"
error: "workup/logs/cluster/{rule}.{wildcards.sample}.err"
annotate_rna:
time: "5:00:00"
mem: 50g
cpus: 10
nodes: 1
output: "workup/logs/cluster/{rule}.{wildcards.sample}.out"
error: "workup/logs/cluster/{rule}.{wildcards.sample}.err"
annotate_dna:
time: "5:00:00"
mem: 50g
cpus: 10
nodes: 1
output: "workup/logs/cluster/{rule}.{wildcards.sample}.out"
error: "workup/logs/cluster/{rule}.{wildcards.sample}.err"
annotate_rna_star:
time: "5:00:00"
mem: 50g
cpus: 10
nodes: 1
output: "workup/logs/cluster/{rule}.{wildcards.sample}.out"
error: "workup/logs/cluster/{rule}.{wildcards.sample}.err"
bowtie2_align_rna_repeats:
time: "5:00:00"
mem: 50g
cpus: 10
nodes: 1
output: "workup/logs/cluster/{rule}.{wildcards.sample}.out"
error: "workup/logs/cluster/{rule}.{wildcards.sample}.err"
star_align_rrna:
time: "5:00:00"
mem: 50g
cpus: 10
nodes: 1
output: "workup/logs/cluster/{rule}.{wildcards.sample}.out"
error: "workup/logs/cluster/{rule}.{wildcards.sample}.err"
add_tags_bowtie2:
time: "5:00:00"
mem: 50g
cpus: 5
nodes: 1
multiqc:
time: "05:00:00"
mem: 20g
cpus: 1
nodes: 1
output: "workup/logs/cluster/{rule}.out"
error: "workup/logs/cluster/{rule}.err"