GettingStarted.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {
    "colab_type": "text",
    "id": "lV9-qpW7jOZx"
   },
   "source": [
    "## Verify Python 3"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {
    "colab": {
     "base_uri": "https://localhost:8080/",
     "height": 34
    },
    "colab_type": "code",
    "id": "-8eDpkW6jU0s",
    "outputId": "1016309c-7d55-470d-f8fa-a1b426fa5492"
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Alrite! We are using Python 3\n"
     ]
    }
   ],
   "source": [
    "import sys\n",
    "\n",
    "if sys.version_info[0] < 3:\n",
    "    raise \"Must be using Python 3\"\n",
    "else:\n",
    "    print(\"Alrite! We are using Python \"+str(sys.version_info[0]))"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "colab_type": "text",
    "id": "CItgtMaJjaeR"
   },
   "source": [
    "## Install OMXWare"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 14,
   "metadata": {
    "colab": {},
    "colab_type": "code",
    "id": "LLktsOe9jbqv",
    "scrolled": true
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Found existing installation: omxware 0.1.45\n",
      "Uninstalling omxware-0.1.45:\n",
      "  Would remove:\n",
      "    /home/vader/Projects/python3_env/lib/python3.7/site-packages/omxware-0.1.45.dist-info/*\n",
      "    /home/vader/Projects/python3_env/lib/python3.7/site-packages/omxware/*\n",
      "Proceed (y/n)?   Successfully uninstalled omxware-0.1.45\n",
      "Collecting omxware\n",
      "  Downloading omxware-0.1.45-py2.py3-none-any.whl (34 kB)\n",
      "Requirement already satisfied: pandas in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from omxware) (1.0.1)\n",
      "Requirement already satisfied: configparser in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from omxware) (5.0.0)\n",
      "Requirement already satisfied: IPython in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from omxware) (7.15.0)\n",
      "Requirement already satisfied: matplotlib in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from omxware) (3.2.0)\n",
      "Requirement already satisfied: pycryptodome in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from omxware) (3.9.8)\n",
      "Requirement already satisfied: urllib3<=1.24.2 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from omxware) (1.24.2)\n",
      "Requirement already satisfied: simplejson>=3.16.0 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from omxware) (3.17.0)\n",
      "Requirement already satisfied: python-keycloak>=0.16.0 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from omxware) (0.20.0)\n",
      "Requirement already satisfied: requests in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from omxware) (2.23.0)\n",
      "Requirement already satisfied: pytz>=2017.2 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from pandas->omxware) (2019.3)\n",
      "Requirement already satisfied: python-dateutil>=2.6.1 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from pandas->omxware) (2.8.1)\n",
      "Requirement already satisfied: numpy>=1.13.3 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from pandas->omxware) (1.18.1)\n",
      "Requirement already satisfied: traitlets>=4.2 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from IPython->omxware) (4.3.3)\n",
      "Requirement already satisfied: jedi>=0.10 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from IPython->omxware) (0.17.0)\n",
      "Requirement already satisfied: prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from IPython->omxware) (3.0.5)\n",
      "Requirement already satisfied: decorator in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from IPython->omxware) (4.4.2)\n",
      "Requirement already satisfied: pygments in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from IPython->omxware) (2.6.1)\n",
      "Requirement already satisfied: pickleshare in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from IPython->omxware) (0.7.5)\n",
      "Requirement already satisfied: backcall in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from IPython->omxware) (0.1.0)\n",
      "Requirement already satisfied: pexpect; sys_platform != \"win32\" in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from IPython->omxware) (4.8.0)\n",
      "Requirement already satisfied: setuptools>=18.5 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from IPython->omxware) (45.2.0)\n",
      "Requirement already satisfied: cycler>=0.10 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from matplotlib->omxware) (0.10.0)\n",
      "Requirement already satisfied: kiwisolver>=1.0.1 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from matplotlib->omxware) (1.1.0)\n",
      "Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from matplotlib->omxware) (2.4.6)\n",
      "Requirement already satisfied: python-jose>=1.4.0 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from python-keycloak>=0.16.0->omxware) (3.1.0)\n",
      "Requirement already satisfied: idna<3,>=2.5 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from requests->omxware) (2.9)\n",
      "Requirement already satisfied: chardet<4,>=3.0.2 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from requests->omxware) (3.0.4)\n",
      "Requirement already satisfied: certifi>=2017.4.17 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from requests->omxware) (2020.4.5.2)\n",
      "Requirement already satisfied: six>=1.5 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from python-dateutil>=2.6.1->pandas->omxware) (1.14.0)\n",
      "Requirement already satisfied: ipython-genutils in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from traitlets>=4.2->IPython->omxware) (0.2.0)\n",
      "Requirement already satisfied: parso>=0.7.0 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from jedi>=0.10->IPython->omxware) (0.7.0)\n",
      "Requirement already satisfied: wcwidth in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0->IPython->omxware) (0.2.4)\n",
      "Requirement already satisfied: ptyprocess>=0.5 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from pexpect; sys_platform != \"win32\"->IPython->omxware) (0.6.0)\n",
      "Requirement already satisfied: ecdsa<1.0 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from python-jose>=1.4.0->python-keycloak>=0.16.0->omxware) (0.15)\n",
      "Requirement already satisfied: rsa in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from python-jose>=1.4.0->python-keycloak>=0.16.0->omxware) (4.0)\n",
      "Requirement already satisfied: pyasn1 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from python-jose>=1.4.0->python-keycloak>=0.16.0->omxware) (0.4.8)\n",
      "Installing collected packages: omxware\n",
      "Successfully installed omxware-0.1.45\n",
      "\u001b[33mWARNING: You are using pip version 20.0.2; however, version 20.2.3 is available.\n",
      "You should consider upgrading via the '/home/vader/Projects/python3_env/bin/python -m pip install --upgrade pip' command.\u001b[0m\n",
      "Requirement already satisfied: pprint in /home/vader/Projects/python3_env/lib/python3.7/site-packages (0.1)\n",
      "\u001b[33mWARNING: You are using pip version 20.0.2; however, version 20.2.3 is available.\n",
      "You should consider upgrading via the '/home/vader/Projects/python3_env/bin/python -m pip install --upgrade pip' command.\u001b[0m\n",
      "Requirement already satisfied: py4j in /home/vader/Projects/python3_env/lib/python3.7/site-packages (0.10.7)\n",
      "\u001b[33mWARNING: You are using pip version 20.0.2; however, version 20.2.3 is available.\n",
      "You should consider upgrading via the '/home/vader/Projects/python3_env/bin/python -m pip install --upgrade pip' command.\u001b[0m\n",
      "Requirement already satisfied: pandas in /home/vader/Projects/python3_env/lib/python3.7/site-packages (1.0.1)\n",
      "Requirement already satisfied: python-dateutil>=2.6.1 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from pandas) (2.8.1)\n",
      "Requirement already satisfied: pytz>=2017.2 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from pandas) (2019.3)\n",
      "Requirement already satisfied: numpy>=1.13.3 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from pandas) (1.18.1)\n",
      "Requirement already satisfied: six>=1.5 in /home/vader/Projects/python3_env/lib/python3.7/site-packages (from python-dateutil>=2.6.1->pandas) (1.14.0)\n",
      "\u001b[33mWARNING: You are using pip version 20.0.2; however, version 20.2.3 is available.\n",
      "You should consider upgrading via the '/home/vader/Projects/python3_env/bin/python -m pip install --upgrade pip' command.\u001b[0m\n"
     ]
    }
   ],
   "source": [
    "!echo 'y' | pip uninstall omxware\n",
    "\n",
    "#Install OMXWare client\n",
    "!pip install --no-cache-dir omxware \n",
    "\n",
    "#Install PrettyPrint\n",
    "!pip install --no-cache-dir pprint\n",
    "\n",
    "#Install py4j to use Dynamic forms\n",
    "!pip install --no-cache-dir py4j\n",
    "\n",
    "#Install panda\n",
    "!pip install --no-cache-dir pandas"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 15,
   "metadata": {
    "colab": {
     "base_uri": "https://localhost:8080/",
     "height": 216
    },
    "colab_type": "code",
    "id": "fcR_u7flj-9g",
    "outputId": "29dd8e8c-6137-4893-da7c-f9d3d1a3002f",
    "scrolled": true
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Name: omxware\r\n",
      "Version: 0.1.45\r\n",
      "Summary: IBM Functional Genomics Platform SDK to explore data.\r\n",
      "Home-page: https://github.ibm.com/GrandChallenge-Almaden/omxware-pypi\r\n",
      "Author: Harsha Krishnareddy\r\n",
      "Author-email: hvkrishn@us.ibm.com\r\n",
      "License: IBM\r\n",
      "Location: /home/vader/Projects/python3_env/lib/python3.7/site-packages\r\n",
      "Requires: pandas, pycryptodome, matplotlib, python-keycloak, requests, IPython, configparser, urllib3, simplejson\r\n",
      "Required-by: \r\n"
     ]
    }
   ],
   "source": [
    "!pip show omxware"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "colab_type": "text",
    "id": "A8nrTsIFkIf_"
   },
   "source": [
    "### Import OMXWare and initialize"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "metadata": {
    "colab": {},
    "colab_type": "code",
    "id": "QeyZJ-n1kLav"
   },
   "outputs": [],
   "source": [
    "%matplotlib inline\n",
    "\n",
    "import json\n",
    "import pprint\n",
    "pp = pprint.PrettyPrinter(indent=4)\n",
    "\n",
    "from IPython.display import display\n",
    "\n",
    "import omxware\n",
    "\n",
    "\n",
    "# --- Authentication options --- #\n",
    "# generate token with OMXWare user name and password (likely done once and then stored in file, see usage below)\n",
    "token = omxware.get_token('username', 'password') # fill in password to initiate token\n",
    "\n",
    "# or\n",
    "\n",
    "# use previously generated token loaded from file\n",
    "# token_path = \"./omxware_collaborative_work/super_awesome_token\"  # update for your path to the token file you create\n",
    "# f = open(token_path)\n",
    "# token = f.readline()\n",
    "\n",
    "# provide your token to authenticate with OMXWare\n",
    "omx = omxware.omxware(token)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 17,
   "metadata": {
    "colab": {},
    "colab_type": "code",
    "id": "6yhYiy9bkRGM"
   },
   "outputs": [],
   "source": [
    "# help(omx)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "colab_type": "text",
    "id": "bqGve5tHkbAG"
   },
   "source": [
    "#### Genomes for Genus: 'Abiotrophia'"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 18,
   "metadata": {
    "colab": {
     "base_uri": "https://localhost:8080/",
     "height": 111
    },
    "colab_type": "code",
    "id": "1QImwcdTkcTn",
    "outputId": "7e321b3b-4a43-404d-9a8c-dc9ee6750679"
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>genera</th>\n",
       "      <th>genome_type</th>\n",
       "      <th>id</th>\n",
       "      <th>taxid</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>[abiotrophia]</td>\n",
       "      <td>GENBANK</td>\n",
       "      <td>GCA_013267415.1</td>\n",
       "      <td>46123</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>[abiotrophia]</td>\n",
       "      <td>SRA</td>\n",
       "      <td>SRR1922824</td>\n",
       "      <td>46123</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>[abiotrophia]</td>\n",
       "      <td>SRA</td>\n",
       "      <td>DRR015936</td>\n",
       "      <td>46123</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "          genera genome_type               id  taxid\n",
       "0  [abiotrophia]     GENBANK  GCA_013267415.1  46123\n",
       "1  [abiotrophia]         SRA       SRR1922824  46123\n",
       "2  [abiotrophia]         SRA        DRR015936  46123"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "# Get Genus object for genus_name = 'abiotrophia'\n",
    "genus = omx.genus(genus_names='abiotrophia').results()[0]\n",
    "\n",
    "# Get Genomes for the Genus ^^^^^^^^\n",
    "genomes_for_genus = genus.genomes()\n",
    "g4gdf = genomes_for_genus.results(type='df')[['genera','genome_type','id','taxid']]\n",
    "\n",
    "display(g4gdf)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "colab_type": "text",
    "id": "8vOEAf2Wkhsw"
   },
   "source": [
    "### Get Genome by its ID"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 19,
   "metadata": {
    "colab": {
     "base_uri": "https://localhost:8080/",
     "height": 102
    },
    "colab_type": "code",
    "id": "rVk9u_1AkivX",
    "outputId": "d9025171-56b3-40ea-ddcf-50e2abf244a1"
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "ID: SRR1922824\n",
      "Type: SRA\n",
      "TaxID: 46123\n",
      "Genera: [<omxware.entities.Genus.Genus object at 0x7f0e7c894990>]\n"
     ]
    }
   ],
   "source": [
    "genome_id = 'SRR1922824'\n",
    "\n",
    "genome = omx.genomes(ids=genome_id).results()[0]\n",
    "\n",
    "# For the Genome ^^^^^^^^^^^\n",
    "id = genome.id()\n",
    "typ = genome.genome_type()\n",
    "taxid = genome.taxid()\n",
    "\n",
    "genera = genome.genus().results()\n",
    "\n",
    "print('ID: ' + id)\n",
    "print('Type: ' + typ)\n",
    "print('TaxID: ' + taxid)\n",
    "print('Genera: ' + str(genera))"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "colab_type": "text",
    "id": "ASjOxrcxkmhR"
   },
   "source": [
    "### Get Genes for a Genome"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 20,
   "metadata": {
    "colab": {},
    "colab_type": "code",
    "id": "r3Xhnw2PknKX"
   },
   "outputs": [],
   "source": [
    "genes = genome.genes(page_number=1, page_size=10)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "colab_type": "text",
    "id": "CZxxfTZ7kqfc"
   },
   "source": [
    "### Distribution of Genes by Genera"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 21,
   "metadata": {
    "colab": {
     "base_uri": "https://localhost:8080/",
     "height": 297
    },
    "colab_type": "code",
    "id": "Y-85YV9xkrYR",
    "outputId": "0509f204-7074-4727-e78c-9dbac29a2c84"
   },
   "outputs": [
    {
     "data": {
      "image/png": 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\n",
      "text/plain": [
       "<Figure size 432x288 with 1 Axes>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "genes.show_facets(name='genera', topN=5)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "colab_type": "text",
    "id": "dfTw1ZaXkvfv"
   },
   "source": [
    "### Get the Genes"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 22,
   "metadata": {
    "colab": {
     "base_uri": "https://localhost:8080/",
     "height": 529
    },
    "colab_type": "code",
    "id": "aTF89EUSkwHi",
    "outputId": "8dc6bddd-788d-42f0-d47f-858a03445d45"
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>id</th>\n",
       "      <th>name</th>\n",
       "      <th>type</th>\n",
       "      <th>genera</th>\n",
       "      <th>genomes</th>\n",
       "      <th>sequence_length</th>\n",
       "      <th>status</th>\n",
       "      <th>go_codes</th>\n",
       "      <th>interproscan_ids</th>\n",
       "      <th>omx_creation_ts</th>\n",
       "      <th>omx_modified_ts</th>\n",
       "      <th>classification</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>6603d7ee64b03dcf1978c16ff541a443</td>\n",
       "      <td>[L-arginine-specific L-amino acid ligase]</td>\n",
       "      <td>gene</td>\n",
       "      <td>[abiotrophia]</td>\n",
       "      <td>[SRR1922824]</td>\n",
       "      <td>1167</td>\n",
       "      <td>active</td>\n",
       "      <td>[GO:0005524, GO:0046872]</td>\n",
       "      <td>[IPR011761]</td>\n",
       "      <td>2018-02-28T09:30:34.000-08:00</td>\n",
       "      <td>2018-02-28T09:30:34.000-08:00</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>ee56e40e3465b892b76d9a8752784a62</td>\n",
       "      <td>[hypothetical protein]</td>\n",
       "      <td>gene</td>\n",
       "      <td>[abiotrophia]</td>\n",
       "      <td>[SRR1922824]</td>\n",
       "      <td>1377</td>\n",
       "      <td>active</td>\n",
       "      <td>[]</td>\n",
       "      <td>[IPR017853, IPR032267]</td>\n",
       "      <td>2018-02-28T09:30:33.000-08:00</td>\n",
       "      <td>2018-02-28T09:30:33.000-08:00</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>a98e35d98faeac3cca4c98281fdbb8b8</td>\n",
       "      <td>[ComE operon protein 1]</td>\n",
       "      <td>gene</td>\n",
       "      <td>[abiotrophia]</td>\n",
       "      <td>[SRR1922824]</td>\n",
       "      <td>669</td>\n",
       "      <td>active</td>\n",
       "      <td>[GO:0003677, GO:0006281]</td>\n",
       "      <td>[IPR003583, IPR004509, IPR010994, IPR019554]</td>\n",
       "      <td>2018-02-28T09:30:34.000-08:00</td>\n",
       "      <td>2018-02-28T09:30:34.000-08:00</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>b93cde3fdd6360fb7911bbcdbefb7f33</td>\n",
       "      <td>[Energy-coupling factor transporter ATP-bindin...</td>\n",
       "      <td>gene</td>\n",
       "      <td>[abiotrophia]</td>\n",
       "      <td>[SRR1922824]</td>\n",
       "      <td>897</td>\n",
       "      <td>active</td>\n",
       "      <td>[GO:0005524, GO:0016020, GO:0016887, GO:0055085]</td>\n",
       "      <td>[IPR003439, IPR003593, IPR015856, IPR017871, I...</td>\n",
       "      <td>2018-02-28T09:30:34.000-08:00</td>\n",
       "      <td>2018-02-28T09:30:34.000-08:00</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>c7c69b17e25f5fbe3195f5fe4d9f7516</td>\n",
       "      <td>[DNA topoisomerase 4 subunit B]</td>\n",
       "      <td>gene</td>\n",
       "      <td>[abiotrophia]</td>\n",
       "      <td>[SRR1922824]</td>\n",
       "      <td>2088</td>\n",
       "      <td>active</td>\n",
       "      <td>[GO:0003677, GO:0003918, GO:0005524, GO:000569...</td>\n",
       "      <td>[IPR000565, IPR001241, IPR002288, IPR003594, I...</td>\n",
       "      <td>2018-02-28T09:30:33.000-08:00</td>\n",
       "      <td>2018-02-28T09:30:33.000-08:00</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>9736211078bd74005ee0e4b9f8ac7fea</td>\n",
       "      <td>[Thiamine pyrophosphokinase]</td>\n",
       "      <td>gene</td>\n",
       "      <td>[abiotrophia]</td>\n",
       "      <td>[SRR1922824]</td>\n",
       "      <td>675</td>\n",
       "      <td>active</td>\n",
       "      <td>[GO:0004788, GO:0005524, GO:0006772, GO:000922...</td>\n",
       "      <td>[IPR006282, IPR007371, IPR007373, IPR036759]</td>\n",
       "      <td>2018-02-28T09:30:33.000-08:00</td>\n",
       "      <td>2018-02-28T09:30:33.000-08:00</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6</th>\n",
       "      <td>1faecc60aa8e96d69194feb11e043e07</td>\n",
       "      <td>[hypothetical protein]</td>\n",
       "      <td>gene</td>\n",
       "      <td>[abiotrophia]</td>\n",
       "      <td>[DRR015936, SRR1922824]</td>\n",
       "      <td>183</td>\n",
       "      <td>active</td>\n",
       "      <td>[]</td>\n",
       "      <td>[]</td>\n",
       "      <td>2018-02-28T09:30:26.000-08:00</td>\n",
       "      <td>2018-02-28T09:30:26.000-08:00</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7</th>\n",
       "      <td>1984f6e62eac007041cb8c3944cc94dd</td>\n",
       "      <td>[hypothetical protein]</td>\n",
       "      <td>gene</td>\n",
       "      <td>[abiotrophia]</td>\n",
       "      <td>[SRR1922824]</td>\n",
       "      <td>861</td>\n",
       "      <td>active</td>\n",
       "      <td>[GO:0003677, GO:0043565]</td>\n",
       "      <td>[IPR001387, IPR010057, IPR010982]</td>\n",
       "      <td>2018-02-28T09:30:34.000-08:00</td>\n",
       "      <td>2018-02-28T09:30:34.000-08:00</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>8</th>\n",
       "      <td>90b19bd2ed080a5dc98981ffdf4c790e</td>\n",
       "      <td>[DNA topoisomerase 4 subunit A]</td>\n",
       "      <td>gene</td>\n",
       "      <td>[abiotrophia]</td>\n",
       "      <td>[SRR1922824]</td>\n",
       "      <td>2460</td>\n",
       "      <td>active</td>\n",
       "      <td>[GO:0003677, GO:0003916, GO:0003918, GO:000552...</td>\n",
       "      <td>[IPR002205, IPR005741, IPR006691, IPR013757, I...</td>\n",
       "      <td>2018-02-28T09:30:33.000-08:00</td>\n",
       "      <td>2018-02-28T09:30:33.000-08:00</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>9</th>\n",
       "      <td>cfecbc0f40e063e3bd08db30e02ab856</td>\n",
       "      <td>[30S ribosomal protein S19]</td>\n",
       "      <td>gene</td>\n",
       "      <td>[abiotrophia]</td>\n",
       "      <td>[DRR015936, GCA_013267415.1, SRR1922824]</td>\n",
       "      <td>282</td>\n",
       "      <td>active</td>\n",
       "      <td>[GO:0003723, GO:0003735, GO:0005840, GO:000641...</td>\n",
       "      <td>[IPR002222, IPR005732, IPR020934, IPR023575]</td>\n",
       "      <td>2018-02-28T09:30:25.000-08:00</td>\n",
       "      <td>2020-06-05T18:09:09.000-07:00</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "                                 id  \\\n",
       "0  6603d7ee64b03dcf1978c16ff541a443   \n",
       "1  ee56e40e3465b892b76d9a8752784a62   \n",
       "2  a98e35d98faeac3cca4c98281fdbb8b8   \n",
       "3  b93cde3fdd6360fb7911bbcdbefb7f33   \n",
       "4  c7c69b17e25f5fbe3195f5fe4d9f7516   \n",
       "5  9736211078bd74005ee0e4b9f8ac7fea   \n",
       "6  1faecc60aa8e96d69194feb11e043e07   \n",
       "7  1984f6e62eac007041cb8c3944cc94dd   \n",
       "8  90b19bd2ed080a5dc98981ffdf4c790e   \n",
       "9  cfecbc0f40e063e3bd08db30e02ab856   \n",
       "\n",
       "                                                name  type         genera  \\\n",
       "0          [L-arginine-specific L-amino acid ligase]  gene  [abiotrophia]   \n",
       "1                             [hypothetical protein]  gene  [abiotrophia]   \n",
       "2                            [ComE operon protein 1]  gene  [abiotrophia]   \n",
       "3  [Energy-coupling factor transporter ATP-bindin...  gene  [abiotrophia]   \n",
       "4                    [DNA topoisomerase 4 subunit B]  gene  [abiotrophia]   \n",
       "5                       [Thiamine pyrophosphokinase]  gene  [abiotrophia]   \n",
       "6                             [hypothetical protein]  gene  [abiotrophia]   \n",
       "7                             [hypothetical protein]  gene  [abiotrophia]   \n",
       "8                    [DNA topoisomerase 4 subunit A]  gene  [abiotrophia]   \n",
       "9                        [30S ribosomal protein S19]  gene  [abiotrophia]   \n",
       "\n",
       "                                    genomes  sequence_length  status  \\\n",
       "0                              [SRR1922824]             1167  active   \n",
       "1                              [SRR1922824]             1377  active   \n",
       "2                              [SRR1922824]              669  active   \n",
       "3                              [SRR1922824]              897  active   \n",
       "4                              [SRR1922824]             2088  active   \n",
       "5                              [SRR1922824]              675  active   \n",
       "6                   [DRR015936, SRR1922824]              183  active   \n",
       "7                              [SRR1922824]              861  active   \n",
       "8                              [SRR1922824]             2460  active   \n",
       "9  [DRR015936, GCA_013267415.1, SRR1922824]              282  active   \n",
       "\n",
       "                                            go_codes  \\\n",
       "0                           [GO:0005524, GO:0046872]   \n",
       "1                                                 []   \n",
       "2                           [GO:0003677, GO:0006281]   \n",
       "3   [GO:0005524, GO:0016020, GO:0016887, GO:0055085]   \n",
       "4  [GO:0003677, GO:0003918, GO:0005524, GO:000569...   \n",
       "5  [GO:0004788, GO:0005524, GO:0006772, GO:000922...   \n",
       "6                                                 []   \n",
       "7                           [GO:0003677, GO:0043565]   \n",
       "8  [GO:0003677, GO:0003916, GO:0003918, GO:000552...   \n",
       "9  [GO:0003723, GO:0003735, GO:0005840, GO:000641...   \n",
       "\n",
       "                                    interproscan_ids  \\\n",
       "0                                        [IPR011761]   \n",
       "1                             [IPR017853, IPR032267]   \n",
       "2       [IPR003583, IPR004509, IPR010994, IPR019554]   \n",
       "3  [IPR003439, IPR003593, IPR015856, IPR017871, I...   \n",
       "4  [IPR000565, IPR001241, IPR002288, IPR003594, I...   \n",
       "5       [IPR006282, IPR007371, IPR007373, IPR036759]   \n",
       "6                                                 []   \n",
       "7                  [IPR001387, IPR010057, IPR010982]   \n",
       "8  [IPR002205, IPR005741, IPR006691, IPR013757, I...   \n",
       "9       [IPR002222, IPR005732, IPR020934, IPR023575]   \n",
       "\n",
       "                 omx_creation_ts                omx_modified_ts classification  \n",
       "0  2018-02-28T09:30:34.000-08:00  2018-02-28T09:30:34.000-08:00     [bacteria]  \n",
       "1  2018-02-28T09:30:33.000-08:00  2018-02-28T09:30:33.000-08:00     [bacteria]  \n",
       "2  2018-02-28T09:30:34.000-08:00  2018-02-28T09:30:34.000-08:00     [bacteria]  \n",
       "3  2018-02-28T09:30:34.000-08:00  2018-02-28T09:30:34.000-08:00     [bacteria]  \n",
       "4  2018-02-28T09:30:33.000-08:00  2018-02-28T09:30:33.000-08:00     [bacteria]  \n",
       "5  2018-02-28T09:30:33.000-08:00  2018-02-28T09:30:33.000-08:00     [bacteria]  \n",
       "6  2018-02-28T09:30:26.000-08:00  2018-02-28T09:30:26.000-08:00     [bacteria]  \n",
       "7  2018-02-28T09:30:34.000-08:00  2018-02-28T09:30:34.000-08:00     [bacteria]  \n",
       "8  2018-02-28T09:30:33.000-08:00  2018-02-28T09:30:33.000-08:00     [bacteria]  \n",
       "9  2018-02-28T09:30:25.000-08:00  2020-06-05T18:09:09.000-07:00     [bacteria]  "
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "gene_results = genes.results(type='df')\n",
    "display(gene_results)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "colab_type": "text",
    "id": "gUdBTk84k0hz"
   },
   "source": [
    "### Get Genes as Fasta"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 23,
   "metadata": {
    "colab": {
     "base_uri": "https://localhost:8080/",
     "height": 382
    },
    "colab_type": "code",
    "id": "OEYHcQeik1Ga",
    "outputId": "f6487b50-c3c3-4616-a71f-19779b0962fa"
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      ">OMX_gene_6603d7ee64b03dcf1978c16ff541a443|L-arginine-specific L-amino acid ligase\n",
      "ATGAACTATATTGTTATTTCTCCCTACTACCCTGCTAACTTCCAGCCCTTTTCCTATAAGTTACGTCAACATGGCGTCAATGTCCTAGGGATTGGCCAGGAACCTTATGACCAACTCAACGATGAGCTCAAAGCGACCCTGACTGAATACTTCCGGGTGGATAATCTGGAAGACCTGGACCAAGTCACTCGTGCGGTTGCCTTCTTCTTCCACAAGTATGGACCGATCGACCGTATTGAGTCCCACAATGAATACTGGCTGGAATTAGATGCTGGTCTGCGTCAGCAGTTCAATATCTTTGGCGTCAAACCCCAAGATTTGGCCAAAACTAAGTACAAGTCCGTCATGAAGGAATACTTCCGCAAGGCTGGCGTACCGGTCGTGGACGGTCGCGTGGTTAGCCAGACTTCAGAAATCGATGCCGCCGTCCAAGACTTAGGCCTGCCACTGATTGCTAAACCCGATAATGGCGTGGGGGCTGCCGCTACCTACAAACTCATGACGCCAGAAGATGTGGCCCAATTCAAGGCTACTTGGGGCGAGTCCACTTCTTACTTCCTGGAGCAGTTTGTCTCCTATCCAACGGTGACGACTTTTGATGGTCTGATTGATGCCGAGGGTAATATTGTCTTCGAAACCGGTCTGACCTACTACTACCCACCACTGGAATTAGTCTTGGAGCGTAAGGACAATGCCTTCTATATTGAGAAGGAACTCCATCCTAAGTTGCGTGAATATGGCCATGCCATCATCAAGTCCTTCGGCATGAAGGAGCGCTTCTTCCATATCGAATTCTTCCGGACGCCGGACGATGACTTTATCGCCATTGAATACAACAACCGCCCAGCCGGTGGCTTCTGTATCGACATCTACAACTATGCCCATGATATTGACCTCTACGATTATTGGGCTAAGCTAGTGACAGGCCAAGAACTGCCAAAGCAGACCGCCCATGGTCGCTACTGCCTGGCGGTAGCCCGTCGCGATGAGCATACTTATGTGGCCAGCCACCAAGACATCCTGGATCGATTCGCTGACCAGATCAAGATGACTGCCCGCATTCCGCAGGCTTTCGCTGATTTACTTGGGGACAGTCTCTATGTCATGACGACCCCTTCCCGTCAAGTTGTTGATGATATGGTCCGTTTTGTCGGCCAACGCGTCTAA\n",
      ">OMX_gene_ee56e40e3465b892b76d9a8752784a62|hypothetical protein\n",
      "ATGCGTCAATATTACTTTAGCCGGCTTGTTTTAGCCTGTCTACTCACAGTCAGTCTAATCCAGCCCAATCGAGTGAATGCCCAAGACCAAGTCTTACGTCAGGCTAGCTTTGACTGGCAGGATCCTGAATCAGGGAACCCGCTCATGGGCTATGCCCTCCAAGCTGAAAAATCCCAAGTAGATTCGGATATTCAACTTCTTTACGTCGATGTGACTTGGAAAGAATTGGAACCCCAAAAGGGGAAATATAATTTTGAAGCCATTGAGAAGGCCAATCAGTTTGAGCGTTGGCGCAAAGAAGGCAAGCATTTGGTTTTGCGCTTTGTGCTAGATTTACCTGGCCAGGACCGGCATCAAGATATCCCGGATTGGCTCTACCAAGACATTAAGGGGGCTGGTGACTGGTATCACACCGATTATGGCCAAGGTTTTTCACCAGACTATAGTCAAGAAGCCCTGATTAAAGCCCATGACAAGGCGGTGGCTGCCATGGGCCAGCGTTGGGGGCAGGATGGCTTTGTCTCCTTCATTGAGTTGGGCAGTGTCGGCCACTGGGGCGAGTGGCATGTCAACTATGAGAAGGGACTCAAAAGGTTACCGTCTGAAGACATTCTGGAACGTTACGTGGTGCCTTGGCGCACGGCCTTTCCTAAGACTCAGATTCTCATGCGCCGGCCTTTCAAATGGGGTCAGACCTATCAATTAGGACTCTATAACGACATGGTTGGCGAAGAAATCAATACTAGCCAGTGGTTGGAGTGGATTCAAGCTGGTGGAGTTTACGACCAGACTCAAAACAAGAGCTTGCTTGCCATGCCACAGGCTTGGAAGACCCTTGCCATTGGCGGCGAAATGACCAGCGCCCATTCCATGGAAGACCTGATGGGGTCACGACTCCAGGAAGTCTTGAAGCATGTTAAAGCCTCACATATGACCTTTATTGGGCCAAAGGCGCCTAAAGCTGATTTAGGTCAGGCAGCCTATAAGCAAATTCTGAGTCAACTTGGTTATCAAATCTATGTCTCTCAGGCTCAGCTAGCGCAAAAAGGGCAAGAGCAGACTATGACCTTGACCTTTGAAAATAAAGGAGCAGCGCCTTTCTACTATGACTGGCCGCTATACCTCTATCTTCAAGATGGCCAGGGAAAAGAGCTTAAAAAGATTGAAGTGCCACTGACCTTGTCTCAGCTAGTGCCCGGGCGCCAAGAAACGGTGAGTGTGGCCTTAAATCTCTCGTCTCAAGAAAGTTCTCAGGCAGGGCATTATCAATACAGTCTAGGCATTGTGGACCCTATGACCGGCAAGGATGCCCTACGTTTGGCCATGCCGGGCTACGATGATCAGACGGGTCGGACGATTCTTTTTCCTGCCCAATAG\n",
      ">OMX_gene_a98e35d98faeac3cca4c98281fdbb8b8|ComE operon protein 1\n",
      "ATGGAATCCCAGTATCAACTTAAGACAGGTGCAGCTAAGCTAAAATGGTGGTTAGTTGGCTTATTTGCCATAGGAATTATAGGCATTGTCATTGGCTTAATATGGCTTAACTTGCGCCCAAGACGGCCCATAATGCAAGAAGAGTCTTCTATCAGTTCCAGTAGGCTTCCTGAGCCAATCTCTTCACAGCAATCCTCCCAGCCCGATAAGATTTATGTAGACCTCAAGGGAGCCGTCAAGCATCCAGGTGTCTATGCCCTAGATCAGGGTAGTCGGGTCTTTGACCTGCTGGAAATGGCGGGTGGTTTGACGGAAGATGCGGCCGAGCGGGCCCTTAACCAAGCACAACTCCTAGTGGATCAGCAGAGTCTCTATGTACCCACCATGGCGGAATGGGAGGCTGAGAGCCAGGGACCGCAAGCTAACGTGGTAGGAAGTCAGGATCCCTTAGTTTCTAGTCCTAGTCCTAATAGTGGCAAGGTTAATGTCAACCAAGCCGATTTGGCTCAATTAGAGACTTTGCCCGGTATTGGGGCTAAAAAAGCCCAAGCTATTATTGACTACCGGACGACAAACGGCTCCTTTCATTCGCTTGAGGACTTAGGCAAAGTCAAGGGCATCGGGCCTAAGATGCTGGAAAAGTTAAGAGATCTGGTGATTTTCCAATGA\n",
      ">OMX_gene_b93cde3fdd6360fb7911bbcdbefb7f33|Energy-coupling factor transporter ATP-binding protein EcfA2\n",
      "ATGGATCACACCATTGTATTCGACCAAGTAAGTTACCATTACAATGCCAATACGCCTTTTGAGGTAGCGGCCCTCTTCGACGTTAATTTAACCATTCCAGCCCACCAAGTGACTGCCGTCATCGGCCATACGGGTTCAGGCAAGTCGACTCTGATTCAACACCTTAATGTTTTGATTAAGCCAACCAAGGGCTCAGTACGTCTAGGGGATGTCTTGGTTACATCTACGGCTAAGTTACCTTCCCTCAAGCCCTTGCGTAAGCAGGTCGGTGTCGTCTTCCAATTCCCGGAAGCCCAGCTCTTTGAAGAGACGGTCCTCAAGGATGTCATGTTTGGACCTTTGAATTTTGGTGTCTCGGAAGAGGACGCGCTCGCCATTGCTAAGGAAAAATTATCCCTGGTCGGCATCAGTCCGGACCTCTATGAGCGCTCGCCTTTCGATCTCAGTGGAGGCCAAATGCGACGGGTGGCCATTGCGGGTGTTTTGGCCTTAGAACCGCAAGTGTTGGTCTTAGACGAGCCAACTGCCGGCTTAGACCCACTGGGTCAAGCCCAAATGCTGGACATGTTCATGCGCCTCCAAAAAGAGGATAAGTTGACCCTAGTCTTAATCAGTCACCAAATGGATGACGTTGCCCGTTATGCCGACCATGTCATTGTCATGGAAGGGGGCACGGTGGCTAAGACAGGGACGCCTGAACAGGTCTTCAGCCAGACGGATTGGTTGCGCCAACGGCGCTTAGATGTGCCACGCTCCATGCAGTTTCTGGAGAAATTACAGGAGCGCTTAGGGGACCAGGCCCTAGCTATCGACCAGGCGCCCCTGACCGTTGAAGCCTTAGCCGACTTGCTCATGGCCCATCTTCCAGCTAAGGAGGGGACCGGCCATGTTGGATAA\n",
      ">OMX_gene_c7c69b17e25f5fbe3195f5fe4d9f7516|DNA topoisomerase 4 subunit B\n",
      "ATGGCTGATAAGCAGCAATTATTAACAAATTATGGTGATGATGCCATCCAAATCCTAGAGGGTTTAGAAGCTGTACGTAAGCGTCCGGGTATGTATATCGGCTCTACTGATCAACGTGGCTTGCATCACCTTTTATATGAAATTGTGGACAATGCTGTCGATGAAGCTTTGTCAGGTTTTGCGGACCATATTAAGGTAACCATCTGTCAAGATGGTAGTGTTAAAGTTCAAGATAATGGTCGTGGTTTGCCAGTCGGCTTGCATGCTTCAGGTAAGCCAACCATTGAAGTGGTCTTTACTGTCCTCCATGCCGGCGGTAAATTTGGTCAAGGTGGTTATAAGTCGGCTGGTGGTCTTCACGGGGTAGGGGCTTCAGTGGTCAATGCGCTCTCTACTTGGGTGCAGGTTGAGGTGGACCGTGATGGCTATACCTATCAAATGCGTTTTGAGAATGGGGGCGTGCCGGTTACTAAACTCATTAAGACTAAGAACTCCAACAAGTCTAAACATGGAACTACCGTGCATTTTATGCCGGATAGCAAGATTTTTGGCCATGCTAGCATAAACAGTGAGACGATTGCAGAACGTTTGCGTGAGTCTGCCTTTCTGCTTAAGGACCTAACGATTGAACTAATCGATGAGCGTATTGATTATCATGAGGTCTTCCACTTCAGCCAAGGTCTGATTGACTTCATTACTTATTTAAATGAAGAGAAAGATACCCTTGGAGATATCGCTGGTTTTGCTGGTGAGGTTGAGGGCTTTGAAATTGATTTTGCCTTTCAATATAATGATGGCTATTCTGAGACCATTCTATCCTTCGCCAATAATGTTCGCACAGGTGGCGGGGGGACCCATGAAGTTGGGATGAAGACCGGCATGACTAAAGCCTTCAATGACTATGCACGTAAGGTGGGACTGCTCAAAGATAAGGATAAGAACTTAGAAGGTTCAGATGTCAGAGAAGGGCTAACGGCGGTTATTTCGCTACGTATTCCTGAGGAATACCTGCAATTCGAAGGTCAAACCAAGGAAAAACTTGGAACGCCTAAGGCGCGCCCACTGGTAGAAAACTTCGTTAACGAAAAAATGACGGCCTATCTCAATGAGAATGGCAACTTCTCTCAGATGATTCTGCGTAAGGCCATTAAGGCCAGAGAAACGCGCGAAGCGGCGCGTAAGGCTCGTGACGCGGCGCGATCTGGTTCTAAGAAGCAGGCCCAAGAACGAGCAATTTCCGGTAAATTAACTAAGGCTCAATCAAAGGATTCCAGCAAGAACGAACTCTACCTAGTCGAAGGTGACTCTGCTGGTGGTTCAGCTAAGCTTGGCCGAAATCGCCAGTATCAAGCCATCCTGCCACTTCGCGGTAAGGTCATCAACACCGAAAAAGCGTCTATGCAAGATATCCTTAAAAACGAGGAAATCAATACCATGATTTATACCATCGGGGCTGGAGTAGGGGCAGATTTTGACCTAGAGTCGGTTAACTACAACAAAGTCATTATCATGACCGACGCGGACACGGATGGTGCCCACATTCAAGTCTTACTCTTAACTTTCTTCTACCGTTATATGAAGCCCTTGTTAGAAGCGGGCAAGGTCTATTTAGCTATGCCGCCACTCTTCAAAATATCTAAAGGATCAGGTAAGAAGCAAGTGGTGGAATATGCCTGGACAGATGAAGAATTAGCCAGCAAAATTGCCAAAGTTGGCAAAGGCTATGTTCTACAACGCTATAAAGGTCTTGGGGAAATGAATGCCGACCAGCTATGGGATACTACCATGAACCCAGAAACCCGTCTATTGATTCGTGTCACGATTGATGATGGGGCACGCGCGGAACGCCGATTGACTACCTTGATGGGTAATAAGGTAGAACCACGACGTAAGTGGATTGAGCGTCATGTCAGCTTTACGCTAGATACAGAAGACTCAATTCTGGAAATGTCGCAAGGGCAAGAATCCAGTCATGCCCATCATGAAAGTTTAGTCAAACAACAAGATGCGCGTCAAGAAGCCCAAGGGCCTGAGTTAATTGCTCAGGATTCCGGTGAATTTTCACTCTTTAATGATGAGGAGGTCTAA\n",
      ">OMX_gene_9736211078bd74005ee0e4b9f8ac7fea|Thiamine pyrophosphokinase\n",
      "GTGGCAACAGCATGTGTCATTGTCTGTGGGGGTGGACCTAATCCAGCCCTTGATCAGATTGAAAATTTAATTCAAGCCTATGACCAAGTCTATTTTGTAGGGGCTGATCGTGGAGCCTTAAGATTAGTCAGAGCAGGCTATGTGCTGGATATGGCCTTGGGCGACTTTGATTCGGTGTCGGAAGAAGAGCGCCAAGTTATTGAGGCACATAGTCAGGAATTTCAAGCCTTTCCTAGCGAGAAGGACGATACCGATGGCCATTTGGCTTTGGACATGGCCATGACCCGCTGGCCGGAGGCAGATTATGTGGCGCTTGGTTTTCTAGGTGAAAGGGGCGGGCGGCTGGACCATTTATTGGCCAATATTTGGCTGGCCCATCAGCCACGCTTCCAAGCAGGTTTGTCTCGTCTTACCTTGCTGGAGGCTCACCACAAGGTGCGTTTCTTAAAGCCTGGCCACCATGTCTTGGCCTACGAGCCCTGTCTCTATCTGTCTGTCATTAGCCTGACACCAGTTCAAGGTCTGACCATTCAAGGCGCCAAGTACACCTTGCCAGCAACGGATTATGCTAGTCCCCAATCTCTCATTAGCAATGAATACAAAGCCAGTCAGGAGCCTGTGGAAATAGCCTTTGAGTCGGGTCTGGTCATGATTTTCTGGGTCAATCAAGTGTAA\n",
      ">OMX_gene_1faecc60aa8e96d69194feb11e043e07|hypothetical protein\n",
      "GTGCGTGATTGCTCCAGTGATAGGTCGCGCATGACAATCATCATGAAAATTATCCTAACTATCTTGTTTATTGTCCAAATAATTTTATCGCTTTATCTAGCATATCTTACGAAGAAGGCTAATAAGCTAGACGCTGAAATTCAGGCATTAAAAGAAGAAGCTGAACATAAAAAACTAACATAA\n",
      ">OMX_gene_1984f6e62eac007041cb8c3944cc94dd|hypothetical protein\n",
      "ATGGAAATTGGTGAAGCTCTATATTATTATCGTAAAAAATTAGGCCTAACAATGGAAGAAATGTCCGTCGGTATCGTGACTCCTTCGTTTTACTCGAAGGTAGAAAAAGGTATCCACCGTATTTCAGCTGAAGATTTATTTAATATTCTTAATACACATGGCATTGATATCACGAAATTTGTAAGATCTGTTAATATTTCAAGCGATTCACTTGGTTTTGATCGTGCGCAGCATCAAATTCTTCAATACTATACACGCTATCAAAGTCAAAATCTAATTCAGTTGAAAAGTCAATTTCAAGGTGATAATAGTCTTAATCAACTTGAAAAAGATTTACTTACGGCAATTGTTGATGTTTATCTGGCCGACTTAAACGATGATATATCCATGGTTGCAGAAAATACCAAACATTTTCTGCAAGATAAGCTTTTCAACGCTGAAAACTGGGATAGCTATAAATTATCTTTATATACTAATATTATGGATTTATATGACCTAGAAGCTAACCGTCAAATGATTTTTTCTATACTTCGAAAAAATCTTGATGCTTATACAAGTAAACAACGAATGATGATATTAGCAATTCTAAACAATTTAATTTATACTTGTATCAGAGAGAATGAAGATGAATTAGCTCGCTACTGTCTAACAATCATAAATAAAGAAGTTACTTTATACGAAAATCTTCCAGAAAAAATACATGCGCTATTTTACCAAGAACTATTAGCCTATCGAGCTACTCCACACTCTTTACATGTAGATAAAATTGAACGCATCATTGATTCTCTTAGTCTATATGGGCTCGAGGAGACTAGTCATCAATTTCGGAAATTCTATGAAGAAAACAAAAGCTGTGAATGA\n",
      ">OMX_gene_90b19bd2ed080a5dc98981ffdf4c790e|DNA topoisomerase 4 subunit A\n",
      "ATGAGCCAAGAAATGATTCAAGAATTAAGCTTTGCAGATGTGATTGGTGATCGCTTTGGTCGTTATTCCAAGTACATCATTCAAGACCGGGCCTTGCCAGATATTCGAGACGGTCTCAAACCGGTTCAACGCCGGATTCTATACGCTATGTATCGTGACCGGAATACAGCCGACAATCCTTACCGTAAGTCCGCTAAGACGGTCGGTAATGTCATCGGTAACTATCACCCTCATGGGGACTCTTCTGTCTATGAAGCCATGGTCCGCATGAGTCAAGACTGGAAGTTGCGCAATCCTCTGATTGATATGCACGGGAATAATGGTTCCATGGATGGGGACCCAGCCGCGGCTATGCGTTATACCGAAGCCCGCCTGTCACCTATTGCGGCTCAGTTACTGCGTGATATTAAGCAAGAAACTGTTGATTTTATCCTTAACTTCGATGATACGGAAGAGGAGCCAACGGTTCTACCAGCACGTTTCCCAAATCTCCTAGTCAATGGGGCAACAGGGATTTCAGCTGGTTACGCCACTGAAATTCCCCCTCATAATCTAGGTGAAATTATTGATGCCGTCATCTATCTCTTAACCCACAAGCGTCCTAAGTTAGAGGAATTGTTGGAGTTGGTGCCGGGCCCTGACTTCCCTACGGGAGCCATTATTCAAGGTATAGATGCCATTCAACAGGCCTATAAGACAGGCCAAGGTAAGATTACCTTAGTTTCGCAAACTGACATTGAAAGTCTAAAAGGTGGGAAAAGTCAGATTGTGGTGACTGAGCTACCATACGAGGTCAATAAGAGTAAACTCATTCAACGTTTGGACGAAATTCGCATTCAGCGTAAGGTAGAGGGTATCGCAGATGTTCGCGATGAATCTGACCGTAATGGAGTGCGTCTGGTAGTCGAACTTAAGCGTGACGTTGACGCCAAAGGGATTCTGACCTATCTTCTGAAACATACTGACTTGCAAGTGAACTACCATTTTAACATGGTCGCGATTAACAAAAGACGACCTGAACTGGTTAACTTACAAACCATGTTGGAAGCCTATATCAGTCACCAGCAGGAAGTACTAACCCGTCGCACTCAGTATGATTTGGCTAATGACCAAAAACGTCTACATATTGTAGATGGTTTGATTCGGGTAGTCTCCATTCTGGATGAAGTCATTGCCACTATTCGTCGCTCTGATAATAAGCAGGATGCTAAGGAAAACTTAGTAGCTGAGTTTGATTTTTCTTTAGAACAAGCCGAAGCCATTGTGTCCTTACAACTCTATCGTTTGACAAATACCGATATTACGGCCTTGCAACAGGAACGTTTGGAATTGAATGAGCGGATTCTGATGTATCAAAATATCCTATCCAATCCTGAAATCCTCAATAAGGTTCTGATTAATGAACTTAAAGCTATCAAAAAAGACTTTGCGACACCGCGTCGTAGCCAAATACAAGCAGAGGTTCAAAGCCTAGAAATCGATACTCATATTCTGATTCCAGACGAGCAAGTTATGGTTTCTTTGACCAAGGAAGGCTATATGAAGCGTACTAGTATGCGTTCCTTTGCCTCATCTGATCTAAATAGTTTAGGCTTACGTGACTTTGACTATCCAATTTTTGTCGAGGAACTCAGTACACATCAAGAATTAGTCATTATCACTTCAAAGGGGAATTATATCCATATTCCGGTGCATGAACTGCCTGAAATTAAATGGAAGGATCTTGGGGTCCATCTGTCCCAAAACTATCAACTTCAAGATGGTGAACGCTTTGTTAAGGCTTTTGTGGCAAGCCAGGAGGACCATAAACTAATCTTGGCTACTAAGGCGGGTATGATTAAGCAGACGCCATTATCGGCCTTCACGACTTACCGGTCTTATAAAACGCGGACGGCAAAGGCTATGAATCTGCTAGACGATCAAGATGAAGTAGTAGCAGCGGAATGCCTTAAAGCTGGTCAAAATTATGAGGTCGTCTTATTGACCAAACGCTCTTATTGCTTACGTTACTCAGCTGACTTGGTATCAGAAATGGGCCTGAAAGCCAAAGGGGTAACAGCAATTAAGTTGAAAAAAGAAGACCAGGTGGTTGCCTGCTTAGTGGTTAACCAAGAAGCAAAACGGCCACAACTCTTTGCCTTGACTCAGCGAGGAAATGTGAAACGCAGTGATTTAACTGTCATACCTGAACTGGGGCGTGGCTCGCGTGGCGTCCTCTTACTAAAAGAATTAAAAACCAATCCGCATCAATTATTGAAAGTCCTAGCCCTTGATAAAGCGCAGCACCAAGTCTGTCTTTTAGGGGATACAGGACAAAGTGTGGTCTTTCCAGCTAGTGAGATTCCACTGTCGGATCGCCTTGCTAACGGCTCGCAAGCGCCTGATTTAGCCAAATTGGGTAATGTCTTAGACTGTTATTTAGTCTTGGACATCCAATCTCAGGCTTCAGAAGCAAATTAG\n",
      ">OMX_gene_cfecbc0f40e063e3bd08db30e02ab856|30S ribosomal protein S19\n",
      "GTGAGTCGTAGTTTGAAAAAAGGACCTTTCTGTGATGCGCACTTAATGAAAAAAGTGGAAGAGCAAGCAGAAAGCACAAAGAAACAAGTTATTAAAACCTGGTCACGTCGTTCAACCATCTTCCCTAACTTCATTGGTTTAACCATTGCCGTTTATGATGGCCGCAAGCACGTGCCTGTATATGTTCAAGAAGATATGGTAGGTCACAAATTAGGTGAATTCGTACCAACTCGTACTTATAAAGGTCACGCAGCTGACGACAAGAAATCTAAGAAACGCTAA\n"
     ]
    }
   ],
   "source": [
    "gene_results_fasta = genes.results(type='fasta')\n",
    "print(gene_results_fasta)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "colab_type": "text",
    "id": "ccFSaDiIk5qh"
   },
   "source": [
    "### Get GO-terms and IPR-codes by Gene"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 24,
   "metadata": {
    "colab": {
     "base_uri": "https://localhost:8080/",
     "height": 515
    },
    "colab_type": "code",
    "id": "iUXH8rwNk6Qg",
    "outputId": "c885ae54-21ae-4d72-91a3-3da2b7ddb46e"
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>id</th>\n",
       "      <th>name</th>\n",
       "      <th>type</th>\n",
       "      <th>category</th>\n",
       "      <th>status</th>\n",
       "      <th>omx_creation_ts</th>\n",
       "      <th>omx_modified_ts</th>\n",
       "      <th>classification</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>GO:0005737</td>\n",
       "      <td>[cytoplasm]</td>\n",
       "      <td>go</td>\n",
       "      <td>CELLULAR_COMPONENT</td>\n",
       "      <td>active</td>\n",
       "      <td>2018-11-30T13:04:11.000Z</td>\n",
       "      <td>2020-08-14T12:02:18.000Z</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>GO:0006807</td>\n",
       "      <td>[nitrogen compound metabolic process]</td>\n",
       "      <td>go</td>\n",
       "      <td>BIOLOGICAL_PROCESS</td>\n",
       "      <td>active</td>\n",
       "      <td>2018-11-30T13:04:11.000Z</td>\n",
       "      <td>2020-08-14T12:02:18.000Z</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>GO:0003824</td>\n",
       "      <td>[catalytic activity]</td>\n",
       "      <td>go</td>\n",
       "      <td>MOLECULAR_FUNCTION</td>\n",
       "      <td>active</td>\n",
       "      <td>2018-11-30T13:04:11.000Z</td>\n",
       "      <td>2020-08-14T12:02:18.000Z</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>GO:0006542</td>\n",
       "      <td>[glutamine biosynthetic process]</td>\n",
       "      <td>go</td>\n",
       "      <td>BIOLOGICAL_PROCESS</td>\n",
       "      <td>active</td>\n",
       "      <td>2018-11-30T13:04:11.000Z</td>\n",
       "      <td>2020-08-14T12:02:18.000Z</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>GO:0009399</td>\n",
       "      <td>[nitrogen fixation]</td>\n",
       "      <td>go</td>\n",
       "      <td>BIOLOGICAL_PROCESS</td>\n",
       "      <td>active</td>\n",
       "      <td>2018-11-30T13:04:11.000Z</td>\n",
       "      <td>2020-08-14T11:35:49.000Z</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>GO:0004356</td>\n",
       "      <td>[glutamate-ammonia ligase activity]</td>\n",
       "      <td>go</td>\n",
       "      <td>MOLECULAR_FUNCTION</td>\n",
       "      <td>active</td>\n",
       "      <td>2018-11-30T13:04:11.000Z</td>\n",
       "      <td>2020-08-14T12:02:18.000Z</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "           id                                   name type            category  \\\n",
       "0  GO:0005737                            [cytoplasm]   go  CELLULAR_COMPONENT   \n",
       "1  GO:0006807  [nitrogen compound metabolic process]   go  BIOLOGICAL_PROCESS   \n",
       "2  GO:0003824                   [catalytic activity]   go  MOLECULAR_FUNCTION   \n",
       "3  GO:0006542       [glutamine biosynthetic process]   go  BIOLOGICAL_PROCESS   \n",
       "4  GO:0009399                    [nitrogen fixation]   go  BIOLOGICAL_PROCESS   \n",
       "5  GO:0004356    [glutamate-ammonia ligase activity]   go  MOLECULAR_FUNCTION   \n",
       "\n",
       "   status           omx_creation_ts           omx_modified_ts classification  \n",
       "0  active  2018-11-30T13:04:11.000Z  2020-08-14T12:02:18.000Z     [bacteria]  \n",
       "1  active  2018-11-30T13:04:11.000Z  2020-08-14T12:02:18.000Z     [bacteria]  \n",
       "2  active  2018-11-30T13:04:11.000Z  2020-08-14T12:02:18.000Z     [bacteria]  \n",
       "3  active  2018-11-30T13:04:11.000Z  2020-08-14T12:02:18.000Z     [bacteria]  \n",
       "4  active  2018-11-30T13:04:11.000Z  2020-08-14T11:35:49.000Z     [bacteria]  \n",
       "5  active  2018-11-30T13:04:11.000Z  2020-08-14T12:02:18.000Z     [bacteria]  "
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>id</th>\n",
       "      <th>name</th>\n",
       "      <th>type</th>\n",
       "      <th>category</th>\n",
       "      <th>description</th>\n",
       "      <th>status</th>\n",
       "      <th>omx_creation_ts</th>\n",
       "      <th>omx_modified_ts</th>\n",
       "      <th>classification</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>IPR001637</td>\n",
       "      <td>[Gln_synth_I_adenylation_site]</td>\n",
       "      <td>ipr</td>\n",
       "      <td>CONSERVED_SITE</td>\n",
       "      <td>Glutamine synthetase class-I, adenylation site</td>\n",
       "      <td>active</td>\n",
       "      <td>2019-07-18T16:02:34.000Z</td>\n",
       "      <td>2020-08-14T11:52:41.000Z</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>IPR008147</td>\n",
       "      <td>[Gln_synt_b-grasp]</td>\n",
       "      <td>ipr</td>\n",
       "      <td>DOMAIN</td>\n",
       "      <td>Glutamine synthetase, beta-Grasp domain</td>\n",
       "      <td>active</td>\n",
       "      <td>2019-07-18T16:02:34.000Z</td>\n",
       "      <td>2020-08-14T11:52:45.000Z</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>IPR008146</td>\n",
       "      <td>[Gln_synth_cat_dom]</td>\n",
       "      <td>ipr</td>\n",
       "      <td>DOMAIN</td>\n",
       "      <td>Glutamine synthetase, catalytic domain</td>\n",
       "      <td>active</td>\n",
       "      <td>2019-07-18T16:02:34.000Z</td>\n",
       "      <td>2020-08-14T12:08:57.000Z</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>IPR014746</td>\n",
       "      <td>[Gln_synth/guanido_kin_cat_dom]</td>\n",
       "      <td>ipr</td>\n",
       "      <td>HOMOLOGOUS_SUPERFAMILY</td>\n",
       "      <td>Glutamine synthetase/guanido kinase, catalytic...</td>\n",
       "      <td>active</td>\n",
       "      <td>2019-07-18T16:02:34.000Z</td>\n",
       "      <td>2020-08-14T12:09:00.000Z</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>IPR027302</td>\n",
       "      <td>[Gln_synth_N_conserv_site]</td>\n",
       "      <td>ipr</td>\n",
       "      <td>CONSERVED_SITE</td>\n",
       "      <td>Glutamine synthetase, N-terminal conserved site</td>\n",
       "      <td>active</td>\n",
       "      <td>2019-07-18T16:02:34.000Z</td>\n",
       "      <td>2020-08-14T11:52:52.000Z</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>IPR036651</td>\n",
       "      <td>[Gln_synt_N]</td>\n",
       "      <td>ipr</td>\n",
       "      <td>HOMOLOGOUS_SUPERFAMILY</td>\n",
       "      <td>Glutamine synthetase, N-terminal domain superf...</td>\n",
       "      <td>active</td>\n",
       "      <td>2019-07-18T16:02:34.000Z</td>\n",
       "      <td>2020-08-14T12:09:03.000Z</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6</th>\n",
       "      <td>IPR004809</td>\n",
       "      <td>[Gln_synth_I]</td>\n",
       "      <td>ipr</td>\n",
       "      <td>FAMILY</td>\n",
       "      <td>Glutamine synthetase type I</td>\n",
       "      <td>active</td>\n",
       "      <td>2019-07-18T16:02:34.000Z</td>\n",
       "      <td>2020-08-14T11:52:44.000Z</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7</th>\n",
       "      <td>IPR027303</td>\n",
       "      <td>[Gln_synth_gly_rich_site]</td>\n",
       "      <td>ipr</td>\n",
       "      <td>CONSERVED_SITE</td>\n",
       "      <td>Glutamine synthetase, glycine-rich site</td>\n",
       "      <td>active</td>\n",
       "      <td>2019-07-18T16:02:34.000Z</td>\n",
       "      <td>2020-08-14T12:09:01.000Z</td>\n",
       "      <td>[bacteria]</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "          id                             name type                category  \\\n",
       "0  IPR001637   [Gln_synth_I_adenylation_site]  ipr          CONSERVED_SITE   \n",
       "1  IPR008147               [Gln_synt_b-grasp]  ipr                  DOMAIN   \n",
       "2  IPR008146              [Gln_synth_cat_dom]  ipr                  DOMAIN   \n",
       "3  IPR014746  [Gln_synth/guanido_kin_cat_dom]  ipr  HOMOLOGOUS_SUPERFAMILY   \n",
       "4  IPR027302       [Gln_synth_N_conserv_site]  ipr          CONSERVED_SITE   \n",
       "5  IPR036651                     [Gln_synt_N]  ipr  HOMOLOGOUS_SUPERFAMILY   \n",
       "6  IPR004809                    [Gln_synth_I]  ipr                  FAMILY   \n",
       "7  IPR027303        [Gln_synth_gly_rich_site]  ipr          CONSERVED_SITE   \n",
       "\n",
       "                                         description  status  \\\n",
       "0     Glutamine synthetase class-I, adenylation site  active   \n",
       "1            Glutamine synthetase, beta-Grasp domain  active   \n",
       "2             Glutamine synthetase, catalytic domain  active   \n",
       "3  Glutamine synthetase/guanido kinase, catalytic...  active   \n",
       "4    Glutamine synthetase, N-terminal conserved site  active   \n",
       "5  Glutamine synthetase, N-terminal domain superf...  active   \n",
       "6                        Glutamine synthetase type I  active   \n",
       "7            Glutamine synthetase, glycine-rich site  active   \n",
       "\n",
       "            omx_creation_ts           omx_modified_ts classification  \n",
       "0  2019-07-18T16:02:34.000Z  2020-08-14T11:52:41.000Z     [bacteria]  \n",
       "1  2019-07-18T16:02:34.000Z  2020-08-14T11:52:45.000Z     [bacteria]  \n",
       "2  2019-07-18T16:02:34.000Z  2020-08-14T12:08:57.000Z     [bacteria]  \n",
       "3  2019-07-18T16:02:34.000Z  2020-08-14T12:09:00.000Z     [bacteria]  \n",
       "4  2019-07-18T16:02:34.000Z  2020-08-14T11:52:52.000Z     [bacteria]  \n",
       "5  2019-07-18T16:02:34.000Z  2020-08-14T12:09:03.000Z     [bacteria]  \n",
       "6  2019-07-18T16:02:34.000Z  2020-08-14T11:52:44.000Z     [bacteria]  \n",
       "7  2019-07-18T16:02:34.000Z  2020-08-14T12:09:01.000Z     [bacteria]  "
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "genes = omx.genes(ids='921db25406f80e09c8f78dd915f355aa')\n",
    "genes = genes.results()\n",
    "\n",
    "gene = genes[0]\n",
    "# print(gene)\n",
    "\n",
    "display(gene.go().results(type='df'))\n",
    "display(gene.ipr().results(type='df'))"
   ]
  }
 ],
 "metadata": {
  "colab": {
   "name": "Getting Started with OMXware.ipynb",
   "provenance": [],
   "version": "0.3.2"
  },
  "kernelspec": {
   "display_name": "Python 3",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.7.5"
  }
 },
 "nbformat": 4,
 "nbformat_minor": 1
}