diff --git a/constraints.txt b/constraints.txt
index ef044b34..956d0c8e 100644
--- a/constraints.txt
+++ b/constraints.txt
@@ -18,7 +18,7 @@ beautifulsoup4==4.12.2
 bidict==0.22.1
 bioregistry==0.6.99
 bleach==6.0.0
-bmt==1.0.11
+bmt==1.0.12
 cachetools==5.3.0
 certifi==2022.12.7
 cffi==1.15.1
@@ -82,7 +82,7 @@ imagesize==1.4.1
 importlib-metadata==6.6.0
 iniconfig==2.0.0
 ipykernel==6.22.0
-ipython==8.12.0
+ipython==8.13.1
 ipython-genutils==0.2.0
 ipywidgets==8.0.6
 isodate==0.6.1
@@ -122,7 +122,7 @@ kgx==2.0.2
 kiwisolver==1.4.4
 lark==1.1.5
 lightrdf==0.3.1
-linkml==1.5.0
+linkml==1.5.1
 linkml-dataops==0.1.0
 linkml-renderer==0.1.2
 linkml-runtime==1.5.1
@@ -140,7 +140,7 @@ mdurl==0.1.2
 mergedeep==1.3.4
 mistune==2.0.5
 mkdocs==1.4.2
-mkdocs-material==9.1.7
+mkdocs-material==9.1.8
 mkdocs-material-extensions==1.1.1
 mkdocs-mermaid2-plugin==0.6.0
 more-click==0.1.2
@@ -149,22 +149,22 @@ multidict==6.0.4
 mypy==1.2.0
 mypy-extensions==1.0.0
 myst-parser==1.0.0
-nbclassic==0.5.5
-nbclient==0.7.3
+nbclassic==0.5.6
+nbclient==0.7.4
 nbconvert==7.3.1
 nbformat==5.8.0
 ndex2==3.5.1
-neo4j==4.4.10
+neo4j==4.4.11
 nest-asyncio==1.5.6
 networkx==2.8.8
 notebook==6.5.4
-notebook_shim==0.2.2
+notebook_shim==0.2.3
 numpy==1.24.3
 nxontology==0.4.1
 oaklib==0.5.3
 oauthlib==3.2.2
 ols-client==0.1.3
-ontobio==2.8.4
+ontobio==2.8.5
 ontodev-cogs==0.3.3
 ontodev-gizmos==0.3.2
 ontoportal-client==0.0.3
@@ -180,7 +180,7 @@ pexpect==4.8.0
 pickleshare==0.7.5
 Pillow==9.5.0
 pkginfo==1.9.6
-platformdirs==3.2.0
+platformdirs==3.5.0
 plotly==5.14.1
 pluggy==1.0.0
 ply==3.11
@@ -211,7 +211,7 @@ pyrsistent==0.19.3
 PyShEx==0.8.1
 PyShExC==0.9.1
 pysolr==3.9.0
-pyspellchecker==0.7.1
+pyspellchecker==0.7.2
 pystow==0.5.0
 pytest==7.3.1
 pytest-logging==2015.11.4
@@ -231,23 +231,23 @@ rdflib-shim==1.0.3
 readme-renderer==37.3
 recommonmark==0.7.1
 regex==2023.3.23
-requests==2.28.2
+requests==2.29.0
 requests-oauthlib==1.3.1
-requests-toolbelt==0.10.1
+requests-toolbelt==1.0.0
 rfc3339-validator==0.1.4
 rfc3986==2.0.0
 rfc3986-validator==0.1.1
 rfc3987==1.3.8
-rich==13.3.4
+rich==13.3.5
 rsa==4.9
 ruamel.yaml==0.17.21
 ruamel.yaml.clib==0.2.7
-rustsim==0.1.8
+rustsim==0.1.10
 scipy==1.10.1
 seaborn==0.12.2
 SecretStorage==3.3.3
 semsql==0.3.2
-Send2Trash==1.8.0
+Send2Trash==1.8.2
 ShExJSG==0.8.2
 six==1.16.0
 sniffio==1.3.0
@@ -256,7 +256,7 @@ sortedcontainers==2.4.0
 soupsieve==2.4.1
 sparqlslurper==0.5.1
 SPARQLWrapper==1.8.5
-Sphinx==6.2.0
+Sphinx==6.2.1
 sphinx-click==4.4.0
 sphinx-rtd-theme==1.2.0
 sphinxcontrib-applehelp==1.0.4
@@ -266,9 +266,9 @@ sphinxcontrib-jquery==4.1
 sphinxcontrib-jsmath==1.0.1
 sphinxcontrib-qthelp==1.0.3
 sphinxcontrib-serializinghtml==1.1.5
-SQLAlchemy==1.4.47
+SQLAlchemy==1.4.48
 SQLAlchemy-Utils==0.38.3
-sssom==0.3.29
+sssom==0.3.30
 sssom-schema==0.11.0
 stack-data==0.6.2
 stringcase==1.2.0
@@ -293,7 +293,7 @@ uri-template==1.2.0
 uritemplate==4.1.1
 urllib3==1.26.15
 validators==0.20.0
-virtualenv==20.22.0
+virtualenv==20.23.0
 watchdog==3.0.0
 wcwidth==0.2.6
 webcolors==1.13
@@ -302,5 +302,5 @@ websocket-client==1.5.1
 widgetsnbextension==4.0.7
 wrapt==1.15.0
 yamldown==0.1.8
-yarl==1.9.1
+yarl==1.9.2
 zipp==3.15.0