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Get STRAND INFO in the vcf output #306

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Sreelekshmi-291 opened this issue Mar 24, 2023 · 0 comments
Open

Get STRAND INFO in the vcf output #306

Sreelekshmi-291 opened this issue Mar 24, 2023 · 0 comments

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@Sreelekshmi-291
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Sreelekshmi-291 commented Mar 24, 2023 •
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Hi
Why does manta not provide STRAND INFO in the vcf?

Manta
image

Lumpy
image

As seen, Lumpy gives the strand information (STRANDS=+-:6), whereas Manta does not. Is there any extra argument I can add during the vcf generation, or is it impossible to get the info?

Thanks
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