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environment.yml
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name: protein_reconstruction
channels:
- conda-forge
- astra-toolbox/label/dev
- anaconda
- defaults
dependencies:
- python>=3.6
- _libgcc_mutex=0.1=main
- astra-toolbox=1.9
- attrs=19.3.0=py_0
- backcall=0.1.0=py36_0
- blas=1.0=mkl
- bleach=3.1.0=py36_0
- ca-certificates=2019.9.11=hecc5488_0
- certifi=2019.9.11=py36_0
- cffi=1.13.2=py36h8022711_0
- chardet=3.0.4=py36_1003
- cloudpickle=1.2.2=py_1
- configargparse=0.14.0=py36_0
- cryptography=2.8=py36h72c5cf5_0
- cudatoolkit=10.0.130=0
- cudnn=7.6.4=cuda10.0_0
- cycler=0.10.0=py_2
- cytoolz=0.10.1=py36h516909a_0
- dask-core=2.8.1=py_0
- dbus=1.13.6=he372182_0
- decorator=4.4.1=py_0
- defusedxml=0.6.0=py_0
- entrypoints=0.3=py36_0
- expat=2.2.5=he1b5a44_1004
- fontconfig=2.13.1=he4413a7_1000
- freetype=2.10.0=he983fc9_1
- gettext=0.19.8.1=hc5be6a0_1002
- glib=2.58.3=py36h6f030ca_1002
- gmp=6.1.2=h6c8ec71_1
- gst-plugins-base=1.14.5=h0935bb2_0
- gstreamer=1.14.5=h36ae1b5_0
- hdf5=1.10.4=hb1b8bf9_0
- icu=58.2=hf484d3e_1000
- idna=2.8=py36_1000
- imageio=2.6.1=py36_0
- importlib_metadata=0.23=py36_0
- intel-openmp=2019.4=243
- ipydatawidgets=4.0.1=py_0
- ipykernel=5.1.3=py36h39e3cac_0
- ipyscales=0.3.0=py_0
- ipython=7.9.0=py36h39e3cac_0
- ipython_genutils=0.2.0=py36_0
- ipyvolume
- ipywebrtc=0.5.0=py36_0
- ipywidgets=7.5.1=py_0
- jedi=0.15.1=py36_0
- jinja2=2.10.3=py_0
- joblib=0.14.0=py_0
- jpeg=9c=h14c3975_1001
- json5=0.8.5=py_0
- jsonschema=3.2.0=py36_0
- jupyter=1.0.0=py36_7
- jupyter_client=5.3.4=py36_0
- jupyter_console=6.0.0=py36_0
- jupyter_core=4.6.1=py36_0
- jupyterlab=1.2.3=py_0
- jupyterlab_server=1.0.6=py_0
- kiwisolver=1.1.0=py36hc9558a2_0
- libblas=3.8.0=14_mkl
- libcblas=3.8.0=14_mkl
- libedit=3.1.20181209=hc058e9b_0
- libffi=3.2.1=hd88cf55_4
- libgcc-ng=9.1.0=hdf63c60_0
- libgfortran-ng=7.3.0=hdf63c60_0
- libiconv=1.15=h516909a_1005
- liblapack=3.8.0=14_mkl
- libpng=1.6.37=hed695b0_0
- libsodium=1.0.16=h1bed415_0
- libstdcxx-ng=9.1.0=hdf63c60_0
- libtiff=4.1.0=hc3755c2_1
- libuuid=2.32.1=h14c3975_1000
- libxcb=1.13=h14c3975_1002
- libxml2=2.9.9=hea5a465_1
- lz4-c=1.8.3=he1b5a44_1001
- markupsafe=1.1.1=py36h7b6447c_0
- matplotlib=3.1.1=py36h5429711_0
- mistune=0.8.4=py36h7b6447c_0
- mkl=2019.4=243
- mkl-service=2.3.0=py36he904b0f_0
- more-itertools=7.2.0=py36_0
- mrcfile=1.1.2=py_1
- nbconvert=5.6.1=py36_0
- nbformat=4.4.0=py36_0
- ncurses=6.1=he6710b0_1
- networkx=2.4=py_0
- notebook=6.0.2=py36_0
- olefile=0.46=py_0
- openssl=1.1.1d=h516909a_0
- pandas=0.22.0=py36hf484d3e_0
- pandoc=2.2.3.2=0
- pandocfilters=1.4.2=py36_1
- parso=0.5.1=py_0
- patsy=0.5.1=py36_0
- pcre=8.43=he1b5a44_0
- pexpect=4.7.0=py36_0
- pickleshare=0.7.5=py36_0
- pillow=6.2.1=py36h34e0f95_0
- pip=20.0.2=py36_3
- prometheus_client=0.7.1=py_0
- prompt_toolkit=2.0.10=py_0
- pthread-stubs=0.4=h14c3975_1001
- ptyprocess=0.6.0=py36_0
- pycparser=2.19=py36_1
- pygments=2.4.2=py_0
- pyopenssl=19.0.0=py36_0
- pyparsing=2.4.5=py_0
- pyqt=5.9.2=py36hcca6a23_4
- pyrsistent=0.15.6=py36h7b6447c_0
- pysocks=1.7.1=py36_0
- python=3.6.9=h265db76_0
- python-dateutil=2.8.1=py_0
- pythreejs=2.1.1=py_0
- pytz=2019.3=py_0
- pywavelets=1.0.3=py36hdd07704_1
- pyzmq=18.1.0=py36he6710b0_0
- qt=5.9.7=h52cfd70_2
- qtconsole=4.6.0=py_0
- readline=7.0=h7b6447c_5
- requests=2.22.0=py36_1
- scikit-image=0.15.0=py36he6710b0_0
- scikit-learn=0.21.3=py36hd81dba3_0
- scipy=1.4.1
- seaborn=0.9.0=pyh91ea838_1
- send2trash=1.5.0=py36_0
- setuptools=42.0.1=py36_0
- sip=4.19.8=py36hf484d3e_0
- six=1.13.0=py36_0
- sqlite=3.30.1=h7b6447c_0
- statsmodels=0.10.1=py36hdd07704_0
- terminado=0.8.3=py36_0
- testpath=0.4.4=py_0
- tk=8.6.8=hbc83047_0
- toolz=0.10.0=py_0
- tornado=6.0.3=py36h516909a_0
- traitlets=4.3.3=py36_0
- traittypes=0.2.1=py_1
- urllib3=1.25.7=py36_0
- wcwidth=0.1.7=py36_0
- webencodings=0.5.1=py36_1
- wheel=0.33.6=py36_0
- widgetsnbextension=3.5.1=py36_0
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxdmcp=1.1.3=h516909a_0
- xz=5.2.4=h14c3975_4
- zeromq=4.3.1=he6710b0_3
- zipp=0.6.0=py_0
- zlib=1.2.11=h7b6447c_3
- zstd=1.4.4=h3b9ef0a_1
- ghp-import
- pip:
- absl-py==0.8.1
- astor==0.8.0
- cachetools==3.1.1
- gast==0.2.2
- google-auth==1.7.1
- google-auth-oauthlib==0.4.1
- google-pasta==0.1.8
- grpcio==1.25.0
- h5py==2.10.0
- keras-applications==1.0.8
- keras-preprocessing==1.1.0
- markdown==3.1.1
- numba==0.48.0
- oauthlib==3.1.0
- opt-einsum==3.1.0
- protobuf==3.11.0
- pyasn1==0.4.8
- pyasn1-modules==0.2.7
- requests-oauthlib==1.3.0
- rsa==4.0
- tensorflow-gpu
- tensorflow-graphics
- termcolor==1.1.0
- werkzeug==0.16.0
- wrapt
- jupyter-book