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correctly get age group of patients\r\n\r\n* Removed AgeGroupFilter in favor of supporting GetPatientAgeGroup and fixed docstrings\r\n\r\n* Added SampleData compat and dependency\r\n\r\n* Renamed files and fixed docs\r\n\r\n* Fixed documentation and fixed methods for calculating age\r\n\r\n* Added helper function to determine year\r\n\r\n* Started adding first batch of tests\r\n\r\n* Added helpers file\r\n\r\n* Removed entry for SampleHealthData until merge of package occurs\r\n\r\n* Converted this function to internal helper function\r\n\r\n* Added new tests and dependencies\r\n\r\n* Added tests for GetPatientGender, GetPatientAgeGroup, GetPatientRace, and GetDatabasePersonIDs\r\n\r\n* Added ignore for various Julia artifacts\r\n\r\n* Initial drafting of full tutorial\r\n\r\n* Finished initial beginner tutorial\r\n\r\n* Updated README with badges and documentation link\r\n\r\n* Modified footer\r\n\r\n* Updated landing page\r\n\r\n* Reordered pages on sidebar\r\n\r\n* Added todo action to automatically create todos\r\n\r\n* Added todos for issues in getters\r\n\r\n* Removed dependency on HealthSampleData and compat entries\r\n\r\n* Added todosfor multiple tests that need to be created\r\n\r\n* Uncommented test sets for running and added todo for Generators\r\n\r\n* Created test for GetPatientVisits()\r\n\r\n* Created Test for ExecuteAudit()\r\n\r\n* Created test for GetMostRecentVisit\r\n\r\n* updated tests\r\n\r\n* started creating test for GetVisitCondition\r\n\r\n* Changed GetVisitCondition Test\r\n\r\n* created test for VisitFilterPersonIDs\r\n\r\n* Added test for filters.jl\r\n\r\n* Finished tests for filters\r\n\r\n* Added a test step for code coverage\r\n\r\n* Removed VSCode configurations\r\n\r\n* Bumped compat entry for HealthSampleData\r\n\r\n* Removed todos and fixed GenderFilterPersonIDs test\r\n\r\n* Removed unnecessary comments\r\n\r\n* For allowing HealthSampleData to always download sample data\r\n\r\n* Test with adding latest codecoverage version\r\n\r\n* Added code coverage badge icon\r\n\r\nCo-authored-by: TheCedarPrince <jacobszelko@gmail.com>\r\nCo-authored-by: Chinta <vchinta6@icl.gtri.org>\r\n\r\n* Simplify Age Calculations (#27)\r\n\r\n* Added SQL generation for filter statements\r\n\r\n* Removed option for internal DB calculation\r\n\r\n* Fixed GetPatientAgeGroup and added GetDatabaseYearRange and updated docstrings\r\n\r\n* Updated test suite\r\n\r\n* Removed old tests for GetPatientAgeGroup\r\n\r\n* Updated tests for helper functions\r\n\r\n* Added Additional Test Coverage for Getters and Helpers (#28)\r\n\r\n* Updated docstrings for SQL rendering\r\n\r\n* Updated docstrings, formatting, and enforced String returns for SQL dispatches\r\n\r\n* Updated test explanation\r\n\r\n* Added test suite for GetMostRecentConditions and formatted\r\n\r\n* Fix to Docs Deployment (#29)\r\n\r\n* Testing fix for docs deployment\r\n\r\n* Expected the OMOPCDMCohortCreator package to be available\r\n\r\n* Added push preview information and the edit link\r\n\r\n* Fixed deprecation warning\r\n\r\n* Final layout fixes to collapselevel\r\n\r\n* Final fix\r\n\r\n* Update to Beginner Tutorial and Minor Refactor of Tutorials Layout (#30)\r\n\r\n* Configured nesting of tutorial\r\n\r\n* Updated landing page description\r\n\r\n* Broke up tutorial pages\r\n\r\n* Added revamped beginner tutorial\r\n\r\n* Overhaul of Docs (#31)\r\n\r\n* Moved beginner tutorial\r\n\r\n* Added tutorial for R usage\r\n\r\n* Updated index of tutorials\r\n\r\n* Fixed up tutorials index\r\n\r\n* Renamed R tutorial\r\n\r\n* Clarified links for tutorials\r\n\r\n* Julia on the brain\r\n\r\n* Added contributing guide\r\n\r\n* Added contributing guide\r\n\r\n* Updated API exports\r\n\r\n* Revamped overview of package\r\n\r\n* Added the most necessary of all things: emojis :sparkles:\r\n\r\n* Fixed up emojis\r\n\r\n* Fixed up API table of contents\r\n\r\n* Fixed emojis\r\n\r\n* Updated main features of package\r\n\r\n* Removed emoji\r\n\r\n* Updated and fixed Citation file (#32)\r\n\r\n* Expanded CI to test on Windows & OSX and Julia Versions 1, Nightly, and LTS (#35)\r\n\r\n* Tag New Release v2.0.0 (#33)\r\n\r\n* Removed type signatures + fixed docstrings; lowercased table names and columns in prep for OMOPCDM\r\n\r\n* Added TODO's for what tests to write\r\n\r\n* Removed type signatures and added TODO for futures\r\n\r\n* Removed type signatures\r\n\r\n* Removed type signatures\r\n\r\n* Raised proposal to CDM maintainers and am awaiting feedback before moving forward on this\r\n\r\n* Removed type signatures and fixed bug with GetPatientVisits to correctly return patient visits\r\n\r\n* Changed docstring in StateFilterPersonIDs and enforced uppercasing for state abbreviations; added exports\r\n\r\n* Added and updated CHANGELOG\r\n\r\n* Bumped project version numbers for new release\r\n\r\n* Removed as it was an early testing prototype file\r\n\r\n* Began revising tutorial documentation\r\n\r\n* Removed Manifest file for package\r\n\r\n* Added Dates and TimeZones deps for managing age groups\r\n\r\n* Disallowed some exports and created new function for generating defaults\r\n\r\n* Added new deps Dates and TimeZones for time management\r\n\r\n* Began refactoring of GetPatientAgeGroup\r\n\r\n* Refactored GetPatientAgeGroup to correctly get age group of patients\r\n\r\n* Removed AgeGroupFilter in favor of supporting GetPatientAgeGroup and fixed docstrings\r\n\r\n* Added SampleData compat and dependency\r\n\r\n* Renamed files and fixed docs\r\n\r\n* Fixed documentation and fixed methods for calculating age\r\n\r\n* Added helper function to determine year\r\n\r\n* Started adding first batch of tests\r\n\r\n* Added helpers file\r\n\r\n* Removed entry for SampleHealthData until merge of package occurs\r\n\r\n* Converted this function to internal helper function\r\n\r\n* Added new tests and dependencies\r\n\r\n* Added tests for GetPatientGender, GetPatientAgeGroup, GetPatientRace, and GetDatabasePersonIDs\r\n\r\n* Added ignore for various Julia artifacts\r\n\r\n* Initial drafting of full tutorial\r\n\r\n* Finished initial beginner tutorial\r\n\r\n* Updated README with badges and documentation link\r\n\r\n* Modified footer\r\n\r\n* Updated landing page\r\n\r\n* Reordered pages on sidebar\r\n\r\n* Updated changelog for new release\r\n\r\n* Beginning draft of submission\r\n\r\n* Creating header affiliations\r\n\r\n* Autogenerated or compiled files\r\n\r\n* Ruby routine for generating header.tex\r\n\r\n* Removed Memoization dependency for user flexibility\r\n\r\n* Added dispatches to render SQL; found bug in GetPatientAgeGroup\r\n\r\n* Added get function for ethnicity\r\n\r\n* Cherry picking some files to resolve conflicts\r\n\r\n* Initial Tests for Getters, Filters, and Executors (#24)\r\n\r\n* Version 0.1.0 Release (#4)\r\n\r\n* Removed type signatures + fixed docstrings; lowercased table names and columns in prep for OMOPCDM\r\n\r\n* Added TODO's for what tests to write\r\n\r\n* Removed type signatures and added TODO for futures\r\n\r\n* Removed type signatures\r\n\r\n* Removed type signatures\r\n\r\n* Raised proposal to CDM maintainers and am awaiting feedback before moving forward on this\r\n\r\n* Removed type signatures and fixed bug with GetPatientVisits to correctly return patient visits\r\n\r\n* Changed docstring in StateFilterPersonIDs and enforced uppercasing for state abbreviations; added exports\r\n\r\n* Added and updated CHANGELOG\r\n\r\n* Bumped project version numbers for new release\r\n\r\n* Removed as it was an early testing prototype file\r\n\r\n* Began revising tutorial documentation\r\n\r\n* Removed Manifest file for package\r\n\r\n* Added Dates and TimeZones deps for managing age groups\r\n\r\n* Disallowed some exports and created new function for generating defaults\r\n\r\n* Added new deps Dates and TimeZones for time management\r\n\r\n* Began refactoring of GetPatientAgeGroup\r\n\r\n* Refactored GetPatientAgeGroup to correctly get age group of patients\r\n\r\n* Removed AgeGroupFilter in favor of supporting GetPatientAgeGroup and fixed docstrings\r\n\r\n* Added SampleData compat and dependency\r\n\r\n* Renamed files and fixed docs\r\n\r\n* Fixed documentation and fixed methods for calculating age\r\n\r\n* Added helper function to determine year\r\n\r\n* Started adding first batch of tests\r\n\r\n* Added helpers file\r\n\r\n* Removed entry for SampleHealthData until merge of package occurs\r\n\r\n* Converted this function to internal helper function\r\n\r\n* Added new tests and dependencies\r\n\r\n* Added tests for GetPatientGender, GetPatientAgeGroup, GetPatientRace, and GetDatabasePersonIDs\r\n\r\n* Added ignore for various Julia artifacts\r\n\r\n* Initial drafting of full tutorial\r\n\r\n* Finished initial beginner tutorial\r\n\r\n* Updated README with badges and documentation link\r\n\r\n* Modified footer\r\n\r\n* Updated landing page\r\n\r\n* Reordered pages on sidebar\r\n\r\n* Added todo action to automatically create todos\r\n\r\n* Added todos for issues in getters\r\n\r\n* Removed dependency on HealthSampleData and compat entries\r\n\r\n* Added todosfor multiple tests that need to be created\r\n\r\n* Uncommented test sets for running and added todo for Generators\r\n\r\n* Created test for GetPatientVisits()\r\n\r\n* Created Test for ExecuteAudit()\r\n\r\n* Created test for GetMostRecentVisit\r\n\r\n* updated tests\r\n\r\n* started creating test for GetVisitCondition\r\n\r\n* Changed GetVisitCondition Test\r\n\r\n* created test for VisitFilterPersonIDs\r\n\r\n* Added test for filters.jl\r\n\r\n* Finished tests for filters\r\n\r\n* Added a test step for code coverage\r\n\r\n* Removed VSCode configurations\r\n\r\n* Bumped compat entry for HealthSampleData\r\n\r\n* Removed todos and fixed GenderFilterPersonIDs test\r\n\r\n* Removed unnecessary comments\r\n\r\n* For allowing HealthSampleData to always download sample data\r\n\r\n* Test with adding latest codecoverage version\r\n\r\n* Added code coverage badge icon\r\n\r\nCo-authored-by: TheCedarPrince <jacobszelko@gmail.com>\r\nCo-authored-by: Chinta <vchinta6@icl.gtri.org>\r\n\r\n* Simplify Age Calculations (#27)\r\n\r\n* Added SQL generation for filter statements\r\n\r\n* Removed option for internal DB calculation\r\n\r\n* Fixed GetPatientAgeGroup and added GetDatabaseYearRange and updated docstrings\r\n\r\n* Updated test suite\r\n\r\n* Removed old tests for GetPatientAgeGroup\r\n\r\n* Updated tests for helper functions\r\n\r\n* Added Additional Test Coverage for Getters and Helpers (#28)\r\n\r\n* Updated docstrings for SQL rendering\r\n\r\n* Updated docstrings, formatting, and enforced String returns for SQL dispatches\r\n\r\n* Updated test explanation\r\n\r\n* Added test suite for GetMostRecentConditions and formatted\r\n\r\n* Fix to Docs Deployment (#29)\r\n\r\n* Testing fix for docs deployment\r\n\r\n* Expected the OMOPCDMCohortCreator package to be available\r\n\r\n* Added push preview information and the edit link\r\n\r\n* Fixed deprecation warning\r\n\r\n* Final layout fixes to collapselevel\r\n\r\n* Final fix\r\n\r\n* Update to Beginner Tutorial and Minor Refactor of Tutorials Layout (#30)\r\n\r\n* Configured nesting of tutorial\r\n\r\n* Updated landing page description\r\n\r\n* Broke up tutorial pages\r\n\r\n* Added revamped beginner tutorial\r\n\r\n* Overhaul of Docs (#31)\r\n\r\n* Moved beginner tutorial\r\n\r\n* Added tutorial for R usage\r\n\r\n* Updated index of tutorials\r\n\r\n* Fixed up tutorials index\r\n\r\n* Renamed R tutorial\r\n\r\n* Clarified links for tutorials\r\n\r\n* Julia on the brain\r\n\r\n* Added contributing guide\r\n\r\n* Added contributing guide\r\n\r\n* Updated API exports\r\n\r\n* Revamped overview of package\r\n\r\n* Added the most necessary of all things: emojis :sparkles:\r\n\r\n* Fixed up emojis\r\n\r\n* Fixed up API table of contents\r\n\r\n* Fixed emojis\r\n\r\n* Updated main features of package\r\n\r\n* Removed emoji\r\n\r\n* Updated and fixed Citation file (#32)\r\n\r\n* Tagged new release\r\n\r\n* Revamped README details about package\r\n\r\n* Added docstring to ExecuteAudit\r\n\r\nCo-authored-by: VarshC <49307186+VarshC@users.noreply.github.com>\r\nCo-authored-by: Chinta <vchinta6@icl.gtri.org>\r\n\r\n* Moved paper document to its own branch while in progress\r\n\r\n* Quickfix to R tutorial on strep_patients\r\n\r\n* Expanded CI to test on windows, OSX, and 1.6\r\n\r\n* Attempt at making CI process more reasonable\r\n\r\n* Removed paper directory again\r\n\r\n* Bumped for minor patch release\r\n\r\nCo-authored-by: VarshC <49307186+VarshC@users.noreply.github.com>\r\nCo-authored-by: Chinta <vchinta6@icl.gtri.org>\r\n\r\n* Added function to get place of service information (#39)\r\n\r\nAdded GetVisitPlaceOfService getter\r\n\r\n* Added GetVisitConcept getter function (#41)\r\n\r\n* issue #44 add GetVisitDate (#45)\r\n\r\n* added a function GetVisitDate and its tests. Also fixed test for GetVisitConcept\r\n\r\n* Removed SQLite dep\r\n\r\n* Added and updated docstrings\r\n\r\n---------\r\n\r\nCo-authored-by: Varshini Chinta <vchinta6@icl.gtri.org>\r\nCo-authored-by: TheCedarPrince <jacobszelko@gmail.com>\r\n\r\n* Adding the column name (#43)\r\n\r\n* Tag Release of v0.2.1 (#37)\r\n\r\n* Removed type signatures + fixed docstrings; lowercased table names and columns in prep for OMOPCDM\r\n\r\n* Added TODO's for what tests to write\r\n\r\n* Removed type signatures and added TODO for futures\r\n\r\n* Removed type signatures\r\n\r\n* Removed type signatures\r\n\r\n* Raised proposal to CDM maintainers and am awaiting feedback before moving forward on this\r\n\r\n* Removed type signatures and fixed bug with GetPatientVisits to correctly return patient visits\r\n\r\n* Changed docstring in StateFilterPersonIDs and enforced uppercasing for state abbreviations; added exports\r\n\r\n* Added and updated CHANGELOG\r\n\r\n* Bumped project version numbers for new release\r\n\r\n* Removed as it was an early testing prototype file\r\n\r\n* Began revising tutorial documentation\r\n\r\n* Removed Manifest file for package\r\n\r\n* Added Dates and TimeZones deps for managing age groups\r\n\r\n* Disallowed some exports and created new function for generating defaults\r\n\r\n* Added new deps Dates and TimeZones for time management\r\n\r\n* Began refactoring of GetPatientAgeGroup\r\n\r\n* Refactored GetPatientAgeGroup to correctly get age group of patients\r\n\r\n* Removed AgeGroupFilter in favor of supporting GetPatientAgeGroup and fixed docstrings\r\n\r\n* Added SampleData compat and dependency\r\n\r\n* Renamed files and fixed docs\r\n\r\n* Fixed documentation and fixed methods for calculating age\r\n\r\n* Added helper function to determine year\r\n\r\n* Started adding first batch of tests\r\n\r\n* Added helpers file\r\n\r\n* Removed entry for SampleHealthData until merge of package occurs\r\n\r\n* Converted this function to internal helper function\r\n\r\n* Added new tests and dependencies\r\n\r\n* Added tests for GetPatientGender, GetPatientAgeGroup, GetPatientRace, and GetDatabasePersonIDs\r\n\r\n* Added ignore for various Julia artifacts\r\n\r\n* Initial drafting of full tutorial\r\n\r\n* Finished initial beginner tutorial\r\n\r\n* Updated README with badges and documentation link\r\n\r\n* Modified footer\r\n\r\n* Updated landing page\r\n\r\n* Reordered pages on sidebar\r\n\r\n* Updated changelog for new release\r\n\r\n* Beginning draft of submission\r\n\r\n* Creating header affiliations\r\n\r\n* Autogenerated or compiled files\r\n\r\n* Ruby routine for generating header.tex\r\n\r\n* Removed Memoization dependency for user flexibility\r\n\r\n* Added dispatches to render SQL; found bug in GetPatientAgeGroup\r\n\r\n* Added get function for ethnicity\r\n\r\n* Cherry picking some files to resolve conflicts\r\n\r\n* Initial Tests for Getters, Filters, and Executors (#24)\r\n\r\n* Version 0.1.0 Release (#4)\r\n\r\n* Removed type signatures + fixed docstrings; lowercased table names and columns in prep for OMOPCDM\r\n\r\n* Added TODO's for what tests to write\r\n\r\n* Removed type signatures and added TODO for futures\r\n\r\n* Removed type signatures\r\n\r\n* Removed type signatures\r\n\r\n* Raised proposal to CDM maintainers and am awaiting feedback before moving forward on this\r\n\r\n* Removed type signatures and fixed bug with GetPatientVisits to correctly return patient visits\r\n\r\n* Changed docstring in StateFilterPersonIDs and enforced uppercasing for state abbreviations; added exports\r\n\r\n* Added and updated CHANGELOG\r\n\r\n* Bumped project version numbers for new release\r\n\r\n* Removed as it was an early testing prototype file\r\n\r\n* Began revising tutorial documentation\r\n\r\n* Removed Manifest file for package\r\n\r\n* Added Dates and TimeZones deps for managing age groups\r\n\r\n* Disallowed some exports and created new function for generating defaults\r\n\r\n* Added new deps Dates and TimeZones for time management\r\n\r\n* Began refactoring of GetPatientAgeGroup\r\n\r\n* Refactored GetPatientAgeGroup to correctly get age group of patients\r\n\r\n* Removed AgeGroupFilter in favor of supporting GetPatientAgeGroup and fixed docstrings\r\n\r\n* Added SampleData compat and dependency\r\n\r\n* Renamed files and fixed docs\r\n\r\n* Fixed documentation and fixed methods for calculating age\r\n\r\n* Added helper function to determine year\r\n\r\n* Started adding first batch of tests\r\n\r\n* Added helpers file\r\n\r\n* Removed entry for SampleHealthData until merge of package occurs\r\n\r\n* Converted this function to internal helper function\r\n\r\n* Added new tests and dependencies\r\n\r\n* Added tests for GetPatientGender, GetPatientAgeGroup, GetPatientRace, and GetDatabasePersonIDs\r\n\r\n* Added ignore for various Julia artifacts\r\n\r\n* Initial drafting of full tutorial\r\n\r\n* Finished initial beginner tutorial\r\n\r\n* Updated README with badges and documentation link\r\n\r\n* Modified footer\r\n\r\n* Updated landing page\r\n\r\n* Reordered pages on sidebar\r\n\r\n* Added todo action to automatically create todos\r\n\r\n* Added todos for issues in getters\r\n\r\n* Removed dependency on HealthSampleData and compat entries\r\n\r\n* Added todosfor multiple tests that need to be created\r\n\r\n* Uncommented test sets for running and added todo for Generators\r\n\r\n* Created test for GetPatientVisits()\r\n\r\n* Created Test for ExecuteAudit()\r\n\r\n* Created test for GetMostRecentVisit\r\n\r\n* updated tests\r\n\r\n* started creating test for GetVisitCondition\r\n\r\n* Changed GetVisitCondition Test\r\n\r\n* created test for VisitFilterPersonIDs\r\n\r\n* Added test for filters.jl\r\n\r\n* Finished tests for filters\r\n\r\n* Added a test step for code coverage\r\n\r\n* Removed VSCode configurations\r\n\r\n* Bumped compat entry for HealthSampleData\r\n\r\n* Removed todos and fixed GenderFilterPersonIDs test\r\n\r\n* Removed unnecessary comments\r\n\r\n* For allowing HealthSampleData to always download sample data\r\n\r\n* Test with adding latest codecoverage version\r\n\r\n* Added code coverage badge icon\r\n\r\nCo-authored-by: TheCedarPrince <jacobszelko@gmail.com>\r\nCo-authored-by: Chinta <vchinta6@icl.gtri.org>\r\n\r\n* Simplify Age Calculations (#27)\r\n\r\n* Added SQL generation for filter statements\r\n\r\n* Removed option for internal DB calculation\r\n\r\n* Fixed GetPatientAgeGroup and added GetDatabaseYearRange and updated docstrings\r\n\r\n* Updated test suite\r\n\r\n* Removed old tests for GetPatientAgeGroup\r\n\r\n* Updated tests for helper functions\r\n\r\n* Added Additional Test Coverage for Getters and Helpers (#28)\r\n\r\n* Updated docstrings for SQL rendering\r\n\r\n* Updated docstrings, formatting, and enforced String returns for SQL dispatches\r\n\r\n* Updated test explanation\r\n\r\n* Added test suite for GetMostRecentConditions and formatted\r\n\r\n* Fix to Docs Deployment (#29)\r\n\r\n* Testing fix for docs deployment\r\n\r\n* Expected the OMOPCDMCohortCreator package to be available\r\n\r\n* Added push preview information and the edit link\r\n\r\n* Fixed deprecation warning\r\n\r\n* Final layout fixes to collapselevel\r\n\r\n* Final fix\r\n\r\n* Update to Beginner Tutorial and Minor Refactor of Tutorials Layout (#30)\r\n\r\n* Configured nesting of tutorial\r\n\r\n* Updated landing page description\r\n\r\n* Broke up tutorial pages\r\n\r\n* Added revamped beginner tutorial\r\n\r\n* Overhaul of Docs (#31)\r\n\r\n* Moved beginner tutorial\r\n\r\n* Added tutorial for R usage\r\n\r\n* Updated index of tutorials\r\n\r\n* Fixed up tutorials index\r\n\r\n* Renamed R tutorial\r\n\r\n* Clarified links for tutorials\r\n\r\n* Julia on the brain\r\n\r\n* Added contributing guide\r\n\r\n* Added contributing guide\r\n\r\n* Updated API exports\r\n\r\n* Revamped overview of package\r\n\r\n* Added the most necessary of all things: emojis :sparkles:\r\n\r\n* Fixed up emojis\r\n\r\n* Fixed up API table of contents\r\n\r\n* Fixed emojis\r\n\r\n* Updated main features of package\r\n\r\n* Removed emoji\r\n\r\n* Updated and fixed Citation file (#32)\r\n\r\n* Expanded CI to test on Windows & OSX and Julia Versions 1, Nightly, and LTS (#35)\r\n\r\n* Tag New Release v2.0.0 (#33)\r\n\r\n* Removed type signatures + fixed docstrings; lowercased table names and columns in prep for OMOPCDM\r\n\r\n* Added TODO's for what tests to write\r\n\r\n* Removed type signatures and added TODO for futures\r\n\r\n* Removed type signatures\r\n\r\n* Removed type signatures\r\n\r\n* Raised proposal to CDM maintainers and am awaiting feedback before moving forward on this\r\n\r\n* Removed type signatures and fixed bug with GetPatientVisits to correctly return patient visits\r\n\r\n* Changed docstring in StateFilterPersonIDs and enforced uppercasing for state abbreviations; added exports\r\n\r\n* Added and updated CHANGELOG\r\n\r\n* Bumped project version numbers for new release\r\n\r\n* Removed as it was an early testing prototype file\r\n\r\n* Began revising tutorial documentation\r\n\r\n* Removed Manifest file for package\r\n\r\n* Added Dates and TimeZones deps for managing age groups\r\n\r\n* Disallowed some exports and created new function for generating defaults\r\n\r\n* Added new deps Dates and TimeZones for time management\r\n\r\n* Began refactoring of GetPatientAgeGroup\r\n\r\n* Refactored GetPatientAgeGroup to correctly get age group of patients\r\n\r\n* Removed AgeGroupFilter in favor of supporting GetPatientAgeGroup and fixed docstrings\r\n\r\n* Added SampleData compat and dependency\r\n\r\n* Renamed files and fixed docs\r\n\r\n* Fixed documentation and fixed methods for calculating age\r\n\r\n* Added helper function to determine year\r\n\r\n* Started adding first batch of tests\r\n\r\n* Added helpers file\r\n\r\n* Removed entry for SampleHealthData until merge of package occurs\r\n\r\n* Converted this function to internal helper function\r\n\r\n* Added new tests and dependencies\r\n\r\n* Added tests for GetPatientGender, GetPatientAgeGroup, GetPatientRace, and GetDatabasePersonIDs\r\n\r\n* Added ignore for various Julia artifacts\r\n\r\n* Initial drafting of full tutorial\r\n\r\n* Finished initial beginner tutorial\r\n\r\n* Updated README with badges and documentation link\r\n\r\n* Modified footer\r\n\r\n* Updated landing page\r\n\r\n* Reordered pages on sidebar\r\n\r\n* Updated changelog for new release\r\n\r\n* Beginning draft of submission\r\n\r\n* Creating header affiliations\r\n\r\n* Autogenerated or compiled files\r\n\r\n* Ruby routine for generating header.tex\r\n\r\n* Removed Memoization dependency for user flexibility\r\n\r\n* Added dispatches to render SQL; found bug in GetPatientAgeGroup\r\n\r\n* Added get function for ethnicity\r\n\r\n* Cherry picking some files to resolve conflicts\r\n\r\n* Initial Tests for Getters, Filters, and Executors (#24)\r\n\r\n* Version 0.1.0 Release (#4)\r\n\r\n* Removed type signatures + fixed docstrings; lowercased table names and columns in prep for OMOPCDM\r\n\r\n* Added TODO's for what tests to write\r\n\r\n* Removed type signatures and added TODO for futures\r\n\r\n* Removed type signatures\r\n\r\n* Removed type signatures\r\n\r\n* Raised proposal to CDM maintainers and am awaiting feedback before moving forward on this\r\n\r\n* Removed type signatures and fixed bug with GetPatientVisits to correctly return patient visits\r\n\r\n* Changed docstring in StateFilterPersonIDs and enforced uppercasing for state abbreviations; added exports\r\n\r\n* Added and updated CHANGELOG\r\n\r\n* Bumped project version numbers for new release\r\n\r\n* Removed as it was an early testing prototype file\r\n\r\n* Began revising tutorial documentation\r\n\r\n* Removed Manifest file for package\r\n\r\n* Added Dates and TimeZones deps for managing age groups\r\n\r\n* Disallowed some exports and created new function for generating defaults\r\n\r\n* Added new deps Dates and TimeZones for time management\r\n\r\n* Began refactoring of GetPatientAgeGroup\r\n\r\n* Refactored GetPatientAgeGroup to correctly get age group of patients\r\n\r\n* Removed AgeGroupFilter in favor of supporting GetPatientAgeGroup and fixed docstrings\r\n\r\n* Added SampleData compat and dependency\r\n\r\n* Renamed files and fixed docs\r\n\r\n* Fixed documentation and fixed methods for calculating age\r\n\r\n* Added helper function to determine year\r\n\r\n* Started adding first batch of tests\r\n\r\n* Added helpers file\r\n\r\n* Removed entry for SampleHealthData until merge of package occurs\r\n\r\n* Converted this function to internal helper function\r\n\r\n* Added new tests and dependencies\r\n\r\n* Added tests for GetPatientGender, GetPatientAgeGroup, GetPatientRace, and GetDatabasePersonIDs\r\n\r\n* Added ignore for various Julia artifacts\r\n\r\n* Initial drafting of full tutorial\r\n\r\n* Finished initial beginner tutorial\r\n\r\n* Updated README with badges and documentation link\r\n\r\n* Modified footer\r\n\r\n* Updated landing page\r\n\r\n* Reordered pages on sidebar\r\n\r\n* Added todo action to automatically create todos\r\n\r\n* Added todos for issues in getters\r\n\r\n* Removed dependency on HealthSampleData and compat entries\r\n\r\n* Added todosfor multiple tests that need to be created\r\n\r\n* Uncommented test sets for running and added todo for Generators\r\n\r\n* Created test for GetPatientVisits()\r\n\r\n* Created Test for ExecuteAudit()\r\n\r\n* Created test for GetMostRecentVisit\r\n\r\n* updated tests\r\n\r\n* started creating test for GetVisitCondition\r\n\r\n* Changed GetVisitCondition Test\r\n\r\n* created test for VisitFilterPersonIDs\r\n\r\n* Added test for filters.jl\r\n\r\n* Finished tests for filters\r\n\r\n* Added a test step for code coverage\r\n\r\n* Removed VSCode configurations\r\n\r\n* Bumped compat entry for HealthSampleData\r\n\r\n* Removed todos and fixed GenderFilterPersonIDs test\r\n\r\n* Removed unnecessary comments\r\n\r\n* For allowing HealthSampleData to always download sample data\r\n\r\n* Test with adding latest codecoverage version\r\n\r\n* Added code coverage badge icon\r\n\r\nCo-authored-by: TheCedarPrince <jacobszelko@gmail.com>\r\nCo-authored-by: Chinta <vchinta6@icl.gtri.org>\r\n\r\n* Simplify Age Calculations (#27)\r\n\r\n* Added SQL generation for filter statements\r\n\r\n* Removed option for internal DB calculation\r\n\r\n* Fixed GetPatientAgeGroup and added GetDatabaseYearRange and updated docstrings\r\n\r\n* Updated test suite\r\n\r\n* Removed old tests for GetPatientAgeGroup\r\n\r\n* Updated tests for helper functions\r\n\r\n* Added Additional Test Coverage for Getters and Helpers (#28)\r\n\r\n* Updated docstrings for SQL rendering\r\n\r\n* Updated docstrings, formatting, and enforced String returns for SQL dispatches\r\n\r\n* Updated test explanation\r\n\r\n* Added test suite for GetMostRecentConditions and formatted\r\n\r\n* Fix to Docs Deployment (#29)\r\n\r\n* Testing fix for docs deployment\r\n\r\n* Expected the OMOPCDMCohortCreator package to be available\r\n\r\n* Added push preview information and the edit link\r\n\r\n* Fixed deprecation warning\r\n\r\n* Final layout fixes to collapselevel\r\n\r\n* Final fix\r\n\r\n* Update to Beginner Tutorial and Minor Refactor of Tutorials Layout (#30)\r\n\r\n* Configured nesting of tutorial\r\n\r\n* Updated landing page description\r\n\r\n* Broke up tutorial pages\r\n\r\n* Added revamped beginner tutorial\r\n\r\n* Overhaul of Docs (#31)\r\n\r\n* Moved beginner tutorial\r\n\r\n* Added tutorial for R usage\r\n\r\n* Updated index of tutorials\r\n\r\n* Fixed up tutorials index\r\n\r\n* Renamed R tutorial\r\n\r\n* Clarified links for tutorials\r\n\r\n* Julia on the brain\r\n\r\n* Added contributing guide\r\n\r\n* Added contributing guide\r\n\r\n* Updated API exports\r\n\r\n* Revamped overview of package\r\n\r\n* Added the most necessary of all things: emojis :sparkles:\r\n\r\n* Fixed up emojis\r\n\r\n* Fixed up API table of contents\r\n\r\n* Fixed emojis\r\n\r\n* Updated main features of package\r\n\r\n* Removed emoji\r\n\r\n* Updated and fixed Citation file (#32)\r\n\r\n* Tagged new release\r\n\r\n* Revamped README details about package\r\n\r\n* Added docstring to ExecuteAudit\r\n\r\nCo-authored-by: VarshC <49307186+VarshC@users.noreply.github.com>\r\nCo-authored-by: Chinta <vchinta6@icl.gtri.org>\r\n\r\n* Moved paper document to its own branch while in progress\r\n\r\n* Quickfix to R tutorial on strep_patients\r\n\r\n* Expanded CI to test on windows, OSX, and 1.6\r\n\r\n* Attempt at making CI process more reasonable\r\n\r\n* Removed paper directory again\r\n\r\n* Bumped for minor patch release\r\n\r\nCo-authored-by: VarshC <49307186+VarshC@users.noreply.github.com>\r\nCo-authored-by: Chinta <vchinta6@icl.gtri.org>\r\n\r\nCo-authored-by: VarshC <49307186+VarshC@users.noreply.github.com>\r\nCo-authored-by: Chinta <vchinta6@icl.gtri.org>\r\n\r\n* Adding the column name\r\n\r\n---------\r\n\r\nCo-authored-by: Jacob S. Zelko <jacobszelko@gmail.com>\r\nCo-authored-by: VarshC <49307186+VarshC@users.noreply.github.com>\r\nCo-authored-by: Chinta <vchinta6@icl.gtri.org>\r\n\r\n* Bumped compat and release version\r\n\r\n* Updated CHANGELOG for new release\r\n\r\n* Bumped release version\r\n\r\n* Added GetVisitProcedure associated with someones visit (#59)\r\n\r\n* Tag Release of v0.2.2 (#46)\r\n\r\n* Removed type signatures + fixed docstrings; lowercased table names and columns in prep for OMOPCDM\r\n\r\n* Added TODO's for what tests to write\r\n\r\n* Removed type signatures and added TODO for futures\r\n\r\n* Removed type signatures\r\n\r\n* Removed type signatures\r\n\r\n* Raised proposal to CDM maintainers and am awaiting feedback before moving forward on this\r\n\r\n* Removed type signatures and fixed bug with GetPatientVisits to correctly return patient visits\r\n\r\n* Changed docstring in StateFilterPersonIDs and enforced uppercasing for state abbreviations; added exports\r\n\r\n* Added and updated CHANGELOG\r\n\r\n* Bumped project version numbers for new release\r\n\r\n* Removed as it was an early testing prototype file\r\n\r\n* Began revising tutorial documentation\r\n\r\n* Removed Manifest file for package\r\n\r\n* Added Dates and TimeZones deps for managing age groups\r\n\r\n* Disallowed some exports and created new function for generating defaults\r\n\r\n* Added new deps Dates and TimeZones for time management\r\n\r\n* Began refactoring of GetPatientAgeGroup\r\n\r\n* Refactored GetPatientAgeGroup to correctly get age group of patients\r\n\r\n* Removed AgeGroupFilter in favor of supporting GetPatientAgeGroup and fixed docstrings\r\n\r\n* Added SampleData compat and dependency\r\n\r\n* Renamed files and fixed docs\r\n\r\n* Fixed documentation and fixed methods for calculating age\r\n\r\n* Added helper function to determine year\r\n\r\n* Started adding first batch of tests\r\n\r\n* Added helpers file\r\n\r\n* Removed entry for SampleHealthData until merge of package occurs\r\n\r\n* Converted this function to internal helper function\r\n\r\n* Added new tests and dependencies\r\n\r\n* Added tests for GetPatientGender, GetPatientAgeGroup, GetPatientRace, and GetDatabasePersonIDs\r\n\r\n* Added ignore for various Julia artifacts\r\n\r\n* Initial drafting of full tutorial\r\n\r\n* Finished initial beginner tutorial\r\n\r\n* Updated README with badges and documentation link\r\n\r\n* Modified footer\r\n\r\n* Updated landing page\r\n\r\n* Reordered pages on sidebar\r\n\r\n* Updated changelog for new release\r\n\r\n* Beginning draft of submission\r\n\r\n* Creating header affiliations\r\n\r\n* Autogenerated or compiled files\r\n\r\n* Ruby routine for generating header.tex\r\n\r\n* Removed Memoization dependency for user flexibility\r\n\r\n* Added dispatches to render SQL; found bug in GetPatientAgeGroup\r\n\r\n* Added get function for ethnicity\r\n\r\n* Cherry picking some files to resolve conflicts\r\n\r\n* Initial Tests for Getters, Filters, and Executors (#24)\r\n\r\n* Version 0.1.0 Release (#4)\r\n\r\n* Removed type signatures + fixed docstrings; lowercased table names and columns in prep for OMOPCDM\r\n\r\n* Added TODO's for what tests to write\r\n\r\n* Removed type signatures and added TODO for futures\r\n\r\n* Removed type signatures\r\n\r\n* Removed type signatures\r\n\r\n* Raised proposal to CDM maintainers and am awaiting feedback before moving forward on this\r\n\r\n* Removed type signatures and fixed bug with GetPatientVisits to correctly return patient visits\r\n\r\n* Changed docstring in StateFilterPersonIDs and enforced uppercasing for state abbreviations; added exports\r\n\r\n* Added and updated CHANGELOG\r\n\r\n* Bumped project version numbers for new release\r\n\r\n* Removed as it was an early testing prototype file\r\n\r\n* Began revising tutorial documentation\r\n\r\n* Removed Manifest file for package\r\n\r\n* Added Dates and TimeZones deps for managing age groups\r\n\r\n* Disallowed some exports and created new function for generating defaults\r\n\r\n* Added new deps Dates and TimeZones for time management\r\n\r\n* Began refactoring of GetPatientAgeGroup\r\n\r\n* Refactored GetPatientAgeGroup to correctly get age group of patients\r\n\r\n* Removed AgeGroupFilter in favor of supporting GetPatientAgeGroup and fixed docstrings\r\n\r\n* Added SampleData compat and dependency\r\n\r\n* Renamed files and fixed docs\r\n\r\n* Fixed documentation and fixed methods for calculating age\r\n\r\n* Added helper function to determine year\r\n\r\n* Started adding first batch of tests\r\n\r\n* Added helpers file\r\n\r\n* Removed entry for SampleHealthData until merge of package occurs\r\n\r\n* Converted this function to internal helper function\r\n\r\n* Added new tests and dependencies\r\n\r\n* Added tests for GetPatientGender, GetPatientAgeGroup, GetPatientRace, and GetDatabasePersonIDs\r\n\r\n* Added ignore for various Julia artifacts\r\n\r\n* Initial drafting of full tutorial\r\n\r\n* Finished initial beginner tutorial\r\n\r\n* Updated README with badges and documentation link\r\n\r\n* Modified footer\r\n\r\n* Updated landing page\r\n\r\n* Reordered pages on sidebar\r\n\r\n* Added todo action to automatically create todos\r\n\r\n* Added todos for issues in getters\r\n\r\n* Removed dependency on HealthSampleData and compat entries\r\n\r\n* Added todosfor multiple tests that need to be created\r\n\r\n* Uncommented test sets for running and added todo for Generators\r\n\r\n* Created test for GetPatientVisits()\r\n\r\n* Created Test for ExecuteAudit()\r\n\r\n* Created test for GetMostRecentVisit\r\n\r\n* updated tests\r\n\r\n* started creating test for GetVisitCondition\r\n\r\n* Changed GetVisitCondition Test\r\n\r\n* created test for VisitFilterPersonIDs\r\n\r\n* Added test for filters.jl\r\n\r\n* Finished tests for filters\r\n\r\n* Added a test step for code coverage\r\n\r\n* Removed VSCode configurations\r\n\r\n* Bumped compat entry for HealthSampleData\r\n\r\n* Removed todos and fixed GenderFilterPersonIDs test\r\n\r\n* Removed unnecessary comments\r\n\r\n* For allowing HealthSampleData to always download sample data\r\n\r\n* Test with adding latest codecoverage version\r\n\r\n* Added code coverage badge icon\r\n\r\nCo-authored-by: TheCedarPrince <jacobszelko@gmail.com>\r\nCo-authored-by: Chinta <vchinta6@icl.gtri.org>\r\n\r\n* Simplify Age Calculations (#27)\r\n\r\n* Added SQL generation for filter statements\r\n\r\n* Removed option for internal DB calculation\r\n\r\n* Fixed GetPatientAgeGroup and added GetDatabaseYearRange and updated docstrings\r\n\r\n* Updated test suite\r\n\r\n* Removed old tests for GetPatientAgeGroup\r\n\r\n* Updated tests for helper functions\r\n\r\n* Added Additional Test Coverage for Getters and Helpers (#28)\r\n\r\n* Updated docstrings for SQL rendering\r\n\r\n* Updated docstrings, formatting, and enforced String returns for SQL dispatches\r\n\r\n* Updated test explanation\r\n\r\n* Added test suite for GetMostRecentConditions and formatted\r\n\r\n* Fix to Docs Deployment (#29)\r\n\r\n* Testing fix for docs deployment\r\n\r\n* Expected the OMOPCDMCohortCreator package to be available\r\n\r\n* Added push preview information and the edit link\r\n\r\n* Fixed deprecation warning\r\n\r\n* Final layout fixes to collapselevel\r\n\r\n* Final fix\r\n\r\n* Update to Beginner Tutorial and Minor Refactor of Tutorials Layout (#30)\r\n\r\n* Configured nesting of tutorial\r\n\r\n* Updated landing page description\r\n\r\n* Broke up tutorial pages\r\n\r\n* Added revamped beginner tutorial\r\n\r\n* Overhaul of Docs (#31)\r\n\r\n* Moved beginner tutorial\r\n\r\n* Added tutorial for R usage\r\n\r\n* Updated index of tutorials\r\n\r\n* Fixed up tutorials index\r\n\r\n* Renamed R tutorial\r\n\r\n* Clarified links for tutorials\r\n\r\n* Julia on the brain\r\n\r\n* Added contributing guide\r\n\r\n* Added contributing guide\r\n\r\n* Updated API exports\r\n\r\n* Revamped overview of package\r\n\r\n* Added the most necessary of all things: emojis :sparkles:\r\n\r\n* Fixed up emojis\r\n\r\n* Fixed up API table of contents\r\n\r\n* Fixed emojis\r\n\r\n* Updated main features of package\r\n\r\n* Removed emoji\r\n\r\n* Updated and fixed Citation file (#32)\r\n\r\n* Expanded CI to test on Windows & OSX and Julia Versions 1, Nightly, and LTS (#35)\r\n\r\n* Tag New Release v2.0.0 (#33)\r\n\r\n* Removed type signatures + fixed docstrings; lowercased table names and columns in prep for OMOPCDM\r\n\r\n* Added TODO's for what tests to write\r\n\r\n* Removed type signatures and added TODO for futures\r\n\r\n* Removed type signatures\r\n\r\n* Removed type signatures\r\n\r\n* Raised proposal to CDM maintainers and am awaiting feedback before moving forward on this\r\n\r\n* Removed type signatures and fixed bug with GetPatientVisits to correctly return patient visits\r\n\r\n* Changed docstring in StateFilterPersonIDs and enforced uppercasing for state abbreviations; added exports\r\n\r\n* Added and updated CHANGELOG\r\n\r\n* Bumped project version numbers for new release\r\n\r\n* Removed as it was an early testing prototype file\r\n\r\n* Began revising tutorial documentation\r\n\r\n* Removed Manifest file for package\r\n\r\n* Added Dates and TimeZones deps for managing age groups\r\n\r\n* Disallowed some exports and created new function for generating defaults\r\n\r\n* Added new deps Dates and TimeZones for time management\r\n\r\n* Began refactoring of GetPatientAgeGroup\r\n\r\n* Refactored GetPatientAgeGroup to correctly get age group of patients\r\n\r\n* Removed AgeGroupFilter in favor of supporting GetPatientAgeGroup and fixed docstrings\r\n\r\n* Added SampleData compat and dependency\r\n\r\n* Renamed files and fixed docs\r\n\r\n* Fixed documentation and fixed methods for calculating age\r\n\r\n* Added helper function to determine year\r\n\r\n* Started adding first batch of tests\r\n\r\n* Added helpers file\r\n\r\n* Removed entry for SampleHealthData until merge of package occurs\r\n\r\n* Converted this function to internal helper function\r\n\r\n* Added new tests and dependencies\r\n\r\n* Added tests for GetPatientGender, GetPatientAgeGroup, GetPatientRace, and GetDatabasePersonIDs\r\n\r\n* Added ignore for various Julia artifacts\r\n\r\n* Initial drafting of full tutorial\r\n\r\n* Finished initial beginner tutorial\r\n\r\n* Updated README with badges and documentation link\r\n\r\n* Modified footer\r\n\r\n* Updated landing page\r\n\r\n* Reordered pages on sidebar\r\n\r\n* Updated changelog for new release\r\n\r\n* Beginning draft of submission\r\n\r\n* Creating header affiliations\r\n\r\n* Autogenerated or compiled files\r\n\r\n* Ruby routine for generating header.tex\r\n\r\n* Removed Memoization dependency for user flexibility\r\n\r\n* Added dispatches to render SQL; found bug in GetPatientAgeGroup\r\n\r\n* Added get function for ethnicity\r\n\r\n* Cherry picking some files to resolve conflicts\r\n\r\n* Initial Tests for Getters, Filters, and Executors (#24)\r\n\r\n* Version 0.1.0 Release (#4)\r\n\r\n* Removed type signatures + fixed docstrings; lowercased table names and columns in prep for OMOPCDM\r\n\r\n* Added TODO's for what tests to write\r\n\r\n* Removed type signatures and added TODO for futures\r\n\r\n* Removed type signatures\r\n\r\n* Removed type signatures\r\n\r\n* Raised proposal to CDM maintainers and am awaiting feedback before moving forward on this\r\n\r\n* Removed type signatures and fixed bug with GetPatientVisits to correctly return patient visits\r\n\r\n* Changed docstring in StateFilterPersonIDs and enforced uppercasing for state abbreviations; added exports\r\n\r\n* Added and updated CHANGELOG\r\n\r\n* Bumped project version numbers for new release\r\n\r\n* Removed as it was an early testing prototype file\r\n\r\n* Began revising tutorial documentation\r\n\r\n* Removed Manifest file for package\r\n\r\n* Added Dates and TimeZones deps for managing age groups\r\n\r\n* Disallowed some exports and created new function for generating defaults\r\n\r\n* Added new deps Dates and TimeZones for time management\r\n\r\n* Began refactoring of GetPatientAgeGroup\r\n\r\n* Refactored GetPatientAgeGroup to correctly get age group of patients\r\n\r\n* Removed AgeGroupFilter in favor of supporting GetPatientAgeGroup and fixed docstrings\r\n\r\n* Added SampleData compat and dependency\r\n\r\n* Renamed files and fixed docs\r\n\r\n* Fixed documentation and fixed methods for calculating age\r\n\r\n* Added helper function to determine year\r\n\r\n* Started adding first batch of tests\r\n\r\n* Added helpers file\r\n\r\n* Removed entry for SampleHealthData until merge of package occurs\r\n\r\n* Converted this function to internal helper function\r\n\r\n* Added new tests and dependencies\r\n\r\n* Added tests for GetPatientGender, GetPatientAgeGroup, GetPatientRace, and GetDatabasePersonIDs\r\n\r\n* Added ignore for various Julia artifacts\r\n\r\n* Initial drafting of full tutorial\r\n\r\n* Finished initial beginner tutorial\r\n\r\n* Updated README with badges and documentation link\r\n\r\n* Modified footer\r\n\r\n* Updated landing page\r\n\r\n* Reordered pages on sidebar\r\n\r\n* Added todo action to automatically create todos\r\n\r\n* Added todos for issues in getters\r\n\r\n* Removed dependency on HealthSampleData and compat entries\r\n\r\n* Added todosfor multiple tests that need to be created\r\n\r\n* Uncommented test sets for running and added todo for Generators\r\n\r\n* Created test for GetPatientVisits()\r\n\r\n* Created Test for ExecuteAudit()\r\n\r\n* Created test for GetMostRecentVisit\r\n\r\n* updated tests\r\n\r\n* started creating test for GetVisitCondition\r\n\r\n* Changed GetVisitCondition Test\r\n\r\n* created test for VisitFilterPersonIDs\r\n\r\n* Added test for filters.jl\r\n\r\n* Finished tests for filters\r\n\r\n* Added a test step for code coverage\r\n\r\n* Removed VSCode configurations\r\n\r\n* Bumped compat entry for HealthSampleData\r\n\r\n* Removed todos and fixed GenderFilterPersonIDs test\r\n\r\n* Removed unnecessary comments\r\n\r\n* For allowing HealthSampleData to always download sample data\r\n\r\n* Test with adding latest codecoverage version\r\n\r\n* Added code coverage badge icon\r\n\r\nCo-authored-by: TheCedarPrince <jacobszelko@gmail.com>\r\nCo-authored-by: Chinta <vchinta6@icl.gtri.org>\r\n\r\n* Simplify Age Calculations (#27)\r\n\r\n* Added SQL generation for filter statements\r\n\r\n* Removed option for internal DB calculation\r\n\r\n* Fixed GetPatientAgeGroup and added GetDatabaseYearRange and updated docstrings\r\n\r\n* Updated test suite\r\n\r\n* Removed old tests for GetPatientAgeGroup\r\n\r\n* Updated tests for helper functions\r\n\r\n* Added Additional Test Coverage for Getters and Helpers (#28)\r\n\r\n* Updated docstrings for SQL rendering\r\n\r\n* Updated docstrings, formatting, and enforced String returns for SQL dispatches\r\n\r\n* Updated test explanation\r\n\r\n* Added test suite for GetMostRecentConditions and formatted\r\n\r\n* Fix to Docs Deployment (#29)\r\n\r\n* Testing fix for docs deployment\r\n\r\n* Expected the OMOPCDMCohortCreator package to be available\r\n\r\n* Added push preview information and the edit link\r\n\r\n* Fixed deprecation warning\r\n\r\n* Final layout fixes to collapselevel\r\n\r\n* Final fix\r\n\r\n* Update to Beginner Tutorial and Minor Refactor of Tutorials Layout (#30)\r\n\r\n* Configured nesting of tutorial\r\n\r\n* Updated landing page description\r\n\r\n* Broke up tutorial pages\r\n\r\n* Added revamped beginner tutorial\r\n\r\n* Overhaul of Docs (#31)\r\n\r\n* Moved beginner tutorial\r\n\r\n* Added tutorial for R usage\r\n\r\n* Updated index of tutorials\r\n\r\n* Fixed up tutorials index\r\n\r\n* Renamed R tutorial\r\n\r\n* Clarified links for tutorials\r\n\r\n* Julia on the brain\r\n\r\n* Added contributing guide\r\n\r\n* Added contributing guide\r\n\r\n* Updated API exports\r\n\r\n* Revamped overview of package\r\n\r\n* Added the most necessary of all things: emojis :sparkles:\r\n\r\n* Fixed up emojis\r\n\r\n* Fixed up API table of contents\r\n\r\n* Fixed emojis\r\n\r\n* Updated main features of package\r\n\r\n* Removed emoji\r\n\r\n* Updated and fixed Citation file (#32)\r\n\r\n* Tagged new release\r\n\r\n* Revamped README details about package\r\n\r\n* Added docstring to ExecuteAudit\r\n\r\nCo-authored-by: VarshC <49307186+VarshC@users.noreply.github.com>\r\nCo-authored-by: Chinta <vchinta6@icl.gtri.org>\r\n\r\n* Moved paper document to its own branch while in progress\r\n\r\n* Quickfix to R tutorial on strep_patients\r\n\r\n* Expanded CI to test on windows, OSX, and 1.6\r\n\r\n* Attempt at making CI process more reasonable\r\n\r\n* Removed paper directory again\r\n\r\n* Bumped for minor patch release\r\n\r\nCo-authored-by: VarshC <49307186+VarshC@users.noreply.github.com>\r\nCo-authored-by: Chinta <vchinta6@icl.gtri.org>\r\n\r\n* Added function to get place of service information (#39)\r\n\r\nAdded GetVisitPlaceOfService getter\r\n\r\n* Added GetVisitConcept getter function (#41)\r\n\r\n* issue #44 add GetVisitDate (#45)\r\n\r\n* added a function GetVisitDate and its tests. Also fixed test for GetVisitConcept\r\n\r\n* Removed SQLite dep\r\n\r\n* Added and updated docstrings\r\n\r\n---------\r\n\r\nCo-authored-by: Varshini Chinta <vchinta6@icl.gtri.org>\r\nCo-authored-by: TheCedarPrince <jacobszelko@gmail.com>\r\n\r\n* Adding the column name (#43)\r\n\r\n* Tag Release of v0.2.1 (#37)\r\n\r\n* Removed type signatures + fixed docstrings; lowercased table names and columns in prep for OMOPCDM\r\n\r\n* Added TODO's for what tests to write\r\n\r\n* Removed type signatures and added TODO for futures\r\n\r\n* Removed type signatures\r\n\r\n* Removed type signatures\r\n\r\n* Raised proposal to CDM maintainers and am awaiting feedback before moving forward on this\r\n\r\n* Removed type signatures and fixed bug with GetPatientVisits to correctly return patient visits\r\n\r\n* Changed docstring in StateFilterPersonIDs and enforced uppercasing for state abbreviations; added exports\r\n\r\n* Added and updated CHANGELOG\r\n\r\n* Bumped project version numbers for new release\r\n\r\n* Removed as it was an early testing prototype file\r\n\r\n* Began revising tutorial documentation\r\n\r\n* Removed Manifest file for package\r\n\r\n* Added Dates and TimeZones deps for managing age groups\r\n\r\n* Disallowed some exports and created new function for generating defaults\r\n\r\n* Added new deps Dates and TimeZones for time management\r\n\r\n* Began refactoring of GetPatientAgeGroup\r\n\r\n* Refactored GetPatientAgeGroup to correctly get age group of patients\r\n\r\n* Removed AgeGroupFilter in favor of supporting GetPatientAgeGroup and fixed docstrings\r\n\r\n* Added SampleData compat and dependency\r\n\r\n* Renamed files and fixed docs\r\n\r\n* Fixed documentation and fixed methods for calculating age\r\n\r\n* Added helper function to determine year\r\n\r\n* Started adding first batch of tests\r\n\r\n* Added helpers file\r\n\r\n* Removed entry for SampleHealthData until merge of package occurs\r\n\r\n* Converted this function to internal helper function\r\n\r\n* Added new tests and dependencies\r\n\r\n* Added tests for GetPatientGender, GetPatientAgeGroup, GetPatientRace, and GetDatabasePersonIDs\r\n\r\n* Added ignore for various Julia artifacts\r\n\r\n* Initial drafting of full tutorial\r\n\r\n* Finished initial beginner tutorial\r\n\r\n* Updated README with badges and documentation link\r\n\r\n* Modified footer\r\n\r\n* Updated landing page\r\n\r\n* Reordered pages on sidebar\r\n\r\n* Updated changelog for new release\r\n\r\n* Beginning draft of submission\r\n\r\n* Creating header affiliations\r\n\r\n* Autogenerated or compiled files\r\n\r\n* Ruby routine for generating header.tex\r\n\r\n* Removed Memoization dependency for user flexibility\r\n\r\n* Added dispatches to render SQL; found bug in GetPatientAgeGroup\r\n\r\n* Added get function for ethnicity\r\n\r\n* Cherry picking some files to resolve conflicts\r\n\r\n* Initial Tests for Getters, Filters, and Executors (#24)\r\n\r\n* Version 0.1.0 Release (#4)\r\n\r\n* Removed type signatures + fixed docstrings; lowercased table names and columns in prep for OMOPCDM\r\n\r\n* Added TODO's for what tests to write\r\n\r\n* Removed type signatures and added TODO for futures\r\n\r\n* Removed type signatures\r\n\r\n* Removed type signatures\r\n\r\n* Raised proposal to CDM maintainers and am awaiting feedback before moving forward on this\r\n\r\n* Removed type signatures and fixed bug with GetPatientVisits to correctly return patient visits\r\n\r\n* Changed docstring in StateFilterPersonIDs and enforced uppercasing for state abbreviations; added exports\r\n\r\n* Added and updated CHANGELOG\r\n\r\n* Bumped project version numbers for new release\r\n\r\n* Removed as it was an early testing prototype file\r\n\r\n* Began revising tutorial documentation\r\n\r\n* Removed Manifest file for package\r\n\r\n* Added Dates and TimeZones deps for managing age groups\r\n\r\n* Disallowed some exports and created new function for generating defaults\r\n\r\n* Added new deps Dates and TimeZones for time management\r\n\r\n* Began refactoring of GetPatientAgeGroup\r\n\r\n* Refactored GetPatientAgeGroup to correctly get age group of patients\r\n\r\n* Removed AgeGroupFilter in favor of supporting GetPatientAgeGroup and fixed docstrings\r\n\r\n* Added SampleData compat and dependency\r\n\r\n* Renamed files and fixed docs\r\n\r\n* Fixed documentation and fixed methods for calculating age\r\n\r\n* Added helper function to determine year\r\n\r\n* Started adding first batch of tests\r\n\r\n* Added helpers file\r\n\r\n* Removed entry for SampleHealthData until merge of package occurs\r\n\r\n* Converted this function to internal helper function\r\n\r\n* Added new tests and dependencies\r\n\r\n* Added tests for GetPatientGender, GetPatientAgeGroup, GetPatientRace, and GetDatabasePersonIDs\r\n\r\n* Added ignore for various Julia artifacts\r\n\r\n* Initial drafting of full tutorial\r\n\r\n* Finished initial beginner tutorial\r\n\r\n* Updated README with badges and documentation link\r\n\r\n* Modified footer\r\n\r\n* Updated landing page\r\n\r\n* Reordered pages on sidebar\r\n\r\n* Added todo action to automatically create todos\r\n\r\n* Added todos for issues in getters\r\n\r\n* Removed dependency on HealthSampleData and compat entries\r\n\r\n* Added todosfor multiple tests that need to be created\r\n\r\n* Uncommented test sets for running and added todo for Generators\r\n\r\n* Created test for GetPatientVisits()\r\n\r\n* Created Test for ExecuteAudit()\r\n\r\n* Created test for GetMostRecentVisit\r\n\r\n* updated tests\r\n\r\n* started creating test for GetVisitCondition\r\n\r\n* Changed GetVisitCondition Test\r\n\r\n* created test for VisitFilterPersonIDs\r\n\r\n* Added test for filters.jl\r\n\r\n* Finished tests for filters\r\n\r\n* Added a test step for code coverage\r\n\r\n* Removed VSCode configurations\r\n\r\n* Bumped compat entry for HealthSampleData\r\n\r\n* Removed todos and fixed GenderFilterPersonIDs test\r\n\r\n* Removed unnecessary comments\r\n\r\n* For allowing HealthSampleData to always download sample data\r\n\r\n* Test with adding latest codecoverage version\r\n\r\n* Added code coverage badge icon\r\n\r\nCo-authored-by: TheCedarPrince <jacobszelko@gmail.com>\r\nCo-authored-by: Chinta <vchinta6@icl.gtri.org>\r\n\r\n* Simplify Age Calculations (#27)\r\n\r\n* Added SQL generation for filter statements\r\n\r\n* Removed option for internal DB calculation\r\n\r\n* Fixed GetPatientAgeGroup and added GetDatabaseYearRange and updated docstrings\r\n\r\n* Updated test suite\r\n\r\n* Removed old tests for GetPatientAgeGroup\r\n\r\n* Updated tests for helper functions\r\n\r\n* Added Additional Test Coverage for Getters and Helpers (#28)\r\n\r\n* Updated docstrings for SQL rendering\r\n\r\n* Updated docstrings, formatting, and enforced String returns for SQL dispatches\r\n\r\n* Updated test explanation\r\n\r\n* Added test suite for GetMostRecentConditions and formatted\r\n\r\n* Fix to Docs Deployment (#29)\r\n\r\n* Testing fix for docs deployment\r\n\r\n* Expected the OMOPCDMCohortCreator package to be available\r\n\r\n* Added push preview information and the edit link\r\n\r\n* Fixed deprecation warning\r\n\r\n* Final layout fixes to collapselevel\r\n\r\n* Final fix\r\n\r\n* Update to Beginner Tutorial and Minor Refactor of Tutorials Layout (#30)\r\n\r\n* Configured nesting of tutorial\r\n\r\n* Updated landing page description\r\n\r\n* Broke up tutorial pages\r\n\r\n* Added revamped beginner tutorial\r\n\r\n* Overhaul of Docs (#31)\r\n\r\n* Moved beginner tutorial\r\n\r\n* Added tutorial for R usage\r\n\r\n* Updated index of tutorials\r\n\r\n* Fixed up tutorials index\r\n\r\n* Renamed R tutorial\r\n\r\n* Clarified links for tutorials\r\n\r\n* Julia on the brain\r\n\r\n* Added contributing guide\r\n\r\n* Added contributing guide\r\n\r\n* Updated API exports\r\n\r\n* Revamped overview of package\r\n\r\n* Added the most necessary of all things: emojis :sparkles:\r\n\r\n* Fixed up emojis\r\n\r\n* Fixed up API table of contents\r\n\r\n* Fixed emojis\r\n\r\n* Updated main features of package\r\n\r\n* Removed emoji\r\n\r\n* Updated and fixed Citation file (#32)\r\n\r\n* Expanded CI to test on Windows & OSX and Julia Versions 1, Nightly, and LTS (#35)\r\n\r\n* Tag New Release v2.0.0 (#33)\r\n\r\n* Removed type signatures + fixed docstrings; lowercased table names and columns in prep for OMOPCDM\r\n\r\n* Added TODO's for what tests to write\r\n\r\n* Removed type signatures and added TODO for futures\r\n\r\n* Removed type signatures\r\n\r\n* Removed type signatures\r\n\r\n* Raised proposal to CDM maintainers and am awaiting feedback before moving forward on this\r\n\r\n* Removed type signatures and fixed bug with GetPatientVisits to correctly return patient visits\r\n\r\n* Changed docstring in StateFilterPersonIDs and enforced uppercasing for state abbreviations; added exports\r\n\r\n* Added and updated CHANGELOG\r\n\r\n* Bumped project version numbers for new release\r\n\r\n* Removed as it was an early testing prototype file\r\n\r\n* Began revising tutorial documentation\r\n\r\n* Removed Manifest file for package\r\n\r\n* Added Dates and TimeZones deps for managing age groups\r\n\r\n* Disallowed some exports and created new function for generating defaults\r\n\r\n* Added new deps Dates and TimeZones for time management\r\n\r\n* Began refactoring of GetPatientAgeGroup\r\n\r\n* Refactored GetPatientAgeGroup to correctly get age group of patients\r\n\r\n* Removed AgeGroupFilter in favor of supporting GetPatientAgeGroup and fixed docstrings\r\n\r\n* Added SampleData compat and dependency\r\n\r\n* Renamed files and fixed docs\r\n\r\n* Fixed documentation and fixed methods for calculating age\r\n\r\n* Added helper function to determine year\r\n\r\n* Started adding first batch of tests\r\n\r\n* Added helpers file\r\n\r\n* Removed entry for SampleHealthData until merge of package occurs\r\n\r\n* Converted this function to internal helper function\r\n\r\n* Added new tests and dependencies\r\n\r\n* Added tests for GetPatientGender, GetPatientAgeGroup, GetPatientRace, and GetDatabasePersonIDs\r\n\r\n* Added ignore for various Julia artifacts\r\n\r\n* Initial drafting of full tutorial\r\n\r\n* Finished initial beginner tutorial\r\n\r\n* Updated README with badges and documentation link\r\n\r\n* Modified footer\r\n\r\n* Updated landing page\r\n\r\n* Reordered pages on sidebar\r\n\r\n* Updated changelog for new release\r\n\r\n* Beginning draft of submission\r\n\r\n* Creating header affiliations\r\n\r\n* Autogenerated or compiled files\r\n\r\n* Ruby routine for generating header.tex\r\n\r\n* Removed Memoization dependency for user flexibility\r\n\r\n* Added dispatches to render SQL; found bug in GetPatientAgeGroup\r\n\r\n* Added get function for ethnicity\r\n\r\n* Cherry picking some files to resolve conflicts\r\n\r\n* Initial Tests for Getters, Filters, and Executors (#24)\r\n\r\n* Version 0.1.0 Release (#4)\r\n\r\n* Removed type signatures + fixed docstrings; lowercased table names and columns in prep for OMOPCDM\r\n\r\n* Added TODO's for what tests to write\r\n\r\n* Removed type signatures and added TODO for futures\r\n\r\n* Removed type signatures\r\n\r\n* Removed type signatures\r\n\r\n* Raised proposal to CDM maintainers and am awaiting feedback before moving forward on this\r\n\r\n* Removed type signatures and fixed bug with GetPatientVisits to correctly return patient visits\r\n\r\n* Changed docstring in StateFilterPersonIDs and enforced uppercasing for state abbreviations; added exports\r\n\r\n* Added and updated CHANGELOG\r\n\r\n* Bumped project version numbers for new release\r\n\r\n* Removed as it was an early testing prototype file\r\n\r\n* Began revising tutorial documentation\r\n\r\n* Removed Manifest file for package\r\n\r\n* Added Dates and TimeZones deps for managing age groups\r\n\r\n* Disallowed some exports and created new function for generating defaults\r\n\r\n* Added new deps Dates and TimeZones for time management\r\n\r\n* Began refactoring of GetPatientAgeGroup\r\n\r\n* Refactored GetPatientAgeGroup to correctly get age group of patients\r\n\r\n* Removed AgeGroupFilter in favor of supporting GetPatientAgeGroup and fixed docstrings\r\n\r\n* Added SampleData compat and dependency\r\n\r\n* Renamed files and fixed docs\r\n\r\n* Fixed documentation and fixed methods for calculating age\r\n\r\n* Added helper function to determine year\r\n\r\n* Started adding first batch of tests\r\n\r\n* Added helpers file\r\n\r\n* Removed entry for SampleHealthData until merge of package occurs\r\n\r\n* Converted this function to internal helper function\r\n\r\n* Added new tests and dependencies\r\n\r\n* Added tests for GetPatientGender, GetPatientAgeGroup, GetPatientRace, and GetDatabasePersonIDs\r\n\r\n* Added ignore for various Julia artifacts\r\n\r\n* Initial drafting of full tutorial\r\n\r\n* Finished initial beginner tutorial\r\n\r\n* Updated README with badges and documentation link\r\n\r\n* Modified footer\r\n\r\n* Updated landing page\r\n\r\n* Reordered pages on sidebar\r\n\r\n* Added todo action to automatically create todos\r\n\r\n* Added todos for issues in getters\r\n\r\n* Removed dependency on HealthSampleData and compat entries\r\n\r\n* Added todosfor multiple tests that need to be created\r\n\r\n* Uncommented test sets for running and added todo for Generators\r\n\r\n* Created test for GetPatientVisits()\r\n\r\n* Created Test for ExecuteAudit()\r\n\r\n* Created test for GetMostRecentVisit\r\n\r\n* updated tests\r\n\r\n* started creating test for GetVisitCondition\r\n\r\n* Changed GetVisitCondition Test\r\n\r\n* created test for VisitFilterPersonIDs\r\n\r\n* Added test for filters.jl\r\n\r\n* Finished tests for filters\r\n\r\n* Added a test step for code coverage\r\n\r\n* Removed VSCode configurations\r\n\r\n* Bumped compat entry for HealthSampleData\r\n\r\n* Removed todos and fixed GenderFilterPersonIDs test\r\n\r\n* Removed unnecessary comments\r\n\r\n* For allowing HealthSampleData to always download sample data\r\n\r\n* Test with adding latest codecoverage version\r\n\r\n* Added code coverage badge icon\r\n\r\nCo-authored-by: TheCedarPrince <jacobszelko@gmail.com>\r\nCo-authored-by: Chinta <vchinta6@icl.gtri.org>\r\n\r\n* Simplify Age Calculations (#27)\r\n\r\n* Added SQL generation for filter statements\r\n\r\n* Removed option for internal DB calculation\r\n\r\n* Fixed GetPatientAgeGroup and added GetDatabaseYearRange and updated docstrings\r\n\r\n* Updated test suite\r\n\r\n* Removed old tests for GetPatientAgeGroup\r\n\r\n* Updated tests for helper functions\r\n\r\n* Added Additional Test Coverage for Getters and Helpers (#28)\r\n\r\n* Updated docstrings for SQL rendering\r\n\r\n* Updated docstrings, formatting, and enforced String returns for SQL dispatches\r\n\r\n* Updated test explanation\r\n\r\n* Added test suite for GetMostRecentConditions and formatted\r\n\r\n* Fix to Docs Deployment (#29)\r\n\r\n* Testing fix for docs deployment\r\n\r\n* Expected the OMOPCDMCohortCreator package to be available\r\n\r\n* Added push preview information and the edit link\r\n\r\n* Fixed deprecation warning\r\n\r\n* Final layout fixes to collapselevel\r\n\r\n* Final fix\r\n\r\n* Update to Beginner Tutorial and Minor Refactor of Tutorials Layout (#30)\r\n\r\n* Configured nesting of tutorial\r\n\r\n* Updated landing page description\r\n\r\n* Broke up tutorial pages\r\n\r\n* Added revamped beginner tutorial\r\n\r\n* Overhaul of Docs (#31)\r\n\r\n* Moved beginner tutorial\r\n\r\n* Added tutorial for R usage\r\n\r\n* Updated index of tutorials\r\n\r\n* Fixed up tutorials index\r\n\r\n* Renamed R tutorial\r\n\r\n* Clarified links for tutorials\r\n\r\n* Julia on the brain\r\n\r\n* Added contributing guide\r\n\r\n* Added contributing guide\r\n\r\n* Updated API exports\r\n\r\n* Revamped overview of package\r\n\r\n* Added the most necessary of all things: emojis :sparkles:\r\n\r\n* Fixed up emojis\r\n\r\n* Fixed up API table of contents\r\n\r\n* Fixed emojis\r\n\r\n* Updated main features of package\r\n\r\n* Removed emoji\r\n\r\n* Updated and fixed Citation file (#32)\r\n\r\n* Tagged new release\r\n\r\n* Revamped README details about package\r\n\r\n* Added docstring to ExecuteAudit\r\n\r\nCo-authored-by: VarshC <49307186+VarshC@users.noreply.github.com>\r\nCo-authored-by: Chinta <vchinta6@icl.gtri.org>\r\n\r\n* Moved paper document to its own branch while in progress\r\n\r\n* Quickfix to R tutorial on strep_patients\r\n\r\n* Expanded CI to test on windows, OSX, and 1.6\r\n\r\n* Attempt at making CI process more reasonable\r\n\r\n* Removed paper directory again\r\n\r\n* Bumped for minor patch release\r\n\r\nCo-authored-by: VarshC <49307186+VarshC@users.noreply.github.com>\r\nCo-authored-by: Chinta <vchinta6@icl.gtri.org>\r\n\r\nCo-authored-by: VarshC <49307186+VarshC@users.noreply.github.com>\r\nCo-authored-by: Chinta <vchinta6@icl.gtri.org>\r\n\r\n* Adding the column name\r\n\r\n---------\r\n\r\nCo-authored-by: Jacob S. Zelko <jacobszelko@gmail.com>\r\nCo-authored-by: VarshC <49307186+VarshC@users.noreply.github.com>\r\nCo-authored-by: Chinta <vchinta6@icl.gtri.org>\r\n\r\n* Bumped compat and release version\r\n\r\n* Updated CHANGELOG for new release\r\n\r\n* Bumped release version\r\n\r\n---------\r\n\r\nCo-authored-by: VarshC <49307186+VarshC@users.noreply.github.com>\r\nCo-authored-by: Chinta <vchinta6@icl.gtri.org>\r\nCo-authored-by: Farreeda <94711213+Farreeda@users.noreply.github.com>\r\n\r\n* fixing issues (#54)\r\n\r\n* fixing issues\r\n\r\n* removing useless packages\r\n\r\n* change variable name to df\r\n\r\n* Adding documenting comments to explain multiple dispatch\r\n\r\n* docs and tests\r\n\r\nTests need some check for GetAmounts\r\n\r\n* issue #55\r\n\r\n* Re-enabled pull request workflows\r\n\r\n* fixing test errors and tutorial changes\r\n\r\n* increasing code coverage\r\n\r\n* maybe it needs space before @testset\r\n\r\n---------\r\n\r\nCo-authored-by: Farreeda <fareedaabdelazeez@gmail.com>\r\nCo-authored-by: TheCedarPrince <jacobszelko@gmail.com>\r\n\r\n* Tagging for 0.3.0 release\r\n\r\n* added Getter\r\n\r\n* add to api.md\r\n\r\n* added test cases\r\n\r\n* moved to getters\r\n\r\n* reverts\r\n\r\n* test cases updated\r\n\r\n* Adding a few more tests and satisfying CodeCov\r\n\r\n* resolved\r\n\r\n* resolved\r\n\r\n* added some final test cases\r\n\r\n* corrected the test cases\r\n\r\n---------\r\n\r\nCo-authored-by: Jacob S. 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