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Memory usage #9

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talban14 opened this issue Dec 9, 2021 · 1 comment
Open

Memory usage #9

talban14 opened this issue Dec 9, 2021 · 1 comment

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@talban14
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talban14 commented Dec 9, 2021

Hi i'm running the MEDALT package on one of my samples (about 3,000 cells) but was met with this error below after about 8 hours of run time.

slurmstepd: error: Detected 1 oom-kill event(s) in step 802100.batch cgroup. Some of your processes may have been killed by the cgroup out-of-memory handler.

I received this initially on a 750gb node and so i increased to our 3TB node and specified the entire node. Seems that 3TB should be more than enough for a job like this?

best,
Tyler
@yikang613
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Did you fix it? I met the same problem but cant finish it.

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@talban14 @yikang613