From 26686258c5bbd4f3070c067b2a4cf34dc3e407bf Mon Sep 17 00:00:00 2001 From: Kenneth Shang Date: Wed, 30 Oct 2024 09:26:23 +0800 Subject: [PATCH] Update phabox2.py --- src/phabox2/phabox2.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/src/phabox2/phabox2.py b/src/phabox2/phabox2.py index 96196e1..41bb260 100644 --- a/src/phabox2/phabox2.py +++ b/src/phabox2/phabox2.py @@ -364,12 +364,12 @@ def main(): logger.info(f"PhaBOX2 is running with: {inputs.threads} threads!") if inputs.task == "end_to_end": phamer.run(inputs) - phagcn.run(inputs) - cherry.run(inputs) - phatyp.run(inputs) logger.info(f"PhaMer finished! please check the results in {os.path.join(inputs.outpth, 'final_prediction')}") + phagcn.run(inputs) logger.info(f"PhaGCN finished! please check the results in {os.path.join(inputs.outpth, 'final_prediction')}") + cherry.run(inputs) logger.info(f"Cherry finished! please check the results in {os.path.join(inputs.outpth, 'final_prediction')}") + phatyp.run(inputs) logger.info(f"PhaTYP finished! please check the results in {os.path.join(inputs.outpth, 'final_prediction')}") df1 = pd.read_csv(os.path.join(inputs.outpth, 'final_prediction', 'phamer_prediction.tsv'), sep='\t') df2 = pd.read_csv(os.path.join(inputs.outpth, 'final_prediction', 'phagcn_prediction.tsv'), sep='\t')