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[BUG] Could not open file ./configurations/defaults.json. #17

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wlugmayr opened this issue Mar 9, 2023 · 0 comments
Open

[BUG] Could not open file ./configurations/defaults.json. #17

wlugmayr opened this issue Mar 9, 2023 · 0 comments
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@wlugmayr
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wlugmayr commented Mar 9, 2023

Describe the bug

A default run in an empty project directory (not in the TomoBEAR install directory gives the error message above but it continues working

Project JSON file

        "data_path": "/gpfs/cssb/software/tutorials/empiar_data/EMPIAR-10064-CTEM/10064/data/*.mrc",
       "processing_path": ".",

Error message

jobid : 790785

Loading tomobear/0.2.0
Loading requirement: aretomo/1.3.3 gctf/1.18.0 imod/4.11.21 mcr/9.10
motioncor2/1.5.0
INFO: startup...
Warning: Executing startup failed in matlabrc.
This indicates a potentially serious problem in your MATLAB setup, which should be resolved as soon as possible. Error detected was:
MATLAB:fileread:cannotOpenFile
Could not open file ./configurations/defaults.json. No such file or directory.
3dmod -h: Aborted
INFO: PROCESSING STEP 1:MetaData
INFO: PROCESSING STEP 2:CreateStacks
:

@ArtsemiY ArtsemiY added the bug Something isn't working label Mar 10, 2023
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