Reference limits for readish?

[Ge0rges]

Hello,

I'm wondering if there is a practical limit on the reference size readfish can use (assuming I have enough RAM to load the reference into memory).

Specifically, I'm wondering if, for example, I could make my reference all known bacterial sequences (such that my sequencing effort would exclude eukaryotes)?

Thanks!

[github-actions]

We found the following entry in the FAQ which you may find helpful:

• How do I create a readfish python environment?

Feel free to close this issue if you found an answer in the FAQ. Otherwise, please give us a little time to review.

This is an automated reply, generated by FAQtory