automaticBuilding.yml

name: Full build and publish with versioning
on:
  push:
    tags:
      - "v*" # Push events to matching v*, i.e. v1.0, v20.15.10
permissions:
  contents: write
jobs:
  build-windows:
    runs-on: windows-latest

    steps:
      - name: Checkout code
        uses: actions/checkout@v4
        with:
          submodules: recursive
          fetch-depth: 0 # Fetch full history for branches
      
      - name: Checking out the correct branches for submodules
        run: |
          git submodule foreach '
          if [ "$name" = "pythonCode/submodules/MEDimage" ]; then
            git fetch origin && git checkout -B dev_lab origin/dev_lab && git pull origin dev_lab
          elif [ "$name" = "pythonCode/submodules/MEDprofiles" ]; then
            git fetch origin && git checkout -B fusion_MEDomicsLab origin/fusion_MEDomicsLab && git pull origin fusion_MEDomicsLab
          else
            echo "No branch specified for $name"
          fi
          '

      - name: Set up Node.js
        uses: actions/setup-node@v4
        with:
          node-version: 18.13

      - name: Get tag name
        shell: bash
        run: |
          VERSION=${GITHUB_REF/refs\/tags\//} # Remove "refs/tags/" from the beginning of the tag name 
          NEW_VERSION="${VERSION}"
          node -p "let pkg=require('./package.json'); pkg.version='$NEW_VERSION'; require('fs').writeFileSync('package.json', JSON.stringify(pkg, null, 2));"

      - name: Print package.json
        run: Get-Content package.json

      - name: Install dependencies
        run: npm install

      - name: Setup Go
        uses: actions/setup-go@v4
        with:
          go-version: 1.21

      - name: Build go
        run: |
          cd go_server
          go build main.go 
          cd ..

      - name: Prebuild libmongocrypt
        run: bash ./utilScripts/libmongocrypt_prebuild.sh

      - name: Build for Windows
        run: npm run build:win

      - name: Get tag name
        id: get-tag
        shell: bash
        run: |
          VERSION=${GITHUB_REF/refs\/tags\//}
          echo "::set-output name=VERSION::${VERSION#v}"

      - name: Archive Windows
        uses: actions/upload-artifact@v3
        with:
          name: windows-built
          path: ./build/dist/MEDomicsLab-${{ env.VERSION }}-win.exe
        env:
          VERSION: ${{ steps.get-tag.outputs.VERSION }}

  build-linux-ubuntu:
    runs-on: ubuntu-20.04

    steps:
      - name: Checkout code
        uses: actions/checkout@v4
        with:
          submodules: recursive
          fetch-depth: 0 # Fetch full history for branches
      
      - name: Checking out the correct branches for submodules
        run: |
          git submodule foreach '
          if [ "$name" = "pythonCode/submodules/MEDimage" ]; then
            git fetch origin && git checkout -B dev_lab origin/dev_lab && git pull origin dev_lab
          elif [ "$name" = "pythonCode/submodules/MEDprofiles" ]; then
            git fetch origin && git checkout -B fusion_MEDomicsLab origin/fusion_MEDomicsLab && git pull origin fusion_MEDomicsLab
          else
            echo "No branch specified for $name"
          fi
          '

      - name: Set up Node.js
        uses: actions/setup-node@v4
        with:
          node-version: 18.13

      - name: Get tag name
        run: |
          VERSION=${GITHUB_REF/refs\/tags\//}
          NEW_VERSION="${VERSION}"
          node -p "let pkg=require('./package.json'); pkg.version='$NEW_VERSION'; require('fs').writeFileSync('package.json', JSON.stringify(pkg, null, 2));"

      - name: Print package.json
        run: cat package.json

      - name: Install dependencies
        run: npm install

      - name: Setup Go
        uses: actions/setup-go@v4
        with:
          go-version: 1.21

      - name: Build go
        run: |
          cd go_server
          go build main.go 
          cd ..

      - name: Prebuild libmongocrypt
        run: bash ./utilScripts/libmongocrypt_prebuild.sh

      - name: Build for Linux
        run: npm run build:linux

      - name: Get tag name
        id: get-tag
        run: |
          VERSION=${GITHUB_REF/refs\/tags\//}
          echo "::set-output name=VERSION::${VERSION#v}"

      - name: Rename Linux
        run: mv ./build/dist/MEDomicsLab-${{ env.VERSION }}-linux.deb ./build/dist/MEDomicsLab-${{ env.VERSION }}-ubuntu.deb
        env:
          VERSION: ${{ steps.get-tag.outputs.VERSION }}

      - name: Archive Linux
        uses: actions/upload-artifact@v3
        with:
          name: linux-built-ubuntu
          path: ./build/dist/MEDomicsLab-${{ env.VERSION }}-ubuntu.deb
        env:
          VERSION: ${{ steps.get-tag.outputs.VERSION }}

  build-mac:
    runs-on: macos-latest

    steps:
      - name: Checkout code
        uses: actions/checkout@v4
        with:
          submodules: recursive
          fetch-depth: 0 # Fetch full history for branches
      
      - name: Checking out the correct branches for submodules
        run: |
          git submodule foreach '
          if [ "$name" = "pythonCode/submodules/MEDimage" ]; then
            git fetch origin && git checkout -B dev_lab origin/dev_lab && git pull origin dev_lab
          elif [ "$name" = "pythonCode/submodules/MEDprofiles" ]; then
            git fetch origin && git checkout -B fusion_MEDomicsLab origin/fusion_MEDomicsLab && git pull origin fusion_MEDomicsLab
          else
            echo "No branch specified for $name"
          fi
          '
          
      - name: Setup Go
        uses: actions/setup-go@v4
        with:
          go-version: 1.21

      - name: Build go
        run: |
          cd go_server
          go build main.go 
          cd ..

      - name: Set up Node.js
        uses: actions/setup-node@v4
        with:
          node-version: 18.13

      - name: Mac OS X with M1 chip
        run: uname -m

      - name: Install Python 2.7
        uses: actions/setup-python@v2
        with:
          python-version: 3.9
      - name: Bash python 1st try
        run: |
          echo $PATH
          python --version
          which python
      - name: Bash python 2nd try
        run: |
          echo $PATH
          python --version
          which python
        shell: bash {0}
      - name: Bash python 3rd try
        run: |
          echo $PATH
          python --version
          which python
        shell: bash -l {0}

      - name: Check if Python2.7 is installed
        run: |
          if ! which python2.7 > /dev/null; then
            curl -O https://www.python.org/ftp/python/2.7.18/python-2.7.18-macosx10.9.pkg
            sudo installer -pkg python-2.7.18-macosx10.9.pkg -target /
          else
            echo "Python 2.7 is already installed"
          fi

      - name: Install dependencies
        run: npm install

      - uses: actions/checkout@v4

      - name: Cache node modules
        id: cache-npm
        uses: actions/cache@v3
        env:
          cache-name: cache-node-modules
        with:
          # npm cache files are stored in `~/.npm` on Linux/macOS
          path: ~/.npm
          key: ${{ runner.os }}-build-${{ env.cache-name }}-${{ hashFiles('**/package-lock.json') }}
          restore-keys: |
            ${{ runner.os }}-build-${{ env.cache-name }}-
            ${{ runner.os }}-build-
            ${{ runner.os }}-

      - if: ${{ steps.cache-npm.outputs.cache-hit != 'true' }}
        name: List the state of node modules
        continue-on-error: true
        run: npm list

      - name: Install dependencies
        run: npm install

      - name: Prebuild libmongocrypt
        run: bash ./utilScripts/libmongocrypt_prebuild.sh

      - name: Update version
        run: |
          node -p "let pkg=require('./package.json'); pkg.version='${GITHUB_REF/refs\/tags\//}'; require('fs').writeFileSync('package.json', JSON.stringify(pkg, null, 2));"
          echo "Version updated to ${GITHUB_REF/refs\/tags\//}"

      # Before building the app, allocate more memory to the shell
      - name: Allocate more memory
        run: export NODE_OPTIONS=--max-old-space-size=8192

      - name: Build for Mac
        run: npm run build:mac

      - name: Get tag name
        id: get-tag
        run: |
          VERSION=${GITHUB_REF/refs\/tags\//}
          echo "::set-output name=VERSION::${VERSION#v}"

      - name: Archive Mac
        uses: actions/upload-artifact@v3
        with:
          name: mac-built
          path: ./build/dist/MEDomicsLab-${{ env.VERSION }}-mac.pkg
        env:
          VERSION: ${{ steps.get-tag.outputs.VERSION }}

  # Publish to GitHub
  publish:
    needs: [build-windows, build-linux-ubuntu, build-mac]
    runs-on: ubuntu-latest
    steps:
      - name: Checkout code
        uses: actions/checkout@v4

      - name: Download Windows
        uses: actions/download-artifact@v3
        with:
          name: windows-built

      - name: Download Linux Ubuntu
        uses: actions/download-artifact@v3
        with:
          name: linux-built-ubuntu

      - name: Download Mac
        uses: actions/download-artifact@v3
        with:
          name: mac-built

      - name: Install zip
        run: sudo apt-get install zip

      - name: Move files out of pythonEnv - to root
        run: |
          mv ./pythonEnv/requirements.txt ./requirements.txt
          mv ./pythonEnv/requirements_mac.txt ./requirements_mac.txt
          mv ./pythonEnv/conda_env_osx64.yml ./conda_env_osx64.yml
          mv ./pythonEnv/create_conda_env_win.bat ./create_conda_env_win.bat
          mv ./pythonEnv/create_conda_env_linux.sh ./create_conda_env_linux.sh
          mv ./pythonEnv/create_conda_env_mac_yml.sh ./create_conda_env_mac_yml.sh
          mv ./pythonEnv/create_conda_env_mac.sh ./create_conda_env_mac.sh
          ls -R

      - name: zip Windows
        run: zip -r MEDomicsLab-PythonEnv-win.zip ./requirements.txt ./create_conda_env_win.bat

      - name: zip Linux
        run: zip -r MEDomicsLab-PythonEnv-linux.zip ./requirements.txt ./create_conda_env_linux.sh

      - name: zip Mac
        run: zip -r MEDomicsLab-PythonEnv-mac.zip ./create_conda_env_mac.sh ./requirements_mac.txt
      - name: Get tag name
        id: get-tag
        run: |
          VERSION=${GITHUB_REF/refs\/tags\//}
          echo "::set-output name=VERSION::${VERSION#v}"

      - name: Publish to GitHub
        uses: softprops/action-gh-release@v1
        with:
          files: |
            ./MEDomicsLab-${{ env.VERSION }}-win.exe
            ./MEDomicsLab-${{ env.VERSION }}-ubuntu.deb
            ./MEDomicsLab-${{ env.VERSION }}-mac.pkg
          name: MEDomicsLab-${{ env.VERSION }}
          body: |
            MEDomicsLab-${{ env.VERSION }}
            This is a full release of MEDomicsLab. This release includes the MEDomicsLab application and the Python environment.
            Refer to the [Documentation](https://medomics-udes.gitbook.io/medomicslab-docs/)
            ${{ github.ref }}
          draft: true
          prerelease: false
          token: ${{ secrets.GITHUB_TOKEN }}
        env:
          VERSION: ${{ steps.get-tag.outputs.VERSION }}