From 6908fa303d9322217518539fd2f1066f61b88b5a Mon Sep 17 00:00:00 2001 From: Alistair Johnson Date: Fri, 3 Feb 2023 19:33:38 -0500 Subject: [PATCH] remove scripts testing row count for older versions --- mimic-iv-ed/buildmimic/mysql/validate_old.sql | 30 ---------------- .../buildmimic/postgres/validate_old.sql | 34 ------------------- 2 files changed, 64 deletions(-) delete mode 100644 mimic-iv-ed/buildmimic/mysql/validate_old.sql delete mode 100644 mimic-iv-ed/buildmimic/postgres/validate_old.sql diff --git a/mimic-iv-ed/buildmimic/mysql/validate_old.sql b/mimic-iv-ed/buildmimic/mysql/validate_old.sql deleted file mode 100644 index 529df4353..000000000 --- a/mimic-iv-ed/buildmimic/mysql/validate_old.sql +++ /dev/null @@ -1,30 +0,0 @@ --- Validate the MIMIC-IV-ED tables built correctly by checking against known row counts. --- Only For MIMIC-IV-ED v1.0, v2.0 -SELECT - CASE - WHEN exp.row_count = obs.row_count - THEN 'PASSED' - ELSE 'FAILED' - END AS chk - , exp.row_count AS exp - , obs.row_count AS obs - , exp.tbl as table_name -FROM ( - SELECT 'edstays' AS tbl, 447712 AS row_count UNION ALL - SELECT 'diagnosis' AS tbl, 946692 AS row_count UNION ALL - SELECT 'medrecon' AS tbl, 3143791 AS row_count UNION ALL - SELECT 'pyxis' AS tbl, 1670590 AS row_count UNION ALL - SELECT 'triage' AS tbl, 447712 AS row_count UNION ALL - SELECT 'vitalsign' AS tbl, 1646976 AS row_count -) exp -INNER JOIN ( - SELECT 'edstays' AS tbl, COUNT(*) AS row_count FROM edstays UNION ALL - SELECT 'diagnosis' AS tbl, COUNT(*) AS row_count FROM diagnosis UNION ALL - SELECT 'medrecon' AS tbl, COUNT(*) AS row_count FROM medrecon UNION ALL - SELECT 'pyxis' AS tbl, COUNT(*) AS row_count FROM pyxis UNION ALL - SELECT 'triage' AS tbl, COUNT(*) AS row_count FROM triage UNION ALL - SELECT 'vitalsign' AS tbl, COUNT(*) AS row_count FROM vitalsign -) obs - ON exp.tbl = obs.tbl -ORDER BY exp.tbl -; \ No newline at end of file diff --git a/mimic-iv-ed/buildmimic/postgres/validate_old.sql b/mimic-iv-ed/buildmimic/postgres/validate_old.sql deleted file mode 100644 index 2d18151b3..000000000 --- a/mimic-iv-ed/buildmimic/postgres/validate_old.sql +++ /dev/null @@ -1,34 +0,0 @@ --- Validate the MIMIC-IV-ED tables built correctly by checking against known row counts. --- Only For MIMIC-IV-ED v1.0, v2.0 -WITH expected AS -( - SELECT 'edstays' AS tbl, 447712 AS row_count UNION ALL - SELECT 'diagnosis' AS tbl, 946692 AS row_count UNION ALL - SELECT 'medrecon' AS tbl, 3143791 AS row_count UNION ALL - SELECT 'pyxis' AS tbl, 1670590 AS row_count UNION ALL - SELECT 'triage' AS tbl, 447712 AS row_count UNION ALL - SELECT 'vitalsign' AS tbl, 1646976 AS row_count -) -, observed as -( - SELECT 'edstays' AS tbl, COUNT(*) AS row_count FROM mimiciv_ed.edstays UNION ALL - SELECT 'diagnosis' AS tbl, COUNT(*) AS row_count FROM mimiciv_ed.diagnosis UNION ALL - SELECT 'medrecon' AS tbl, COUNT(*) AS row_count FROM mimiciv_ed.medrecon UNION ALL - SELECT 'pyxis' AS tbl, COUNT(*) AS row_count FROM mimiciv_ed.pyxis UNION ALL - SELECT 'triage' AS tbl, COUNT(*) AS row_count FROM mimiciv_ed.triage UNION ALL - SELECT 'vitalsign' AS tbl, COUNT(*) AS row_count FROM mimiciv_ed.vitalsign -) -SELECT - exp.tbl - , exp.row_count AS expected_count - , obs.row_count AS observed_count - , CASE - WHEN exp.row_count = obs.row_count - THEN 'PASSED' - ELSE 'FAILED' - END AS ROW_COUNT_CHECK -FROM expected exp -INNER JOIN observed obs - ON exp.tbl = obs.tbl -ORDER BY exp.tbl -; \ No newline at end of file