integration.yml

name: Integration testing
on:
  workflow_dispatch:
env:
  GCC_V: 12
  INTEL_V: 2021.7
jobs:
  test_modflow:
    name: MODFLOW 6 integration tests
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ ubuntu-22.04, macos-13, macos-14, windows-2019 ]
    defaults:
      run:
        shell: bash -l {0}
    steps:

      - name: Checkout repo
        uses: actions/checkout@v4
        with:
          path: executables

      - name: Checkout modflow6
        uses: actions/checkout@v4
        with:
          repository: MODFLOW-USGS/modflow6
          path: modflow6

      - name: Setup Micromamba
        uses: mamba-org/setup-micromamba@v1
        with:
          environment-file: modflow6/environment.yml
          cache-environment: true
          cache-downloads: true
          init-shell: bash

      - name: Setup ${{ contains(fromJSON('["macos-14"]'), matrix.os) && 'gcc' || 'intel-classic' }} ${{ contains(fromJSON('["macos-14"]'), matrix.os) && env.GCC_V || env.INTEL_V }}
        uses: fortran-lang/setup-fortran@v1
        with:
          compiler: ${{ contains(fromJSON('["macos-14"]'), matrix.os) && 'gcc' || 'intel-classic' }}
          version: ${{ contains(fromJSON('["macos-14"]'), matrix.os) && env.GCC_V || env.INTEL_V }}
      
      - name: Setup Xcode CLT (macOS)
        uses: maxim-lobanov/setup-xcode@v1
        if: runner.os == 'macOS'
        with:
          xcode-version: ${{ contains(fromJSON('["macos-13"]'), matrix.os) && '14.3.1' || 'latest' }}

      - name: Set LDFLAGS (ARM macOS)
        run: |
          ldflags="$LDFLAGS -Wl,-ld_classic"
          echo "LDFLAGS=$ldflags" >> $GITHUB_ENV

      - name: Hide dylibs (ARM macOS)
        if: matrix.os == 'macos-14'
        run: |
          libpath="/opt/homebrew/opt/gcc@${{ env.GCC_V }}/lib/gcc/${{ env.GCC_V }}"
          mv $libpath/libgfortran.5.dylib $libpath/libgfortran.5.dylib.bak 
          mv $libpath/libquadmath.0.dylib $libpath/libquadmath.0.dylib.bak
          mv $libpath/libstdc++.6.dylib $libpath/libstdc++.6.dylib.bak

      # only necessary because we need mf5to6 for mf6 autotests
      - name: Build modflow6
        working-directory: modflow6
        run: |
          setupargs="--prefix=$(pwd) --libdir=bin -Ddebug=false"
          if [[ "${{ matrix.os }}" == "macos-14" ]]; then
            setupargs="$setupargs -Doptimization=1"
          fi
          meson setup builddir $setupargs
          meson install -C builddir
      
      - name: Get OS tag
        id: ostag
        run: |
          ostag=$(python -c "from modflow_devtools.ostags import get_ostag; print(get_ostag())")
          echo "ostag=$ostag" >> $GITHUB_OUTPUT

      - name: Build programs
        uses: nick-fields/retry@v3
        with:
          shell: bash
          timeout_minutes: 40
          command: |
            ostag="${{ steps.ostag.outputs.ostag }}"
            mkdir $ostag
            make-program : --appdir $ostag --zip $ostag.zip --verbose
            make-program mf2005,mflgr,mfnwt,mfusg --appdir $ostag --double --keep --zip $ostag.zip --verbose
            if [[ "${{ matrix.os }}" == "macos-14" ]]; then
              make-program mf6 --appdir $ostag --keep --zip $ostag.zip --verbose --fflags='-O1'
            fi
            make-code-json --appdir $ostag --zip $ostag.zip --verbose

      - name: Move programs
        run: |
          # build programs
          ostag="${{ steps.ostag.outputs.ostag }}"

          # move programs where mf6 autotests expect them
          mkdir modflow6/bin/downloaded
          cp $ostag/* modflow6/bin/downloaded

          # move mf6 binaries to top-level bindir in mf6 repo
          if [[ "$RUNNER_OS" == "Windows" ]]; then
            eext=".exe"
            oext=".dll"
          elif [[ "$RUNNER_OS" == "Linux" ]]; then
            eext=""
            oext=".so"
          else
            eext=""
            oext=".dylib"
          fi
          cp "$ostag/mf6$eext" modflow6/bin
          cp "$ostag/libmf6$oext" modflow6/bin
          cp "$ostag/zbud6$eext" modflow6/bin

          # set execute permissions
          if [[ "$RUNNER_OS" != "Windows" ]]; then
            sudo chmod +x modflow6/bin/*
            sudo chmod +x modflow6/bin/downloaded/*
          fi

      - name: Show programs
        run: |
          ostag="${{ steps.ostag.outputs.ostag }}"
          ls $ostag

      - name: Check linked libs (ARM macOS)
        if: matrix.os == 'macos-14'
        run: |
          ostag="${{ steps.ostag.outputs.ostag }}"
          find $ostag -perm +111 -type f | xargs -I{} sh -c "otool -L {}"
      
      - name: Upload programs
        uses: actions/upload-artifact@v3
        with:
          name: ${{ steps.ostag.outputs.ostag }}
          path: ${{ steps.ostag.outputs.ostag }}.zip

      - name: Upload metadata
        if: runner.os == 'Linux'
        uses: actions/upload-artifact@v3
        with:
          name: ${{ steps.ostag.outputs.ostag }}
          path: |
            ./code.json
            ./code.md

      - name: Update flopy
        working-directory: modflow6/autotest
        run: python update_flopy.py

      - name: Test modflow6
        working-directory: modflow6/autotest
        run: pytest -v -n auto -m "not developmode" --durations 0