From 243ce41f020486a2e390a9f7550412007555b3f8 Mon Sep 17 00:00:00 2001
From: Martin Hunt <martinghunt@users.noreply.github.com>
Date: Wed, 22 May 2024 16:08:59 +0100
Subject: [PATCH] Bug fix custom panels KeyError: ncbi_names_json

---
 src/mykrobe/cmds/amr.py | 1 +
 1 file changed, 1 insertion(+)

diff --git a/src/mykrobe/cmds/amr.py b/src/mykrobe/cmds/amr.py
index 552112e..9172184 100755
--- a/src/mykrobe/cmds/amr.py
+++ b/src/mykrobe/cmds/amr.py
@@ -153,6 +153,7 @@ def ref_data_from_args(args):
             "var_to_res_json": args.custom_variant_to_resistance_json,
             "hierarchy_json": None,
             "lineage_json": args.custom_lineage_json,
+            "ncbi_names_json": None,
             "kmer": args.kmer,
             "version": "custom",
             "species_phylo_group": None,