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Unclear instructions #13

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luhugerth opened this issue Nov 25, 2021 · 1 comment

luhugerth commented Nov 25, 2021

My student is following the instructions as given in the Readme and got stuck on step 5:

$ contigtax search -p 4 53.fa uniref100/diamond.dmnd assembly.tsv.gz
ERROR: This diamond version requires you to supply a taxonmap file with --taxonmap at this stage

I managed to figure out she needed to add --taxonmap uniref100/prot.accession2taxid.gz, but it's probably good to be explicit about this!

The text was updated successfully, but these errors were encountered:

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johnne commented Feb 17, 2022

Hi Luisa! Yes thanks for the tip, will make sure to fix that in the next release!

johnne referenced this issue


          Make error message more clear

914c3fa

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