diff --git a/casanovo/denovo/model_runner.py b/casanovo/denovo/model_runner.py index 72cd78b7..e23a1b42 100644 --- a/casanovo/denovo/model_runner.py +++ b/casanovo/denovo/model_runner.py @@ -20,12 +20,8 @@ from ..denovo.model import Spec2Pep from ..denovo.model import DBSpec2Pep -from pytorch_lightning.profiler import SimpleProfiler, AdvancedProfiler - - logger = logging.getLogger("casanovo") - def predict( peak_path: str, model_filename: str, @@ -393,10 +389,7 @@ def db_search( # Create the Trainer object. abs_experiment_dirpath = "/net/noble/vol2/home/vananth3/2023_vananth_denovo-dbsearch/results/2023-08-21_speedup" - profiler = AdvancedProfiler( - dirpath=abs_experiment_dirpath, - filename="placeholder", - ) + trainer = pl.Trainer( accelerator="auto", auto_select_gpus=True, @@ -404,8 +397,7 @@ def db_search( logger=config["logger"], max_epochs=config["max_epochs"], num_sanity_val_steps=config["num_sanity_val_steps"], - strategy=_get_strategy(), - profiler=profiler, + strategy=_get_strategy() ) # Run the model trainer.predict(model, loaders.db_dataloader())