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Julie's Macbook setup #12

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jules32 opened this issue Aug 29, 2021 · 5 comments
Open

Julie's Macbook setup #12

jules32 opened this issue Aug 29, 2021 · 5 comments
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reproducibility Good for newcomers workflow

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@jules32
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jules32 commented Aug 29, 2021

Had a new logicboard and whole harddrive was reformatted, so starting afresh:

System preferences

trackpad

  • Point & Click: tap to click > check
  • Scroll & Zoom: scroll direction natural > uncheck

general

  • show scroll bars > always

keyboard

doc & menu bar

  • size: small
  • magnification: middle
  • automatically hide & show the doc > check

notifications

  • turn on do not disturb: when mirroring to projectors > check

Safari

@jules32 jules32 added reproducibility Good for newcomers workflow labels Aug 29, 2021
@jules32 jules32 changed the title Julie's new Macbook setup Julie's Macbook setup Aug 29, 2021
@jules32
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jules32 commented Aug 29, 2021

R, RStudio, Git setup

Follow https://ucsb-meds.github.io/meds-install-mac.html. Exceptions:

  • I installed the RStudio Daily since I'm working with Quarto: https://dailies.rstudio.com/
  • Didn't install Anaconda
  • RStudio suggested installing XCode, said yes.
  • Git setup: in addition to storing my GitHub PAT, I set up my SSH keys: https://happygitwithr.com/ssh-keys.html
    • I set a passphrase (for the first time).
    • To Create a file ~/.ssh/config I typed in the command line:
cd .ssh
touch config
nano config 
< paste>
 Host *
 AddKeysToAgent yes
 UseKeychain yes
<control X, yes, enter >

Quarto Install

@jules32
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jules32 commented Aug 29, 2021

Garrick's setup

https://twitter.com/grrrck/status/1333986413906436098

I didn't do everything listed here, but yes to these:

@jules32
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jules32 commented Aug 29, 2021

1 Password

Zotero

  • https://www.zotero.org/
  • Login from browser
  • Download desktop app and Zotero Connector to Firefox Firefox add-on
  • Desktop app: login, approve syncing, press the sync green circle-arrow to start syncing

Slack

Zoom

@jules32
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jules32 commented Aug 10, 2022

Dragon Software (by Nuance) setup

I bought the Professional Individual account, learning that this can be run on a Mac using a virtual machine (blog)

From a Mac, requires Parallels and Windows. Then, move the .exe to the Local Disk C: drive (and I saved it there as well). This followed Claire G's advice on the Parallels Forum about the Download Manager hanging for hours and hours when I double-clicked the .exe from the Mac's Downloads folder

(update: I returned it and started investing the time into physical therapy and strength building for my arms/RSI)

@jules32
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jules32 commented Jan 21, 2024

Mac OS Sonoma 14.2.1 - need to install XCode

TL;DR:

xcode-select --install

The story

Last week I upgraded to OS Sonoma. Today when I opened RStudio, there was no "Git" tab. In the terminal, git status errored:

git status
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun

I googled the error message, found the solution here: https://forums.developer.apple.com/forums/thread/673827

So in the terminal, I typed: xcode-select --install. It cryptically returned xcode-select: note: install requested for command line developer tools. I typed it again. Same cryptic message. Using the keyboard shortcut command-tab I noticed an unfamiliar application was open, some kind of installer. I looked it it - it was a dialog box that I needed to click in order for this to fully install.

Screenshot 2024-01-21 at 13 25 59

It said it would take 47 hours to download. Then corrected to 9 minutes. When it finished, I quit RStudio, and when reopened, I had the "Git" tabs again. 😎

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