version 3.0.9000 (dev)

fix bug happening when providing a single Y variable to sglrTheme (issue #1)
allow to provide folds for cross validation defined by user (issue #2)
individual beta and gamma for themes were not properly computed (issue #5)
improve evaluation of linear predictors in theme function (issue #8)
remove dependency on expm package (issue #10)
error message for lack of convergence were improved and scglrCrossVal no longer stops when a fold does not converge (issue #12)
add a plot for scglrCrossVal
fix contrasts error in scglrTheme (issue #20)
fix some URL in docs
move from plsdepot::plsreg2 to pls::plsr to initialize mixed model components (issue #22)

New features

preliminary integration of code from SCnext/mixedSCGLR written by Jocelyn Chauvet (issue #11)
moved parallelization to future framework. Need future.apply package (issue #16)
added progress to scglrCrossVal and scglrThemeBackward functions using progressr package (issue #17)

Deprecations

parameter nfolds of scglrCrossVal as been renamed to folds and now accepts also vectors. For now a warning is issued and provided value is used but update your code as it will be removed in a next version.
parameter mc.cores of scglrCrossVal is now deprecated as of the move to future framework for parallelization.

version 3.0

This major version introduces a new feature allowing to group covariates in so called themes.

added scglrTheme and scglrThemeBackward to handle theme oriented selection
reworked multivariateFormula to handle themes
added new plots targeting themes

Deprecations

deprecated barplot in favor of screeplot (same parameters)

version 2.1

Removed LPLS legacy method
changed from ING to PING

version 2.0

New method is available : SR (Structural Relevance) see vignette
Major rewrite of plot styling (not backward compatible)
Various fixes and improvements (especially when dealing with a single dependant variable)

version 1.0

Initial version of SCGLR

method LPLS (Local PLS)