From 15d943a9ea9b399f3765d6e09993b1ec33f65c38 Mon Sep 17 00:00:00 2001 From: rxu17 <26471741+rxu17@users.noreply.github.com> Date: Fri, 24 Jan 2025 15:12:48 -0800 Subject: [PATCH] lint --- genie/database_to_staging.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/genie/database_to_staging.py b/genie/database_to_staging.py index 457b387c..1fe1ec9c 100644 --- a/genie/database_to_staging.py +++ b/genie/database_to_staging.py @@ -756,7 +756,7 @@ def store_sv_files( ) sv_df = sv_df[sv_df["SAMPLE_ID"].isin(keep_for_merged_consortium_samples)] - sv_df = filter_out_germline_variants(input_data=sv_df, status_col_str = "SV_STATUS") + sv_df = filter_out_germline_variants(input_data=sv_df, status_col_str="SV_STATUS") sv_df.rename(columns=transform._col_name_to_titlecase, inplace=True) sv_text = process_functions.removePandasDfFloat(sv_df) sv_path = os.path.join(GENIE_RELEASE_DIR, "data_sv.txt")