diff --git a/genie_registry/clinical.py b/genie_registry/clinical.py index e5a4244c..3c497edb 100644 --- a/genie_registry/clinical.py +++ b/genie_registry/clinical.py @@ -392,7 +392,7 @@ def preprocess(self, newpath): "sample is True and inClinicalDb is True" ) sample_cols = sample_cols_table.asDataFrame()["fieldName"].tolist() - clinicalTemplate = pd.DataFrame(columns=set(patient_cols + sample_cols)) + clinicalTemplate = pd.DataFrame(columns=list(set(patient_cols + sample_cols))) sample = True patient = True