Upon upload, file names are changed to all lowercase.

[catrinaspruce]

Operating system

Windows 10

Description of the problem

file <- File(path = "fastq_manifest_Jax.IU.Pitt_LOAD2.PrimaryScreen.tsv",
parent = metaStaging)
file <- synStore(file, used= c("syn36522569", fastqfiles_key),
executed = rmdFile)

Results in
fastq_manifest_jax.iu.pitt_load2.primaryscreen.tsv

Expected behavior

fastq_manifest_Jax.IU.Pitt_LOAD2.PrimaryScreen.tsv

Actual behavior

The file saved on my computer as fastq_manifest_Jax.IU.Pitt_LOAD2.PrimaryScreen.tsv became fastq_manifest_jax.iu.pitt_load2.primaryscreen.tsv

Output of sessionInfo()

sessionInfo()
R version 4.2.2 (2022-10-31 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19045)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8
[3] LC_MONETARY=English_United States.utf8 LC_NUMERIC=C
[5] LC_TIME=English_United States.utf8

attached base packages:
[1] stats graphics grDevices utils datasets methods base

other attached packages:
[1] synapserutils_1.1.0.61 heatmaply_1.5.0 viridis_0.6.4
[4] viridisLite_0.4.2 plotly_4.10.3 lubridate_1.9.3
[7] forcats_1.0.0 stringr_1.5.1 dplyr_1.0.10
[10] purrr_1.0.2 readr_2.1.4 tidyr_1.3.0
[13] tibble_3.2.1 ggplot2_3.4.4 tidyverse_2.0.0
[16] httr_1.4.7 readxl_1.4.3 synapser_2.0.0.200
[19] kableExtra_1.3.4

loaded via a namespace (and not attached):
[1] pkgload_1.3.4 bit64_4.0.5 vroom_1.6.5 jsonlite_1.8.8
[5] foreach_1.5.2 here_1.0.1 assertthat_0.2.1 cellranger_1.1.0
[9] yaml_2.3.8 pillar_1.9.0 lattice_0.20-45 glue_1.6.2
[13] reticulate_1.34.0 digest_0.6.33 RColorBrewer_1.1-3 rvest_1.0.3
[17] colorspace_2.1-0 htmltools_0.5.7 Matrix_1.6-4 pkgconfig_2.0.3
[21] scales_1.3.0 webshot_0.5.5 svglite_2.1.3 tzdb_0.4.0
[25] timechange_0.2.0 generics_0.1.3 withr_3.0.0 lazyeval_0.2.2
[29] cli_3.6.2 crayon_1.5.2 magrittr_2.0.3 evaluate_0.23
[33] fansi_1.0.4 xml2_1.3.6 registry_0.5-1 tools_4.2.2
[37] data.table_1.14.10 hms_1.1.3 lifecycle_1.0.4 munsell_0.5.0
[41] compiler_4.2.2 ca_0.71.1 systemfonts_1.0.5 rlang_1.1.2
[45] grid_4.2.2 iterators_1.0.14 rstudioapi_0.15.0 rjson_0.2.21
[49] rappdirs_0.3.3 htmlwidgets_1.6.4 rmarkdown_2.25 gtable_0.3.4
[53] codetools_0.2-18 curl_5.2.0 DBI_1.2.1 TSP_1.2-4
[57] R6_2.5.1 seriation_1.5.4 gridExtra_2.3 keyring_1.3.2
[61] knitr_1.45 bit_4.0.5 fastmap_1.1.1 utf8_1.2.4
[65] rprojroot_2.0.4 dendextend_1.17.1 stringi_1.7.12 parallel_4.2.2
[69] Rcpp_1.0.11 vctrs_0.6.5 png_0.1-8 tidyselect_1.2.0
[73] xfun_0.41

[thomasyu888]

Thanks @catrinaspruce for bringing this to our attention! We will take a closer look at this

[thomasyu888]

Apologies for the delays - just adding more notes here as I noticed this might be a windows specific problem but would have to explore more.