codecov.yaml

name: CodeCov

on:
  push:
    branches:
      - main
  pull_request:

jobs:
  run:
    runs-on: ubuntu-latest

    defaults:
      run:
        shell: bash -l {0}

    steps:
    - uses: actions/checkout@v4
        
    - name: Setup Mambaforge
      uses: conda-incubator/setup-miniconda@v3
      with:
        miniforge-version: latest
        activate-environment: nhp
        use-mamba: true

    - name: Cache Conda env
      uses: actions/cache@v4
      id: cache
      with:
        path: ${{ env.CONDA }}/envs
        key: conda-${{ hashFiles('environment.yml') }}-${{ env.CACHE_NUMBER }}
      env:
        # Increase this value to reset cache if etc/example-environment.yml has not changed
        CACHE_NUMBER: 0

    - name: Update environment
      run: mamba env update -n nhp -f environment.yml
      if: steps.cache.outputs.cache-hit != 'true'

    - name: Generate Report
      run: pytest --cov=. tests/ --ignore=tests --cov-report xml:coverage.xml

    - name: Upload Coverage to Codecov
      uses: codecov/codecov-action@v4
      with:
        token: ${{ secrets.CODECOV_TOKEN }}