README.md

Folder structure

• bin/ (.py) - data analysis scripts

• data/ (.csv) - original data collected from two different experiments

Data analysis scripts (in bin/)

I/O

trial.py - used by mat_io.py
mat_io.py - matlab data to csv
pd_io.py - loading data in pandas
settings.py - specifies valid conditions in data
fig_data_gen.sh - batch creation of all data files

Fitting

sample.py - bootstrapping
mle.py - generic fitting helpers
saturating_exponential.py - sat-exp function
fit_pmf.py - psychometric functions fitting
fit_elbows.py - used by fit_pmf.py
fit_pcor_vs_dur.py - sat-exp fitting
fit_elbows_alts.py - alternative fits to sensitivity vs duration

Calculating statistics

elb_ci.py - confidence intervals and histograms of elbow fit params
elb_bic.py - calculate BIC for elbow fits of sensitivity vs duration
summaries.py - overview of # sessions and trials per subject and condition
sequential_effects.py - comparing inter-trial dependencies
significance.py - comparing two data collection conditions
corr.py - for assessing validity of threshold estimates

Utils for local plotting

scatter.py - plotting individual subject fit params
plot_pmf.py - plotting pmfs
plot_elbs.py - plotting bootstrapped fits to sensitivity vs duration
plot_resid.py - residuals of log-log plot using different numbers of elbows    
pcor_mesh_plot.py - plotting accuracy vs. both coh and dur