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Selecting the normalization = 'quantile' parameter in the dataProcess() will report an error like below, and there is no error if use the default parameters normalization = 'equalizeMedians'.
Data can be downloaded from here.
> DDA2009.proposed <- MSstats::dataProcess(raw = fileData1,
+ normalization = 'quantile',
+ summaryMethod = 'TMP',
+ censoredInt = "NA",
+ MBimpute = TRUE)
INFO [2022-03-08 10:48:00] ** Multiple fractionations exist: 2 fractionations per MS replicate.
INFO [2022-03-08 10:48:57] ** Features with one or two measurements across runs are removed.
INFO [2022-03-08 10:48:57] ** Fractionation handled.
INFO [2022-03-08 10:48:57] ** Updated quantification data to make balanced design. Missing values are marked by NA
Error in dcast.data.table(input[nonmissing_filter & label_filter & (RUN %in% :
Can not cast an empty data.table
Using the dataProces() (default parameter) will report an error that never occurred, and I want to know what caused it so I can write it in my condition judgment statement. Error message is as follows:
Data can be downloaded from here.
Error in .handleFractionsLF(input) :
** It is hard to find the same fractionation across sample, due to lots of overlapped features between fractionations. Please add Fraction column in input.
The text was updated successfully, but these errors were encountered:
Douerww
changed the title
Error in dataProcess() and a new appeared error report
two errors
Mar 8, 2022
Douerww
changed the title
two errors
two errors about dataProcess()
Mar 8, 2022
normalization = 'quantile'
parameter in the dataProcess() will report an error like below, and there is no error if use the default parametersnormalization = 'equalizeMedians'
.Data can be downloaded from here.
Data can be downloaded from here.
The text was updated successfully, but these errors were encountered: