[Stretch] Implement modifications to getSubnetworkFromIndra

[tonywu1999]

Context

MSstatsBioNet consists of a function called getSubnetworkFromIndra that fetches a subnetwork from INDRA. This is particularly useful for protein discovery applications. This task involves some minor tweaks to this function.

Subtasks

• Add a logFC and p-value cutoff parameters to filter on the proteins
• Add exception handling when INDRA returns an error
  • Particularly when INDRA returns an error related to a 400 node limit to its API, MSstatsBioNet should notify users of this limit and to consider adjusting p-value/logFC cutoffs.
• Add unit tests
• PR and merge

Acceptance Criteria

We should be able to produce a subnetwork with proper filtering using this CCRCC dataset. If an error occurs, it's clear what action is required of users.