DESCRIPTION

Type: Package
Package: MSstatsLiP
Title: LiP Significance Analysis in shotgun mass spectrometry-based proteomic experiments
Version: 1.9.2
Date: 2024-4-02
Description: Tools for LiP peptide and protein significance analysis. Provides 
              functions for summarization, estimation of LiP peptide abundance, 
              and detection of changes across conditions. Utilizes functionality
              across the MSstats family of packages.
Authors@R: c(person("Devon", "Kohler", email = "kohler.d@northeastern.edu", role = c("aut", "cre")),
            person("Tsung-Heng", "Tsai", email = "tsai.tsungheng@gmail.com", role = "aut"),
            person("Ting", "Huang", email = "thuang0703@gmail.com", role=c("aut")),
            person("Mateusz", "Staniak", email = "mtst@mstaniak.pl", role = c("aut")),
          	person("Meena", "Choi", email = "mnchoi67@gmail.com", role="aut"),
            person("Valentina", "Cappelletti", email = "valentina.cappelletti@imsb.biol.ethz.ch", role="aut"),
            person("Liliana", "Malinovska", email = "malinovska@imsb.biol.ethz.ch", role="aut"),
          	person("Olga", "Vitek", email = "o.vitek@northeastern.edu", role = "aut"))
License: Artistic-2.0
Depends: R (>= 4.1)
Imports: dplyr, gridExtra, stringr, ggplot2, grDevices, MSstats, MSstatsConvert,
          data.table, Biostrings, MSstatsPTM, Rcpp, checkmate, factoextra, 
          ggpubr, purrr, tibble, tidyr, tidyverse, scales, stats
Suggests: BiocStyle, knitr, rmarkdown, covr, tinytest, gghighlight
LinkingTo: Rcpp
VignetteBuilder: knitr
biocViews: ImmunoOncology, MassSpectrometry, Proteomics, Software, DifferentialExpression, 
           OneChannel, TwoChannel, Normalization, QualityControl
BugReports: https://github.com/Vitek-Lab/MSstatsLiP/issues
Encoding: UTF-8
LazyData: TRUE
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3